Palladin, cytoskeletal associated protein

Overview
NamePalladin, cytoskeletal associated protein
Smed IDSMED30036018
Length (bp)1165
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Palladin, cytoskeletal associated protein (SMED30036018) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Palladin, cytoskeletal associated protein (SMED30036018) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30036018

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30036018h1SMcG0018506 SmedASXL_011533SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30036018h1SMcG0018505 dd_Smed_v4_15790_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30036018h1SMcG0018505 dd_Smed_v4_15790_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30036018h1SMcG0018506 dd_Smed_v6_15790_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
cephalic gangliaSMED30036018h1SMcG0018506 SMED30036018smed_20140614PMID:24131630
März et al., 2013		whole organism asexual adult colorimetric in situ hybridization evidence
ventral nerve cordSMED30036018h1SMcG0018506 SMED30036018smed_20140614PMID:24131630
März et al., 2013		whole organism asexual adult colorimetric in situ hybridization evidence
neuronSMED30036018h1SMcG0018506 SMED30036018smed_20140614PMID:24131630
März et al., 2013		whole organism asexual adult colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Human
Match: PALLD (palladin, cytoskeletal associated protein [Source:HGNC Symbol;Acc:HGNC:17068])

HSP 1 Score: 55.8398 bits (133), Expect = 7.869e-9
Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = 1 
Query:  247 HLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAV--LHFPSISLADSSNYSCKASNSNGFIN 474
            H KI  GM +T  CRV G P+P +YW K+ K++ S + D     +  +    LH  + +L D  NY+  A+N  G I+
Sbjct:   78 HYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI-SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRIS 154
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Human
Match: TTN (titin [Source:HGNC Symbol;Acc:HGNC:12403])

HSP 1 Score: 56.6102 bits (135), Expect = 6.528e-8
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:  232 LKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNG 465
            + E E L+   G S++++C+V G PE TV W K   KL    E R + T  N A L F  +++ DS  Y+CKA NS G
Sbjct: 6082 VTELEPLEAAVGDSVSLQCQVAGTPEITVSWYKGDTKLRPTPEYRTYFT-NNVATLVFNKVNINDSGEYTCKAENSIG 6158
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Human
Match: TTN (titin [Source:HGNC Symbol;Acc:HGNC:12403])

HSP 1 Score: 56.6102 bits (135), Expect = 6.587e-8
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:  232 LKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNG 465
            + E E L+   G S++++C+V G PE TV W K   KL    E R + T  N A L F  +++ DS  Y+CKA NS G
Sbjct: 7009 VTELEPLEAAVGDSVSLQCQVAGTPEITVSWYKGDTKLRPTPEYRTYFT-NNVATLVFNKVNINDSGEYTCKAENSIG 7085
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Human
Match: TTN (titin [Source:HGNC Symbol;Acc:HGNC:12403])

HSP 1 Score: 56.6102 bits (135), Expect = 6.587e-8
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:  232 LKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNG 465
            + E E L+   G S++++C+V G PE TV W K   KL    E R + T  N A L F  +++ DS  Y+CKA NS G
Sbjct: 7009 VTELEPLEAAVGDSVSLQCQVAGTPEITVSWYKGDTKLRPTPEYRTYFT-NNVATLVFNKVNINDSGEYTCKAENSIG 7085
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Human
Match: TTN (titin [Source:HGNC Symbol;Acc:HGNC:12403])

HSP 1 Score: 56.6102 bits (135), Expect = 7.064e-8
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:  232 LKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNG 465
            + E E L+   G S++++C+V G PE TV W K   KL    E R + T  N A L F  +++ DS  Y+CKA NS G
Sbjct: 7326 VTELEPLEAAVGDSVSLQCQVAGTPEITVSWYKGDTKLRPTPEYRTYFT-NNVATLVFNKVNINDSGEYTCKAENSIG 7402
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Celegans
Match: ttn-1 (Titin homolog [Source:UniProtKB/Swiss-Prot;Acc:G4SLH0])

HSP 1 Score: 56.6102 bits (135), Expect = 2.534e-8
Identity = 32/121 (26.45%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:  265 GMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSNDQKDDW-TTKLNIKPCSENSRCQFRDCKILDNMVACR 624
            G+S+ +R +V G P+P + W K  +KL+ NEE  +   + ++ +L   +++ AD+  Y   A N +G  N   ++ V+Q+  +   K  +  + ++++ C +N R + R         ACR
Sbjct: 14954 GVSVELRAKVIGHPDPVISWTKAGQKLN-NEEKYMMRNEGDKFILRIANVTRADAGKYELTAINPSGQANAELELTVVQSTKTVGAKPKFNESPISVQTCEKN-RAELRASFSGTPAPACR 15072
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Celegans
Match: ttn-1 (Titin homolog [Source:UniProtKB/Swiss-Prot;Acc:G4SLH0])

HSP 1 Score: 56.6102 bits (135), Expect = 2.534e-8
Identity = 32/121 (26.45%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:  265 GMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSNDQKDDW-TTKLNIKPCSENSRCQFRDCKILDNMVACR 624
            G+S+ +R +V G P+P + W K  +KL+ NEE  +   + ++ +L   +++ AD+  Y   A N +G  N   ++ V+Q+  +   K  +  + ++++ C +N R + R         ACR
Sbjct: 14954 GVSVELRAKVIGHPDPVISWTKAGQKLN-NEEKYMMRNEGDKFILRIANVTRADAGKYELTAINPSGQANAELELTVVQSTKTVGAKPKFNESPISVQTCEKN-RAELRASFSGTPAPACR 15072
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Celegans
Match: ttn-1 (Titin homolog [Source:UniProtKB/Swiss-Prot;Acc:G4SLH0])

HSP 1 Score: 56.6102 bits (135), Expect = 2.556e-8
Identity = 32/121 (26.45%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:  265 GMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSNDQKDDW-TTKLNIKPCSENSRCQFRDCKILDNMVACR 624
            G+S+ +R +V G P+P + W K  +KL+ NEE  +   + ++ +L   +++ AD+  Y   A N +G  N   ++ V+Q+  +   K  +  + ++++ C +N R + R         ACR
Sbjct: 14969 GVSVELRAKVIGHPDPVISWTKAGQKLN-NEEKYMMRNEGDKFILRIANVTRADAGKYELTAINPSGQANAELELTVVQSTKTVGAKPKFNESPISVQTCEKN-RAELRASFSGTPAPACR 15087
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Celegans
Match: ttn-1 (Titin homolog [Source:UniProtKB/Swiss-Prot;Acc:G4SLH0])

HSP 1 Score: 56.6102 bits (135), Expect = 2.556e-8
Identity = 32/121 (26.45%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:  265 GMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSNDQKDDW-TTKLNIKPCSENSRCQFRDCKILDNMVACR 624
            G+S+ +R +V G P+P + W K  +KL+ NEE  +   + ++ +L   +++ AD+  Y   A N +G  N   ++ V+Q+  +   K  +  + ++++ C +N R + R         ACR
Sbjct: 14969 GVSVELRAKVIGHPDPVISWTKAGQKLN-NEEKYMMRNEGDKFILRIANVTRADAGKYELTAINPSGQANAELELTVVQSTKTVGAKPKFNESPISVQTCEKN-RAELRASFSGTPAPACR 15087
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Celegans
Match: ttn-1 (Titin homolog [Source:UniProtKB/Swiss-Prot;Acc:G4SLH0])

HSP 1 Score: 56.6102 bits (135), Expect = 2.600e-8
Identity = 32/121 (26.45%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:  265 GMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSNDQKDDW-TTKLNIKPCSENSRCQFRDCKILDNMVACR 624
            G+S+ +R +V G P+P + W K  +KL+ NEE  +   + ++ +L   +++ AD+  Y   A N +G  N   ++ V+Q+  +   K  +  + ++++ C +N R + R         ACR
Sbjct: 14543 GVSVELRAKVIGHPDPVISWTKAGQKLN-NEEKYMMRNEGDKFILRIANVTRADAGKYELTAINPSGQANAELELTVVQSTKTVGAKPKFNESPISVQTCEKN-RAELRASFSGTPAPACR 14661
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Fly
Match: bt (gene:FBgn0005666 transcript:FBtr0301340)

HSP 1 Score: 57.3806 bits (137), Expect = 1.938e-8
Identity = 25/77 (32.47%), Postives = 41/77 (53.25%), Query Frame = 1 
Query:  265 GMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKV 495
            G   T++C  +GKP PT  W++N K++  N       +K     LH  ++   D  +Y+C+A NS GF+N    +K+
Sbjct: 7268 GKDYTLQCAASGKPSPTARWLRNGKEIQMNGGRMTCDSKDGVFRLHISNVQTGDDGDYTCEAMNSLGFVNTSGYLKI 7344
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Fly
Match: bt (gene:FBgn0005666 transcript:FBtr0334483)

HSP 1 Score: 57.3806 bits (137), Expect = 2.006e-8
Identity = 25/77 (32.47%), Postives = 41/77 (53.25%), Query Frame = 1 
Query:  265 GMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKV 495
            G   T++C  +GKP PT  W++N K++  N       +K     LH  ++   D  +Y+C+A NS GF+N    +K+
Sbjct: 7201 GKDYTLQCAASGKPSPTARWLRNGKEIQMNGGRMTCDSKDGVFRLHISNVQTGDDGDYTCEAMNSLGFVNTSGYLKI 7277
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Fly
Match: bt (gene:FBgn0005666 transcript:FBtr0344988)

HSP 1 Score: 56.9954 bits (136), Expect = 2.112e-8
Identity = 25/77 (32.47%), Postives = 41/77 (53.25%), Query Frame = 1 
Query:  265 GMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKV 495
            G   T++C  +GKP PT  W++N K++  N       +K     LH  ++   D  +Y+C+A NS GF+N    +K+
Sbjct: 6937 GKDYTLQCAASGKPSPTARWLRNGKEIQMNGGRMTCDSKDGVFRLHISNVQTGDDGDYTCEAMNSLGFVNTSGYLKI 7013
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Fly
Match: bt (gene:FBgn0005666 transcript:FBtr0089793)

HSP 1 Score: 56.9954 bits (136), Expect = 2.113e-8
Identity = 25/77 (32.47%), Postives = 41/77 (53.25%), Query Frame = 1 
Query:  265 GMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKV 495
            G   T++C  +GKP PT  W++N K++  N       +K     LH  ++   D  +Y+C+A NS GF+N    +K+
Sbjct: 6983 GKDYTLQCAASGKPSPTARWLRNGKEIQMNGGRMTCDSKDGVFRLHISNVQTGDDGDYTCEAMNSLGFVNTSGYLKI 7059
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Fly
Match: bt (gene:FBgn0005666 transcript:FBtr0334482)

HSP 1 Score: 56.9954 bits (136), Expect = 2.167e-8
Identity = 25/77 (32.47%), Postives = 41/77 (53.25%), Query Frame = 1 
Query:  265 GMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKV 495
            G   T++C  +GKP PT  W++N K++  N       +K     LH  ++   D  +Y+C+A NS GF+N    +K+
Sbjct: 6762 GKDYTLQCAASGKPSPTARWLRNGKEIQMNGGRMTCDSKDGVFRLHISNVQTGDDGDYTCEAMNSLGFVNTSGYLKI 6838
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Zebrafish
Match: palld (palladin, cytoskeletal associated protein [Source:ZFIN;Acc:ZDB-GENE-041014-252])

HSP 1 Score: 56.9954 bits (136), Expect = 1.836e-9
Identity = 27/71 (38.03%), Postives = 36/71 (50.70%), Query Frame = 1 
Query:  247 HLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEED-RIFTTKKNEAVLHFPSISLADSSNYSCKASN 456
            H K+  GM +T  C+V G P+P VYW K+ K++    E  RI         LH  + SL D  NY+  A N
Sbjct:   87 HYKVFEGMPVTFSCKVMGDPKPKVYWFKDGKQISKRSEHYRISRDPDGTCSLHTAAASLDDDGNYTIMAGN 157
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Zebrafish
Match: palld (palladin, cytoskeletal associated protein [Source:ZFIN;Acc:ZDB-GENE-041014-252])

HSP 1 Score: 56.9954 bits (136), Expect = 4.050e-9
Identity = 27/71 (38.03%), Postives = 36/71 (50.70%), Query Frame = 1 
Query:  247 HLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEED-RIFTTKKNEAVLHFPSISLADSSNYSCKASN 456
            H K+  GM +T  C+V G P+P VYW K+ K++    E  RI         LH  + SL D  NY+  A N
Sbjct:  124 HYKVFEGMPVTFSCKVMGDPKPKVYWFKDGKQISKRSEHYRISRDPDGTCSLHTAAASLDDDGNYTIMAGN 194
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Zebrafish
Match: ccdc141 (coiled-coil domain containing 141 [Source:ZFIN;Acc:ZDB-GENE-081104-472])

HSP 1 Score: 57.7658 bits (138), Expect = 1.827e-8
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 1 
Query:  256 IISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSND-QKDDWTT 540
            ++ G  +T+   VTG PEPT+ W KN  KL +N+E    + K+ +  L   S ++ DS  Y   ASNS G ++    ++V  N +  D  K DW T
Sbjct: 1554 VMEGSPVTLEVEVTGFPEPTLTWFKNGHKL-ANDEHIELSHKEGKHALFIHSSAVRDSGQYVVTASNSAGTVSSSSMLQVKGNGTDLDVLKLDWHT 1648
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Zebrafish
Match: palld (palladin, cytoskeletal associated protein [Source:ZFIN;Acc:ZDB-GENE-041014-252])

HSP 1 Score: 56.9954 bits (136), Expect = 3.005e-8
Identity = 28/78 (35.90%), Postives = 40/78 (51.28%), Query Frame = 1 
Query:  244 EHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEED-RIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFIN 474
            +H K+  GM +T  C+V G P+P VYW K+ K++    E  RI         LH  + SL D  NY+  A N  G ++
Sbjct: 1020 KHYKVFEGMPVTFSCKVMGDPKPKVYWFKDGKQISKRSEHYRISRDPDGTCSLHTAAASLDDDGNYTIMAGNPAGRVS 1097
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Zebrafish
Match: palld (palladin, cytoskeletal associated protein [Source:ZFIN;Acc:ZDB-GENE-041014-252])

HSP 1 Score: 56.9954 bits (136), Expect = 3.035e-8
Identity = 28/78 (35.90%), Postives = 40/78 (51.28%), Query Frame = 1 
Query:  244 EHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEED-RIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFIN 474
            +H K+  GM +T  C+V G P+P VYW K+ K++    E  RI         LH  + SL D  NY+  A N  G ++
Sbjct: 1032 KHYKVFEGMPVTFSCKVMGDPKPKVYWFKDGKQISKRSEHYRISRDPDGTCSLHTAAASLDDDGNYTIMAGNPAGRVS 1109
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Xenopus
Match: PALLD (palladin, cytoskeletal associated protein [Source:NCBI gene;Acc:100144658])

HSP 1 Score: 60.4622 bits (145), Expect = 2.460e-9
Identity = 44/158 (27.85%), Postives = 67/158 (42.41%), Query Frame = 1 
Query:  247 HLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEED-RIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSNDQKDDWTTKLNI--------KPCSENSRCQFRDCK----------ILDNMVACRMRCEISKLSSSQM 663
            H KI  GM  T  C+VTG P+P +YW K+ K++    E  RI         LH  + SL D  NY+  A+N  G I+   ++ V   +         T++L++            EN   Q R  +          I+     CRM C++S L +  +
Sbjct:  305 HYKIFEGMPSTFTCKVTGNPKPKIYWFKDGKQISKRSEHYRIQREPDGTCSLHTSASSLDDDGNYTIMAANPQGRISCTGRLMVQAVNQRGRTARTPTSQLHVRRPRSRSRDSGDENEPIQERFFRPHFLQAPGDLIVQEGKLCRMDCKVSGLPTPDL 462
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Xenopus
Match: PALLD (palladin, cytoskeletal associated protein [Source:NCBI gene;Acc:100144658])

HSP 1 Score: 60.077 bits (144), Expect = 4.269e-9
Identity = 44/158 (27.85%), Postives = 67/158 (42.41%), Query Frame = 1 
Query:  247 HLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEED-RIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSNDQKDDWTTKLNI--------KPCSENSRCQFRDCK----------ILDNMVACRMRCEISKLSSSQM 663
            H KI  GM  T  C+VTG P+P +YW K+ K++    E  RI         LH  + SL D  NY+  A+N  G I+   ++ V   +         T++L++            EN   Q R  +          I+     CRM C++S L +  +
Sbjct:  632 HYKIFEGMPSTFTCKVTGNPKPKIYWFKDGKQISKRSEHYRIQREPDGTCSLHTSASSLDDDGNYTIMAANPQGRISCTGRLMVQAVNQRGRTARTPTSQLHVRRPRSRSRDSGDENEPIQERFFRPHFLQAPGDLIVQEGKLCRMDCKVSGLPTPDL 789
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Xenopus
Match: PALLD (palladin, cytoskeletal associated protein [Source:NCBI gene;Acc:100144658])

HSP 1 Score: 59.6918 bits (143), Expect = 5.193e-9
Identity = 44/158 (27.85%), Postives = 67/158 (42.41%), Query Frame = 1 
Query:  247 HLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEED-RIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSNDQKDDWTTKLNI--------KPCSENSRCQFRDCK----------ILDNMVACRMRCEISKLSSSQM 663
            H KI  GM  T  C+VTG P+P +YW K+ K++    E  RI         LH  + SL D  NY+  A+N  G I+   ++ V   +         T++L++            EN   Q R  +          I+     CRM C++S L +  +
Sbjct:  956 HYKIFEGMPSTFTCKVTGNPKPKIYWFKDGKQISKRSEHYRIQREPDGTCSLHTSASSLDDDGNYTIMAANPQGRISCTGRLMVQAVNQRGRTARTPTSQLHVRRPRSRSRDSGDENEPIQERFFRPHFLQAPGDLIVQEGKLCRMDCKVSGLPTPDL 1113
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Xenopus
Match: PALLD (palladin, cytoskeletal associated protein [Source:NCBI gene;Acc:100144658])

HSP 1 Score: 59.6918 bits (143), Expect = 5.500e-9
Identity = 44/158 (27.85%), Postives = 67/158 (42.41%), Query Frame = 1 
Query:  247 HLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEED-RIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSNDQKDDWTTKLNI--------KPCSENSRCQFRDCK----------ILDNMVACRMRCEISKLSSSQM 663
            H KI  GM  T  C+VTG P+P +YW K+ K++    E  RI         LH  + SL D  NY+  A+N  G I+   ++ V   +         T++L++            EN   Q R  +          I+     CRM C++S L +  +
Sbjct:  939 HYKIFEGMPSTFTCKVTGNPKPKIYWFKDGKQISKRSEHYRIQREPDGTCSLHTSASSLDDDGNYTIMAANPQGRISCTGRLMVQAVNQRGRTARTPTSQLHVRRPRSRSRDSGDENEPIQERFFRPHFLQAPGDLIVQEGKLCRMDCKVSGLPTPDL 1096
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Xenopus
Match: PALLD (palladin, cytoskeletal associated protein [Source:NCBI gene;Acc:100144658])

HSP 1 Score: 59.6918 bits (143), Expect = 5.636e-9
Identity = 44/158 (27.85%), Postives = 67/158 (42.41%), Query Frame = 1 
Query:  247 HLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEED-RIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSNDQKDDWTTKLNI--------KPCSENSRCQFRDCK----------ILDNMVACRMRCEISKLSSSQM 663
            H KI  GM  T  C+VTG P+P +YW K+ K++    E  RI         LH  + SL D  NY+  A+N  G I+   ++ V   +         T++L++            EN   Q R  +          I+     CRM C++S L +  +
Sbjct:  788 HYKIFEGMPSTFTCKVTGNPKPKIYWFKDGKQISKRSEHYRIQREPDGTCSLHTSASSLDDDGNYTIMAANPQGRISCTGRLMVQAVNQRGRTARTPTSQLHVRRPRSRSRDSGDENEPIQERFFRPHFLQAPGDLIVQEGKLCRMDCKVSGLPTPDL 945
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Mouse
Match: Ttn (titin [Source:MGI Symbol;Acc:MGI:98864])

HSP 1 Score: 57.3806 bits (137), Expect = 2.656e-8
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:  232 LKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNG 465
            + E E L+   G S++++C+V G PE TV W K   KL S  E R + T  N A L F  +S+ DS  Y+C A NS G
Sbjct: 6076 VTELEPLEASVGDSVSLQCQVAGTPEITVSWFKGDTKLRSTPEYRTYFT-NNVATLVFNKVSINDSGEYTCMAENSIG 6152
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Mouse
Match: Ttn (titin [Source:MGI Symbol;Acc:MGI:98864])

HSP 1 Score: 57.3806 bits (137), Expect = 2.656e-8
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:  232 LKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNG 465
            + E E L+   G S++++C+V G PE TV W K   KL S  E R + T  N A L F  +S+ DS  Y+C A NS G
Sbjct: 6076 VTELEPLEASVGDSVSLQCQVAGTPEITVSWFKGDTKLRSTPEYRTYFT-NNVATLVFNKVSINDSGEYTCMAENSIG 6152
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Mouse
Match: Ttn (titin [Source:MGI Symbol;Acc:MGI:98864])

HSP 1 Score: 57.3806 bits (137), Expect = 2.776e-8
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:  232 LKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNG 465
            + E E L+   G S++++C+V G PE TV W K   KL S  E R + T  N A L F  +S+ DS  Y+C A NS G
Sbjct: 7095 VTELEPLEASVGDSVSLQCQVAGTPEITVSWFKGDTKLRSTPEYRTYFT-NNVATLVFNKVSINDSGEYTCMAENSIG 7171
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Mouse
Match: Ttn (titin [Source:MGI Symbol;Acc:MGI:98864])

HSP 1 Score: 56.9954 bits (136), Expect = 3.024e-8
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:  232 LKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNG 465
            + E E L+   G S++++C+V G PE TV W K   KL S  E R + T  N A L F  +S+ DS  Y+C A NS G
Sbjct: 2747 VTELEPLEASVGDSVSLQCQVAGTPEITVSWFKGDTKLRSTPEYRTYFT-NNVATLVFNKVSINDSGEYTCMAENSIG 2823
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Mouse
Match: Palld (palladin, cytoskeletal associated protein [Source:MGI Symbol;Acc:MGI:1919583])

HSP 1 Score: 55.4546 bits (132), Expect = 4.902e-8
Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 1 
Query:  247 HLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAV--LHFPSISLADSSNYSCKASNSNGFIN 474
            H KI  GM +T  CRV G P+P +YW K+ K++ S + D     +  +    LH  + +L D  NY+  A+N  G ++
Sbjct:   78 HYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI-SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRVS 154
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. UniProt/SwissProt
Match: sp|Q95YM9|FGFR_HALRO (Fibroblast growth factor receptor OS=Halocynthia roretzi OX=7729 GN=FGFR PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.352e-7
Identity = 31/84 (36.90%), Postives = 43/84 (51.19%), Query Frame = 1 
Query:  262 SGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSS 513
            +G ++  RC V G P+P V W KN   +  N  DR+   K    VL   S+ L+D  NY C A N  G IN  +Q+ V +  +S
Sbjct:   90 AGNTVRFRCAVDGNPKPQVLWYKNDLIVQKN--DRVGGYKYRNQVLILESVVLSDKGNYMCVARNEYGSINHTYQLDVQERSAS 171
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. UniProt/SwissProt
Match: sp|A2ASS6|TITIN_MOUSE (Titin OS=Mus musculus OX=10090 GN=Ttn PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.733e-7
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:  232 LKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNG 465
            + E E L+   G S++++C+V G PE TV W K   KL S  E R + T  N A L F  +S+ DS  Y+C A NS G
Sbjct: 6970 VTELEPLEASVGDSVSLQCQVAGTPEITVSWFKGDTKLRSTPEYRTYFT-NNVATLVFNKVSINDSGEYTCMAENSIG 7046
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. UniProt/SwissProt
Match: sp|P0C5E3|PALLD_RAT (Palladin (Fragment) OS=Rattus norvegicus OX=10116 GN=Palld PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.953e-7
Identity = 27/78 (34.62%), Postives = 43/78 (55.13%), Query Frame = 1 
Query:  247 HLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAV--LHFPSISLADSSNYSCKASNSNGFIN 474
            H KI  GM +T  CRV G P+P +YW K+ K++ S + D     +  +    LH  + +L D  NY+  A+N+ G ++
Sbjct:  286 HYKIFEGMPVTFTCRVAGSPKPKIYWFKDGKQI-SPKSDHYTIQRDVDGTCSLHTTASTLDDDGNYTIMAANTQGRVS 362
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. UniProt/SwissProt
Match: sp|Q8WZ42|TITIN_HUMAN (Titin OS=Homo sapiens OX=9606 GN=TTN PE=1 SV=4)

HSP 1 Score: 56.6102 bits (135), Expect = 3.163e-7
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:  232 LKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNG 465
            + E E L+   G S++++C+V G PE TV W K   KL    E R + T  N A L F  +++ DS  Y+CKA NS G
Sbjct: 7009 VTELEPLEAAVGDSVSLQCQVAGTPEITVSWYKGDTKLRPTPEYRTYFT-NNVATLVFNKVNINDSGEYTCKAENSIG 7085
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. UniProt/SwissProt
Match: sp|G4SLH0|TTN1_CAEEL (Titin homolog OS=Caenorhabditis elegans OX=6239 GN=ttn-1 PE=1 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 3.494e-7
Identity = 32/121 (26.45%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:  265 GMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSNDQKDDWT-TKLNIKPCSENSRCQFRDCKILDNMVACR 624
            G+S+ +R +V G P+P + W K  +KL+ NEE  +   + ++ +L   +++ AD+  Y   A N +G  N   ++ V+Q+  +   K  +  + ++++ C +N R + R         ACR
Sbjct: 18343 GVSVELRAKVIGHPDPVISWTKAGQKLN-NEEKYMMRNEGDKFILRIANVTRADAGKYELTAINPSGQANAELELTVVQSTKTVGAKPKFNESPISVQTCEKN-RAELRASFSGTPAPACR 18461
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. TrEMBL
Match: A0A0X3NWJ2 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=TR144118 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.657e-12
Identity = 46/156 (29.49%), Postives = 74/156 (47.44%), Query Frame = 1 
Query:  208 GKPINIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKK----LDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSNDQKDDWTTK-LNIKPCSENSRCQFRDCKILDNMVACR-------MRCEI 639
              P+ ++ L   E L ++ G  L + CRV G+P P + W  NS +     D++    +  T +  + LH  +I L D+ NYSC A N NGFI K   I V     +  + +  T + +++ PC +   C    C ++D   +CR        RCE+
Sbjct:  229 ASPLQMRPLYHAEKLSVLVGNELMLTCRVKGRPTPLISWYVNSTRQLGLWDASTGRGVIHTHRRSSKLHISNIKLTDTGNYSCLAENVNGFIRKTVFIIVSPKPVTTSKPEMSTPEPISVHPCYQY--CLHGVCSLIDGRPSCRCYHGYLGRRCEL 382
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. TrEMBL
Match: A0A5K3FY06 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.282e-11
Identity = 44/155 (28.39%), Postives = 69/155 (44.52%), Query Frame = 1 
Query:  214 PINIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKK----LDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSNDQKDDWTT--KLNIKPCSENSRCQFRDCKILDNMVACR-------MRCEI 639
            P+ +++L  +E L +  G  + + C VTG+P P + W  NS       D+     +    +  + LH  ++   DS NYSC A N NG+I K  QI+V         +  W T   + + PC     C    C ++D   +CR        RCE+
Sbjct:  194 PLQMRALHHREDLHVAQGEEVVLSCVVTGRPAPLITWYVNSTHQLGLWDAVAGRGVIHKSRRNSRLHLSNMQPTDSGNYSCLAENVNGYIKKTVQIRV--KPRPQTTQPPWITAPPVTVHPCYRY--CLHGYCNLVDGRPSCRCKRGYLGRRCEL 344
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. TrEMBL
Match: A0A493TWE9 (Hemicentin 1 OS=Anas platyrhynchos platyrhynchos OX=8840 GN=HMCN1 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.198e-8
Identity = 39/122 (31.97%), Postives = 60/122 (49.18%), Query Frame = 1 
Query:  190 HLSFEIGKPINIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSN--DQKDDWTTKLN 549
            H S +I  P ++ +    E + +I G S +++C   G P PTV W KN   L         T+     VLHF    + D+  Y+C ASN  G I+K F +KV++    N  DQ ++ +  +N
Sbjct: 3428 HYSLQIFVPPSLDNAGGTEDMTVIKGSSTSMKCFTDGTPAPTVSWFKNGNPLSLGAH---LTSSDQGMVLHFVKAEIGDTGKYTCVASNEAGDISKHFSLKVLEPPHINGSDQPEELSVIVN 3546
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. TrEMBL
Match: U3IV84 (Hemicentin 1 OS=Anas platyrhynchos platyrhynchos OX=8840 GN=HMCN1 PE=4 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.198e-8
Identity = 39/122 (31.97%), Postives = 60/122 (49.18%), Query Frame = 1 
Query:  190 HLSFEIGKPINIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSN--DQKDDWTTKLN 549
            H S +I  P ++ +    E + +I G S +++C   G P PTV W KN   L         T+     VLHF    + D+  Y+C ASN  G I+K F +KV++    N  DQ ++ +  +N
Sbjct: 3427 HYSLQIFVPPSLDNAGGTEDMTVIKGSSTSMKCFTDGTPAPTVSWFKNGNPLSLGAH---LTSSDQGMVLHFVKAEIGDTGKYTCVASNEAGDISKHFSLKVLEPPHINGSDQPEELSVIVN 3545
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. TrEMBL
Match: A0A493T655 (Hemicentin 1 OS=Anas platyrhynchos platyrhynchos OX=8840 GN=HMCN1 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.219e-8
Identity = 39/122 (31.97%), Postives = 60/122 (49.18%), Query Frame = 1 
Query:  190 HLSFEIGKPINIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSN--DQKDDWTTKLN 549
            H S +I  P ++ +    E + +I G S +++C   G P PTV W KN   L         T+     VLHF    + D+  Y+C ASN  G I+K F +KV++    N  DQ ++ +  +N
Sbjct: 3429 HYSLQIFVPPSLDNAGGTEDMTVIKGSSTSMKCFTDGTPAPTVSWFKNGNPLSLGAH---LTSSDQGMVLHFVKAEIGDTGKYTCVASNEAGDISKHFSLKVLEPPHINGSDQPEELSVIVN 3547
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Cavefish
Match: palld (palladin, cytoskeletal associated protein [Source:ZFIN;Acc:ZDB-GENE-041014-252])

HSP 1 Score: 60.4622 bits (145), Expect = 1.479e-9
Identity = 29/78 (37.18%), Postives = 41/78 (52.56%), Query Frame = 1 
Query:  244 EHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEED-RIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFIN 474
            +H KI  GM +T  C+V G P+P VYW K+ K++    E  RI        +LH  + SL D  NY+  A N  G ++
Sbjct:  497 KHYKIFEGMPVTFSCKVIGDPKPKVYWFKDGKQISKRSEHYRISRDPDGTCLLHTAAASLDDDGNYTIMAGNPAGRVS 574
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Cavefish
Match: ENSAMXT00000034734.1 (pep primary_assembly:Astyanax_mexicanus-2.0:6:27621426:27626354:-1 gene:ENSAMXG00000040002.1 transcript:ENSAMXT00000034734.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 52.7582 bits (125), Expect = 1.890e-7
Identity = 26/96 (27.08%), Postives = 43/96 (44.79%), Query Frame = 1 
Query:  211 KPINIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVI 498
             P  +   +  E L ++ G  +T+ C   G P PT+ W+K+ + L  +           E     P++  +D+  YSC ASN  G   K F + V+
Sbjct:   88 APPTVDRTEPTEQLSVVLGSVVTLTCEAHGVPPPTLTWLKDGRPLHFSHNQ---LPDGQETRFQLPAVGRSDAGLYSCVASNPAGSSTKTFNLTVL 180
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Cavefish
Match: fgfrl1a (fibroblast growth factor receptor like 1a [Source:ZFIN;Acc:ZDB-GENE-040128-2])

HSP 1 Score: 51.9878 bits (123), Expect = 7.003e-7
Identity = 25/83 (30.12%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:  265 GMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSS 513
            G S+ ++C  +G P P + W+K+S+ L   E   +   +K +  L   +++   S  Y+C  SN  G IN  ++++VIQ  +S
Sbjct:  169 GSSVRLKCTASGNPRPDIVWLKDSRPLTPEE---VGEGRKKKWTLSLKNLTPEHSGKYTCHVSNRAGEINATYKVEVIQRTNS 248
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Cavefish
Match: fgfr3 (fibroblast growth factor receptor 3 [Source:NCBI gene;Acc:58129])

HSP 1 Score: 51.2174 bits (121), Expect = 1.475e-6
Identity = 24/88 (27.27%), Postives = 42/88 (47.73%), Query Frame = 1 
Query:  238 EKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQ 501
            EK+ L + +  ++  RC   G P PT++W+KN K+    +       +  +  L   S   +D  NY+C   N  G I   +Q+ V++
Sbjct:  167 EKKLLAVPAANTVKFRCAAAGNPTPTIHWLKNGKEFKGEQRMGGIKLRHLQWSLVMESAVPSDRGNYTCVVQNKYGTITHTYQLDVLE 254
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Cavefish
Match: fgfr1a (fibroblast growth factor receptor 1a [Source:NCBI gene;Acc:30705])

HSP 1 Score: 51.2174 bits (121), Expect = 1.481e-6
Identity = 24/88 (27.27%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:  238 EKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQ 501
            EK+   + +  ++  RC   G P PT+ W+KN K+   ++    F  + +   +   S+  +D  NY+C   N  G IN  +Q+ V++
Sbjct:   78 EKKLHAVPASRTVKFRCPAVGSPNPTLKWLKNGKEFKRDQRIGGFKVRDHMWSIIMDSVVPSDKGNYTCLVENKYGSINHTYQLDVVE 165
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005850.1 (pep scaffold:Pmarinus_7.0:GL476948:68064:92656:1 gene:ENSPMAG00000005287.1 transcript:ENSPMAT00000005850.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 59.3066 bits (142), Expect = 7.800e-10
Identity = 45/188 (23.94%), Postives = 82/188 (43.62%), Query Frame = 1 
Query:  181 KITHLSFEIGK---PINIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEA--VLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSNDQKDDWTTKLNIKPCSENSRCQFRDCKILDNMVA----------------------CRMRCEISKLSSSQM 663
            ++ H     G+   PI  + LK   H K   G  +T  C+V+G P P +YW K+  ++ S + +R    + +E    LH P  ++ D  NY+  A N  G I+   ++ ++QN    +Q+       + +P +   R Q R+ +   +MV                       CR+ C++S L + ++
Sbjct:  321 EVEHDDIPTGRCIAPIFERKLK---HFKTFEGSPITFSCKVSGTPTPKIYWFKDGNQI-SKKSERFQMQRDSEGNCSLHIPLTTMDDDGNYTVMAGNPQGRISCSGRL-MVQN---VNQRGRVARSQSGQPAARRPRSQSRESRDDSDMVQEKNFRPHFLQAPGDTMAHEGKLCRLDCKVSGLPTPEL 500
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002502.1 (pep scaffold:Pmarinus_7.0:GL476400:249000:366561:-1 gene:ENSPMAG00000002253.1 transcript:ENSPMAT00000002502.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 53.9138 bits (128), Expect = 5.046e-8
Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:  232 LKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNG 465
            +K  E  +I+ G ++ + C+V G P+  V W K S+KL S ++ ++   K N A L   S++ AD+ +YSCKA N  G
Sbjct: 5501 IKGLEPTEIVVGSTVHLECQVAGTPQIRVSWYKGSQKLKSGDKCKM-AFKNNLATLELRSLTKADTGDYSCKAENDFG 5577

HSP 2 Score: 49.2914 bits (116), Expect = 1.294e-6
Identity = 32/84 (38.10%), Postives = 43/84 (51.19%), Query Frame = 1 
Query:  214 PINIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNG 465
            P  +KSL   E ++   G S+   C+V G PE  V W K S+KL   +   +F  + N AVL   +   AD   YSC+A NS G
Sbjct: 6624 PYFVKSL---EPMEGTFGTSVYFECQVAGAPEIRVTWYKGSQKLSGAKYKTMF--QHNTAVLEVKNFEKADVGTYSCEAENSLG 6702

HSP 3 Score: 48.1358 bits (113), Expect = 3.380e-6
Identity = 20/71 (28.17%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:  253 KIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNG 465
            ++  GM++T  C+V+G P P + W KN +++ ++E + I ++ +    L  P +       Y+  ASN+ G
Sbjct:  709 RVFEGMTVTYHCKVSGSPLPKITWYKNGQRVRASERNHIESSGEGLHSLRIPLVQAEHEGVYTVLASNARG 779
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007655.1 (pep scaffold:Pmarinus_7.0:GL494936:2020:2537:-1 gene:ENSPMAG00000006916.1 transcript:ENSPMAT00000007655.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 48.521 bits (114), Expect = 8.344e-8
Identity = 28/84 (33.33%), Postives = 43/84 (51.19%), Query Frame = 1 
Query:  259 ISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLA-DSSNYSCKASNSNGFINKWFQIKVIQND 507
            +SG   +  CR TG P+P + W K  KKL S   + I       +VL    +  A D + Y C ASN  G I+K  +++V++ +
Sbjct:   14 VSGGVASFVCRATGDPKPNITWAKKGKKLSSQRFEIIDYDNGASSVLRIQPLRPARDEAEYECVASNVLGQISKSVKLRVLRGE 97
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008285.1 (pep scaffold:Pmarinus_7.0:GL481193:15019:35761:-1 gene:ENSPMAG00000007495.1 transcript:ENSPMAT00000008285.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 52.373 bits (124), Expect = 1.319e-7
Identity = 26/72 (36.11%), Postives = 39/72 (54.17%), Query Frame = 1 
Query:  265 GMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAV--LHFPSISLADSSNYSCKASNSNGFIN 474
            G S T  C V+G+P PTV W ++ K +D+  +   F T+  + +  L   S+  +D   YSCK  NS G +N
Sbjct:    3 GYSATFTCMVSGRPAPTVTWQRDGKNVDNFVDSYRFLTEGRDGMHTLKINSVRPSDMGTYSCKVKNSAGEVN 74
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010530.1 (pep scaffold:Pmarinus_7.0:GL477073:104451:224074:1 gene:ENSPMAG00000009530.1 transcript:ENSPMAT00000010530.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 51.6026 bits (122), Expect = 2.309e-7
Identity = 31/110 (28.18%), Postives = 50/110 (45.45%), Query Frame = 1 
Query:  193 LSFEIGKPINIKSLKEKEHLK-------IISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQ 501
            L  +I   +   S KEKE+ +       I+ G  +T+ CR  G P P V W K+ K L S    ++  +++ + +L        D+  Y C A+N  G      +IK+ Q
Sbjct: 1612 LGHKISLALKKGSSKEKENKEQPSEDELIVDGQPMTLYCRPVGNPSPDVKWFKDKKLLGSESRAKVTVSREGQHILSVVKAGKKDTGVYECSATNHLGSAATSCKIKLAQ 1721
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Nematostella
Match: EDO49556 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RGM0])

HSP 1 Score: 55.8398 bits (133), Expect = 1.389e-8
Identity = 29/88 (32.95%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:  235 KEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEA-VLHFPSISLADSSNYSCKASNSNGFINKWFQIKV 495
            +E   L +I    +T+   VTGKP+P V+W K++K L   E+DRI    K ++ ++   +++  DS  Y C+A N  G   + F + V
Sbjct:  340 EEATQLTLIEDDDMTLELHVTGKPKPEVHWTKDNKPL--TEDDRIIIDHKGDSCIVDIMAVTPNDSGTYKCEAKNKAGVNTRTFIVNV 425
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Nematostella
Match: EDO43171 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZN6])

HSP 1 Score: 52.373 bits (124), Expect = 2.116e-7
Identity = 28/100 (28.00%), Postives = 51/100 (51.00%), Query Frame = 1 
Query:  220 NIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSND 519
            NIK+L+    +++  G  L +RC   G P+P + W  N KKL S   + +        VL+  S+  +DS  Y+C   N +G I + + +  +++ S+ +
Sbjct:  166 NIKALR----IRLEEGSQLKLRCHANGSPQPKIQWHHNGKKLRSRRRNHVIL---RGWVLNIRSLRQSDSGRYTCIVKNKHGTIRRTYIVSPLKSRSTGE 258
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Nematostella
Match: EDO26294 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7TCD9])

HSP 1 Score: 51.6026 bits (122), Expect = 2.213e-7
Identity = 33/119 (27.73%), Postives = 59/119 (49.58%), Query Frame = 1 
Query:  217 INIKSLKEKEHLKIISGMSLT--------VRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKW--FQIKVIQNDS-SNDQKDDWTT 540
            + +++LK  E + ++ G +LT        + C+ TG P PTV W+K  ++L S   + +   +     L     +L DS  Y C A++  G+++     +IKV++ D  S D   + TT
Sbjct:   79 VPVEALKNLEPVSVLIGANLTAFEKAPVTLTCKATGLPLPTVRWIKGGRQLVSKGHEIVAGGR-----LFLGKATLGDSGEYECTATSPLGYVSAKSNLEIKVLRRDKISTDLGKNVTT 192
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Nematostella
Match: EDO49191 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RHA4])

HSP 1 Score: 51.2174 bits (121), Expect = 4.070e-7
Identity = 30/90 (33.33%), Postives = 44/90 (48.89%), Query Frame = 1 
Query:  235 KEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSK---KLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKV 495
            +EK  + +  G SL + C   GKP PTV W+KN K   K D  E     + +  + VL       +D   Y+C  SN+ G+IN  + + V
Sbjct:    2 REKTLIAMPVGNSLKLDCSADGKPRPTVVWLKNGKPFLKRDGVE----LSLRPYQYVLSMRDAVPSDDGRYTCNVSNALGWINHTYTVDV 87
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Nematostella
Match: EDO45383 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RT26])

HSP 1 Score: 50.8322 bits (120), Expect = 5.420e-7
Identity = 24/77 (31.17%), Postives = 41/77 (53.25%), Query Frame = 1 
Query:  265 GMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKV 495
            G  +   C+ TG P P V W+K+   ++++ + R ++   N+ +L   ++S  DS  YSC ASN  G I+    + V
Sbjct:   11 GQVVKFECQTTGNPSPNVTWLKSGSAVNTSVDPRFYS---NDTILMITNVSRIDSGTYSCNASNELGIISAEAALDV 84
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Medaka
Match: cntn3a.1 (contactin-4 [Source:NCBI gene;Acc:101159916])

HSP 1 Score: 56.225 bits (134), Expect = 4.209e-8
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 1 
Query:  286 CRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNG--FINKWFQIKVIQNDSSND 519
            C+ +GKP+P+  W+KN + LD  E+DRI   + N+ VL   S++L D   Y C A N  G  F N   ++  I  D S +
Sbjct:  341 CKASGKPKPSYRWLKNGESLDPMEQDRI---EVNDGVLTIRSLNLVDVGMYQCVAENKYGRIFCNAQLRVLAIAPDFSQN 417
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Medaka
Match: ENSORLT00000000391.2 (fibroblast growth factor receptor 1-A [Source:NCBI gene;Acc:101155126])

HSP 1 Score: 55.8398 bits (133), Expect = 4.324e-8
Identity = 24/88 (27.27%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:  238 EKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQ 501
            EK+   + + M++  RC  TG P PT++W+KN ++   ++    F  K +   L   S+  +D  NY+C   N +G +   +Q+ +++
Sbjct:   80 EKQLHAVPASMTVRFRCPATGNPVPTLHWLKNGEEFSRDQRIGGFKIKDHTWSLIMESVVPSDEGNYTCVVENEHGSLRHTYQLDIVE 167
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Medaka
Match: ENSORLT00000040527.1 (fibroblast growth factor receptor 1-A [Source:NCBI gene;Acc:101155126])

HSP 1 Score: 55.8398 bits (133), Expect = 4.927e-8
Identity = 24/88 (27.27%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:  238 EKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQ 501
            EK+   + + M++  RC  TG P PT++W+KN ++   ++    F  K +   L   S+  +D  NY+C   N +G +   +Q+ +++
Sbjct:   80 EKQLHAVPASMTVRFRCPATGNPVPTLHWLKNGEEFSRDQRIGGFKIKDHTWSLIMESVVPSDEGNYTCVVENEHGSLRHTYQLDIVE 167
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Medaka
Match: palld (palladin, cytoskeletal associated protein [Source:NCBI gene;Acc:101160472])

HSP 1 Score: 54.299 bits (129), Expect = 1.461e-7
Identity = 27/78 (34.62%), Postives = 41/78 (52.56%), Query Frame = 1 
Query:  244 EHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEED-RIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFIN 474
            +H K+  GM +T  CRV G+P+  +YW K+ K++    E  RI         LH  + SL D  NY+  A+N  G ++
Sbjct: 1037 KHYKVFEGMPVTFSCRVKGEPKAKIYWFKDGKQISKRSEHYRINRHPDGTCSLHTAAASLDDDGNYTILAANPQGRVS 1114
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Medaka
Match: palld (palladin, cytoskeletal associated protein [Source:NCBI gene;Acc:101160472])

HSP 1 Score: 54.299 bits (129), Expect = 1.488e-7
Identity = 27/78 (34.62%), Postives = 41/78 (52.56%), Query Frame = 1 
Query:  244 EHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEED-RIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFIN 474
            +H K+  GM +T  CRV G+P+  +YW K+ K++    E  RI         LH  + SL D  NY+  A+N  G ++
Sbjct: 1003 KHYKVFEGMPVTFSCRVKGEPKAKIYWFKDGKQISKRSEHYRINRHPDGTCSLHTAAASLDDDGNYTILAANPQGRVS 1080
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Planmine SMEST
Match: SMESG000061810.1 (SMESG000061810.1)

HSP 1 Score: 665.611 bits (1716), Expect = 0.000e+0
Identity = 343/345 (99.42%), Postives = 344/345 (99.71%), Query Frame = 1 
Query:   46 MFKKFLLISVFCLSLKSQVHEFRNRHNFAQVFPAKPNNEVSLVNIKITHLSFEIGKPINIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSNDQKDDWTTKLNIKPCSENSRCQFRDCKILDNMVACRMRCEISKLSSSQMPRKSCPTIENPKKIYCLQKYQXXXXXXXXXXXXXXXXCLFWYSFRAKINLKINTHQDISRKGFKLPTFQLDSEEVFKDLPTDVLFNCSNKVKAISGQEKSQFTEIQKEDLTCFRIYERNGNPDEPLVVNGYCYLSNNLK 1080
            MFKKFLLISVFCLSLKSQVHEFRNRHNFAQVFPAKPNNEVSLVNIKITHLSFEIGKPINIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVI+NDSSNDQKDDWTTKLNIKPCSENSRCQFRDCKILDNMVACRMRCEISKLSSSQMPRKSCPTIENPKKIYCLQKYQIIFALILIALILFIILCLFWYSFRAKINLKINTHQDISRKGFKLPTFQLDSEEVFKDLPTDVLFNCSNKVKAISGQEKSQFTE QKEDLTCFRIYERNGNPDEPLVVNGYCYLSNNLK
Sbjct:    1 MFKKFLLISVFCLSLKSQVHEFRNRHNFAQVFPAKPNNEVSLVNIKITHLSFEIGKPINIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIKNDSSNDQKDDWTTKLNIKPCSENSRCQFRDCKILDNMVACRMRCEISKLSSSQMPRKSCPTIENPKKIYCLQKYQIIFALILIALILFIILCLFWYSFRAKINLKINTHQDISRKGFKLPTFQLDSEEVFKDLPTDVLFNCSNKVKAISGQEKSQFTETQKEDLTCFRIYERNGNPDEPLVVNGYCYLSNNLK 345
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Planmine SMEST
Match: SMESG000026010.1 (SMESG000026010.1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.904e-12
Identity = 46/165 (27.88%), Postives = 77/165 (46.67%), Query Frame = 1 
Query:  166 SLVNIKITHLSFEIGKPINIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLD-SNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKVIQNDSSNDQKDDWTTKLNIKPCSENSRCQFRDCKILDNMVACR-------MRCE 636
            SL++++IT  S  I  P+ IK       + +  G  L ++C+  G P P + W  N  K+D S  +D     K N + L    +      N+SC A N+NG ++KW  + V++N + +      T+   +  CS+ + C +  C   +N   CR       +RCE
Sbjct:   17 SLIDLRITEFSPSIYAPVLIKRPTNNNEITLQEGNLLKIKCQADGNPIPKIDWYLNGTKIDKSTYKDIQIEIKGNLSTLIIGKVGTRHEGNFSCIAHNNNGLLSKWAYVSVMKNYTMDTTIRSSTS---VYFCSQET-CVYGSCIRENNTSFCRCLPPYSGIRCE 177
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Planmine SMEST
Match: SMESG000016092.1 (SMESG000016092.1)

HSP 1 Score: 61.2326 bits (147), Expect = 4.223e-10
Identity = 34/116 (29.31%), Postives = 59/116 (50.86%), Query Frame = 1 
Query:  160 EVSLVNIKITHLSFEIGKPINIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLD----SNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKV 495
            E+    I+I   +  +  PI I  L     + +    +L + C   G P P V W KN ++++    ++E+ +I +  K  ++L F SI   DS +YSC+A N +G + K  ++KV
Sbjct:   18 ELGEAEIRIVKFAISLPNPITILPLHPTGLVSVPENSALKMFCLADGHPTPEVTWNKNFQQINLEKINSEQMKISSKTKGSSILSFKSIRYEDSGSYSCQAMNVHGQVQKAIRLKV 133
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Planmine SMEST
Match: SMESG000016092.1 (SMESG000016092.1)

HSP 1 Score: 61.2326 bits (147), Expect = 4.868e-10
Identity = 34/116 (29.31%), Postives = 59/116 (50.86%), Query Frame = 1 
Query:  160 EVSLVNIKITHLSFEIGKPINIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLD----SNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKV 495
            E+    I+I   +  +  PI I  L     + +    +L + C   G P P V W KN ++++    ++E+ +I +  K  ++L F SI   DS +YSC+A N +G + K  ++KV
Sbjct:   28 ELGEAEIRIVKFAISLPNPITILPLHPTGLVSVPENSALKMFCLADGHPTPEVTWNKNFQQINLEKINSEQMKISSKTKGSSILSFKSIRYEDSGSYSCQAMNVHGQVQKAIRLKV 143
[Close]
BLAST of Palladin, cytoskeletal associated protein vs. Planmine SMEST
Match: SMESG000013824.1 (SMESG000013824.1)

HSP 1 Score: 58.151 bits (139), Expect = 4.719e-9
Identity = 34/120 (28.33%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:  160 EVSLVNIKITHLSFEIGKPINIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKLDS--------NEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKV 495
            E+  V +KI+  +  +  P  +      + ++I SG   ++ C V G+P PT+ W KN+ ++          N   RI  ++ +E  L + S++ +DS NY+C A N  G + K   I+V
Sbjct:   10 ELGEVEVKISKFALHLSTPSALIIQNSLKSVRIKSGEEFSLICEVHGRPIPTILWYKNNLQIKRQWFHYSFVNYGIRIINSRTSE--LKYQSVTTSDSGNYTCHAQNVYGHVQKSINIEV 127
The following BLAST results are available for this feature:
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
PALLD7.869e-935.90palladin, cytoskeletal associated protein [Source:... [more]
TTN6.528e-841.03titin [Source:HGNC Symbol;Acc:HGNC:12403][more]
TTN6.587e-841.03titin [Source:HGNC Symbol;Acc:HGNC:12403][more]
TTN6.587e-841.03titin [Source:HGNC Symbol;Acc:HGNC:12403][more]
TTN7.064e-841.03titin [Source:HGNC Symbol;Acc:HGNC:12403][more]
back to top
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ttn-12.534e-826.45Titin homolog [Source:UniProtKB/Swiss-Prot;Acc:G4... [more]
ttn-12.534e-826.45Titin homolog [Source:UniProtKB/Swiss-Prot;Acc:G4... [more]
ttn-12.556e-826.45Titin homolog [Source:UniProtKB/Swiss-Prot;Acc:G4... [more]
ttn-12.556e-826.45Titin homolog [Source:UniProtKB/Swiss-Prot;Acc:G4... [more]
ttn-12.600e-826.45Titin homolog [Source:UniProtKB/Swiss-Prot;Acc:G4... [more]
back to top
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
bt1.938e-832.47gene:FBgn0005666 transcript:FBtr0301340[more]
bt2.006e-832.47gene:FBgn0005666 transcript:FBtr0334483[more]
bt2.112e-832.47gene:FBgn0005666 transcript:FBtr0344988[more]
bt2.113e-832.47gene:FBgn0005666 transcript:FBtr0089793[more]
bt2.167e-832.47gene:FBgn0005666 transcript:FBtr0334482[more]
back to top
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
palld1.836e-938.03palladin, cytoskeletal associated protein [Source:... [more]
palld4.050e-938.03palladin, cytoskeletal associated protein [Source:... [more]
ccdc1411.827e-835.42coiled-coil domain containing 141 [Source:ZFIN;Acc... [more]
palld3.005e-835.90palladin, cytoskeletal associated protein [Source:... [more]
palld3.035e-835.90palladin, cytoskeletal associated protein [Source:... [more]
back to top
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
PALLD2.460e-927.85palladin, cytoskeletal associated protein [Source:... [more]
PALLD4.269e-927.85palladin, cytoskeletal associated protein [Source:... [more]
PALLD5.193e-927.85palladin, cytoskeletal associated protein [Source:... [more]
PALLD5.500e-927.85palladin, cytoskeletal associated protein [Source:... [more]
PALLD5.636e-927.85palladin, cytoskeletal associated protein [Source:... [more]
back to top
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Ttn2.656e-842.31titin [Source:MGI Symbol;Acc:MGI:98864][more]
Ttn2.656e-842.31titin [Source:MGI Symbol;Acc:MGI:98864][more]
Ttn2.776e-842.31titin [Source:MGI Symbol;Acc:MGI:98864][more]
Ttn3.024e-842.31titin [Source:MGI Symbol;Acc:MGI:98864][more]
Palld4.902e-834.62palladin, cytoskeletal associated protein [Source:... [more]
back to top
BLAST of Palladin, cytoskeletal associated protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q95YM9|FGFR_HALRO1.352e-736.90Fibroblast growth factor receptor OS=Halocynthia r... [more]
sp|A2ASS6|TITIN_MOUSE1.733e-742.31Titin OS=Mus musculus OX=10090 GN=Ttn PE=1 SV=1[more]
sp|P0C5E3|PALLD_RAT2.953e-734.62Palladin (Fragment) OS=Rattus norvegicus OX=10116 ... [more]
sp|Q8WZ42|TITIN_HUMAN3.163e-741.03Titin OS=Homo sapiens OX=9606 GN=TTN PE=1 SV=4[more]
sp|G4SLH0|TTN1_CAEEL3.494e-726.45Titin homolog OS=Caenorhabditis elegans OX=6239 GN... [more]
back to top
BLAST of Palladin, cytoskeletal associated protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0X3NWJ22.657e-1229.49Uncharacterized protein OS=Schistocephalus solidus... [more]
A0A5K3FY065.282e-1128.39Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A493TWE91.198e-831.97Hemicentin 1 OS=Anas platyrhynchos platyrhynchos O... [more]
U3IV841.198e-831.97Hemicentin 1 OS=Anas platyrhynchos platyrhynchos O... [more]
A0A493T6551.219e-831.97Hemicentin 1 OS=Anas platyrhynchos platyrhynchos O... [more]
back to top
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
palld1.479e-937.18palladin, cytoskeletal associated protein [Source:... [more]
ENSAMXT00000034734.11.890e-727.08pep primary_assembly:Astyanax_mexicanus-2.0:6:2762... [more]
fgfrl1a7.003e-730.12fibroblast growth factor receptor like 1a [Source:... [more]
fgfr31.475e-627.27fibroblast growth factor receptor 3 [Source:NCBI g... [more]
fgfr1a1.481e-627.27fibroblast growth factor receptor 1a [Source:NCBI ... [more]
back to top
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSPMAT00000005850.17.800e-1023.94pep scaffold:Pmarinus_7.0:GL476948:68064:92656:1 g... [more]
ENSPMAT00000002502.15.046e-837.18pep scaffold:Pmarinus_7.0:GL476400:249000:366561:-... [more]
ENSPMAT00000007655.18.344e-833.33pep scaffold:Pmarinus_7.0:GL494936:2020:2537:-1 ge... [more]
ENSPMAT00000008285.11.319e-736.11pep scaffold:Pmarinus_7.0:GL481193:15019:35761:-1 ... [more]
ENSPMAT00000010530.12.309e-728.18pep scaffold:Pmarinus_7.0:GL477073:104451:224074:1... [more]
back to top
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO495561.389e-832.95Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO431712.116e-728.00Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO262942.213e-727.73Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO491914.070e-733.33Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO453835.420e-731.17Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of Palladin, cytoskeletal associated protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
cntn3a.14.209e-837.50contactin-4 [Source:NCBI gene;Acc:101159916][more]
ENSORLT00000000391.24.324e-827.27fibroblast growth factor receptor 1-A [Source:NCBI... [more]
ENSORLT00000040527.14.927e-827.27fibroblast growth factor receptor 1-A [Source:NCBI... [more]
palld1.461e-734.62palladin, cytoskeletal associated protein [Source:... [more]
palld1.488e-734.62palladin, cytoskeletal associated protein [Source:... [more]
back to top
BLAST of Palladin, cytoskeletal associated protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000061810.10.000e+099.42SMESG000061810.1[more]
SMESG000026010.17.904e-1227.88SMESG000026010.1[more]
SMESG000016092.14.223e-1029.31SMESG000016092.1[more]
SMESG000016092.14.868e-1029.31SMESG000016092.1[more]
SMESG000013824.14.719e-928.33SMESG000013824.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30036018 ID=SMED30036018|Name=Palladin, cytoskeletal associated protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1165bp
GTAAAATTAAAATTTTACATTAATTTTAATTAATGTCAAAATGAAATGTT
TAAAAAATTTCTACTGATATCAGTTTTTTGTTTGAGTTTGAAATCCCAAG
TCCACGAGTTCAGAAATCGGCACAATTTTGCACAGGTTTTCCCGGCAAAA
CCAAATAATGAAGTCTCACTTGTCAATATCAAAATTACTCATTTGTCATT
TGAAATTGGTAAACCGATCAATATAAAGTCGTTGAAGGAGAAGGAACATT
TGAAAATAATCTCCGGAATGAGTTTAACGGTTAGATGCCGAGTAACGGGA
AAACCGGAACCTACAGTCTATTGGATGAAGAACTCAAAAAAGCTCGACTC
CAACGAAGAAGATAGAATATTTACAACTAAAAAAAATGAAGCAGTTTTAC
ATTTCCCAAGTATTTCTCTGGCCGATTCTTCGAACTACTCTTGCAAAGCT
AGCAACTCTAACGGGTTTATAAATAAATGGTTCCAAATTAAAGTTATTCA
AAATGATTCTTCCAATGACCAAAAAGATGATTGGACTACAAAATTAAATA
TCAAACCATGTTCCGAGAATAGTCGATGTCAATTCCGTGACTGCAAAATT
CTTGATAATATGGTCGCGTGTCGGATGCGCTGCGAGATTTCAAAATTAAG
TTCATCCCAGATGCCGAGAAAATCATGTCCAACAATAGAAAATCCAAAAA
AAATTTATTGCCTCCAGAAATATCAAATTATATTTGCATTAATATTGATT
GCTCTGATATTATTCATAATATTGTGCCTGTTTTGGTACAGCTTCAGAGC
AAAAATAAATTTAAAAATAAATACTCATCAAGATATATCCAGAAAAGGAT
TTAAACTCCCTACATTTCAACTCGACAGTGAAGAAGTTTTCAAAGATCTT
CCAACTGATGTACTGTTTAATTGTTCGAATAAAGTGAAAGCAATCAGCGG
TCAGGAAAAATCTCAATTCACCGAAATACAGAAAGAAGATTTGACTTGTT
TCAGGATTTACGAGAGAAATGGCAACCCTGACGAACCCTTAGTGGTCAAC
GGCTATTGCTATTTGTCAAACAATCTGAAATGAAGAATAAGTTGGCCCAT
CTTTCTTGACATTAACTATACGAACGTCAAATTTTGAGGAAATTATAAAT
TGGTTTATAATAAAT
back to top

protein sequence of SMED30036018-orf-1

>SMED30036018-orf-1 ID=SMED30036018-orf-1|Name=SMED30036018-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=346bp
MFKKFLLISVFCLSLKSQVHEFRNRHNFAQVFPAKPNNEVSLVNIKITHL
SFEIGKPINIKSLKEKEHLKIISGMSLTVRCRVTGKPEPTVYWMKNSKKL
DSNEEDRIFTTKKNEAVLHFPSISLADSSNYSCKASNSNGFINKWFQIKV
IQNDSSNDQKDDWTTKLNIKPCSENSRCQFRDCKILDNMVACRMRCEISK
LSSSQMPRKSCPTIENPKKIYCLQKYQIIFALILIALILFIILCLFWYSF
RAKINLKINTHQDISRKGFKLPTFQLDSEEVFKDLPTDVLFNCSNKVKAI
SGQEKSQFTEIQKEDLTCFRIYERNGNPDEPLVVNGYCYLSNNLK*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: cellular component
TermDefinition
GO:0001725stress fiber
GO:0005634nucleus
GO:0005829cytosol
GO:0005856cytoskeleton
GO:0005884actin filament
GO:0005886plasma membrane
GO:0005925focal adhesion
GO:0015629actin cytoskeleton
GO:0030018Z disc
GO:0030027lamellipodium
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: biological process
TermDefinition
GO:0003334keratinocyte development
GO:0003382epithelial cell morphogenesis
GO:0007155cell adhesion
GO:0007411axon guidance
GO:0016477cell migration
GO:0030036actin cytoskeleton organization
GO:0006468protein phosphorylation
GO:0008284positive regulation of cell proliferation
GO:0008543fibroblast growth factor receptor signaling pathway
GO:0016310phosphorylation
GO:0018108peptidyl-tyrosine phosphorylation
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR036179Ig-like_dom_sf
IPR003599Ig_sub
IPR003598Ig_sub2
IPR013783Ig-like_fold
IPR007110Ig-like_dom
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
GO:0016301kinase activity
GO:0016740transferase activity
GO:0000166nucleotide binding
GO:0004672protein kinase activity
GO:0004713protein tyrosine kinase activity
GO:0004714transmembrane receptor protein tyrosine kinase activity
GO:0005007fibroblast growth factor-activated receptor activity
GO:0005524ATP binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003599Immunoglobulin subtypeSMARTSM00409IG_3ccoord: 66..153
e-value: 1.6E-4
score: 31.1
IPR003598Immunoglobulin subtype 2SMARTSM00408igc2_5coord: 72..140
e-value: 5.6E-14
score: 62.4
IPR013783Immunoglobulin-like foldGENE3DG3DSA:2.60.40.10coord: 49..152
e-value: 1.8E-19
score: 71.8
NoneNo IPR availablePFAMPF13927Ig_3coord: 69..137
e-value: 6.5E-14
score: 52.3
NoneNo IPR availablePANTHERPTHR42757FAMILY NOT NAMEDcoord: 44..151
NoneNo IPR availablePANTHERPTHR42757:SF32PROTEIN AMALGAMcoord: 44..151
NoneNo IPR availableCDDcd00096Igcoord: 77..144
e-value: 1.15284E-14
score: 66.1116
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.616
NoneNo IPR availableTMHMMTMhelixcoord: 228..250
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 57..139
score: 12.658
IPR036179Immunoglobulin-like domain superfamilySUPERFAMILYSSF48726Immunoglobulincoord: 66..151