distal tubule
▻ Planarian Anatomy Ontology Class Overview
▻ Embryonic Molecular Fate Mapping
▻ In Situ Hybridization Data
▻ Sequences
▻ PAGE: Planarian Anatomy Gene Expression
Planarian Anatomy Ontology Class Overview
For more information about the ontology visit PLANA Overview
NAME:
distal tubule
DEFINITON:
Sinusoidal, non-ciliated tubules connected to proximal tubules within the parenchyma. Tubules are formed via intercellular junctions between two epithelial cells.
TERM DEFINITION CITATIONS:
PMID:21828097
TERM CITATIONS:
Expand publication list
TERM ID:
PLANA:0000053
ABOUT THIS TERM:
distal tubule
↳is a material entity and tissue ↳adjacent to collecting duct
↳contained in tail region, copulatory region, posterior region of the whole animal, parapharyngeal region, prepharyngeal region, head region, dorsal region of the whole animal and anterior region of the whole animal
↳develops from protonephridial progenitor cell
↳existence overlaps juvenile stage, asexual adult and adult hermaphrodite
↳part of protonephridia
→ proximal tubule and collecting duct adjacent to distal tubule
→ distal tubule epithelial cell part of distal tubule
DEPICTED BY:
BROWSE PLANARIAN ONTOLOGY TREE (IN OLS):
Click on the '-' and '+' to collapse and expand term 'is a' and 'part of' relationships.
EXPLORE ONTOLOGY GRAPH:
Dynamically explore this term by selecting additional relationships to display (checkboxes on the right). Expand nodes by double-clicking on it . Single-click on a node to display the definition below the graph.
Embryonic Molecular Fate Mapping
All experimental data displayed here is from Davies et. al., 2017, Smed Embryogenesis Molecular Staging Resource
IN SITU HYBRIDIZATION DATA:
Smed ID Accession Name Alias Expressed during stage(s) Tissue/Pattern Images SMED30021661 Carbonic anhydrase 7 CAVII-1 Stage 6, Stage 7, Stage 8 distal tubule, protonephridia, renal system 
Click to see image symbols and abbreviations
Abbreviation or symbol Definition O oral hemisphere A aboral hemisphere D dorsal V ventral L lateral black arrowhead embryonic pharynx red arrowhead definitive pharynx black arrows primitive gut yellow arrows primitive ectoderm cells cyan arrows brain cyan arrowheads nerve cords blue arrowheads eye progenitors (trail cells) purple arrowheads eyes scale bar 100 µm
SEQUENCES:
smed_20140614 transcript sequences for genes validated by in situ hybridization (above).
>SMED30008552 ID=SMED30008552|Name=Carbonic anhydrase 7|organism=Schmidtea mediterranea sexual|type=transcript|length=911bp
CCGATCTAAATAATTTAATTCAATAAATAATTTCAACTAAAGTTTTTATGATTTCTGAAGATTGGGGATATGGACCTGAG
AACGGTCCACATTTATGGCACAAATCGTATTCCAGTGCGGGAGGATGTTCCCAATCTCCTATCAATATAGATCTTTCACA
GACAAAATACGATATGACTTTAAATTTACATCCTTTAAAAATATGCATTGATAGTTCGAGGACATCAAGTCAGACTTTGG
TATTTACAGGACATAATTTCCGAATCGACTGTGAAGGAGCACTATGCGCATCGGGAGGCCCAATTCCCTATGGTCAAATG
TACAAAATTTCCCAAATTGTGTTTCATTGGGGCAGTACAATTTATGGAGGATCTGAACATTTGATAAATTGTTTTCAATT
CCCATGTGAATGCCAAATGACCTGCTACAATGCCACTCGTTATAGGTGCTTCAATGAGGCGGTAAATAAAAGAGATGGGC
TAATTATCCTATCTACAATGATATTGGGAACAAAAATAAAACCCTCGATCGTTTATTGGGTCCTTTGACGTCGATTCACT
TTTTCAAACACCATGACTTCCGGCAAGAAACCGAACTGTTAGATTTGAAATGTCTTTTACCAGATTGCATCAATCGATAC
TTCACCTACACTGGGTCATTGACTACCCCACCTTGCTATGAAACTGTTACGTGGATCATATTCGAAGGATCCAACACAAT
CAGTGAGGATCAACTAAATCTCATGCAGAAAGTTCACGTAGCCGACGGCTGTAATGGCTTTGACAACTTCAGACCGGTTT
GCTCACTCGGCCAAAGAATCATTACCAGAAATTTTGTTTGAGCCTTTTTTGAACTTGATTTATTTAAATTTTATTTTTTT
AATTGCTACTGTAGTGGATGTTATGGGGAAT
>SMED30021661 ID=SMED30021661|Name=Carbonic anhydrase 7|organism=Schmidtea mediterranea sexual|type=transcript|length=1073bp
CATACATATATATATATATATATTGAGACTATTCATTTTTTTCCATACAAAATTCAAACAAAATGAAACCATTTCTATTT
CTATTTTTATTTCTTGTCTCATCTCTTGATCTGAAGATCACCGAGGCTTCAGGCACCGGAAATTGGGGCTATACGTCAAC
CAGTGACATCAAAGGCCCCTCGGACTGGAAAGACATTAATCCAACTTGCGACGGAGCTCGGCAATCACCGATTGATATCG
TGACAAGAAGTGCGGTTTATTTGAAAGATTTACAAAGGATTGAAATTAAAAAAATTGACAACTTTGCTAACTTTTCCACT
CTCGAAAGACATGAAACCTCTATTTACTTAAAGCTTAATAACAGTTGGGGAATCACTTTCGGAGGAAATCAATGCCTAAG
ACCTGACTCCATTCATTGGCATTGGGGATCCAAGGGTACTTTAGGATCGGAACACTCTCTAGATGGGAAGCATTATCCAA
TAGAAGGCCATCTGTTGTCATATAATTGTATGAAATACAGTTCTTTGAATGAAGCAAAATCGAGTCCGGAAGGTCTTTAT
GTAATTGGTATTTTTTATAAAATCGGAAAAAAAAATATGTTAATTGACAAAATTATCCCGGCAATGCAAAGTCTGATTTC
CAGTAGTGATATCTCGAGCGTGATCATTAACGAGATTTCGGTGGAGGAAATTCTACCGAAAAATTTGGACAAGTATTATC
AATATGACGGCTCATTGACGACCCCTCCATGTACAGAAAACGTCAGGTGGACAGTGCTAAATGAAGAGCTAACTATAGAT
GAATCTCAATTGGAAGTTTTTCGCCAATTCGACTTCGAATCTCCCAATTCTGGGGAAATGGAGAACAATTTCCGACCAAT
CTTATCAAAGTTCAATGAAAAACGAACAATATATTCCTCATTCAAAACGGGGTCCAGTTAGACAATCTTATTATGGGTGC
TTTGTGCAATCTTCATGTGCCTGAATAGTCGATAATATGATGTTCATAACACTCAAATAGCACATTTAATTCATTTTGAT
TAACACTATTTTTCATTTCATTTATGTCAATTA
PAGE: Planarian Anatomy Gene Expression
These transcripts were reported as being expressed in distal tubule. Click this link to learn more about PAGE.
PAGE Curations: 11
PLANA Term Reference Transcript Description Gene Models Published Transcript Transcriptome Publication Specimen Lifecycle Evidence distal tubule SMED30021661 Carbonic anhydrase 7 SMESG000017176.1 SMESG000017171.1 dd_Smed_v4_4841_0_1 dd_Smed_v4 PMID:29674431
Fincher et al., 2018 
distal tubule SMED30021661 Carbonic anhydrase 7 SMESG000017176.1 SMESG000017171.1 SMED30021661 smed_20140614 PMID:28072387
Davies et al., 2017 
distal tubule SMED30021661 Carbonic anhydrase 7 SMESG000017176.1 SMESG000017171.1 SMED30021661 smed_20140614 PMID:28072387
Davies et al., 2017 
distal tubule SMED30021661 Carbonic anhydrase 7 SMESG000017176.1 SMESG000017171.1 SMED30021661 smed_20140614 PMID:28072387
Davies et al., 2017 
distal tubule SMED30030379 POU domain protein SMESG000076173.1 POU2/3 smed_ncbi_20200123 PMID:21937596
Scimone et al., 2011 distal tubule SMED30002205 slc13a-7 SMESG000041354.1 Smed-slc13a-7 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011 distal tubule SMED30016293 slc44a-2 SMESG000015872.1 Smed-slc44a-2 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011 distal tubule SMED30003346 slc12a-4 SMESG000019076.1 SMESG000052056.1 SMESG000025956.1 Smed-slc12a-4 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011 distal tubule SMED30021661 Carbonic anhydrase 7 SMESG000017176.1 SMESG000017171.1 SMED30021661 smed_20140614 PMID:21828097
Rink et al., 2011 distal tubule SMED30029814 slc17a-3 SMESG000066847.1 Smed-slc17a-3 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011 distal tubule SMED30023180 slc6a-12 SMESG000055640.1 Smed-slc6a-12 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
Note: Hover over icons to view figure legend
↳adjacent to collecting duct
↳contained in tail region, copulatory region, posterior region of the whole animal, parapharyngeal region, prepharyngeal region, head region, dorsal region of the whole animal and anterior region of the whole animal
↳develops from protonephridial progenitor cell
↳existence overlaps juvenile stage, asexual adult and adult hermaphrodite
↳part of protonephridia
→ proximal tubule and collecting duct adjacent to distal tubule
→ distal tubule epithelial cell part of distal tubule
DEPICTED BY:
BROWSE PLANARIAN ONTOLOGY TREE (IN OLS):
Click on the '-' and '+' to collapse and expand term 'is a' and 'part of' relationships.
EXPLORE ONTOLOGY GRAPH:
Dynamically explore this term by selecting additional relationships to display (checkboxes on the right). Expand nodes by double-clicking on it . Single-click on a node to display the definition below the graph.
Embryonic Molecular Fate Mapping
All experimental data displayed here is from Davies et. al., 2017, Smed Embryogenesis Molecular Staging Resource
IN SITU HYBRIDIZATION DATA:
| Smed ID | Accession | Name | Alias | Expressed during stage(s) | Tissue/Pattern | Images |
|---|---|---|---|---|---|---|
| SMED30021661 | Carbonic anhydrase 7 | CAVII-1 | Stage 6, Stage 7, Stage 8 | distal tubule, protonephridia, renal system | |
Click to see image symbols and abbreviations
| Abbreviation or symbol | Definition |
|---|---|
| O | oral hemisphere |
| A | aboral hemisphere |
| D | dorsal |
| V | ventral |
| L | lateral |
| black arrowhead | embryonic pharynx |
| red arrowhead | definitive pharynx |
| black arrows | primitive gut |
| yellow arrows | primitive ectoderm cells |
| cyan arrows | brain |
| cyan arrowheads | nerve cords |
| blue arrowheads | eye progenitors (trail cells) |
| purple arrowheads | eyes |
| scale bar | 100 µm |
SEQUENCES:
smed_20140614 transcript sequences for genes validated by in situ hybridization (above).
>SMED30008552 ID=SMED30008552|Name=Carbonic anhydrase 7|organism=Schmidtea mediterranea sexual|type=transcript|length=911bp
CCGATCTAAATAATTTAATTCAATAAATAATTTCAACTAAAGTTTTTATGATTTCTGAAGATTGGGGATATGGACCTGAG
AACGGTCCACATTTATGGCACAAATCGTATTCCAGTGCGGGAGGATGTTCCCAATCTCCTATCAATATAGATCTTTCACA
GACAAAATACGATATGACTTTAAATTTACATCCTTTAAAAATATGCATTGATAGTTCGAGGACATCAAGTCAGACTTTGG
TATTTACAGGACATAATTTCCGAATCGACTGTGAAGGAGCACTATGCGCATCGGGAGGCCCAATTCCCTATGGTCAAATG
TACAAAATTTCCCAAATTGTGTTTCATTGGGGCAGTACAATTTATGGAGGATCTGAACATTTGATAAATTGTTTTCAATT
CCCATGTGAATGCCAAATGACCTGCTACAATGCCACTCGTTATAGGTGCTTCAATGAGGCGGTAAATAAAAGAGATGGGC
TAATTATCCTATCTACAATGATATTGGGAACAAAAATAAAACCCTCGATCGTTTATTGGGTCCTTTGACGTCGATTCACT
TTTTCAAACACCATGACTTCCGGCAAGAAACCGAACTGTTAGATTTGAAATGTCTTTTACCAGATTGCATCAATCGATAC
TTCACCTACACTGGGTCATTGACTACCCCACCTTGCTATGAAACTGTTACGTGGATCATATTCGAAGGATCCAACACAAT
CAGTGAGGATCAACTAAATCTCATGCAGAAAGTTCACGTAGCCGACGGCTGTAATGGCTTTGACAACTTCAGACCGGTTT
GCTCACTCGGCCAAAGAATCATTACCAGAAATTTTGTTTGAGCCTTTTTTGAACTTGATTTATTTAAATTTTATTTTTTT
AATTGCTACTGTAGTGGATGTTATGGGGAAT
>SMED30021661 ID=SMED30021661|Name=Carbonic anhydrase 7|organism=Schmidtea mediterranea sexual|type=transcript|length=1073bp
CATACATATATATATATATATATTGAGACTATTCATTTTTTTCCATACAAAATTCAAACAAAATGAAACCATTTCTATTT
CTATTTTTATTTCTTGTCTCATCTCTTGATCTGAAGATCACCGAGGCTTCAGGCACCGGAAATTGGGGCTATACGTCAAC
CAGTGACATCAAAGGCCCCTCGGACTGGAAAGACATTAATCCAACTTGCGACGGAGCTCGGCAATCACCGATTGATATCG
TGACAAGAAGTGCGGTTTATTTGAAAGATTTACAAAGGATTGAAATTAAAAAAATTGACAACTTTGCTAACTTTTCCACT
CTCGAAAGACATGAAACCTCTATTTACTTAAAGCTTAATAACAGTTGGGGAATCACTTTCGGAGGAAATCAATGCCTAAG
ACCTGACTCCATTCATTGGCATTGGGGATCCAAGGGTACTTTAGGATCGGAACACTCTCTAGATGGGAAGCATTATCCAA
TAGAAGGCCATCTGTTGTCATATAATTGTATGAAATACAGTTCTTTGAATGAAGCAAAATCGAGTCCGGAAGGTCTTTAT
GTAATTGGTATTTTTTATAAAATCGGAAAAAAAAATATGTTAATTGACAAAATTATCCCGGCAATGCAAAGTCTGATTTC
CAGTAGTGATATCTCGAGCGTGATCATTAACGAGATTTCGGTGGAGGAAATTCTACCGAAAAATTTGGACAAGTATTATC
AATATGACGGCTCATTGACGACCCCTCCATGTACAGAAAACGTCAGGTGGACAGTGCTAAATGAAGAGCTAACTATAGAT
GAATCTCAATTGGAAGTTTTTCGCCAATTCGACTTCGAATCTCCCAATTCTGGGGAAATGGAGAACAATTTCCGACCAAT
CTTATCAAAGTTCAATGAAAAACGAACAATATATTCCTCATTCAAAACGGGGTCCAGTTAGACAATCTTATTATGGGTGC
TTTGTGCAATCTTCATGTGCCTGAATAGTCGATAATATGATGTTCATAACACTCAAATAGCACATTTAATTCATTTTGAT
TAACACTATTTTTCATTTCATTTATGTCAATTA
PAGE: Planarian Anatomy Gene Expression
These transcripts were reported as being expressed in distal tubule. Click this link to learn more about PAGE.
PAGE Curations: 11
| PLANA Term | Reference Transcript | Description | Gene Models | Published Transcript | Transcriptome | Publication | Specimen | Lifecycle | Evidence |
|---|---|---|---|---|---|---|---|---|---|
| distal tubule | SMED30021661 | Carbonic anhydrase 7 | SMESG000017176.1 SMESG000017171.1 | dd_Smed_v4_4841_0_1 | dd_Smed_v4 | PMID:29674431 Fincher et al., 2018 | | | |
| distal tubule | SMED30021661 | Carbonic anhydrase 7 | SMESG000017176.1 SMESG000017171.1 | SMED30021661 | smed_20140614 | PMID:28072387 Davies et al., 2017 | | | |
| distal tubule | SMED30021661 | Carbonic anhydrase 7 | SMESG000017176.1 SMESG000017171.1 | SMED30021661 | smed_20140614 | PMID:28072387 Davies et al., 2017 | | | |
| distal tubule | SMED30021661 | Carbonic anhydrase 7 | SMESG000017176.1 SMESG000017171.1 | SMED30021661 | smed_20140614 | PMID:28072387 Davies et al., 2017 | | | |
| distal tubule | SMED30030379 | POU domain protein | SMESG000076173.1 | POU2/3 | smed_ncbi_20200123 | PMID:21937596 Scimone et al., 2011 | | | |
| distal tubule | SMED30002205 | slc13a-7 | SMESG000041354.1 | Smed-slc13a-7 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | | | |
| distal tubule | SMED30016293 | slc44a-2 | SMESG000015872.1 | Smed-slc44a-2 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | | | |
| distal tubule | SMED30003346 | slc12a-4 | SMESG000019076.1 SMESG000052056.1 SMESG000025956.1 | Smed-slc12a-4 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | | | |
| distal tubule | SMED30021661 | Carbonic anhydrase 7 | SMESG000017176.1 SMESG000017171.1 | SMED30021661 | smed_20140614 | PMID:21828097 Rink et al., 2011 | | | |
| distal tubule | SMED30029814 | slc17a-3 | SMESG000066847.1 | Smed-slc17a-3 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | | | |
| distal tubule | SMED30023180 | slc6a-12 | SMESG000055640.1 | Smed-slc6a-12 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | | | |
