proximal tubule
▻ Planarian Anatomy Ontology Class Overview
▻ Embryonic Molecular Fate Mapping
▻ In Situ Hybridization Data
▻ Sequences
▻ PAGE: Planarian Anatomy Gene Expression
Planarian Anatomy Ontology Class Overview
For more information about the ontology visit PLANA Overview
NAME:
proximal tubule
DEFINITON:
Ciliated epithelial cells form tubules, generating coiled, branching units terminating in flame bulbs. Tubules are formed via intercellular junctions between two epithelial cells. Proximal tubules are connected to non-ciliated distal tubules within the parenchyma.
TERM DEFINITION CITATIONS:
PMID:21828097
TERM CITATIONS:
Expand publication list
TERM ID:
PLANA:0000087
ABOUT THIS TERM:
proximal tubule
↳is a material entity and tissue ↳adjacent to flame cell and distal tubule
↳contained in tail region, copulatory region, posterior region of the whole animal, parapharyngeal region, prepharyngeal region, head region, dorsal region of the whole animal and anterior region of the whole animal
↳develops from protonephridial progenitor cell
↳existence overlaps Stage 6, juvenile stage, asexual adult, adult hermaphrodite, Stage 8 and Stage 7
↳existence starts during or after Stage 6
↳part of protonephridia
→ flame cell adjacent to proximal tubule
→ proximal tubule epithelial cell part of proximal tubule
DEPICTED BY:
BROWSE PLANARIAN ONTOLOGY TREE (IN OLS):
Click on the '-' and '+' to collapse and expand term 'is a' and 'part of' relationships.
EXPLORE ONTOLOGY GRAPH:
Dynamically explore this term by selecting additional relationships to display (checkboxes on the right). Expand nodes by double-clicking on it . Single-click on a node to display the definition below the graph.
Embryonic Molecular Fate Mapping
All experimental data displayed here is from Davies et. al., 2017, Smed Embryogenesis Molecular Staging Resource
IN SITU HYBRIDIZATION DATA:
Smed ID Accession Name Alias Expressed during stage(s) Tissue/Pattern Images
SMED30030007 Rootletin H.2.8b, crocc Stage 5, Stage 6, Stage 7, Stage 8 protonephridia, renal system, integumental system, Category 5 cell, proximal tubule 
Click to see image symbols and abbreviations
Abbreviation or symbol Definition
O oral hemisphere
A aboral hemisphere
D dorsal
V ventral
L lateral
black arrowhead embryonic pharynx
red arrowhead definitive pharynx
black arrows primitive gut
yellow arrows primitive ectoderm cells
cyan arrows brain
cyan arrowheads nerve cords
blue arrowheads eye progenitors (trail cells)
purple arrowheads eyes
scale bar 100 µm
SEQUENCES:
smed_20140614 transcript sequences for genes validated by in situ hybridization (above).
>SMED30030007 ID=SMED30030007|Name=Rootletin|organism=Schmidtea mediterranea sexual|type=transcript|length=6612bp
GTTGTTTTTAAATCACTATTTTTTTTATTTCATCTGATTATAATTTTTTTTTATTGAAATTTGTATTTTGAAATTGGTGA
ACAATGAGTGAGATAGATTATTCCGCTATTGTTCGGAGACGCATTGGAGATATCGATGGGGATTCAAGTGAAGATTCCAG
TTCAAAGGGTTTGCTTCAAGTTAACTTGGAACTGAGAAAGCGCTTAGAGGAAGAACACAATGAGTATCGTAGAAAGCTGA
TAGTTTTCCAAGACAGCCAACAGAAACAAGCGCAATTGGTTCAAAGATTGCAGAAAAAGGTATTGCAATACAAAGAAAAA
TGCACGGAACTTGAATCTAAAATGCAATTTGGCGATTATGAGACTCGAAAAACGAAGTATGGAAGTCCAACGAATAACGG
CTATGGGTCGCGTAGTGAGAATCCCTACGACAATCTGGATTTGGAGAGCACACTCATTAAGTTAGAAGAGGAACAAAAAA
AAACAAATTATCTAACGGAGTTCAATGAACGGCTTCAAGAACAATTAACTCAAGCAACTCAATCAAACCAGAATTTGACG
AGAGACATCAGTAAGCTTTCCGAAGAATGGCAGAGATCAAGGGAGGAGCTTGAACAGAGAGAAAAAATTTGGCGAAATGA
AGAAATGTCATTTAATGACTATTTAGCATCTGAGCATTCGAATCTGCAAAATTTGCAACGCAATACGATAAATTTCCGCC
GTCAATTTATAGAATTGAAAGCTTCAACTGAACGGGAAATAAATAATTTGAAAAATGAATTCAACCGACAGGCACGCTGT
TTGCAAACTGCTTGTTCCAATCTTTCGTGCAACATGAAATCTGCAGAATCTAAACAACAATTGAGTACTGAACGAGAAAG
TCGGGACAAGTTGAATCTCGAAAATCAACTGCGAGAAAAAAACAGAGAATTAACTGATTACCAAACTCGGTATGAATGTG
AAATGACAGAATTGCAACACCGAGTGAAAGAATTAACAGTTCTCAGTGACAAACTGAAAATTCAAAACCTGGAAAAGGAT
CGAGCATTGACAGCTTTGCAAAGAATTAAGAATGGAGATACCGCAGGAGAAATAAATATGGAAGACAAAGCTACAAGAGT
TCTTATTGAAGACACAGAAAGTATGCATCAAGCACTTCGAAATATTTCTCAAGTAGTACTAAATGATTCTGACTATTTCG
ATGCAGAAGACACAGGATTTGAAACAGTTCGAAAGAATAATCGTTCGCCAAGTCCAAGGAGAAATCGTAGCGTCAGTCCT
AACTCAAGATCAGCTAAAACACCGCCATTTGCCGATGCAACGTATGCGGCGGTTCAGTCGGCTATAAATAAAAAATCTCT
ACAGATTCAAGAGCTTAAATCAAAATTAAACAGTTCTAAAGAGAGTTGTACAAACTTCAAAAGACAAATTGATGACAATG
AAAATGAACGTCGACGATTAGAGAATCAAGTTCTCGCCATGAGAGATGAAATTGAAAGTTTACGACGAGATAAAGATGAT
AGTTTTAGAGAAGCGGATCGGTTTAAAAATGCTCTGAACATCACTTCAAATGAACGAAGCCAATTGGAAAAGATTCGATC
ATCACTAAACGATCAAATTGAGCAGCAACTCACAGAAATTGAACGACTTAAGTCAGCCAATCACGAATTACAACGATTGA
GAGAGGCATTGGAAGATGAGCAAGAAGATACTAAAAAAGACTTAGAAAGACAAATTAAAGAAAGTGAAAGATGCCAACGA
TCGATTGATGTTTTGGAAGATAAAATAAGTCGATTTAAAGAAGACGTAGTTAATTACAAAGAGGCAATTAATAAATACCA
ATTAGAAAAAGAAGTATTGGTGCAAGAAAAGGATGAGATTGGTGATGCTTTAAGTCGTTGTGAAATTTCTAAAGCCGAAT
TAGAAATCGAGGTGAATAAACGGCAAACTATTGAAGTAAATTTGGAAGAAAACATTTCAAAATTATCCTCAGAAATCGAA
GAATTGAATGATAAGCGAGCTGAAAACCACAGAACTATTAAACAGCTGGAACATGAAAGAAGTTCTCTTTTGAATGAAAA
ACGATTTTTGGAACAAGAAAAAAGTGGTTTGAAAGATGAGCTTGTTCGATCTGAACAAGAGGCTCTTGGTTTGTCAAATG
AGAAAGCCATTCAACGTCAAAGAATCGAACAACTTGAAATTAATACAGAAAGATTAGAAGAAGAGTTATCGGAACTCAAT
CGAGAAAAGCTAGATCTTACTGAACAAATAGGCTGTTTGCAGAGGCAGAAATCGGCTCTTGCAGAAGAATTGTTGCAATG
TCGTAGAGAATTAGAACGATCTAATAACAGTGTCAACAACTTATCAAAAGAAAAGGAATATCTTACCAAAGAGAAAGGAG
AACTCGTCGTTCAAGTTACAGCTTGCGAAAGGGAAAATCGTCAACAGTCAGAAGTTATTGCTTCTTTGAATTCCGATAGA
GAACAACTGGAAGCTACTCTTTATGATGCTCAACAATTAATCATTCAGTTGGAAACTCGAAAAGAGCAATTAGAAGGCGA
AAACCAAGAGTTGATTGTGAAAAAAGAAAATCTAAATGGAGAACTAGTCAGATTACGACAAGAGTTTCAACTAGAATACG
AGAAGGTTGTTAATTCACGAGAACAATTAAATTGCAGATATCAACAAATGGATAAAGAATATAAGATGGCAATTCAACAA
GAGCGAGATTCTCATGCTGAAGATGTAGAAAGACTAACTAAGATAAACGAAAGCAATCGTCATGGATCTGAAAACGAACG
AGAAGAGCTTATTCATCGATTCAATATGGAGCGTGACGACATGATTCAAAATTACGAACAAGAGAAACAAGAAATGGCCC
AGGAAATCATGACGATCCAACGAGAACGAGATGACTCATTATTAATGGCGGAAAATGAAAAGCAGCAATCATTGAGTTTA
TTAGAACAAGAAAAATGTGCAATCAATGAAAAGCTTATCAAAACGCAATTTGAACTGCAATCGGTTGAGTCGGAATTGGA
TCGCATTAAAAAGGAGTCGTCCAATCGTCAGGAGCAAGACAAACAGAACATTGCCGGCTTGTCGAGTGAACTCAAATCAT
TTAGATCTCAATTTGAGGATAAATGCCAAAATCACGAAATGGAAGTTAAAAGCCTAAATAGTGGAATCAAGGATCTAACA
TTAATGAAAGATCAAGCTCTCAAAGAAGTCCATGATTTGCATACCGGATTAAAAATAGCTGAAGAAACCCGTGATAATTT
GCGTCGGGAAATCATGGAAATGAATCGGAAATTGAAAGAAGCTGAGGAAGCCAAAGAGCACTTAAAGCGTGAAATTAATG
AATTGAAACGTGGATTATGCGAAGAACAAAGGGAAAAAGAAAATGTTATTAACTCAAATGAGAATTTGAGAAAGAAAATT
AAAGATGTTGAAACAGAAAGAATTGATTTGCACAGACAAGTAACGGATTCCAAACAAAAGGTTGCAGTACAAGATGAACA
ATTGGTCAATTCCAAACAAGAGGTCAATGAGTTAAGAAACAATCTTAAAGACGTAGAAAAAGCTCGATTAGATGTCAAAA
GAGAGTTACAAGAACTCAGACGCCATATCAAAGAGCTAGATACGGAAAGGGGCAAATTGACTAAAGAAGTCAATGATTTG
CAAACTCGTGTTGCTAGAGATGAAGAAAAAGAGGATGAAGCTCGTCGGGAAAATTTCGGTCTCAAACAAAAAGTTGTTGA
AACGGAAGCTTCAAGAGAAGCCGTTCGTAAAGATCTTGCTAATGCTCAACGACATATTGTTGATTTGGAAAATGTTCTGC
AGAGCAAAGACAGAGATTTCAGTTCCATGGTGGAATCGAGCCGCCGGGATTATAGGAAACTTGCTGATGCGAGAAATAGC
CTGCAACAAGTATATGATACGATGGTGGCCGATAATAATGAGCTGAGAATTGCTCTCAGTGGAGCAGAAGGTCGGGTCAG
TGCTCTGGAGTCACACATCGCACGAGTTGAAGGAGCTAAGAAAGAAATTGAATTCAAATTGGCTTCTATCCATAGCTCAT
TGCGAAGGCTGATAGGATTCCGACAGGAGAATGTAGTTACTATTCGGTCGAGAAACAACTCCAAATCTCCAGTTAGAGGT
CGATCAGTTAGTCCTCTTAGAAGTAGGCCGGTGTCGCCAACCAAAGGATTTGACAATACCTATGCTACTACAACTGATGG
AAAAGGTAGCCCTATCCCGCGCACAGGGTCTCCGAGTTCTAAACGAAGGCAATTATCAAGATCTCCGTCTAATTGCGATT
TCAATCCAGTCGATATAAATCCAGAAGCAGTTCGTCTGGCCTTGCGAGAATTCGTACAGCAGTTGGTTGATGCTGAACGA
GATAGAGATGACGCTTTTGCTCAAGCTCGCAGCCTAGAATCTCGATTGAAAGAACAAGAAGAACAAAATGAATATGCTGA
AAACCGTTTACAACAACTACAACAAGCTCTGTGTGATGCAGAAGAAGACAAAAAAGGCATTGATGGAAGATTGTCATCAG
CCCAAACTGCCTTAATGATGCAAGAAGAGACTATTCGGCGCAATGAGAGAGATAGAAAAGCAATGGCGGAAAAGTTGAGT
AATTACGATAGAACATTTGCATCCATGGAATCAGAAAAACGACAATTGGAAGATCGGTTGAATAAATTCCGTCATCATGA
TGCCCGATTGGAAGAAGAACATAAGCAGAGCAAAAAAGCTATTGAAAATGCTGAAAATAGAATAACTCAGCTTCAGCTTG
CCAAGCGATCGTTAGAAGGAGATCTTCAAAGAATGAAAATGGCGTTGACAGATAAAGAAACAGAAACCGAAGTTTTGGAT
GACCGCGTAAATAGTTTACTCAAACAAATACAAGATCTCGAGGGAAAATCTCAATCACTTCAACTAACGATTGACAGAAT
GAGTGTCGCCCTTGCAAAAACTGAGGAAGAAGGCAGTTTTCATAAGGACAAAATGCAACAGTTGAATATGAGTTTGAGCA
CTCATTCACAACAACTGGAACAATTACAGAATAAGATTTCTCAATTACAAAAAGCACTCGGCAGTTCAGAACAAGATCGT
CGGCTCTTAGAGGAACGATTAGAAAGCTCTAAAGGAGCATTGCATGAGGCAAAACATCAAAATAATTTGTTGATGGAAAG
AATACAAATAATTCAATCCGATTTAAATGATTCGGAAAATCGTCGATCAGAATTGGAAGGATTAAATCGACAGAGTAACA
CTTTGATTGTACAAAGACAAGAAGCTGAACAAGAACTCAATCAAAAATATCAGAAATTGAACTCGGAGAAAAACACATTA
CAAGAGCGAGTGAATAGCATGCAACGAAATTTGGCTTTGGCAGAAGCAGAAAAACAAGAAATAATAAAAAACCACGGAAA
ATTGGAAAAGGATAGATCTGCCTTGAAAAAGAGTCTTGGAAAAGTTGAACGTCAGAAATTGAAAACCGAAGAAATTGCTA
GCAAAACTGTTTTTGAACGTTCAGAATTAGATCAAATTTTAAGGAGACTTGAAGATGAAAATTGTGAATTACAGAGACAA
GTTGGAATTCTTCAAAATCAATTAGCAGAAGCTGAGCAAGCTCACTGCCACCATTTGATGGAAATCAATTCCCGCCATCG
CCAGGAAATGTCCATGGAAATGGAGCATTTGAGAGCATCGAATGTTCAAATAGAACGAACTCTAGAAGGCAGAGAACGAG
CCCACAGACAAAGAGTTAAGGGTCTGGAAGAACAGATCTCCACCCTCAAAGACCAGCTGACTCATGAAATGCAGAGGCGG
ATGGATAGTGGATATTACGAGTCTACCAGAAAGTCTAATCAATACGATTCAACTGGTGACTTGCGACATGTTCTGGATTC
CAGTTTAACTCGAGTTGCAAAAGACCCTCAACTGGACGCAATGCTACTGGAAACCGAAGCCAGGCGACTCGATGAGTCGA
TATTCATGTGTGGCAGTCGTGATCAGTCTCCGACCCGGCAGAAGCGAATCGAAATGTCAAAGAAGTCCGCAGCCCCTAAC
AATTCCAATCGGCGATTAACTGCCGGCCGTCGCAAATGAACTCGGCCTGTTCCAGTCCGTCCAGAGATGTTATGAAGCCA
CTTTTTAGATGCGTGAGTGTGAGTTCGTGTTGGTGACTGATTCATTTTTAGTAAACAGATTCTGGATTTTTGTTTTTATT
GATAGTGTAATTTCCTAATGCAGATCTGATAGTTGACTTGTTGTTCTTACGTATTCGGTATTTGTGATTCACATAGTCTG
TCATTGTTACTGTGATTTATCCTCTGTGTGACTTTTGTGATTTACTTACTTTATTGCCCCTATAATCAATAAATGGATTT
ATCGATAGTTCAGCCCTCCCCTCCAGCCCTCGTTTTGGGATCCGTAAATTTTGTTTCAATTGAGATCATTATAGTGATTT
TATTCCTTCGAAACCAAACCTTTGGGAGGGACATAAAATTAAATTATTGATTTTTTATTATCTTAGAAGTGAAAGATGTT
TATTTCCCAAATTAACTAATATCAATAATAACTTTAATTTATATCTTCATTA
PAGE: Planarian Anatomy Gene Expression
These transcripts were reported as being expressed in proximal tubule. Click this link to learn more about PAGE.
PAGE Curations: 38
PLANA Term Reference Transcript Description Gene Models Published Transcript Transcriptome Publication Specimen Lifecycle Evidence proximal tubule SMED30000014 slc20a-1 SMESG000012546.1 dd_Smed_v4_1270_0_1 dd_Smed_v4 PMID:29674431
Fincher et al., 2018
proximal tubule SMED30030379 POU domain protein SMESG000076173.1 SMED30030379 smed_20140614 PMID:28072387
Davies et al., 2017
proximal tubule SMED30030379 POU domain protein SMESG000076173.1 SMED30030379 smed_20140614 PMID:28072387
Davies et al., 2017
proximal tubule SMED30030379 POU domain protein SMESG000076173.1 SMED30030379 smed_20140614 PMID:28072387
Davies et al., 2017
proximal tubule SMED30030379 POU domain protein SMESG000076173.1 POU2/3 smed_ncbi_20200123 PMID:21937596
Scimone et al., 2011
proximal tubule SMED30011282 slc43a-7 SMESG000075262.1 Smed-slc43a-7 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30007332 slc6a-17 SMESG000054997.1 Smed-slc6a-17 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30018526 slc25a-22 SMESG000074801.1 Smed-slc25a-22 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30000014 slc20a-1 SMESG000012546.1 Smed-slc20a-1 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30002205 slc13a-7 SMESG000041354.1 Smed-slc13a-7 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30009145 slc20a-2 SMESG000029269.1 Smed-slc20a-2 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30000756 EGFR-5 SMESG000044603.1 EGFR-5 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30018104 slc5a-4 SMESG000034669.1 Smed-slc5a-4 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30008385 Solute carrier family 13 member 2 SMESG000041335.1 Smed-slc13a-2 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30028480 slc22a-3 SMESG000031472.1 Smed-slc22a-3 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30020825 Protein I'm not dead yet SMESG000041335.1 Smed-slc13a-2 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30029757 slc26a-5 SMESG000052053.1 SMESG000052030.1 Smed-slc26a-5 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30024134 slc22a-5 SMESG000064528.1 Smed-slc22a-5 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30020778 slc22a-6 SMESG000020910.1 Smed-slc22a-6 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30033245 Innexin SMESG000061679.1 SMED30033245 smed_20140614 PMID:21828097
Rink et al., 2011
proximal tubule SMED30033245 Innexin SMESG000061679.1 SMED30033245 smed_20140614 PMID:21828097
Rink et al., 2011
proximal tubule SMED30013493 slc5a-2 SMESG000013622.1 Smed-slc5a-2 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30001319 slc24a-8 SMESG000030115.1 Smed-slc24a-8 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30013800 slc15a-3 SMESG000042203.1 Smed-slc15a-3 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30014181 slc23a-2 SMESG000066926.1 SMESG000066923.1 SMESG000066912.1 SMESG000066905.1 Smed-slc23a-2 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30000950 slc16a-22 SMESG000077590.1 Smed-slc16a-22 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30007967 slc30a-3 SMESG000022672.1 Smed-slc30a-3 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30003880 slc1a-3 SMESG000046414.1 Smed-slc1a-3 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30032055 slc23a-1 SMESG000066904.1 Smed-slc23a-1 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30024279 slc44a-3 SMESG000065604.1 SMESG000015886.1 Smed-slc44a-3 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30029849 slc24a-5 SMESG000022809.1 Smed-slc24a-5 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30028793 slc28a-1 SMESG000057282.1 Smed-slc28a-1 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30025831 slc28a-3 SMESG000057286.1 Smed-slc28a-3 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30024930 slc15a-2 SMESG000011953.1 Smed-slc15a-2 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30029814 slc17a-3 SMESG000066847.1 Smed-slc17a-3 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30022974 slc17a-5 SMESG000060615.1 Smed-slc17a-5 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30031015 slc6a-13 SMESG000079286.1 SMESG000079280.1 SMESG000042086.1 SMESG000017839.1 Smed-slc6a-13 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
proximal tubule SMED30034376 slc6a-5 SMESG000042091.1 Smed-slc6a-5 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
Note: Hover over icons to view figure legend
↳adjacent to flame cell and distal tubule
↳contained in tail region, copulatory region, posterior region of the whole animal, parapharyngeal region, prepharyngeal region, head region, dorsal region of the whole animal and anterior region of the whole animal
↳develops from protonephridial progenitor cell
↳existence overlaps Stage 6, juvenile stage, asexual adult, adult hermaphrodite, Stage 8 and Stage 7
↳existence starts during or after Stage 6
↳part of protonephridia
→ flame cell adjacent to proximal tubule
→ proximal tubule epithelial cell part of proximal tubule
DEPICTED BY:
BROWSE PLANARIAN ONTOLOGY TREE (IN OLS):
Click on the '-' and '+' to collapse and expand term 'is a' and 'part of' relationships.
EXPLORE ONTOLOGY GRAPH:
Dynamically explore this term by selecting additional relationships to display (checkboxes on the right). Expand nodes by double-clicking on it . Single-click on a node to display the definition below the graph.
Embryonic Molecular Fate Mapping
All experimental data displayed here is from Davies et. al., 2017, Smed Embryogenesis Molecular Staging Resource
IN SITU HYBRIDIZATION DATA:
Smed ID | Accession | Name | Alias | Expressed during stage(s) | Tissue/Pattern | Images |
---|---|---|---|---|---|---|
SMED30030007 | Rootletin | H.2.8b, crocc | Stage 5, Stage 6, Stage 7, Stage 8 | protonephridia, renal system, integumental system, Category 5 cell, proximal tubule | ![]() |
Click to see image symbols and abbreviations
Abbreviation or symbol | Definition |
---|---|
O | oral hemisphere |
A | aboral hemisphere |
D | dorsal |
V | ventral |
L | lateral |
black arrowhead | embryonic pharynx |
red arrowhead | definitive pharynx |
black arrows | primitive gut |
yellow arrows | primitive ectoderm cells |
cyan arrows | brain |
cyan arrowheads | nerve cords |
blue arrowheads | eye progenitors (trail cells) |
purple arrowheads | eyes |
scale bar | 100 µm |
SEQUENCES:
smed_20140614 transcript sequences for genes validated by in situ hybridization (above).
>SMED30030007 ID=SMED30030007|Name=Rootletin|organism=Schmidtea mediterranea sexual|type=transcript|length=6612bp
GTTGTTTTTAAATCACTATTTTTTTTATTTCATCTGATTATAATTTTTTTTTATTGAAATTTGTATTTTGAAATTGGTGA
ACAATGAGTGAGATAGATTATTCCGCTATTGTTCGGAGACGCATTGGAGATATCGATGGGGATTCAAGTGAAGATTCCAG
TTCAAAGGGTTTGCTTCAAGTTAACTTGGAACTGAGAAAGCGCTTAGAGGAAGAACACAATGAGTATCGTAGAAAGCTGA
TAGTTTTCCAAGACAGCCAACAGAAACAAGCGCAATTGGTTCAAAGATTGCAGAAAAAGGTATTGCAATACAAAGAAAAA
TGCACGGAACTTGAATCTAAAATGCAATTTGGCGATTATGAGACTCGAAAAACGAAGTATGGAAGTCCAACGAATAACGG
CTATGGGTCGCGTAGTGAGAATCCCTACGACAATCTGGATTTGGAGAGCACACTCATTAAGTTAGAAGAGGAACAAAAAA
AAACAAATTATCTAACGGAGTTCAATGAACGGCTTCAAGAACAATTAACTCAAGCAACTCAATCAAACCAGAATTTGACG
AGAGACATCAGTAAGCTTTCCGAAGAATGGCAGAGATCAAGGGAGGAGCTTGAACAGAGAGAAAAAATTTGGCGAAATGA
AGAAATGTCATTTAATGACTATTTAGCATCTGAGCATTCGAATCTGCAAAATTTGCAACGCAATACGATAAATTTCCGCC
GTCAATTTATAGAATTGAAAGCTTCAACTGAACGGGAAATAAATAATTTGAAAAATGAATTCAACCGACAGGCACGCTGT
TTGCAAACTGCTTGTTCCAATCTTTCGTGCAACATGAAATCTGCAGAATCTAAACAACAATTGAGTACTGAACGAGAAAG
TCGGGACAAGTTGAATCTCGAAAATCAACTGCGAGAAAAAAACAGAGAATTAACTGATTACCAAACTCGGTATGAATGTG
AAATGACAGAATTGCAACACCGAGTGAAAGAATTAACAGTTCTCAGTGACAAACTGAAAATTCAAAACCTGGAAAAGGAT
CGAGCATTGACAGCTTTGCAAAGAATTAAGAATGGAGATACCGCAGGAGAAATAAATATGGAAGACAAAGCTACAAGAGT
TCTTATTGAAGACACAGAAAGTATGCATCAAGCACTTCGAAATATTTCTCAAGTAGTACTAAATGATTCTGACTATTTCG
ATGCAGAAGACACAGGATTTGAAACAGTTCGAAAGAATAATCGTTCGCCAAGTCCAAGGAGAAATCGTAGCGTCAGTCCT
AACTCAAGATCAGCTAAAACACCGCCATTTGCCGATGCAACGTATGCGGCGGTTCAGTCGGCTATAAATAAAAAATCTCT
ACAGATTCAAGAGCTTAAATCAAAATTAAACAGTTCTAAAGAGAGTTGTACAAACTTCAAAAGACAAATTGATGACAATG
AAAATGAACGTCGACGATTAGAGAATCAAGTTCTCGCCATGAGAGATGAAATTGAAAGTTTACGACGAGATAAAGATGAT
AGTTTTAGAGAAGCGGATCGGTTTAAAAATGCTCTGAACATCACTTCAAATGAACGAAGCCAATTGGAAAAGATTCGATC
ATCACTAAACGATCAAATTGAGCAGCAACTCACAGAAATTGAACGACTTAAGTCAGCCAATCACGAATTACAACGATTGA
GAGAGGCATTGGAAGATGAGCAAGAAGATACTAAAAAAGACTTAGAAAGACAAATTAAAGAAAGTGAAAGATGCCAACGA
TCGATTGATGTTTTGGAAGATAAAATAAGTCGATTTAAAGAAGACGTAGTTAATTACAAAGAGGCAATTAATAAATACCA
ATTAGAAAAAGAAGTATTGGTGCAAGAAAAGGATGAGATTGGTGATGCTTTAAGTCGTTGTGAAATTTCTAAAGCCGAAT
TAGAAATCGAGGTGAATAAACGGCAAACTATTGAAGTAAATTTGGAAGAAAACATTTCAAAATTATCCTCAGAAATCGAA
GAATTGAATGATAAGCGAGCTGAAAACCACAGAACTATTAAACAGCTGGAACATGAAAGAAGTTCTCTTTTGAATGAAAA
ACGATTTTTGGAACAAGAAAAAAGTGGTTTGAAAGATGAGCTTGTTCGATCTGAACAAGAGGCTCTTGGTTTGTCAAATG
AGAAAGCCATTCAACGTCAAAGAATCGAACAACTTGAAATTAATACAGAAAGATTAGAAGAAGAGTTATCGGAACTCAAT
CGAGAAAAGCTAGATCTTACTGAACAAATAGGCTGTTTGCAGAGGCAGAAATCGGCTCTTGCAGAAGAATTGTTGCAATG
TCGTAGAGAATTAGAACGATCTAATAACAGTGTCAACAACTTATCAAAAGAAAAGGAATATCTTACCAAAGAGAAAGGAG
AACTCGTCGTTCAAGTTACAGCTTGCGAAAGGGAAAATCGTCAACAGTCAGAAGTTATTGCTTCTTTGAATTCCGATAGA
GAACAACTGGAAGCTACTCTTTATGATGCTCAACAATTAATCATTCAGTTGGAAACTCGAAAAGAGCAATTAGAAGGCGA
AAACCAAGAGTTGATTGTGAAAAAAGAAAATCTAAATGGAGAACTAGTCAGATTACGACAAGAGTTTCAACTAGAATACG
AGAAGGTTGTTAATTCACGAGAACAATTAAATTGCAGATATCAACAAATGGATAAAGAATATAAGATGGCAATTCAACAA
GAGCGAGATTCTCATGCTGAAGATGTAGAAAGACTAACTAAGATAAACGAAAGCAATCGTCATGGATCTGAAAACGAACG
AGAAGAGCTTATTCATCGATTCAATATGGAGCGTGACGACATGATTCAAAATTACGAACAAGAGAAACAAGAAATGGCCC
AGGAAATCATGACGATCCAACGAGAACGAGATGACTCATTATTAATGGCGGAAAATGAAAAGCAGCAATCATTGAGTTTA
TTAGAACAAGAAAAATGTGCAATCAATGAAAAGCTTATCAAAACGCAATTTGAACTGCAATCGGTTGAGTCGGAATTGGA
TCGCATTAAAAAGGAGTCGTCCAATCGTCAGGAGCAAGACAAACAGAACATTGCCGGCTTGTCGAGTGAACTCAAATCAT
TTAGATCTCAATTTGAGGATAAATGCCAAAATCACGAAATGGAAGTTAAAAGCCTAAATAGTGGAATCAAGGATCTAACA
TTAATGAAAGATCAAGCTCTCAAAGAAGTCCATGATTTGCATACCGGATTAAAAATAGCTGAAGAAACCCGTGATAATTT
GCGTCGGGAAATCATGGAAATGAATCGGAAATTGAAAGAAGCTGAGGAAGCCAAAGAGCACTTAAAGCGTGAAATTAATG
AATTGAAACGTGGATTATGCGAAGAACAAAGGGAAAAAGAAAATGTTATTAACTCAAATGAGAATTTGAGAAAGAAAATT
AAAGATGTTGAAACAGAAAGAATTGATTTGCACAGACAAGTAACGGATTCCAAACAAAAGGTTGCAGTACAAGATGAACA
ATTGGTCAATTCCAAACAAGAGGTCAATGAGTTAAGAAACAATCTTAAAGACGTAGAAAAAGCTCGATTAGATGTCAAAA
GAGAGTTACAAGAACTCAGACGCCATATCAAAGAGCTAGATACGGAAAGGGGCAAATTGACTAAAGAAGTCAATGATTTG
CAAACTCGTGTTGCTAGAGATGAAGAAAAAGAGGATGAAGCTCGTCGGGAAAATTTCGGTCTCAAACAAAAAGTTGTTGA
AACGGAAGCTTCAAGAGAAGCCGTTCGTAAAGATCTTGCTAATGCTCAACGACATATTGTTGATTTGGAAAATGTTCTGC
AGAGCAAAGACAGAGATTTCAGTTCCATGGTGGAATCGAGCCGCCGGGATTATAGGAAACTTGCTGATGCGAGAAATAGC
CTGCAACAAGTATATGATACGATGGTGGCCGATAATAATGAGCTGAGAATTGCTCTCAGTGGAGCAGAAGGTCGGGTCAG
TGCTCTGGAGTCACACATCGCACGAGTTGAAGGAGCTAAGAAAGAAATTGAATTCAAATTGGCTTCTATCCATAGCTCAT
TGCGAAGGCTGATAGGATTCCGACAGGAGAATGTAGTTACTATTCGGTCGAGAAACAACTCCAAATCTCCAGTTAGAGGT
CGATCAGTTAGTCCTCTTAGAAGTAGGCCGGTGTCGCCAACCAAAGGATTTGACAATACCTATGCTACTACAACTGATGG
AAAAGGTAGCCCTATCCCGCGCACAGGGTCTCCGAGTTCTAAACGAAGGCAATTATCAAGATCTCCGTCTAATTGCGATT
TCAATCCAGTCGATATAAATCCAGAAGCAGTTCGTCTGGCCTTGCGAGAATTCGTACAGCAGTTGGTTGATGCTGAACGA
GATAGAGATGACGCTTTTGCTCAAGCTCGCAGCCTAGAATCTCGATTGAAAGAACAAGAAGAACAAAATGAATATGCTGA
AAACCGTTTACAACAACTACAACAAGCTCTGTGTGATGCAGAAGAAGACAAAAAAGGCATTGATGGAAGATTGTCATCAG
CCCAAACTGCCTTAATGATGCAAGAAGAGACTATTCGGCGCAATGAGAGAGATAGAAAAGCAATGGCGGAAAAGTTGAGT
AATTACGATAGAACATTTGCATCCATGGAATCAGAAAAACGACAATTGGAAGATCGGTTGAATAAATTCCGTCATCATGA
TGCCCGATTGGAAGAAGAACATAAGCAGAGCAAAAAAGCTATTGAAAATGCTGAAAATAGAATAACTCAGCTTCAGCTTG
CCAAGCGATCGTTAGAAGGAGATCTTCAAAGAATGAAAATGGCGTTGACAGATAAAGAAACAGAAACCGAAGTTTTGGAT
GACCGCGTAAATAGTTTACTCAAACAAATACAAGATCTCGAGGGAAAATCTCAATCACTTCAACTAACGATTGACAGAAT
GAGTGTCGCCCTTGCAAAAACTGAGGAAGAAGGCAGTTTTCATAAGGACAAAATGCAACAGTTGAATATGAGTTTGAGCA
CTCATTCACAACAACTGGAACAATTACAGAATAAGATTTCTCAATTACAAAAAGCACTCGGCAGTTCAGAACAAGATCGT
CGGCTCTTAGAGGAACGATTAGAAAGCTCTAAAGGAGCATTGCATGAGGCAAAACATCAAAATAATTTGTTGATGGAAAG
AATACAAATAATTCAATCCGATTTAAATGATTCGGAAAATCGTCGATCAGAATTGGAAGGATTAAATCGACAGAGTAACA
CTTTGATTGTACAAAGACAAGAAGCTGAACAAGAACTCAATCAAAAATATCAGAAATTGAACTCGGAGAAAAACACATTA
CAAGAGCGAGTGAATAGCATGCAACGAAATTTGGCTTTGGCAGAAGCAGAAAAACAAGAAATAATAAAAAACCACGGAAA
ATTGGAAAAGGATAGATCTGCCTTGAAAAAGAGTCTTGGAAAAGTTGAACGTCAGAAATTGAAAACCGAAGAAATTGCTA
GCAAAACTGTTTTTGAACGTTCAGAATTAGATCAAATTTTAAGGAGACTTGAAGATGAAAATTGTGAATTACAGAGACAA
GTTGGAATTCTTCAAAATCAATTAGCAGAAGCTGAGCAAGCTCACTGCCACCATTTGATGGAAATCAATTCCCGCCATCG
CCAGGAAATGTCCATGGAAATGGAGCATTTGAGAGCATCGAATGTTCAAATAGAACGAACTCTAGAAGGCAGAGAACGAG
CCCACAGACAAAGAGTTAAGGGTCTGGAAGAACAGATCTCCACCCTCAAAGACCAGCTGACTCATGAAATGCAGAGGCGG
ATGGATAGTGGATATTACGAGTCTACCAGAAAGTCTAATCAATACGATTCAACTGGTGACTTGCGACATGTTCTGGATTC
CAGTTTAACTCGAGTTGCAAAAGACCCTCAACTGGACGCAATGCTACTGGAAACCGAAGCCAGGCGACTCGATGAGTCGA
TATTCATGTGTGGCAGTCGTGATCAGTCTCCGACCCGGCAGAAGCGAATCGAAATGTCAAAGAAGTCCGCAGCCCCTAAC
AATTCCAATCGGCGATTAACTGCCGGCCGTCGCAAATGAACTCGGCCTGTTCCAGTCCGTCCAGAGATGTTATGAAGCCA
CTTTTTAGATGCGTGAGTGTGAGTTCGTGTTGGTGACTGATTCATTTTTAGTAAACAGATTCTGGATTTTTGTTTTTATT
GATAGTGTAATTTCCTAATGCAGATCTGATAGTTGACTTGTTGTTCTTACGTATTCGGTATTTGTGATTCACATAGTCTG
TCATTGTTACTGTGATTTATCCTCTGTGTGACTTTTGTGATTTACTTACTTTATTGCCCCTATAATCAATAAATGGATTT
ATCGATAGTTCAGCCCTCCCCTCCAGCCCTCGTTTTGGGATCCGTAAATTTTGTTTCAATTGAGATCATTATAGTGATTT
TATTCCTTCGAAACCAAACCTTTGGGAGGGACATAAAATTAAATTATTGATTTTTTATTATCTTAGAAGTGAAAGATGTT
TATTTCCCAAATTAACTAATATCAATAATAACTTTAATTTATATCTTCATTA
PAGE: Planarian Anatomy Gene Expression
These transcripts were reported as being expressed in proximal tubule. Click this link to learn more about PAGE.
PAGE Curations: 38
PLANA Term | Reference Transcript | Description | Gene Models | Published Transcript | Transcriptome | Publication | Specimen | Lifecycle | Evidence |
---|---|---|---|---|---|---|---|---|---|
proximal tubule | SMED30000014 | slc20a-1 | SMESG000012546.1 | dd_Smed_v4_1270_0_1 | dd_Smed_v4 | PMID:29674431 Fincher et al., 2018 | ![]() | ![]() | ![]() |
proximal tubule | SMED30030379 | POU domain protein | SMESG000076173.1 | SMED30030379 | smed_20140614 | PMID:28072387 Davies et al., 2017 | ![]() | ![]() | ![]() |
proximal tubule | SMED30030379 | POU domain protein | SMESG000076173.1 | SMED30030379 | smed_20140614 | PMID:28072387 Davies et al., 2017 | ![]() | ![]() | ![]() |
proximal tubule | SMED30030379 | POU domain protein | SMESG000076173.1 | SMED30030379 | smed_20140614 | PMID:28072387 Davies et al., 2017 | ![]() | ![]() | ![]() |
proximal tubule | SMED30030379 | POU domain protein | SMESG000076173.1 | POU2/3 | smed_ncbi_20200123 | PMID:21937596 Scimone et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30011282 | slc43a-7 | SMESG000075262.1 | Smed-slc43a-7 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30007332 | slc6a-17 | SMESG000054997.1 | Smed-slc6a-17 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30018526 | slc25a-22 | SMESG000074801.1 | Smed-slc25a-22 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30000014 | slc20a-1 | SMESG000012546.1 | Smed-slc20a-1 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30002205 | slc13a-7 | SMESG000041354.1 | Smed-slc13a-7 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30009145 | slc20a-2 | SMESG000029269.1 | Smed-slc20a-2 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30000756 | EGFR-5 | SMESG000044603.1 | EGFR-5 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30018104 | slc5a-4 | SMESG000034669.1 | Smed-slc5a-4 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30008385 | Solute carrier family 13 member 2 | SMESG000041335.1 | Smed-slc13a-2 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30028480 | slc22a-3 | SMESG000031472.1 | Smed-slc22a-3 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30020825 | Protein I'm not dead yet | SMESG000041335.1 | Smed-slc13a-2 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30029757 | slc26a-5 | SMESG000052053.1 SMESG000052030.1 | Smed-slc26a-5 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30024134 | slc22a-5 | SMESG000064528.1 | Smed-slc22a-5 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30020778 | slc22a-6 | SMESG000020910.1 | Smed-slc22a-6 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30033245 | Innexin | SMESG000061679.1 | SMED30033245 | smed_20140614 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30033245 | Innexin | SMESG000061679.1 | SMED30033245 | smed_20140614 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30013493 | slc5a-2 | SMESG000013622.1 | Smed-slc5a-2 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30001319 | slc24a-8 | SMESG000030115.1 | Smed-slc24a-8 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30013800 | slc15a-3 | SMESG000042203.1 | Smed-slc15a-3 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30014181 | slc23a-2 | SMESG000066926.1 SMESG000066923.1 SMESG000066912.1 SMESG000066905.1 | Smed-slc23a-2 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30000950 | slc16a-22 | SMESG000077590.1 | Smed-slc16a-22 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30007967 | slc30a-3 | SMESG000022672.1 | Smed-slc30a-3 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30003880 | slc1a-3 | SMESG000046414.1 | Smed-slc1a-3 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30032055 | slc23a-1 | SMESG000066904.1 | Smed-slc23a-1 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30024279 | slc44a-3 | SMESG000065604.1 SMESG000015886.1 | Smed-slc44a-3 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30029849 | slc24a-5 | SMESG000022809.1 | Smed-slc24a-5 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30028793 | slc28a-1 | SMESG000057282.1 | Smed-slc28a-1 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30025831 | slc28a-3 | SMESG000057286.1 | Smed-slc28a-3 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30024930 | slc15a-2 | SMESG000011953.1 | Smed-slc15a-2 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30029814 | slc17a-3 | SMESG000066847.1 | Smed-slc17a-3 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30022974 | slc17a-5 | SMESG000060615.1 | Smed-slc17a-5 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30031015 | slc6a-13 | SMESG000079286.1 SMESG000079280.1 SMESG000042086.1 SMESG000017839.1 | Smed-slc6a-13 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
proximal tubule | SMED30034376 | slc6a-5 | SMESG000042091.1 | Smed-slc6a-5 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |