SMED30035943

Overview
NameSMED30035943
Smed IDSMED30035943
Length (bp)2419
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30035943 (SMED30035943) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30035943 (SMED30035943) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30035943 (SMED30035943) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30035943 (SMED30035943) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30035943

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
headSMED30035943SMESG000019154.1 SmedASXL_013609SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
neuronSMED30035943SMESG000019154.1 dd_Smed_v4_20646_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
headSMED30035943SMESG000019154.1 dd_Smed_v6_20646_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
headSMED30035943SMESG000019154.1 OX_Smed_1.0.13321ox_Smed_v2PMID:24238224
Kao et al., 2013
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30035943 vs. Planmine SMEST
Match: SMESG000019154.1 (SMESG000019154.1)

HSP 1 Score: 1299.26 bits (3361), Expect = 0.000e+0
Identity = 658/661 (99.55%), Postives = 658/661 (99.55%), Query Frame = 3
Query:  108 MTLILFDYGRFENLSRIFDRKLHYRQRNFSIDVNNSSEVQLNSEAPSKDEEADDVVSPISTVCQGHVMRSTNSDRRMSVPQLSRNKSIVKAREQRIASVVGVPHRHHITIAVNDEPVDIIKTTCTGPCLQSCHINSSTKSNSSLPTHGVKFQNKTDIANESRSTNQSTNIILMTLIYVISTLSVRSIINLYIILNDISNTQRKITLAFLYFFSAMITLTLSLNCFSKPIKSITVRVELVVSVVMILIWSGLHLIPISSWPWLIFTAVLLAIGSSLLWDSQITMLSKWSIYSSSRSQIHAFNDIMSHANIIPTTSVIGHSLHIWSSVLIFILLETMSSNTHSKSLNLSSFPMEITDKYNDSKFKSNFTDLCGIYFKNVDQPKSLKVPDRTMYCLFYICIGXXXXXXXXXXXXXDKSRTITIPSHSQDKDAIHPMIVGHMNQNVSNPIIVHENWVDRIKSSLFIWIRKNSKTLLKLWKCQTLKFTMPTLFTMGLVEGFFISDYNQNFISCYKKPSFIGISMLMFSIGPIAFVNIFPFIAKLRMIEIFSFPISRAIFLCSFLLLALTKVGSHWSYLLVFFPWVIALDNVICLAIFYISASSLPNNLLDSSIVIQRVLRMLGIAIYSVISGAFGTLSALIITILAHIFISPLIIVLGSLVRCSKN 2090
            MTLILFDYGRFENLSRIFDRKLHYRQRNFSIDVNNSSEVQLNSEAPSKDEEADDVVSPISTVCQGHVMRSTNSDRRMSVPQLSRNKSIVKAREQRIASVVGVPHRHHITIAVNDEPVDIIKTTCTGPCLQSCHINSSTKSNSSLPTHGVKFQNKTDIANESRSTNQSTNIILMTLIYVISTLSVRSIINLYIILNDISNTQRKITLAFLYFFSAMITLTLSLNCFSKPIKSITVRVELVVSVVMILIWSGLHLIPISSWPWLIFTAVLLAIGSSLLWDSQITMLSKWSIYSSSRSQIHAFNDIMSHANIIPTTSVIGHSLHIWSSVLIFILLETMSSNTHSKSLNLSSFPMEITDKYNDSKFKSNFTDLCGIYFKNVDQ KSLKVPDRTMYCLFYICIGLNVVSLILVVLLLDKSRTITIPSH QDKDAIHPMIVGHMNQNVSNPIIVHENWVDRIKSSLFIWIRKNSKTLLKLWKCQTLKFTMPTLFTMGLVEGFFISDYNQNFISCYKKPSFIGISMLMFSIGPIAFVNIFPFIAKLRMIEIFS PISRAIFLCSFLLLALTKVGSHWSYLLVFFPWVIALDNVICLAIFYISASSLPNNLLDSSIVIQRVLRMLGIAIYSVISGAFGTLSALIITILAHIFISPLIIVLGSLVRCSKN
Sbjct:    1 MTLILFDYGRFENLSRIFDRKLHYRQRNFSIDVNNSSEVQLNSEAPSKDEEADDVVSPISTVCQGHVMRSTNSDRRMSVPQLSRNKSIVKAREQRIASVVGVPHRHHITIAVNDEPVDIIKTTCTGPCLQSCHINSSTKSNSSLPTHGVKFQNKTDIANESRSTNQSTNIILMTLIYVISTLSVRSIINLYIILNDISNTQRKITLAFLYFFSAMITLTLSLNCFSKPIKSITVRVELVVSVVMILIWSGLHLIPISSWPWLIFTAVLLAIGSSLLWDSQITMLSKWSIYSSSRSQIHAFNDIMSHANIIPTTSVIGHSLHIWSSVLIFILLETMSSNTHSKSLNLSSFPMEITDKYNDSKFKSNFTDLCGIYFKNVDQQKSLKVPDRTMYCLFYICIGLNVVSLILVVLLLDKSRTITIPSHLQDKDAIHPMIVGHMNQNVSNPIIVHENWVDRIKSSLFIWIRKNSKTLLKLWKCQTLKFTMPTLFTMGLVEGFFISDYNQNFISCYKKPSFIGISMLMFSIGPIAFVNIFPFIAKLRMIEIFSCPISRAIFLCSFLLLALTKVGSHWSYLLVFFPWVIALDNVICLAIFYISASSLPNNLLDSSIVIQRVLRMLGIAIYSVISGAFGTLSALIITILAHIFISPLIIVLGSLVRCSKN 661          
BLAST of SMED30035943 vs. Planmine SMEST
Match: SMESG000019154.1 (SMESG000019154.1)

HSP 1 Score: 1273.84 bits (3295), Expect = 0.000e+0
Identity = 649/652 (99.54%), Postives = 649/652 (99.54%), Query Frame = 3
Query:  108 MTLILFDYGRFENLSRIFDRKLHYRQRNFSIDVNNSSEVQLNSEAPSKDEEADDVVSPISTVCQGHVMRSTNSDRRMSVPQLSRNKSIVKAREQRIASVVGVPHRHHITIAVNDEPVDIIKTTCTGPCLQSCHINSSTKSNSSLPTHGVKFQNKTDIANESRSTNQSTNIILMTLIYVISTLSVRSIINLYIILNDISNTQRKITLAFLYFFSAMITLTLSLNCFSKPIKSITVRVELVVSVVMILIWSGLHLIPISSWPWLIFTAVLLAIGSSLLWDSQITMLSKWSIYSSSRSQIHAFNDIMSHANIIPTTSVIGHSLHIWSSVLIFILLETMSSNTHSKSLNLSSFPMEITDKYNDSKFKSNFTDLCGIYFKNVDQPKSLKVPDRTMYCLFYICIGXXXXXXXXXXXXXDKSRTITIPSHSQDKDAIHPMIVGHMNQNVSNPIIVHENWVDRIKSSLFIWIRKNSKTLLKLWKCQTLKFTMPTLFTMGLVEGFFISDYNQNFISCYKKPSFIGISMLMFSIGPIAFVNIFPFIAKLRMIEIFSFPISRAIFLCSFLLLALTKVGSHWSYLLVFFPWVIALDNVICLAIFYISASSLPNNLLDSSIVIQRVLRMLGIAIYSVISGAFGTLSALIITILAHIFISPLIIVL 2063
            MTLILFDYGRFENLSRIFDRKLHYRQRNFSIDVNNSSEVQLNSEAPSKDEEADDVVSPISTVCQGHVMRSTNSDRRMSVPQLSRNKSIVKAREQRIASVVGVPHRHHITIAVNDEPVDIIKTTCTGPCLQSCHINSSTKSNSSLPTHGVKFQNKTDIANESRSTNQSTNIILMTLIYVISTLSVRSIINLYIILNDISNTQRKITLAFLYFFSAMITLTLSLNCFSKPIKSITVRVELVVSVVMILIWSGLHLIPISSWPWLIFTAVLLAIGSSLLWDSQITMLSKWSIYSSSRSQIHAFNDIMSHANIIPTTSVIGHSLHIWSSVLIFILLETMSSNTHSKSLNLSSFPMEITDKYNDSKFKSNFTDLCGIYFKNVDQ KSLKVPDRTMYCLFYICIGLNVVSLILVVLLLDKSRTITIPSH QDKDAIHPMIVGHMNQNVSNPIIVHENWVDRIKSSLFIWIRKNSKTLLKLWKCQTLKFTMPTLFTMGLVEGFFISDYNQNFISCYKKPSFIGISMLMFSIGPIAFVNIFPFIAKLRMIEIFS PISRAIFLCSFLLLALTKVGSHWSYLLVFFPWVIALDNVICLAIFYISASSLPNNLLDSSIVIQRVLRMLGIAIYSVISGAFGTLSALIITILAHIFISPLIIVL
Sbjct:    1 MTLILFDYGRFENLSRIFDRKLHYRQRNFSIDVNNSSEVQLNSEAPSKDEEADDVVSPISTVCQGHVMRSTNSDRRMSVPQLSRNKSIVKAREQRIASVVGVPHRHHITIAVNDEPVDIIKTTCTGPCLQSCHINSSTKSNSSLPTHGVKFQNKTDIANESRSTNQSTNIILMTLIYVISTLSVRSIINLYIILNDISNTQRKITLAFLYFFSAMITLTLSLNCFSKPIKSITVRVELVVSVVMILIWSGLHLIPISSWPWLIFTAVLLAIGSSLLWDSQITMLSKWSIYSSSRSQIHAFNDIMSHANIIPTTSVIGHSLHIWSSVLIFILLETMSSNTHSKSLNLSSFPMEITDKYNDSKFKSNFTDLCGIYFKNVDQQKSLKVPDRTMYCLFYICIGLNVVSLILVVLLLDKSRTITIPSHLQDKDAIHPMIVGHMNQNVSNPIIVHENWVDRIKSSLFIWIRKNSKTLLKLWKCQTLKFTMPTLFTMGLVEGFFISDYNQNFISCYKKPSFIGISMLMFSIGPIAFVNIFPFIAKLRMIEIFSCPISRAIFLCSFLLLALTKVGSHWSYLLVFFPWVIALDNVICLAIFYISASSLPNNLLDSSIVIQRVLRMLGIAIYSVISGAFGTLSALIITILAHIFISPLIIVL 652          
The following BLAST results are available for this feature:
BLAST of SMED30035943 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035943 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035943 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035943 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035943 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035943 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035943 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035943 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035943 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035943 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035943 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035943 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035943 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035943 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000019154.10.000e+099.55SMESG000019154.1[more]
SMESG000019154.10.000e+099.54SMESG000019154.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30035943 ID=SMED30035943|Name=SMED30035943|organism=Schmidtea mediterranea sexual|type=transcript|length=2419bp
AATTGATTGACGATTTATTGTCTTGTCCATGATATGCACAATTGTTTCTC
CCGGGAAATTCATAGGTTTTTGATTTTAGTTTTTTCTGTCGAAACAAATC
TGACACAATGACTTTGATTTTGTTTGATTATGGACGCTTTGAGAATCTCT
CGCGGATCTTTGATAGGAAACTTCATTATAGACAGAGAAATTTTAGTATT
GATGTTAACAACAGTTCCGAAGTACAACTGAATTCCGAGGCACCATCAAA
AGACGAAGAAGCCGACGACGTAGTGTCTCCGATTTCAACGGTCTGTCAAG
GTCATGTCATGAGATCTACGAATTCTGATCGGCGAATGTCAGTTCCGCAA
TTGTCGAGAAATAAATCCATCGTTAAAGCAAGAGAACAGAGAATCGCATC
AGTTGTTGGAGTACCCCATCGGCATCATATCACTATTGCGGTCAACGACG
AGCCGGTTGATATAATTAAAACTACATGTACAGGACCTTGTTTGCAATCT
TGTCATATTAACTCGTCAACTAAATCCAATTCCTCACTGCCAACTCATGG
GGTAAAATTTCAAAACAAAACCGACATAGCGAATGAATCCCGAAGCACGA
ATCAATCGACAAATATCATTCTGATGACTTTGATATACGTCATTAGCACT
TTATCTGTTCGATCTATTATCAACTTATACATTATTTTGAATGACATCTC
AAACACCCAACGCAAAATCACTTTAGCATTCCTGTATTTCTTTTCAGCTA
TGATAACTTTGACATTGAGCCTAAACTGCTTTTCCAAGCCAATCAAATCT
ATTACCGTTCGTGTAGAGTTGGTTGTTTCAGTTGTTATGATATTAATCTG
GTCAGGTTTGCACTTGATACCGATTTCTTCGTGGCCGTGGTTGATTTTTA
CTGCTGTTTTACTTGCAATCGGAAGTAGTCTGTTATGGGACAGTCAAATA
ACAATGCTCTCTAAATGGAGTATTTACTCCTCTAGTAGATCCCAAATTCA
TGCATTCAATGATATCATGTCTCATGCAAATATCATTCCGACAACTTCGG
TAATTGGCCATTCTTTGCATATCTGGTCTAGCGTACTTATTTTCATCCTT
TTGGAAACTATGTCCTCCAACACTCATAGTAAATCGCTTAATCTTTCGTC
ATTCCCAATGGAAATTACTGACAAATACAATGACAGTAAATTTAAATCAA
ATTTCACGGACTTATGCGGAATATATTTTAAAAACGTAGATCAGCCAAAA
TCCTTAAAGGTTCCTGACCGAACAATGTACTGTCTGTTCTACATTTGTAT
TGGGCTCAATGTCGTCTCTTTAATACTAGTGGTGCTCCTGCTGGATAAAT
CAAGGACCATTACAATACCGTCCCATTCACAAGATAAAGATGCTATTCAT
CCCATGATTGTCGGACATATGAATCAGAATGTTTCCAATCCAATTATAGT
ACATGAAAATTGGGTTGATAGAATCAAAAGCAGTTTATTTATCTGGATAA
GGAAAAATTCAAAAACCCTTTTGAAATTGTGGAAATGTCAGACATTAAAA
TTCACAATGCCTACATTATTTACTATGGGATTAGTTGAAGGATTTTTCAT
ATCCGATTATAATCAGAATTTCATAAGCTGTTACAAAAAGCCAAGCTTCA
TAGGGATCTCAATGTTGATGTTCTCAATTGGTCCTATTGCATTTGTGAAT
ATATTTCCTTTCATTGCAAAACTACGAATGATTGAAATATTTTCATTTCC
GATTTCCCGGGCTATATTTTTGTGCAGCTTTTTATTGCTTGCACTAACAA
AAGTAGGAAGCCATTGGTCATATTTACTGGTTTTCTTCCCATGGGTCATA
GCTCTCGACAACGTCATTTGCTTAGCCATTTTTTATATAAGCGCATCAAG
TTTACCAAATAACTTATTAGACAGTAGCATTGTCATTCAGAGAGTTCTAC
GAATGCTTGGAATTGCCATTTATTCTGTGATTTCTGGTGCGTTTGGAACT
CTATCTGCGCTAATAATAACGATTTTGGCCCACATTTTCATAAGTCCTTT
GATTATTGTCCTAGGTAGTTTAGTGAGATGCTCCAAAAATTAAAACGCAA
CCTCAACAACGTTCATTGGGAATTTCCGACTATTTCTAGATAGTAAATAA
TGTTGTTTACGGTTATAAATTGTTGTTTATTAGTTGTAAATCGGTCAATG
GGACGTGTTCATTAATGGATAATTGTAATTTCGATTCCGTGTCAATATTT
CTCCTGTTGTCGAATAAAACCGCCGAATTTTTTATTGAAATACTTTTGCC
GTTTGATAATATTTTAATGCGGCTAGCCCGTTTTGACAAGGGGCAAAATC
TGGTGTTTTTCAATGAACTGACTTAGAGATTGCATTTTATTTGCAAGGTT
TTTTGTTTTGTGATACTTT
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protein sequence of SMED30035943-orf-1

>SMED30035943-orf-1 ID=SMED30035943-orf-1|Name=SMED30035943-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=662bp
MTLILFDYGRFENLSRIFDRKLHYRQRNFSIDVNNSSEVQLNSEAPSKDE
EADDVVSPISTVCQGHVMRSTNSDRRMSVPQLSRNKSIVKAREQRIASVV
GVPHRHHITIAVNDEPVDIIKTTCTGPCLQSCHINSSTKSNSSLPTHGVK
FQNKTDIANESRSTNQSTNIILMTLIYVISTLSVRSIINLYIILNDISNT
QRKITLAFLYFFSAMITLTLSLNCFSKPIKSITVRVELVVSVVMILIWSG
LHLIPISSWPWLIFTAVLLAIGSSLLWDSQITMLSKWSIYSSSRSQIHAF
NDIMSHANIIPTTSVIGHSLHIWSSVLIFILLETMSSNTHSKSLNLSSFP
MEITDKYNDSKFKSNFTDLCGIYFKNVDQPKSLKVPDRTMYCLFYICIGL
NVVSLILVVLLLDKSRTITIPSHSQDKDAIHPMIVGHMNQNVSNPIIVHE
NWVDRIKSSLFIWIRKNSKTLLKLWKCQTLKFTMPTLFTMGLVEGFFISD
YNQNFISCYKKPSFIGISMLMFSIGPIAFVNIFPFIAKLRMIEIFSFPIS
RAIFLCSFLLLALTKVGSHWSYLLVFFPWVIALDNVICLAIFYISASSLP
NNLLDSSIVIQRVLRMLGIAIYSVISGAFGTLSALIITILAHIFISPLII
VLGSLVRCSKN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR036259MFS_trans_sf
IPR020846MFS_dom
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19444UNC-93 RELATEDcoord: 153..641
NoneNo IPR availableCDDcd17338MFS_unc93_likecoord: 433..641
e-value: 0.00233465
score: 38.4808
NoneNo IPR availableTMHMMTMhelixcoord: 608..630
NoneNo IPR availableTMHMMTMhelixcoord: 479..498
NoneNo IPR availableTMHMMTMhelixcoord: 390..412
NoneNo IPR availableTMHMMTMhelixcoord: 513..535
NoneNo IPR availableTMHMMTMhelixcoord: 314..336
NoneNo IPR availableTMHMMTMhelixcoord: 634..656
NoneNo IPR availableTMHMMTMhelixcoord: 574..596
NoneNo IPR availableTMHMMTMhelixcoord: 204..226
NoneNo IPR availableTMHMMTMhelixcoord: 172..194
NoneNo IPR availableTMHMMTMhelixcoord: 542..564
NoneNo IPR availableTMHMMTMhelixcoord: 238..256
NoneNo IPR availableTMHMMTMhelixcoord: 260..277
IPR036259MFS transporter superfamilySUPERFAMILYSSF103473MFS general substrate transportercoord: 393..651