SMED30036000

Overview
NameSMED30036000
Smed IDSMED30036000
Length (bp)1173
Neoblast Clusters

Zeng et. al., 2018



 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30036000

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30036000SMESG000052347.1 SmedASXL_065322SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30036000 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.003212:27870..29067 +4883
Homology
[Close]
BLAST of SMED30036000 vs. TrEMBL
Match: A0A0V1ANV1 (BED-type domain-containing protein (Fragment) OS=Trichinella spiralis OX=6334 GN=T01_9761 PE=4 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.523e-26
Identity = 77/243 (31.69%), Postives = 129/243 (53.09%), Query Frame = -1 
Query:  460 KLKEFQIDI*RDIISSTHDATAVIVKYGIILGITSQLCYNHGLHLAITDILYKKKPTTSFYE---------EDEEIPVYVEHA--VENSKDMTI-NSFGDANIVFGQHE*DYFLAKNNILQGYVKDKED*LLQLMLDMKIHWNSLIKMIKHFIQIKDLVNKALSDLGQ*KN--SDRHIAILKEF*DALLPLETAVKELGKNSATLLTAEGVYKFVFERLEECGMDLSKKLLKQIKNRINERRD 1146
            KL++F++D+  DI++   D+  V+ K G +LGI  QLCYN+G+HLA+ D++Y      S            ED++   Y+E+A  ++N  D  + N       +           KN+ LQ   +D     L L++D ++ WNS++  ++ F+++KD V  AL  L    N   +  + ++ +  +AL P+   V  LG+   +L TAE V +F+   L+E   D++KKL   +KNRI ERR+
Sbjct:  184 KLEQFELDMKTDIVALVTDSAFVMRKIGRLLGIEHQLCYNNGIHLAVVDVIYCVSNCASVESFNSSDDENCEDDDFDEYLENAPDIKNEFDAEVGNVVKKVRKIVASFR--RSPVKNDCLQKMCEDMLGKNLALIMDSRVRWNSMLTNMRRFLEMKDCVKSALKSLSDVDNFLYETELTLISDIVNALEPVAVCVNALGRKDCSLATAETVLEFLLRNLKEQRSDIAKKLFNAMKNRIEERRN 424
[Close]
BLAST of SMED30036000 vs. TrEMBL
Match: A0A0J7KNG8 (Dimer_Tnp_hAT domain-containing protein OS=Lasius niger OX=67767 GN=RF55_8155 PE=4 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.895e-22
Identity = 83/263 (31.56%), Postives = 132/263 (50.19%), Query Frame = -1 
Query:  463 VENKLKEFQIDI*RDIISSTHDATAVIVKYGIILGITSQLCYNHGLHLAITDILYKKKPT-----------------------TSFYEEDEE-------IPVYVEHAVENSKDMTINSFGDANIVFGQHE*DYFLAKNN-ILQGYVKDKED*LLQLMLDMKIHWNSLIKMIKHFIQIKDLVNKALSDL-GQ*KNSDRHIAILKEF*DALLPLETAVKELGKNSATLLTAEGVYKFVFERLEECGMDLSKKLLKQIKNRINERR 1155
            VE  LK F I+I  DI++ T D   V++K G ++    Q C+ HG+ LAI DILYK  P                        +   ++D E       IP  V+ A  N KD+ I        +F +        KN+ ILQ Y++++ D  L+L+LD K  WNSL+ M++ F  ++  ++KAL DL  + + ++     + +  ++L P++  VK L +  ATL+TAE   +F+ E+L+     LS KL   ++ RI +RR
Sbjct:  119 VEEHLKIFNINIKDDIVAITADGPNVMIKVGNLMPCFQQRCFAHGIQLAIIDILYKDLPEEEAQDQEGLRRFQEIDNADQSELSDVDDDDNEGSFIVDCIPSSVKIA-SNYKDL-ITKVRKVVKIFRRSP-----TKNDLILQKYIQEEHDKRLELILDCKTRWNSLVNMLERFYIVRLCISKALIDLRSEIRFTETEWFAINDLKNSLQPVKLGVKVLCRRDATLITAETTVRFILEKLDNQSTPLSTKLAAALRRRIKQRR 374
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BLAST of SMED30036000 vs. TrEMBL
Match: A0A4C1WY75 (Uncharacterized protein OS=Eumeta variegata OX=151549 GN=EVAR_35857_1 PE=4 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.474e-20
Identity = 76/257 (29.57%), Postives = 125/257 (48.64%), Query Frame = -1 
Query:  457 KLKEFQIDI*RDIISSTHDATAVIVKYGIILGITSQLCYNHGLHLAITDILYKKKPTTSFYEEDEEIPVYVEHAVENSKDMTINSFGDANIVFG--------QHE*DYFLAK--------------NNILQGYVKDKED*LLQLMLDMKIHWNSLIKMIKHFIQIKDLVNKALSDLGQ*KN-----SDRHIAILKEF*DALLPLETAVKELGKNSATLLTAEGVYKFVFERLEECGMDLSKKLLKQIKNRINERRDK 1146
            KL EF + +  DI+  T D  +V+ K G ++    QLCY HG+ L ITD++YKK   ++  EE E+  +    + E  + +  N      + F           E    ++K              N++LQ Y++ +    +QL+LD K  W+S+  MI  + ++K  V K L DL    N     +D   A+L +  + L P++ AV+ L +    L++AE   +F+  +L      LS+KL+  + NRI+ERR K
Sbjct:   71 KLSEFDLSLDNDIVGITTDGASVMKKVGRLIEPLQQLCYAHGVQLGITDVIYKKTVQSNPEEEFEDPELNTNRSAEEEEVLGDNPDNYDGLYFSLPIRQVDLGTEYQMIISKLRKCVKLFKNSPTKNDMLQIYIQQEFGKTIQLVLDCKTRWSSICNMISTYNRVKQCVAKTLVDLSLSSNPEYFFTDEEHAVLIDLENTLQPVKLAVEVLCRQDIDLVSAEHTLRFMVRKLGNLKTPLSEKLVSSMNNRISERRIK 327
[Close]
BLAST of SMED30036000 vs. TrEMBL
Match: A0A4Y2LA02 (Uncharacterized protein OS=Araneus ventricosus OX=182803 GN=AVEN_237838_1 PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.796e-19
Identity = 79/238 (33.19%), Postives = 118/238 (49.58%), Query Frame = -1 
Query:  532 VENKLKEFQIDI*RDIISSTHDATAVIVKYGIILGITSQLCYNHGLHLAITDILYKK--------KPTTS----------FYEEDEEIPVYVEHAVEN-----SKDMTINSFGDANIV------FGQHE*DYFLAKNNILQGYVKDKED*LLQLMLDMKIHWNSLIKMIKHFIQIKDLVNKALSDLGQ-*KNSDRHIAILKEF*DALLPLETAVKELGKNSATLLTAEGVYKFVFERL 1155
            ++N+L+ F +D   DII  T D  +V+VK G ++    QLC++HGLHLA+ DILYKK        +  TS            +  EE  V V    +      S+   I  + D   V      F +    Y    +  LQ YVK+     L L+LD +  WN L+ MI+ F ++K  ++KAL D+G   K SD     +K+  D+L P + A++ L +  +TLLTAE   KF+  +L
Sbjct:  208 IKNRLESFGLDSDTDIIGVTTDGASVMVKVGKLMSCYHQLCFSHGLHLAVVDILYKKNIEREEAHQEITSNESDTDDDDDTNDTHEEQGVTVTTTTDPRHLHLSRAEVIPRYNDLQKVRKVVKLFKRSPTKY----DTYLQKYVKEDTCKQLSLILDCRTRWNGLLAMIERFHKLKVCIDKALIDMGSDTKFSDLEWTKIKDLIDSLQPSKLAIEALCRRDSTLLTAETTLKFILGKL 441
[Close]
BLAST of SMED30036000 vs. TrEMBL
Match: A0A4Y2BSA6 (Putative RNA-binding protein 19 OS=Araneus ventricosus OX=182803 GN=Rbm19 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.269e-19
Identity = 82/258 (31.78%), Postives = 128/258 (49.61%), Query Frame = -1 
Query:  463 FQIDI*RDIISSTHDATAVIVKYGIILGITSQLCYNHGLHLAITDILYKKKPTTSFYEEDEEIPVYVEHAVENSKDM---------TINSFGD--------ANIV----------------FGQHE*DYFLAKNNILQGYVKDKED*LLQLMLDMKIHWNSLIKMIKHFIQIKDLVNKALSDLG-Q*KNSDRHIAILKEF*DALLPLETAVKELGKNSATLLTAEGVYKFVFERLEECGMDLSKKLLKQIKNRINERR 1134
            F +D   DII  T D  +V++K G ++    QLC+ HGL LA+ DILYKK    +  +E+E   +    +  + +DM         T+ +  D        A ++                F +    Y +     LQ YVK+     L L+LD    WNSL+ MI+ F ++K  ++KAL D+G + K S+   + +K+  D+L P + AV+ L +  +TLLTAE   KF+ E+L      LS +L + ++ RI ERR
Sbjct:  753 FSLDSDTDIIGVTTDGASVMIKVGKLMSCYHQLCFAHGLQLAMVDILYKK----NIEKEEEHQEITSNESDTDDEDMNDTHEEQGVTVTATTDPRHLHLTRAEVIPRYYDLLQKVRKVMKLFKRSPTKYDM----YLQKYVKEDTGKELSLILDCCTCWNSLLAMIERFHKLKVCIDKALIDIGSETKFSNLEWSKIKDLIDSLQPFKLAVEALCRRDSTLLTAETTLKFILEKLLTQDTVLSAQLSEVLRVRIKERR 1002
[Close]
BLAST of SMED30036000 vs. Planmine SMEST
Match: SMESG000050481.1 (SMESG000050481.1)

HSP 1 Score: 124.405 bits (311), Expect = 1.849e-32
Identity = 80/203 (39.41%), Postives = 114/203 (56.16%), Query Frame = -1 
Query:  460 ILGITSQLCYNHGLHLAITDILYKKK---PTTSFYEEDEEIPVYVEHAVENSKDMTINSFGDANIVFGQHE*DYFLAKNNILQGYVKDKED*LLQLMLDMKIHWNSLIKMIKHFIQIKDLVNKALSDLGQ*KNSDRHIAILKEF*DALLPLETAVKELGKNSATLLTAEGVYKFVFERLEECGMDLSKKLLKQIKNRINERRD 1059
            +LG+ +QLC+NHGLHLA+ D  Y  K   P   F + +  I   +E  VE   D T + + D N+ F +   D      +     +  K    L+L LD+K  WNSL  MI  F+ + + VNK+L +L      +  I  L+   D L P+ETAV EL KN A L+TAEG YKF+FE+L+    +++KKL+  IK R++ERRD
Sbjct:    4 LLGVLNQLCHNHGLHLAVMDCFYIPKTSIPNEVFDKTENFIDEGMEEEVEG--DSTDDQYSDYNLEFIEENEDAMTLNIDQTIKNLSTKIGEKLKLKLDIKTRWNSLSVMIGRFLILSECVNKSLLELNFDPIPENDIFELQNLVDFLAPVETAVTELSKNDANLITAEGAYKFLFEKLQPMQANIAKKLIHVIKKRMDERRD 204
[Close]
BLAST of SMED30036000 vs. Planmine SMEST
Match: SMESG000052347.1 (SMESG000052347.1)

HSP 1 Score: 117.472 bits (293), Expect = 2.328e-32
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = -3 
Query:  203 MTLLIFLETAAFIALVVEIFKRIHPPVILXXXXXXXXXXXXXXXXXXESLSSEVCNKLSLQKQLENAIASITHVEKQNEESCT 451
            MTLLIFLETAA IALVVEIFKRIHPPVILNDDYEEITEEITIENEDEESLSSEVCNKLSLQKQLENAIASITHVEKQNEESCT
Sbjct:    1 MTLLIFLETAASIALVVEIFKRIHPPVILNDDYEEITEEITIENEDEESLSSEVCNKLSLQKQLENAIASITHVEKQNEESCT 83
[Close]
BLAST of SMED30036000 vs. Planmine SMEST
Match: SMESG000081415.1 (SMESG000081415.1)

HSP 1 Score: 125.176 bits (313), Expect = 1.235e-31
Identity = 86/245 (35.10%), Postives = 135/245 (55.10%), Query Frame = -1 
Query:  457 VENKLKEFQIDI*RDIISSTHDATAVIVKYGIILGITSQLCYNHGLHLAITDILYKKKPTTSFYEEDEEIPVYVEHAVENSKDMTINSF-GDANIVFGQH----E*DYF------LAKNNILQGYVKDKED*LLQLMLDMKIHWNSLIKMIKHFIQIKDLVNKALSDLGQ*K-NSDRHIAILKEF*DALLPLETAVKELGKNSATLLTAEGVYKFVFERLEECGMDLSKKLLKQIKNRINERRDK 1155
            VE KL ++ I + R+I++ST D ++V+ KY  +  I +Q C NH +HLA+ +  Y K        + E       +A  +  +   NSF GD N+         E  Y         +N+ILQ YV+DKE   L+L+LD +  WNSLI M++  + ++  +  AL ++G+    +++   IL    + L P E AVKEL K+++TLLTAEGV  F+F ++++    L KK    +K RI+ERR+K
Sbjct:  129 VEQKLMDYGIKL-RNILASTQDVSSVMKKYAQLNKIENQFCINHAIHLAVVETFYNKNNVIDAISDSE-------NADGDEDENQFNSFAGDHNLNIDNDIDNTEYTYIRFFRKSPVRNDILQRYVEDKEGKKLKLILDCRTRWNSLIHMMERLVLLQVRIKHALEEIGRDDLYNEKDFNILANLIEILKPTELAVKELSKHTSTLLTAEGVLTFLFTQMKQNNTALGKKFYNSLKIRISERRNK 365
[Close]
BLAST of SMED30036000 vs. Planmine SMEST
Match: SMESG000077975.1 (SMESG000077975.1)

HSP 1 Score: 122.094 bits (305), Expect = 1.906e-30
Identity = 88/260 (33.85%), Postives = 137/260 (52.69%), Query Frame = -1 
Query:  457 VENKLKEFQIDI*RDIISSTHDATAVIVKYGIILGITSQLCYNHGLHLAITDILYKKK--------PTTSFYEEDE----EIPVYVEHAVENSKDMT--INSFGDANI------------VFGQHE*DYFLAKNNILQGYVKDKED*LLQLMLDMKIHWNSLIKMIKHFIQIKDLVNKALSDLGQ*K-NSDRHIAILKEF*DALLPLETAVKELGKNSATLLTAEGVYKFVFERLEECGMDLSKKLLKQIKNRINERRDK 1155
            VE KL ++ I + R+I++ST D  +V+ KY  +  I +Q C NH +HLA+ +  Y K            +  +EDE        Y    ++N  D T    S  DANI             F +        +N+ILQ YV+DKE   L+L+LD +  WNS+I M++  + ++  +  AL ++G+    +++   IL    + L P E AVKEL K+++TLLTAEGV  F+F ++++    L KK    +K RI+ERR+K
Sbjct:  195 VEQKLMDYGIKL-RNILTSTQDGASVMKKYAQLNKIENQFCINHAIHLAVVETFYNKNNVIDEISDSENADGDEDENQFNSFAGYHNLNIDNDIDNTEYTYSLDDANINEILQNFRKTVRFFRKSP-----VRNDILQRYVEDKEGKKLKLILDCRTRWNSIIPMMERLVLLQVCIKHALEEIGRDDLYNEKDFNILANLIEILKPTELAVKELSKHTSTLLTAEGVLTFLFTQMKQNNTALGKKFYNSLKIRISERRNK 448
[Close]
BLAST of SMED30036000 vs. Planmine SMEST
Match: SMESG000012010.1 (SMESG000012010.1)

HSP 1 Score: 119.783 bits (299), Expect = 1.859e-29
Identity = 83/236 (35.17%), Postives = 125/236 (52.97%), Query Frame = -1 
Query:  457 VENKLKEFQIDI*RDIISSTHDATAVIVKYGIILGITSQLCYNHGLHLAITDILYKKK---PTTSFYEEDEEIPVYVEHAVENSKDMTINSFGDANIVFGQHE*DYFLAKNNILQGYVKDKED*LLQLMLDMKIHWNSLIKMIKHFIQIKDLVNKALSDLGQ*KNSDRHIAILKEF*DALLPLETAVKELGKNSATLLTAEGVYKFVFERLEECGMDLSKKLLKQIKNRINERRDK 1155
            VE KL +F+I I  D+I ST+DA  VI KY  ILG+ +QLC+NH LHLA+ D  Y  K   P   F + +  +   +E  VE   D T + + D N+ F                  +++ ED     ++ + I+++  IK       + + VN +L +L      +  I  L+   D L P+E AV EL +N + L+ AEGVYKF+FE+L+    +++KKL+  IK R+NER D 
Sbjct:   86 VEAKLTDFEIFIKNDVIVSTNDAATVIKKYDNILGVFNQLCHNHALHLAVMDCFYIPKTSIPNQVFDDTENFVDEGMEEEVEG--DSTEDQYSDYNLEF------------------IEENED-----VMTLNINFDQTIK------NLIECVNNSLLELNFDPIPENDIFALQNLVDVLAPVEIAVTELSQNDSNLIQAEGVYKFLFEKLQPIQTNIAKKLILTIKKRMNERIDP 290

HSP 2 Score: 65.855 bits (159), Expect = 1.683e-11
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = -1 
Query:  457 DRHIAILKEF*DALLPLETAVKELGKNSATLLTAEGVYKFVFERLEECGMDLSKKLLKQIKNRINERRDK 666
            +  I  L+   D L P+E AV EL +N + L+ AEGVYKF+FE+L+    +++KKL+  IK R+NER D 
Sbjct:  364 ENDIFALQNLVDVLAPVEIAVTELSQNDSNLIQAEGVYKFLFEKLQPIQTNIAKKLILTIKKRMNERIDP 433
The following BLAST results are available for this feature:
BLAST of SMED30036000 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30036000 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30036000 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30036000 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30036000 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30036000 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30036000 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30036000 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0V1ANV13.523e-2631.69BED-type domain-containing protein (Fragment) OS=T... [more]
A0A0J7KNG85.895e-2231.56Dimer_Tnp_hAT domain-containing protein OS=Lasius ... [more]
A0A4C1WY751.474e-2029.57Uncharacterized protein OS=Eumeta variegata OX=151... [more]
A0A4Y2LA022.796e-1933.19Uncharacterized protein OS=Araneus ventricosus OX=... [more]
A0A4Y2BSA67.269e-1931.78Putative RNA-binding protein 19 OS=Araneus ventric... [more]
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BLAST of SMED30036000 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30036000 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30036000 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30036000 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30036000 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30036000 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000050481.11.849e-3239.41SMESG000050481.1[more]
SMESG000052347.12.328e-3298.80SMESG000052347.1[more]
SMESG000081415.11.235e-3135.10SMESG000081415.1[more]
SMESG000077975.11.906e-3033.85SMESG000077975.1[more]
SMESG000012010.11.859e-2935.17SMESG000012010.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30036000 ID=SMED30036000|Name=SMED30036000|organism=Schmidtea mediterranea sexual|type=transcript|length=1173bp
GGAATTTAAAAAAAAATTATTGCATTAAATGTCTCGAAATTGAACCGAGT
TAAAATTTTTGTCCTGGTGAGACAACAATTGAAAATACGCGCTCCGTTGC
AGTCGATGTAGGTTTTATTGTTAATAATGCGCGATATAGAATATTAAAAT
TGTCTGCCATTTTTTTATAATTATTTAAATAAATGAAATATTTTTTCAGC
AACGTGCAACTTTCTTCATTCTGCTTCTCAACATGAGTAATTGAAGCTAT
TGCATTCTCAAGTTGTTTTTGCAGTGACAATTTATTGCAAACTTCACTAC
TTAGACTTTCTTCATCTTCATTTTCAATAGTAATTTCTTCAGTAATTTCC
TCATAGTCATCATTTAGAATCACAGGTGGATGTATTCTTTTAAAAATTTC
TACCACCAATGCAATAAAGGCAGCTGTTTCTAAAAATATTAACAGAGTCA
TTAGTATTTATCACGACGTTCATTTATTCGATTTTTTATCTGTTTCAATA
ATTTTTTTGAAAGATCCATACCACATTCTTCTAATCTTTCGAAAACGAAT
TTGTAAACGCCTTCAGCAGTCAAAAGCGTCGCTGAATTTTTGCCTAATTC
TTTTACAGCTGTTTCCAATGGCAACAAAGCATCTCAAAACTCTTTTAAAA
TAGCTATATGCCTGTCAGAATTTTTTTATTGGCCCAAATCACTTAGAGCT
TTATTTACAAGATCTTTAATTTGAATGAAGTGTTTTATCATCTTTATCAA
AGAATTCCAATGGATTTTCATATCCAACATCAACTGCAACAACTAATCCT
CTTTATCTTTAACATATCCTTGTAAAATATTGTTTTTTGCTAGAAAATAA
TCTCATTCGTGTTGTCCGAAGACTATGTTGGCATCTCCAAAACTATTTAT
AGTCATATCTTTACTGTTTTCGACAGCGTGTTCAACATAGACTGGTATTT
CTTCATCTTCTTCATAAAAAGAAGTTGTTGGTTTCTTTTTGTACAATATA
TCGGTTATTGCTAAATGAAGGCCGTGGTTATAACAAAGTTGAGATGTAAT
GCCAAGGATTATTCCATATTTTACAATTACTGCGGTGGCATCATGTGTTG
ATGATATTATGTCTCTTTATATATCAATTTGAAATTCTTTTAATTTATTT
TCAACATAAAGTTTGGTGTCGAG
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protein sequence of SMED30036000-orf-1

>SMED30036000-orf-1 ID=SMED30036000-orf-1|Name=SMED30036000-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=134bp
MTLLIFLETAAFIALVVEIFKRIHPPVILNDDYEEITEEITIENEDEESL
SSEVCNKLSLQKQLENAIASITHVEKQNEESCTLLKKYFIYLNNYKKMAD
NFNILYRALLTIKPTSTATERVFSIVVSPGQKF*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell