collecting duct
▻ Planarian Anatomy Ontology Class Overview
▻ PAGE: Planarian Anatomy Gene Expression
Planarian Anatomy Ontology Class Overview
For more information about the ontology visit PLANA Overview
NAME:
collecting duct
DEFINITON:
Non-ciliated tubules associated with the distal tubules, which cross the basement membrane and terminate in the dorsal epidermis.
TERM DEFINITION CITATIONS:
PMID:26057828
TERM CITATIONS:
Expand publication list
TERM ID:
PLANA:0000047
ABOUT THIS TERM:
collecting duct
↳is a material entity and tissue ↳adjacent to distal tubule
↳contained in tail region, copulatory region, posterior region of the whole animal, parapharyngeal region, prepharyngeal region, head region, dorsal region of the whole animal and anterior region of the whole animal
↳existence overlaps juvenile stage, asexual adult and adult hermaphrodite
↳part of renal system
→ distal tubule adjacent to collecting duct
→ collecting duct epithelial cell part of collecting duct
DEPICTED BY:
BROWSE PLANARIAN ONTOLOGY TREE (IN OLS):
Click on the '-' and '+' to collapse and expand term 'is a' and 'part of' relationships.
EXPLORE ONTOLOGY GRAPH:
Dynamically explore this term by selecting additional relationships to display (checkboxes on the right). Expand nodes by double-clicking on it . Single-click on a node to display the definition below the graph.
PAGE: Planarian Anatomy Gene Expression
These transcripts were reported as being expressed in collecting duct. Click this link to learn more about PAGE.
PAGE Curations: 17
PLANA Term Reference Transcript Description Gene Models Published Transcript Transcriptome Publication Specimen Lifecycle Evidence collecting duct SMED30001861 mitochondrial sodium/calcium exchanger protein SMESG000022808.1 dd_Smed_v4_20334_0_1 dd_Smed_v4 PMID:29674431
Fincher et al., 2018
collecting duct SMED30008728 mitochondrial sodium/calcium exchanger protein SMESG000022802.1 Smed-slc24a-2 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
collecting duct SMED30018300 slc42a-2 SMESG000005978.1 Smed-slc42a-2 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
collecting duct SMED30001319 slc24a-8 SMESG000030115.1 Smed-slc24a-8 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
collecting duct SMED30017502 slc6a-9 SMESG000009986.1 Smed-slc6a-9 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
collecting duct SMED30017190 slc4a-7 SMESG000063821.1 Smed-slc4a-7 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
collecting duct SMED30017949 slc7a-6 SMESG000051755.1 Smed-slc7a-6 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
collecting duct SMED30012139 slc2a-2 SMESG000081673.1 Smed-slc2a-2 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
collecting duct SMED30013820 slc24a-2 SMESG000022802.1 Smed-slc24a-2 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
collecting duct SMED30007967 slc30a-3 SMESG000022672.1 Smed-slc30a-3 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
collecting duct SMED30003346 slc12a-4 SMESG000019076.1 SMESG000052056.1 SMESG000025956.1 Smed-slc12a-4 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
collecting duct SMED30035834 slc4a-2 SMESG000057490.1 Smed-slc4a-2 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
collecting duct SMED30022804 slc12a-1 SMESG000043221.1 SMESG000043220.1 Smed-slc12a-1 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
collecting duct SMED30030586 slc10a-2 SMESG000064833.1 Smed-slc10a-2 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
collecting duct SMED30025137 slc28a-2 SMESG000077408.1 Smed-slc28a-2 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
collecting duct SMED30027012 slc24a-7 SMESG000022803.1 Smed-slc24a-7 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
collecting duct SMED30034376 slc6a-5 SMESG000042091.1 Smed-slc6a-5 smed_ncbi_20200123 PMID:21828097
Rink et al., 2011
Note: Hover over icons to view figure legend
↳adjacent to distal tubule
↳contained in tail region, copulatory region, posterior region of the whole animal, parapharyngeal region, prepharyngeal region, head region, dorsal region of the whole animal and anterior region of the whole animal
↳existence overlaps juvenile stage, asexual adult and adult hermaphrodite
↳part of renal system
→ distal tubule adjacent to collecting duct
→ collecting duct epithelial cell part of collecting duct
DEPICTED BY:
BROWSE PLANARIAN ONTOLOGY TREE (IN OLS):
Click on the '-' and '+' to collapse and expand term 'is a' and 'part of' relationships.
EXPLORE ONTOLOGY GRAPH:
Dynamically explore this term by selecting additional relationships to display (checkboxes on the right). Expand nodes by double-clicking on it . Single-click on a node to display the definition below the graph.
PAGE: Planarian Anatomy Gene Expression
These transcripts were reported as being expressed in collecting duct. Click this link to learn more about PAGE.
PAGE Curations: 17
PLANA Term | Reference Transcript | Description | Gene Models | Published Transcript | Transcriptome | Publication | Specimen | Lifecycle | Evidence |
---|---|---|---|---|---|---|---|---|---|
collecting duct | SMED30001861 | mitochondrial sodium/calcium exchanger protein | SMESG000022808.1 | dd_Smed_v4_20334_0_1 | dd_Smed_v4 | PMID:29674431 Fincher et al., 2018 | ![]() | ![]() | ![]() |
collecting duct | SMED30008728 | mitochondrial sodium/calcium exchanger protein | SMESG000022802.1 | Smed-slc24a-2 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
collecting duct | SMED30018300 | slc42a-2 | SMESG000005978.1 | Smed-slc42a-2 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
collecting duct | SMED30001319 | slc24a-8 | SMESG000030115.1 | Smed-slc24a-8 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
collecting duct | SMED30017502 | slc6a-9 | SMESG000009986.1 | Smed-slc6a-9 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
collecting duct | SMED30017190 | slc4a-7 | SMESG000063821.1 | Smed-slc4a-7 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
collecting duct | SMED30017949 | slc7a-6 | SMESG000051755.1 | Smed-slc7a-6 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
collecting duct | SMED30012139 | slc2a-2 | SMESG000081673.1 | Smed-slc2a-2 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
collecting duct | SMED30013820 | slc24a-2 | SMESG000022802.1 | Smed-slc24a-2 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
collecting duct | SMED30007967 | slc30a-3 | SMESG000022672.1 | Smed-slc30a-3 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
collecting duct | SMED30003346 | slc12a-4 | SMESG000019076.1 SMESG000052056.1 SMESG000025956.1 | Smed-slc12a-4 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
collecting duct | SMED30035834 | slc4a-2 | SMESG000057490.1 | Smed-slc4a-2 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
collecting duct | SMED30022804 | slc12a-1 | SMESG000043221.1 SMESG000043220.1 | Smed-slc12a-1 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
collecting duct | SMED30030586 | slc10a-2 | SMESG000064833.1 | Smed-slc10a-2 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
collecting duct | SMED30025137 | slc28a-2 | SMESG000077408.1 | Smed-slc28a-2 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
collecting duct | SMED30027012 | slc24a-7 | SMESG000022803.1 | Smed-slc24a-7 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |
collecting duct | SMED30034376 | slc6a-5 | SMESG000042091.1 | Smed-slc6a-5 | smed_ncbi_20200123 | PMID:21828097 Rink et al., 2011 | ![]() | ![]() | ![]() |