Usp domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppEmbryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30035955 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7Note: Hover over icons to view figure legend
Homology
BLAST of Usp domain-containing protein vs. UniProt/SwissProt
Match: sp|A0QZA1|Y3950_MYCS2 (Universal stress protein MSMEG_3950/MSMEI_3859 OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=MSMEG_3950 PE=1 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 6.099e-7 Identity = 41/153 (26.80%), Postives = 75/153 (49.02%), Query Frame = 1 Query: 58 KKESERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIV 516 + +E I++ +D S S A+ W + + + L+H++ P+ + G M A L +E +A+ I++ + +V + + G + IR +S V +I A ++++ NRG G L R LGS S +LH+A PV++V Sbjct: 3 QSATEYGILVGVDSSAESDAAVRWAAREASLHDAPITLMHVIAPVVVSWPAGPYM-ATVLECQEENAR--HAIEQAQKVVADCLGE--THGLTVQTEIRKES-VARTLIDASKS--AQMVVVGNRGMGALGRVLLGSTSTSLLHYASGPVVVV 147
BLAST of Usp domain-containing protein vs. TrEMBL
Match: A0A095AGD1 (Universal stress protein OS=Schistosoma haematobium OX=6185 GN=MS3_01105 PE=4 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.836e-47 Identity = 77/151 (50.99%), Postives = 104/151 (68.87%), Query Frame = 1 Query: 70 ERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPP 522 +R++++PID SE + RA WY NNM ND+V ++IVEP+YNT AVG+ ME P+ ++ +Q IDKGK L ++YIS C+ F+ VD+R G I+ DH A++I+M +RG G+LRRTFLGSVSDYVLHHA PV+IVPP Sbjct: 8 QRVVLLPIDGSEHAERAFHWYLNNMKSSNDIVKFVNIVEPVYNTPAVGLTMETP--PLTDITKIMQDSIDKGKLLGKKYISEAKKYDINCQAFLHVDNRPGAAILKSIEDHNANLIIMGSRGLGVLRRTFLGSVSDYVLHHAHIPVVIVPP 156
BLAST of Usp domain-containing protein vs. TrEMBL
Match: A0A430QIP7 (Usp domain-containing protein OS=Schistosoma bovis OX=6184 GN=DC041_0011032 PE=4 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.836e-47 Identity = 77/151 (50.99%), Postives = 104/151 (68.87%), Query Frame = 1 Query: 70 ERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPP 522 +R++++PID SE + RA WY NNM ND+V ++IVEP+YNT AVG+ ME P+ ++ +Q IDKGK L ++YIS C+ F+ VD+R G I+ DH A++I+M +RG G+LRRTFLGSVSDYVLHHA PV+IVPP Sbjct: 8 QRVVLLPIDGSEHAERAFHWYLNNMKSSNDIVKFVNIVEPVYNTPAVGLTMETP--PLTDITKIMQDSIDKGKLLGKKYISEAKKYDINCQAFLHVDNRPGAAILKSIEDHNANLIIMGSRGLGVLRRTFLGSVSDYVLHHAHIPVVIVPP 156
BLAST of Usp domain-containing protein vs. TrEMBL
Match: A0A183JK49 (Usp domain-containing protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS3077 PE=4 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.836e-47 Identity = 77/151 (50.99%), Postives = 104/151 (68.87%), Query Frame = 1 Query: 70 ERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPP 522 +R++++PID SE + RA WY NNM ND+V ++IVEP+YNT AVG+ ME P+ ++ +Q IDKGK L ++YIS C+ F+ VD+R G I+ DH A++I+M +RG G+LRRTFLGSVSDYVLHHA PV+IVPP Sbjct: 8 QRVVLLPIDGSEHAERAFHWYLNNMKSSNDIVKFVNIVEPVYNTPAVGLTMETP--PLTDITKIMQDSIDKGKLLGKKYISEAKKYDINCQAFLHVDNRPGAAILKSIEDHNANLIIMGSRGLGVLRRTFLGSVSDYVLHHAHIPVVIVPP 156
BLAST of Usp domain-containing protein vs. TrEMBL
Match: A0A183WUS6 (Usp domain-containing protein OS=Trichobilharzia regenti OX=157069 GN=TRE_LOCUS15878 PE=4 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 7.775e-47 Identity = 76/153 (49.67%), Postives = 104/153 (67.97%), Query Frame = 1 Query: 64 ESERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPP 522 E+ R++++PID SE ++RA WY NM + ND+V I+IVEP+Y T AVG+ ME P+ ++ +Q ID GK L ++YI+ G C+ F+ VD+R G ++ DH A+VI+M NRG G +RRTFLGSVS+YVLHHA PVIIVPP Sbjct: 6 ETPRVVLMPIDGSEHAQRAFQWYIENMKRPNDIVKFINIVEPVYATPAVGLTMETP--PLTDITKMMQDSIDNGKVLGKKYITEAKQCGVNCQAFLHVDTRPGAALLKSIEDHNANVIIMGNRGLGAIRRTFLGSVSEYVLHHAHIPVIIVPP 156
BLAST of Usp domain-containing protein vs. TrEMBL
Match: A0A183QK93 (Usp domain-containing protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.657e-46 Identity = 76/151 (50.33%), Postives = 103/151 (68.21%), Query Frame = 1 Query: 70 ERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPP 522 R++++PID SE + RA WY NNM ND+V ++IVEP+Y T AVG+ ME P+ ++ +Q IDKGK L ++YI+ G C+ FI VD+R G ++ DH A++I+M +RG G+LRRTFLGSVSDYVLHHA PV+IVPP Sbjct: 8 SRVVLLPIDGSEHAERAFHWYLNNMRSSNDIVTFVNIVEPVYATPAVGLTMETP--PLTDITKIMQDSIDKGKLLGKKYIAEAKKYGINCQAFIHVDNRPGAALLKSIEDHNANLIIMGSRGLGILRRTFLGSVSDYVLHHAHIPVVIVPP 156
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Match: EDO45800 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RRQ2]) HSP 1 Score: 100.138 bits (248), Expect = 4.170e-27 Identity = 63/158 (39.87%), Postives = 89/158 (56.33%), Query Frame = 1 Query: 46 SLEPKKESERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVP 519 S EPKK R I++PID S+ S A +WY NNM E D + L+H++ ++ A+ + + L +E ++ K + + KAL +Y + K K +R + GE I D D+ILM +RG G +RRT LGSVSDYVLHHA P II+P Sbjct: 3 SEEPKKV--RRILLPIDSSKHSEDAFEWYVNNMHHEEDELILVHVL----DSAAIQTRVSSHGLVDDEFKNEMNKGLKEVKALEEKYKTKAETASLKAKIEVR-GGKPGETICQCSKDEHCDLILMGSRGLGSIRRTILGSVSDYVLHHAHVPTIIIP 153
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Match: EDO44746 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUS8]) HSP 1 Score: 93.5893 bits (231), Expect = 1.472e-24 Identity = 53/155 (34.19%), Postives = 84/155 (54.19%), Query Frame = 1 Query: 70 ERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVE-PIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPPLHR 531 +R ++IP+D S+ S RA +WY ++ + D V +IH E P + G LP +E + + + I K L+ EY ++G C+ F + + GE I + D A ++M +RG G +RRT LGSVSDY +HH+ PV ++PP + Sbjct: 6 KRRVVIPVDGSQHSERAFNWYRQHVHEPGDEVLIIHTQEQPTIPSSPYAYG--GTVLP-DEWNKAVDECIVNAKKLIEEYNKKCKEQGMTCRLF-KGSGQPGETICQLAKDLSAKHVVMGSRGCGTIRRTLLGSVSDYCVHHSSVPVTVIPPTKK 156
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Match: EDO34658 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SNQ5]) HSP 1 Score: 93.2041 bits (230), Expect = 3.507e-24 Identity = 54/161 (33.54%), Postives = 86/161 (53.42%), Query Frame = 1 Query: 61 KESERI-IIIPIDKSEVSRRALDWYSNNMMKENDVVHLIH---IVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPPLHR 531 +ES++ ++I +D SE S RA ++YS NM K+ D V LIH I E G+ W D +++ ++ K ++ + + CK F +V + GE I + AD +++ RG+G +RRTF+GSVS+Y +HHA P+ +VPP R Sbjct: 3 QESQKSRVVIAVDGSEHSDRAFEFYSQNMHKKGDEVLLIHANDIAERHIQLHPYGLATVEGW------DKWLERCTEESKKMLSRFEKKCKENKFNCKLFTKVGN-PGEVICDFTEEKNADQVVLGCRGQGTVRRTFMGSVSEYCIHHATTPITVVPPPDR 156
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Match: EDO34657 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SNQ4]) HSP 1 Score: 92.0485 bits (227), Expect = 7.810e-24 Identity = 59/165 (35.76%), Postives = 87/165 (52.73%), Query Frame = 1 Query: 43 ISLEPKKESERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAW--LPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPPLHR 531 +S EPKK ++I +D SE S RA D+YS +M +++D V LIH N A E +E LD +++ + K L+ + + CK F ++ + GE I + AD I++ RG+ LRRT +GSVSDY + HA KPV +VPP +R Sbjct: 1 MSEEPKKSR---VVIAVDGSEHSDRAFDFYSKSMHRKDDEVLLIHA-----NDFADRHTQEHHHNVATVESLDRWLERCTKESKKLLSSFEKKCKENKFNCKLFTKI-GKPGEVICEFMEEKNADQIVLGCRGQDTLRRTLMGSVSDYCIRHATKPVTVVPPPNR 156
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Match: EDO33143 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7ST34]) HSP 1 Score: 90.8929 bits (224), Expect = 1.557e-23 Identity = 50/149 (33.56%), Postives = 83/149 (55.70%), Query Frame = 1 Query: 73 RIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVP 519 R I+IP+D SE S RA DWY+ + D V ++H +E + + + EE A +++ ++ +A++R Y +K + + V G+ I V D A++I++ RG+G++RRT LGSVSDYV+HH+ PV ++P Sbjct: 4 RKILIPVDGSEHSERAFDWYAELLHSPGDEVLVVHCIE--LPPVPLEHQFPFVFAYYEEWSAMVKETREQHEAMLRSYEDICKEKKLHYEIMMVVGKPAGDVICQVARDVSANLIVLGTRGQGMIRRTILGSVSDYVVHHSHLPVAVIP 150
BLAST of Usp domain-containing protein vs. Planmine SMEST
Match: SMESG000020882.1 (SMESG000020882.1) HSP 1 Score: 350.517 bits (898), Expect = 3.384e-125 Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1 Query: 19 MTDSEQSKISLEPKKESERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPPLHR 531 MTDSEQSKISLEPKKESERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPPLHR Sbjct: 1 MTDSEQSKISLEPKKESERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPPLHR 171
BLAST of Usp domain-containing protein vs. Planmine SMEST
Match: SMESG000020884.1 (SMESG000020884.1) HSP 1 Score: 266.159 bits (679), Expect = 1.718e-92 Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 1 Query: 142 MMKENDVVHLIHIVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPPLHR 531 MM+ENDVVHLIHIVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPPLHR Sbjct: 1 MMRENDVVHLIHIVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPPLHR 130
BLAST of Usp domain-containing protein vs. Planmine SMEST
Match: SMESG000020952.1 (SMESG000020952.1) HSP 1 Score: 224.942 bits (572), Expect = 9.166e-76 Identity = 98/155 (63.23%), Postives = 133/155 (85.81%), Query Frame = 1 Query: 64 ESERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPPLH 528 E ER+I++P+D+SE + RA+DWY N+MK ND+V +IHIVEP+Y + AVGIGME A+LP+E+L++KI+KQ+DKGK+LV+++ L +KGG+ KG++ VDS+VGE II VCH H D+I++ANRGEGL+RRTFLGSVSDYVLHHAD+PV+I+PP H Sbjct: 8 EVERVILMPVDRSEHTERAIDWYVENLMKPNDLVQMIHIVEPMYTSTAVGIGMEVAFLPVEDLESKIKKQLDKGKSLVKKFTHELQEKGGRAKGYVIVDSKVGEAIIKVCHTHKVDLIIVANRGEGLIRRTFLGSVSDYVLHHADRPVVIIPPKH 162
BLAST of Usp domain-containing protein vs. Planmine SMEST
Match: SMESG000020955.1 (SMESG000020955.1) HSP 1 Score: 221.476 bits (563), Expect = 2.445e-74 Identity = 101/156 (64.74%), Postives = 130/156 (83.33%), Query Frame = 1 Query: 64 ESERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAWLPM-EELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPPLH 528 E+ER+I+IPID SE + R +DWY N+MK +D+VH+++IVEPI+N+ + G+ MEAA L M E+ + KI+KQIDKGK LV+ YI L DKGGK KG+IRVDS VGE I+ VCH+H AD++L++NRGEG++RRTFLGSVSDYVLHH D+PVIIVPPLH Sbjct: 9 ETERVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVEPIFNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPPLH 164
BLAST of Usp domain-containing protein vs. Planmine SMEST
Match: SMESG000020954.1 (SMESG000020954.1) HSP 1 Score: 154.451 bits (389), Expect = 6.359e-48 Identity = 69/153 (45.10%), Postives = 105/153 (68.63%), Query Frame = 1 Query: 70 ERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAW-LPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPPL 525 ERIIIIPID + S+R+L WY +NMMK ND VH+I++++P YN VG+ + + P+ D+K+ K+I+ GK LVR YI+ LT +G K G+IR+ +VG+ ++ VC++HL D I++ R + + GS+S YV H+++PVI+VPPL Sbjct: 8 ERIIIIPIDNRDASKRSLAWYLDNMMKPNDTVHIIYVIKPKYNLSTVGLVYKISLATPIGNSDSKLHKRIEDGKELVRSYINELTTRGAKGTGYIRIHPKVGQTVVDVCNEHLGDYIIITKRKKSSFKENLFGSISHYVFSHSNRPVIMVPPL 160 The following BLAST results are available for this feature:
BLAST of Usp domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 1
BLAST of Usp domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Usp domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of Usp domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30035955 ID=SMED30035955|Name=Usp domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=592bpback to top protein sequence of SMED30035955-orf-1 >SMED30035955-orf-1 ID=SMED30035955-orf-1|Name=SMED30035955-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=172bp MTDSEQSKISLEPKKESERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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