TNF receptor associated factor-2
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30035887 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of TNF receptor associated factor-2 vs. TrEMBL
Match: I1ZID8 (TNF receptor associated factor-2 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 7.915e-29 Identity = 70/195 (35.90%), Postives = 109/195 (55.90%), Query Frame = 1 Query: 139 EDMWKMLGKYNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYLSR-NRKCPGNKPDCQIEQLSL-EEIIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKNDEISVHLRNEIYDHSQLLIDWIRNMKNEMTTLI-----------VLKQQETAQNELKKL 684 E + ++L YNF+++ + NLKC +CK LLV+AC C C +C KCI Y+SR N CPG +C+ E L++ I D N +I+++ V CP + C +L+ I H R+C KS CPF +GC + + +++ HL+N + HS+L+ID I NM+N+ L ++K +QNE+ L Sbjct: 4 EKINRLLITYNFEVEGGVPDNLKCDLCKNLLVNACQSRCGCRFCSKCIMEYVSRGNLYCPGGTSECKEENLTICSNIHTDYRVNRKIAKMRVKCPEETCKVYCELVDIEEHLRLCTMKSQNCPFFVLGCNQPKMVIQDLTNHLQNGTFQHSKLIIDIISNMRNDFFGLTTKEVELREDINLIKNHFQSQNEIMML 198
BLAST of TNF receptor associated factor-2 vs. TrEMBL
Match: T1E101 (TRAF-6 OS=Dendrocoelum lacteum OX=27895 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.926e-27 Identity = 78/269 (29.00%), Postives = 152/269 (56.51%), Query Frame = 1 Query: 133 KFEDMWKMLGKYNFD-IDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYLSRNRK-CPGNKPDCQIEQLSLE-EIIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKNDEISVHLRNEIYDHSQLLIDWIRNMKNEMTTLIVLKQQETAQNELKKLEKTIEDKIEEAFNYEEEQQRNEELFRDLKDQLNII---TNNTGELERKIMSIKSNNERDLSFLFESRKKLGEEINQLMNDAD 921 K +++ ++L KYN +D + +L C++C +L+ DAC C C YC CI YLS+N CPG+K +C+ + L+LE ++ + + RIS I+V CP C Y +LL + H C +S+ CP +GC + + DE++ HL +++ H+QL++ + +K+E+ ET + ++ L++ + ++++A N E+ Q E L +L+++ N+I + + E++ +++++ ++ E +L L + +EI + ND + Sbjct: 5 KLDNVQELLSKYNVKRVDESVNNDLLCILCNKLMRDACESACGCHYCYTCIRIYLSQNHNYCPGDKTECKEDYLNLEGDVFRNIRLSTRISRIVVKCPNIRCNYTSELLRLKEHLDKCTPESVECPCVTIGCEEEPLLKDEMAKHLTDQVLRHTQLIMSFCNELKSEIN-----HNNETTKEDISHLKEVL--RVQKALNDEKTAQM-EFLIEELRNKDNMILVLSQDIQEVKNEMITLLTSKESELKKLKSDIQIFRQEIEFMKNDLE 265
BLAST of TNF receptor associated factor-2 vs. TrEMBL
Match: A0A0F7GWW3 (TNF receptor associated factor 4 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 9.079e-13 Identity = 38/107 (35.51%), Postives = 63/107 (58.88%), Query Frame = 1 Query: 355 EEIIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKNDEISVHLRNEIYDHSQLLIDWIRNMKNEMTTLIVLKQQETAQNEL 675 E I D N +I+++ V C C Y D+L + +H R C +S+ CP++ +GC K +I D+++ HL++EI+ H++LL+D++ N NEM L + NEL Sbjct: 14 ENICVDYPMNMKIAKLQVKCKEKSCDYVDELRKMEDHSRTCKYRSVACPYSNIGCDKCNISQDKVTDHLQSEIFVHTKLLMDFVVNFNNEMEMLKANNNGLSPVNEL 120
BLAST of TNF receptor associated factor-2 vs. TrEMBL
Match: A0A3B4AEN3 (TNF receptor-associated factor OS=Periophthalmus magnuspinnatus OX=409849 PE=3 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 8.932e-8 Identity = 38/126 (30.16%), Postives = 63/126 (50.00%), Query Frame = 1 Query: 166 YNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYL-SRNRKCPGNKPDCQIEQLSLEEIIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKN 540 Y+ + DP L+ +C IC L +A C +C+ CI + +KCP + E LS +++ D+ A I + V CP GC ++ +L T+ NH VC+ ++PCP + KS ++ Sbjct: 64 YDVEFDPPLESKYECPICLMALRNAVQTPCGHRFCKNCIEKSIRDTGQKCPVDN-----EMLSEDQLFPDNFAKREILSLTVRCPYPGCSHKMELRTLENHLSVCEFSTLPCPHCQRAVRKSFVEQ 184
BLAST of TNF receptor associated factor-2 vs. TrEMBL
Match: A0A3B4AEF3 (TNF receptor-associated factor OS=Periophthalmus magnuspinnatus OX=409849 PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.244e-7 Identity = 38/126 (30.16%), Postives = 63/126 (50.00%), Query Frame = 1 Query: 166 YNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYL-SRNRKCPGNKPDCQIEQLSLEEIIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKN 540 Y+ + DP L+ +C IC L +A C +C+ CI + +KCP + E LS +++ D+ A I + V CP GC ++ +L T+ NH VC+ ++PCP + KS ++ Sbjct: 64 YDVEFDPPLESKYECPICLMALRNAVQTPCGHRFCKNCIEKSIRDTGQKCPVDN-----EMLSEDQLFPDNFAKREILSLTVRCPYPGCSHKMELRTLENHLSVCEFSTLPCPHCQRAVRKSFVEQ 184
BLAST of TNF receptor associated factor-2 vs. Ensembl Cavefish
Match: traf6 (TNF receptor associated factor 6 [Source:NCBI gene;Acc:103021325]) HSP 1 Score: 51.2174 bits (121), Expect = 1.077e-6 Identity = 38/128 (29.69%), Postives = 61/128 (47.66%), Query Frame = 1 Query: 166 YNFDIDPQLQINLKCLICK---RLLVDACCGLCYCSYC-RKCITPYLSRNRKCPGNKPDCQIEQLSLEEIIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIK 537 Y+ D DP L+ +C IC R V CG +C+ C RK I +KCP + E L+ +++ D+ A I + V C GC+ + +L + NH C ++PCP + KS+++ Sbjct: 56 YDVDFDPPLESKYECPICLMGLRSAVQTPCGHRFCNCCIRKSIR---DTGQKCPVDN-----EVLTEDQLFPDNFAKREILSLTVRCRNVGCMEKMELRHLENHIPHCKFATVPCPQCQESVWKSELE 175
BLAST of TNF receptor associated factor-2 vs. Ensembl Cavefish
Match: traf6 (TNF receptor associated factor 6 [Source:NCBI gene;Acc:103021325]) HSP 1 Score: 51.2174 bits (121), Expect = 1.193e-6 Identity = 38/128 (29.69%), Postives = 61/128 (47.66%), Query Frame = 1 Query: 166 YNFDIDPQLQINLKCLICK---RLLVDACCGLCYCSYC-RKCITPYLSRNRKCPGNKPDCQIEQLSLEEIIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIK 537 Y+ D DP L+ +C IC R V CG +C+ C RK I +KCP + E L+ +++ D+ A I + V C GC+ + +L + NH C ++PCP + KS+++ Sbjct: 56 YDVDFDPPLESKYECPICLMGLRSAVQTPCGHRFCNCCIRKSIR---DTGQKCPVDN-----EVLTEDQLFPDNFAKREILSLTVRCRNVGCMEKMELRHLENHIPHCKFATVPCPQCQESVWKSELE 175
BLAST of TNF receptor associated factor-2 vs. Ensembl Cavefish
Match: traf6 (TNF receptor associated factor 6 [Source:NCBI gene;Acc:103021325]) HSP 1 Score: 51.2174 bits (121), Expect = 1.193e-6 Identity = 38/128 (29.69%), Postives = 61/128 (47.66%), Query Frame = 1 Query: 166 YNFDIDPQLQINLKCLICK---RLLVDACCGLCYCSYC-RKCITPYLSRNRKCPGNKPDCQIEQLSLEEIIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIK 537 Y+ D DP L+ +C IC R V CG +C+ C RK I +KCP + E L+ +++ D+ A I + V C GC+ + +L + NH C ++PCP + KS+++ Sbjct: 56 YDVDFDPPLESKYECPICLMGLRSAVQTPCGHRFCNCCIRKSIR---DTGQKCPVDN-----EVLTEDQLFPDNFAKREILSLTVRCRNVGCMEKMELRHLENHIPHCKFATVPCPQCQESVWKSELE 175
BLAST of TNF receptor associated factor-2 vs. Ensembl Cavefish
Match: traf1 (TNF receptor-associated factor 1-like [Source:NCBI gene;Acc:103045252]) HSP 1 Score: 49.6766 bits (117), Expect = 3.555e-6 Identity = 37/123 (30.08%), Postives = 55/123 (44.72%), Query Frame = 1 Query: 175 DIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYLSRNR-----KC---PGNKPDCQIEQLSLEEIIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGC 519 D+ P ++ C C +L +A C YCR C+ L N+ KC PG++ D + L+L+ D+ N I E+ V C GC +R L +H C+ IPC +GC Sbjct: 21 DLPP---VHFLCSSCNNVLNEAHQTQCGHRYCRACVMWLLRNNKDLICTKCKEDPGSESDSSM-MLTLDHFFSDNAINKEIQELRVHCVNQGCGWRSTLKDFEDHQSQCEYALIPC---NIGC 136
BLAST of TNF receptor associated factor-2 vs. Ensembl Cavefish
Match: traf1 (TNF receptor-associated factor 1-like [Source:NCBI gene;Acc:103045252]) HSP 1 Score: 49.2914 bits (116), Expect = 3.870e-6 Identity = 37/123 (30.08%), Postives = 55/123 (44.72%), Query Frame = 1 Query: 175 DIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYLSRNR-----KC---PGNKPDCQIEQLSLEEIIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGC 519 D+ P ++ C C +L +A C YCR C+ L N+ KC PG++ D + L+L+ D+ N I E+ V C GC +R L +H C+ IPC +GC Sbjct: 21 DLPP---VHFLCSSCNNVLNEAHQTQCGHRYCRACVMWLLRNNKDLICTKCKEDPGSESDSSM-MLTLDHFFSDNAINKEIQELRVHCVNQGCGWRSTLKDFEDHQSQCEYALIPC---NIGC 136
BLAST of TNF receptor associated factor-2 vs. Ensembl Sea Lamprey
Match: traf6 (TNF receptor-associated factor 6 [Source:NCBI gene;Acc:554561]) HSP 1 Score: 48.9062 bits (115), Expect = 1.151e-6 Identity = 36/129 (27.91%), Postives = 54/129 (41.86%), Query Frame = 1 Query: 166 YNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYLSRNRKCPGNKPDCQIEQLSLEE--IIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKNDE 546 Y D +P L+ +C IC L + C +CR CI + R R P C ++ L E + D+ A I + V CP C +R +L + H C+ +PC EM + D+ E Sbjct: 51 YEADFEPPLESKYECPICLMALREPVQTPCGHRFCRACIL-HSMRLRDA---GPKCPVDNAVLHEGQLFPDNFAKREILSLTVRCPNKPCGHRGELRALQEHQLRCEYAQVPCVRCEMPVCRRDLAKHE 175
BLAST of TNF receptor associated factor-2 vs. Ensembl Medaka
Match: traf6 (TNF receptor associated factor 6 [Source:NCBI gene;Acc:101161132]) HSP 1 Score: 48.521 bits (114), Expect = 8.113e-6 Identity = 34/131 (25.95%), Postives = 56/131 (42.75%), Query Frame = 1 Query: 109 N*SMSMNEKFEDMWKMLGKYNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYL-SRNRKCPGNKPDCQIEQLSLEEIIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPC 498 N + SM L Y+ + DP L+ +C IC L +A C +C+ CI + ++CP + E LS +++ D+ A I + V CP C + +L + H C ++PC Sbjct: 45 NPTASMGSSSLQAAAPLQGYDVEFDPPLESKYECPICLMALRNAIQTRCGHRFCKSCIEKSIRDTGQRCPVDN-----EMLSEDQLFPDNFAKREILSLTVRCPNSDCGEKMELRHLEKHLAQCQFATVPC 170
BLAST of TNF receptor associated factor-2 vs. Planmine SMEST
Match: SMESG000020851.1 (SMESG000020851.1) HSP 1 Score: 563.918 bits (1452), Expect = 0.000e+0 Identity = 276/277 (99.64%), Postives = 276/277 (99.64%), Query Frame = 1 Query: 118 MSMNEKFEDMWKMLGKYNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYLSRNRKCPGNKPDCQIEQLSLEEIIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKNDEISVHLRNEIYDHSQLLIDWIRNMKNEMTTLIVLKQQETAQNELKKLEKTIEDKIEEAFNYEEEQQRNEELFRDLKDQLNIITNNTGELERKIMSIKSNNERDLSFLFESRKKLGEEINQLMNDADRHSSEVQLA 948 MSMNEKFEDMWKMLGKYNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYLSRNRKCPGNKPDCQIEQLSLEEIIDDS ANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKNDEISVHLRNEIYDHSQLLIDWIRNMKNEMTTLIVLKQQETAQNELKKLEKTIEDKIEEAFNYEEEQQRNEELFRDLKDQLNIITNNTGELERKIMSIKSNNERDLSFLFESRKKLGEEINQLMNDADRHSSEVQLA Sbjct: 1 MSMNEKFEDMWKMLGKYNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYLSRNRKCPGNKPDCQIEQLSLEEIIDDSAANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKNDEISVHLRNEIYDHSQLLIDWIRNMKNEMTTLIVLKQQETAQNELKKLEKTIEDKIEEAFNYEEEQQRNEELFRDLKDQLNIITNNTGELERKIMSIKSNNERDLSFLFESRKKLGEEINQLMNDADRHSSEVQLA 277
BLAST of TNF receptor associated factor-2 vs. Planmine SMEST
Match: SMESG000020851.1 (SMESG000020851.1) HSP 1 Score: 559.296 bits (1440), Expect = 0.000e+0 Identity = 274/275 (99.64%), Postives = 274/275 (99.64%), Query Frame = 1 Query: 124 MNEKFEDMWKMLGKYNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYLSRNRKCPGNKPDCQIEQLSLEEIIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKNDEISVHLRNEIYDHSQLLIDWIRNMKNEMTTLIVLKQQETAQNELKKLEKTIEDKIEEAFNYEEEQQRNEELFRDLKDQLNIITNNTGELERKIMSIKSNNERDLSFLFESRKKLGEEINQLMNDADRHSSEVQLA 948 MNEKFEDMWKMLGKYNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYLSRNRKCPGNKPDCQIEQLSLEEIIDDS ANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKNDEISVHLRNEIYDHSQLLIDWIRNMKNEMTTLIVLKQQETAQNELKKLEKTIEDKIEEAFNYEEEQQRNEELFRDLKDQLNIITNNTGELERKIMSIKSNNERDLSFLFESRKKLGEEINQLMNDADRHSSEVQLA Sbjct: 1 MNEKFEDMWKMLGKYNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYLSRNRKCPGNKPDCQIEQLSLEEIIDDSAANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKNDEISVHLRNEIYDHSQLLIDWIRNMKNEMTTLIVLKQQETAQNELKKLEKTIEDKIEEAFNYEEEQQRNEELFRDLKDQLNIITNNTGELERKIMSIKSNNERDLSFLFESRKKLGEEINQLMNDADRHSSEVQLA 275
BLAST of TNF receptor associated factor-2 vs. Planmine SMEST
Match: SMESG000012339.1 (SMESG000012339.1) HSP 1 Score: 165.236 bits (417), Expect = 1.074e-46 Identity = 90/244 (36.89%), Postives = 141/244 (57.79%), Query Frame = 1 Query: 145 MWKMLGKYNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYLSRNRK-CPGNKPDCQIEQLSL-EEIIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKNDEISVHLRNEIYDHSQLLIDWIRNMKNEMTTLIVLKQQETAQNELKKLEKTIEDKIEEAFNYEEEQQRNEELFRDLKDQLNIITNNTGEL----ERKIMSIKSNNERDLS 858 MWKM+ +Y FDIDPQL I +KC+IC LL DAC G C C YC+KCI YL+ + K CPGN DC+ +L + I+ D++AN ++S++IV CP +GC ++ L+ + NH + CDK CP+ E+GC + + DE+ HL+ EI H+ LL+ WI + + I Q+ E+ + TI D + + E + + ++ ++L+ IT L +++MS+K NE+ +S Sbjct: 1 MWKMMEQYQFDIDPQLSIYVKCIICNNLLNDACQGPCGCLYCKKCIDKYLANSMKFCPGNHKDCKSSKLDIFSNIVKDNSANNKVSKLIVICPGEGCNFQSTLIEMSNHLQNCDKLPFWCPYAEIGCTTNTMLTDELVDHLQTEIVAHNNLLVKWITSASDNSHQPIAGDQETPIGKEMNNVFLTISDVLSKKQVLINEMLKKLKDLKEKINELSKITKPIKALIDRNNKEMMSMKDANEKYIS 244
BLAST of TNF receptor associated factor-2 vs. Planmine SMEST
Match: SMESG000012339.1 (SMESG000012339.1) HSP 1 Score: 165.236 bits (417), Expect = 1.255e-46 Identity = 90/244 (36.89%), Postives = 141/244 (57.79%), Query Frame = 1 Query: 145 MWKMLGKYNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYLSRNRK-CPGNKPDCQIEQLSL-EEIIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKNDEISVHLRNEIYDHSQLLIDWIRNMKNEMTTLIVLKQQETAQNELKKLEKTIEDKIEEAFNYEEEQQRNEELFRDLKDQLNIITNNTGEL----ERKIMSIKSNNERDLS 858 MWKM+ +Y FDIDPQL I +KC+IC LL DAC G C C YC+KCI YL+ + K CPGN DC+ +L + I+ D++AN ++S++IV CP +GC ++ L+ + NH + CDK CP+ E+GC + + DE+ HL+ EI H+ LL+ WI + + I Q+ E+ + TI D + + E + + ++ ++L+ IT L +++MS+K NE+ +S Sbjct: 7 MWKMMEQYQFDIDPQLSIYVKCIICNNLLNDACQGPCGCLYCKKCIDKYLANSMKFCPGNHKDCKSSKLDIFSNIVKDNSANNKVSKLIVICPGEGCNFQSTLIEMSNHLQNCDKLPFWCPYAEIGCTTNTMLTDELVDHLQTEIVAHNNLLVKWITSASDNSHQPIAGDQETPIGKEMNNVFLTISDVLSKKQVLINEMLKKLKDLKEKINELSKITKPIKALIDRNNKEMMSMKDANEKYIS 250
BLAST of TNF receptor associated factor-2 vs. Planmine SMEST
Match: SMESG000068193.1 (SMESG000068193.1) HSP 1 Score: 157.147 bits (396), Expect = 1.301e-43 Identity = 76/165 (46.06%), Postives = 111/165 (67.27%), Query Frame = 1 Query: 136 FEDMWKMLGKYNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYLSRN-RKCPGNKPDCQIEQLSLE-EIIDDSTANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKNDEISVHLRNEIYDHSQLLIDWIRNMKNE 624 F ++W +L KY+F ID L +LKC+IC +LL+DA LC C+YC+ CI YL ++CPG+ DC++ L L+ II ++ N +I ++IVSCP +GC + +L + +H R+CD +SI CP+ E+GC +S I D IS HL E + HSQLLI++I N+KNE Sbjct: 4 FNEIWNLLEKYSFKIDSHLLQHLKCIICGKLLIDAHESLCGCNYCQNCIESYLENGPKQCPGDSVDCKLTLLELQVNIIRSNSTNRKIVKLIVSCPFNGCNFTGELWELKDHIRICDNRSIYCPYKEIGCSQSQIPIDNISNHLTVEQFQHSQLLINFILNLKNE 168 The following BLAST results are available for this feature:
BLAST of TNF receptor associated factor-2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of TNF receptor associated factor-2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of TNF receptor associated factor-2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of TNF receptor associated factor-2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of TNF receptor associated factor-2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30035887 ID=SMED30035887|Name=TNF receptor associated factor-2|organism=Schmidtea mediterranea sexual|type=transcript|length=1102bpback to top protein sequence of SMED30035887-orf-1 >SMED30035887-orf-1 ID=SMED30035887-orf-1|Name=SMED30035887-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=278bp MSMNEKFEDMWKMLGKYNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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