spermatogonium
▻ Planarian Anatomy Ontology Class Overview
▻ PAGE: Planarian Anatomy Gene Expression
Planarian Anatomy Ontology Class Overview
For more information about the ontology visit PLANA Overview
NAME:
spermatogonium
DEFINITON:
An euploid male germ cell of an early stage of spermatogenesis. In planaria, the gh4+ stem cell daughter exiting the niche undergoes three rounds of transit amplifying division with incomplete cytokinesis prior to transitioning to terminal differentiation.
TERM DEFINITION CITATIONS:
PMID:27330085, PMID:27163480
TERM CITATIONS:
Expand publication list
TERM ID:
PLANA:0000220
ABOUT THIS TERM:
spermatogonium
↳is a male germ cell, material entity and progenitor cell ↳contained in tail region, copulatory region, posterior region of the whole animal, parapharyngeal region, prepharyngeal region, dorsal region of the whole animal and anterior region of the whole animal
↳develops from spermatogonial stem cell
↳existence overlaps juvenile stage and adult hermaphrodite
↳existence starts during or after juvenile stage
↳part of testis
→ spermatocyte develops from spermatogonium
Expand to see terms that is a spermatogonium
BROWSE PLANARIAN ONTOLOGY TREE (IN OLS):
Click on the '-' and '+' to collapse and expand term 'is a' and 'part of' relationships.
EXPLORE ONTOLOGY GRAPH:
Dynamically explore this term by selecting additional relationships to display (checkboxes on the right). Expand nodes by double-clicking on it . Single-click on a node to display the definition below the graph.
PAGE: Planarian Anatomy Gene Expression
These transcripts were reported as being expressed in spermatogonium. Click this link to learn more about PAGE.
PAGE Curations: 31
PLANA Term Reference Transcript Description Gene Models Published Transcript Transcriptome Publication Specimen Lifecycle Evidence spermatogonium SMED30015977 HMG box domain-containing protein SMESG000021063.1 DN307831.1 ncbi_smed_ests PMID:22074376
Chong et al., 2011 
spermatogonium SMED30000951 TPA_inf: Y box protein 4-like protein SMESG000076962.1 BK007100 smed_ncbi_20200123 PMID:22074376
Chong et al., 2011 spermatogonium SMED30021934 Plastin-3 SMESG000042101.1 DN311193.1 ncbi_smed_ests PMID:22074376
Chong et al., 2011 spermatogonium SMED30021934 Plastin-3 SMESG000042101.1 HO007660.1 ncbi_smed_ests PMID:22074376
Chong et al., 2011 spermatogonium SMED30027985 Phosphodiesterase SMESG000053281.1 DN313728.1 ncbi_smed_ests PMID:22074376
Chong et al., 2011 spermatogonium SMED30015458 T-complex protein 1 subunit delta SMESG000060610.1 MF669565.1 smed_ncbi_20200123 PMID:29095551
Counts et al., 2017 spermatogonium SMED30030988 T-complex protein 1 subunit theta SMESG000023665.1 MF669570.1 smed_ncbi_20200123 PMID:29095551
Counts et al., 2017 spermatogonium SMED30030151 T-complex protein 1 subunit zeta SMESG000049015.1 MF669568.1 smed_ncbi_20200123 PMID:29095551
Counts et al., 2017 spermatogonium SMED30033996 T-complex protein 1 subunit eta SMESG000079886.1 MF669569.1 smed_ncbi_20200123 PMID:29095551
Counts et al., 2017 spermatogonium SMED30018729 T-complex protein subunit epsilon SMESG000012740.1 MF669567.1 smed_ncbi_20200123 PMID:29095551
Counts et al., 2017 spermatogonium SMED30015115 SMED30015115 SMESG000078668.1 MF669566.1 smed_ncbi_20200123 PMID:29095551
Counts et al., 2017 spermatogonium SMED30011774 T-complex protein 1 subunit theta SMESG000009544.1 MF669571.1 smed_ncbi_20200123 PMID:29095551
Counts et al., 2017 spermatogonium SMED30006002 T-complex protein 1 subunit gamma SMESG000066978.1 MF669563.1 smed_ncbi_20200123 PMID:29095551
Counts et al., 2017 spermatogonium SMED30021699 T-complex protein 1 subunit beta SMESG000016726.1 MF669562.1 smed_ncbi_20200123 PMID:29095551
Counts et al., 2017 spermatogonium SMED30022614 T-complex protein 1 subunit alpha SMESG000067696.1 MF669561.1 smed_ncbi_20200123 PMID:29095551
Counts et al., 2017 spermatogonium SMED30025525 T-complex protein 1 subunit gamma SMESG000075311.1 MF669564.1 smed_ncbi_20200123 PMID:29095551
Counts et al., 2017 spermatogonium SMED30017509 Boule 2 RNA-binding protein SMESG000061507.1 KT709533.1 smed_ncbi_20200123 PMID:27149082
Steiner et al., 2016 
spermatogonium SMED30017509 Boule 2 RNA-binding protein SMESG000061507.1 KU519617 smed_ncbi_20200123 PMID:27149082
Steiner et al., 2016 spermatogonium SMED30035755 Cytoplasmic polyadenylation element-binding protein 2 SMESG000055629.1 KX074204 smed_ncbi_20200123 PMID:28434803
Rouhana et al., 2017 spermatogonium SMED30028164 Cytoplasmic polyadenylation element-binding protein 2 SMESG000055629.1 KX074204 smed_ncbi_20200123 PMID:28434803
Rouhana et al., 2017 spermatogonium SMED30016672 Cytoplasmic polyadenylation element-binding protein SMESG000055629.1 KX074204 smed_ncbi_20200123 PMID:28434803
Rouhana et al., 2017 spermatogonium SMED30002914 Nck-associated protein 1 SMESG000055629.1 KX074204 smed_ncbi_20200123 PMID:28434803
Rouhana et al., 2017 spermatogonium SMED30011677 RRM domain-containing protein SMESG000018666.1 KU519616 smed_ncbi_20200123 PMID:27330085
Iyer et al., 2016 spermatogonium SMED30017509 Boule 2 RNA-binding protein SMESG000061507.1 KU519617 smed_ncbi_20200123 PMID:27330085
Iyer et al., 2016 spermatogonium SMED30020626 RRM domain-containing protein SMESG000018666.1 KU519616 smed_ncbi_20200123 PMID:27330085
Iyer et al., 2016 spermatogonium SMED30034750 nanos-like protein SMESG000018169.1 EF035555.1 smed_ncbi_20200123 PMID:17390146
Handberg-Thorsager et al., 2007 spermatogonium SMED30034750 nanos-like protein SMESG000018169.1 EF153633 smed_ncbi_20200123 PMID:17390146
Handberg-Thorsager et al., 2007 spermatogonium SMED30032231 heterogeneous nuclear ribonucleoprotein A2 SMESG000025890.1 HM639989 smed_ncbi_20200123 PMID:20844018
Wang et al., 2010 spermatogonium SMED30011351 Glyceraldehyde-3-phosphate dehydrogenase SMESG000034925.1 Contig6300_SE3 GPL10652 PMID:20844018
Wang et al., 2010 spermatogonium SMED30019490 Rap55 protein SMESG000020999.1 HM055596 smed_ncbi_20200123 PMID:20844018
Wang et al., 2010 spermatogonium SMED30003873 nuclear factor Y subunit B SMESG000017262.1 HM100653 smed_ncbi_20200123 PMID:20844018
Wang et al., 2010
Note: Hover over icons to view figure legend
↳contained in tail region, copulatory region, posterior region of the whole animal, parapharyngeal region, prepharyngeal region, dorsal region of the whole animal and anterior region of the whole animal
↳develops from spermatogonial stem cell
↳existence overlaps juvenile stage and adult hermaphrodite
↳existence starts during or after juvenile stage
↳part of testis
→ spermatocyte develops from spermatogonium
Expand to see terms that is a spermatogonium
BROWSE PLANARIAN ONTOLOGY TREE (IN OLS):
Click on the '-' and '+' to collapse and expand term 'is a' and 'part of' relationships.
EXPLORE ONTOLOGY GRAPH:
Dynamically explore this term by selecting additional relationships to display (checkboxes on the right). Expand nodes by double-clicking on it . Single-click on a node to display the definition below the graph.
PAGE: Planarian Anatomy Gene Expression
These transcripts were reported as being expressed in spermatogonium. Click this link to learn more about PAGE.
PAGE Curations: 31
| PLANA Term | Reference Transcript | Description | Gene Models | Published Transcript | Transcriptome | Publication | Specimen | Lifecycle | Evidence |
|---|---|---|---|---|---|---|---|---|---|
| spermatogonium | SMED30015977 | HMG box domain-containing protein | SMESG000021063.1 | DN307831.1 | ncbi_smed_ests | PMID:22074376 Chong et al., 2011 | | | |
| spermatogonium | SMED30000951 | TPA_inf: Y box protein 4-like protein | SMESG000076962.1 | BK007100 | smed_ncbi_20200123 | PMID:22074376 Chong et al., 2011 | | | |
| spermatogonium | SMED30021934 | Plastin-3 | SMESG000042101.1 | DN311193.1 | ncbi_smed_ests | PMID:22074376 Chong et al., 2011 | | | |
| spermatogonium | SMED30021934 | Plastin-3 | SMESG000042101.1 | HO007660.1 | ncbi_smed_ests | PMID:22074376 Chong et al., 2011 | | | |
| spermatogonium | SMED30027985 | Phosphodiesterase | SMESG000053281.1 | DN313728.1 | ncbi_smed_ests | PMID:22074376 Chong et al., 2011 | | | |
| spermatogonium | SMED30015458 | T-complex protein 1 subunit delta | SMESG000060610.1 | MF669565.1 | smed_ncbi_20200123 | PMID:29095551 Counts et al., 2017 | | | |
| spermatogonium | SMED30030988 | T-complex protein 1 subunit theta | SMESG000023665.1 | MF669570.1 | smed_ncbi_20200123 | PMID:29095551 Counts et al., 2017 | | | |
| spermatogonium | SMED30030151 | T-complex protein 1 subunit zeta | SMESG000049015.1 | MF669568.1 | smed_ncbi_20200123 | PMID:29095551 Counts et al., 2017 | | | |
| spermatogonium | SMED30033996 | T-complex protein 1 subunit eta | SMESG000079886.1 | MF669569.1 | smed_ncbi_20200123 | PMID:29095551 Counts et al., 2017 | | | |
| spermatogonium | SMED30018729 | T-complex protein subunit epsilon | SMESG000012740.1 | MF669567.1 | smed_ncbi_20200123 | PMID:29095551 Counts et al., 2017 | | | |
| spermatogonium | SMED30015115 | SMED30015115 | SMESG000078668.1 | MF669566.1 | smed_ncbi_20200123 | PMID:29095551 Counts et al., 2017 | | | |
| spermatogonium | SMED30011774 | T-complex protein 1 subunit theta | SMESG000009544.1 | MF669571.1 | smed_ncbi_20200123 | PMID:29095551 Counts et al., 2017 | | | |
| spermatogonium | SMED30006002 | T-complex protein 1 subunit gamma | SMESG000066978.1 | MF669563.1 | smed_ncbi_20200123 | PMID:29095551 Counts et al., 2017 | | | |
| spermatogonium | SMED30021699 | T-complex protein 1 subunit beta | SMESG000016726.1 | MF669562.1 | smed_ncbi_20200123 | PMID:29095551 Counts et al., 2017 | | | |
| spermatogonium | SMED30022614 | T-complex protein 1 subunit alpha | SMESG000067696.1 | MF669561.1 | smed_ncbi_20200123 | PMID:29095551 Counts et al., 2017 | | | |
| spermatogonium | SMED30025525 | T-complex protein 1 subunit gamma | SMESG000075311.1 | MF669564.1 | smed_ncbi_20200123 | PMID:29095551 Counts et al., 2017 | | | |
| spermatogonium | SMED30017509 | Boule 2 RNA-binding protein | SMESG000061507.1 | KT709533.1 | smed_ncbi_20200123 | PMID:27149082 Steiner et al., 2016 | | | |
| spermatogonium | SMED30017509 | Boule 2 RNA-binding protein | SMESG000061507.1 | KU519617 | smed_ncbi_20200123 | PMID:27149082 Steiner et al., 2016 | | | |
| spermatogonium | SMED30035755 | Cytoplasmic polyadenylation element-binding protein 2 | SMESG000055629.1 | KX074204 | smed_ncbi_20200123 | PMID:28434803 Rouhana et al., 2017 | | | |
| spermatogonium | SMED30028164 | Cytoplasmic polyadenylation element-binding protein 2 | SMESG000055629.1 | KX074204 | smed_ncbi_20200123 | PMID:28434803 Rouhana et al., 2017 | | | |
| spermatogonium | SMED30016672 | Cytoplasmic polyadenylation element-binding protein | SMESG000055629.1 | KX074204 | smed_ncbi_20200123 | PMID:28434803 Rouhana et al., 2017 | | | |
| spermatogonium | SMED30002914 | Nck-associated protein 1 | SMESG000055629.1 | KX074204 | smed_ncbi_20200123 | PMID:28434803 Rouhana et al., 2017 | | | |
| spermatogonium | SMED30011677 | RRM domain-containing protein | SMESG000018666.1 | KU519616 | smed_ncbi_20200123 | PMID:27330085 Iyer et al., 2016 | | | |
| spermatogonium | SMED30017509 | Boule 2 RNA-binding protein | SMESG000061507.1 | KU519617 | smed_ncbi_20200123 | PMID:27330085 Iyer et al., 2016 | | | |
| spermatogonium | SMED30020626 | RRM domain-containing protein | SMESG000018666.1 | KU519616 | smed_ncbi_20200123 | PMID:27330085 Iyer et al., 2016 | | | |
| spermatogonium | SMED30034750 | nanos-like protein | SMESG000018169.1 | EF035555.1 | smed_ncbi_20200123 | PMID:17390146 Handberg-Thorsager et al., 2007 | | | |
| spermatogonium | SMED30034750 | nanos-like protein | SMESG000018169.1 | EF153633 | smed_ncbi_20200123 | PMID:17390146 Handberg-Thorsager et al., 2007 | | | |
| spermatogonium | SMED30032231 | heterogeneous nuclear ribonucleoprotein A2 | SMESG000025890.1 | HM639989 | smed_ncbi_20200123 | PMID:20844018 Wang et al., 2010 | | | |
| spermatogonium | SMED30011351 | Glyceraldehyde-3-phosphate dehydrogenase | SMESG000034925.1 | Contig6300_SE3 | GPL10652 | PMID:20844018 Wang et al., 2010 | | | |
| spermatogonium | SMED30019490 | Rap55 protein | SMESG000020999.1 | HM055596 | smed_ncbi_20200123 | PMID:20844018 Wang et al., 2010 | | | |
| spermatogonium | SMED30003873 | nuclear factor Y subunit B | SMESG000017262.1 | HM100653 | smed_ncbi_20200123 | PMID:20844018 Wang et al., 2010 | | | |
