RING-type domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30035805 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 135Note: Hover over icons to view figure legend
Homology
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: MIB1 (mindbomb E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:21086]) HSP 1 Score: 48.521 bits (114), Expect = 7.026e-7 Identity = 20/61 (32.79%), Postives = 35/61 (57.38%), Query Frame = 1 Query: 139 NVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 +V+ +++ Q E MC +C D ++ F CGH TC +C +++ ECP C+ I R ++ Sbjct: 946 DVQKLQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY 1006
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: MIB2 (mindbomb E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:30577]) HSP 1 Score: 46.595 bits (109), Expect = 3.230e-6 Identity = 18/44 (40.91%), Postives = 25/44 (56.82%), Query Frame = 1 Query: 190 CNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 C IC D+ + + FQCGH C C + L CP C+ I R ++F Sbjct: 925 CPICIDSHIRLVFQCGHGACAPCGSALSACPICRQPIRDRIQIF 968
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: MIB2 (mindbomb E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:30577]) HSP 1 Score: 46.595 bits (109), Expect = 3.252e-6 Identity = 18/44 (40.91%), Postives = 25/44 (56.82%), Query Frame = 1 Query: 190 CNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 C IC D+ + + FQCGH C C + L CP C+ I R ++F Sbjct: 1012 CPICIDSHIRLVFQCGHGACAPCGSALSACPICRQPIRDRIQIF 1055
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: MIB2 (mindbomb E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:30577]) HSP 1 Score: 46.595 bits (109), Expect = 3.254e-6 Identity = 18/44 (40.91%), Postives = 25/44 (56.82%), Query Frame = 1 Query: 190 CNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 C IC D+ + + FQCGH C C + L CP C+ I R ++F Sbjct: 1022 CPICIDSHIRLVFQCGHGACAPCGSALSACPICRQPIRDRIQIF 1065
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: MIB2 (mindbomb E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:30577]) HSP 1 Score: 46.595 bits (109), Expect = 3.255e-6 Identity = 18/44 (40.91%), Postives = 25/44 (56.82%), Query Frame = 1 Query: 190 CNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 C IC D+ + + FQCGH C C + L CP C+ I R ++F Sbjct: 1026 CPICIDSHIRLVFQCGHGACAPCGSALSACPICRQPIRDRIQIF 1069
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Match: mib1 (gene:FBgn0263601 transcript:FBtr0333578) HSP 1 Score: 51.6026 bits (122), Expect = 2.971e-8 Identity = 22/74 (29.73%), Postives = 39/74 (52.70%), Query Frame = 1 Query: 100 IVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 +V + F ++V+ +++ Q E MC +C D ++ F CGH TC +C +Q+ CP C+ + R +F Sbjct: 1042 MVAPSNVNNFQMDDVQKLKQQLQDIKEQTMCPVCFDRIKNMVFLCGHGTCQMCGDQIEGCPICRKTVEKRILLF 1115
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Match: mib1 (gene:FBgn0263601 transcript:FBtr0075520) HSP 1 Score: 51.6026 bits (122), Expect = 2.991e-8 Identity = 22/74 (29.73%), Postives = 39/74 (52.70%), Query Frame = 1 Query: 100 IVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 +V + F ++V+ +++ Q E MC +C D ++ F CGH TC +C +Q+ CP C+ + R +F Sbjct: 1153 MVAPSNVNNFQMDDVQKLKQQLQDIKEQTMCPVCFDRIKNMVFLCGHGTCQMCGDQIEGCPICRKTVEKRILLF 1226
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Match: Diap2 (gene:FBgn0015247 transcript:FBtr0087297) HSP 1 Score: 46.9802 bits (110), Expect = 1.154e-6 Identity = 23/59 (38.98%), Postives = 32/59 (54.24%), Query Frame = 1 Query: 157 EENQPDNEIPMCNICQDNPVSIGF-QCGHL-TCNVCSNQLFECPYCKAGIVSRTKMFFS 327 EEN+ + +C +C D V + F CGHL TCN C+ + CP C+A I + F S Sbjct: 440 EENRQLKDARLCKVCLDEEVGVVFLPCGHLATCNQCAPSVANCPMCRADIKGFVRTFLS 498
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Match: Diap2 (gene:FBgn0015247 transcript:FBtr0087296) HSP 1 Score: 46.9802 bits (110), Expect = 1.154e-6 Identity = 23/59 (38.98%), Postives = 32/59 (54.24%), Query Frame = 1 Query: 157 EENQPDNEIPMCNICQDNPVSIGF-QCGHL-TCNVCSNQLFECPYCKAGIVSRTKMFFS 327 EEN+ + +C +C D V + F CGHL TCN C+ + CP C+A I + F S Sbjct: 440 EENRQLKDARLCKVCLDEEVGVVFLPCGHLATCNQCAPSVANCPMCRADIKGFVRTFLS 498
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: mib2 (mindbomb E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-050628-1]) HSP 1 Score: 50.0618 bits (118), Expect = 1.520e-7 Identity = 20/44 (45.45%), Postives = 27/44 (61.36%), Query Frame = 1 Query: 190 CNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 C IC DN + + FQCGH +C CS+ L CP C+ I R ++F Sbjct: 845 CPICIDNHIRLVFQCGHASCIDCSSALKTCPICRQTIRERIQLF 888
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: mib1 (mindbomb E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:352910]) HSP 1 Score: 49.2914 bits (116), Expect = 2.242e-7 Identity = 20/61 (32.79%), Postives = 35/61 (57.38%), Query Frame = 1 Query: 139 NVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 +V+ +++ Q E MC +C D ++ F CGH TC +C +++ ECP C+ I R ++ Sbjct: 981 DVQKLQQQLQDIKEQTMCPVCLDRLKNMIFMCGHGTCQLCGDRMSECPICRKAIERRILLY 1041
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: mib1 (mindbomb E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:352910]) HSP 1 Score: 49.2914 bits (116), Expect = 2.262e-7 Identity = 20/61 (32.79%), Postives = 35/61 (57.38%), Query Frame = 1 Query: 139 NVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 +V+ +++ Q E MC +C D ++ F CGH TC +C +++ ECP C+ I R ++ Sbjct: 970 DVQKLQQQLQDIKEQTMCPVCLDRLKNMIFMCGHGTCQLCGDRMSECPICRKAIERRILLY 1030
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: mib1 (mindbomb E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:352910]) HSP 1 Score: 49.2914 bits (116), Expect = 2.444e-7 Identity = 20/61 (32.79%), Postives = 35/61 (57.38%), Query Frame = 1 Query: 139 NVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 +V+ +++ Q E MC +C D ++ F CGH TC +C +++ ECP C+ I R ++ Sbjct: 978 DVQKLQQQLQDIKEQTMCPVCLDRLKNMIFMCGHGTCQLCGDRMSECPICRKAIERRILLY 1038
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: mib1 (mindbomb E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:352910]) HSP 1 Score: 44.669 bits (104), Expect = 7.906e-6 Identity = 20/61 (32.79%), Postives = 35/61 (57.38%), Query Frame = 1 Query: 139 NVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 +V+ +++ Q E MC +C D ++ F CGH TC +C +++ ECP C+ I R ++ Sbjct: 173 DVQKLQQQLQDIKEQTMCPVCLDRLKNMIFMCGHGTCQLCGDRMSECPICRKAIERRILLY 233
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: coa7 (cytochrome c oxidase assembly factor 7 (putative) [Source:Xenbase;Acc:XB-GENE-6258829]) HSP 1 Score: 50.0618 bits (118), Expect = 1.960e-7 Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 1 Query: 190 CNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 C IC DN + + FQCGH +C CS L CP C+ I R ++F Sbjct: 908 CPICIDNHIKLVFQCGHGSCTECSTSLTACPICRQLIRERIQIF 951
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: coa7 (cytochrome c oxidase assembly factor 7 (putative) [Source:Xenbase;Acc:XB-GENE-6258829]) HSP 1 Score: 50.0618 bits (118), Expect = 2.051e-7 Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 1 Query: 190 CNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 C IC DN + + FQCGH +C CS L CP C+ I R ++F Sbjct: 879 CPICIDNHIKLVFQCGHGSCTECSTSLTACPICRQLIRERIQIF 922
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: coa7 (cytochrome c oxidase assembly factor 7 (putative) [Source:Xenbase;Acc:XB-GENE-6258829]) HSP 1 Score: 50.0618 bits (118), Expect = 2.057e-7 Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 1 Query: 190 CNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 C IC DN + + FQCGH +C CS L CP C+ I R ++F Sbjct: 907 CPICIDNHIKLVFQCGHGSCTECSTSLTACPICRQLIRERIQIF 950
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: coa7 (cytochrome c oxidase assembly factor 7 (putative) [Source:Xenbase;Acc:XB-GENE-6258829]) HSP 1 Score: 50.0618 bits (118), Expect = 2.096e-7 Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 1 Query: 190 CNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 C IC DN + + FQCGH +C CS L CP C+ I R ++F Sbjct: 904 CPICIDNHIKLVFQCGHGSCTECSTSLTACPICRQLIRERIQIF 947
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: coa7 (cytochrome c oxidase assembly factor 7 (putative) [Source:Xenbase;Acc:XB-GENE-6258829]) HSP 1 Score: 50.0618 bits (118), Expect = 2.223e-7 Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 1 Query: 190 CNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 C IC DN + + FQCGH +C CS L CP C+ I R ++F Sbjct: 917 CPICIDNHIKLVFQCGHGSCTECSTSLTACPICRQLIRERIQIF 960
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Rnf123 (ring finger protein 123 [Source:MGI Symbol;Acc:MGI:2148796]) HSP 1 Score: 49.6766 bits (117), Expect = 2.366e-7 Identity = 24/51 (47.06%), Postives = 30/51 (58.82%), Query Frame = 1 Query: 169 PDNEIPMCNICQDNPVSIGFQ-CGHLTCNVCSNQLF----ECPYCKAGIVS 306 P NE +C IC +P+S FQ CGH +C C NQ +C +CKA IVS Sbjct: 1247 PTNEEDLCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVS 1297
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Rnf123 (ring finger protein 123 [Source:MGI Symbol;Acc:MGI:2148796]) HSP 1 Score: 49.6766 bits (117), Expect = 2.366e-7 Identity = 24/51 (47.06%), Postives = 30/51 (58.82%), Query Frame = 1 Query: 169 PDNEIPMCNICQDNPVSIGFQ-CGHLTCNVCSNQLF----ECPYCKAGIVS 306 P NE +C IC +P+S FQ CGH +C C NQ +C +CKA IVS Sbjct: 1247 PTNEEDLCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVS 1297
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Rnf123 (ring finger protein 123 [Source:MGI Symbol;Acc:MGI:2148796]) HSP 1 Score: 49.6766 bits (117), Expect = 2.366e-7 Identity = 24/51 (47.06%), Postives = 30/51 (58.82%), Query Frame = 1 Query: 169 PDNEIPMCNICQDNPVSIGFQ-CGHLTCNVCSNQLF----ECPYCKAGIVS 306 P NE +C IC +P+S FQ CGH +C C NQ +C +CKA IVS Sbjct: 1253 PTNEEDLCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVS 1303
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Rnf123 (ring finger protein 123 [Source:MGI Symbol;Acc:MGI:2148796]) HSP 1 Score: 49.6766 bits (117), Expect = 2.366e-7 Identity = 24/51 (47.06%), Postives = 30/51 (58.82%), Query Frame = 1 Query: 169 PDNEIPMCNICQDNPVSIGFQ-CGHLTCNVCSNQLF----ECPYCKAGIVS 306 P NE +C IC +P+S FQ CGH +C C NQ +C +CKA IVS Sbjct: 1253 PTNEEDLCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVS 1303
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Mib1 (mindbomb E3 ubiquitin protein ligase 1 [Source:MGI Symbol;Acc:MGI:2443157]) HSP 1 Score: 48.521 bits (114), Expect = 4.824e-7 Identity = 20/61 (32.79%), Postives = 35/61 (57.38%), Query Frame = 1 Query: 139 NVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 +V+ +++ Q E MC +C D ++ F CGH TC +C +++ ECP C+ I R ++ Sbjct: 946 DVQKLQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY 1006
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8RX26|RGLG3_ARATH (E3 ubiquitin-protein ligase RGLG3 OS=Arabidopsis thaliana OX=3702 GN=RGLG3 PE=1 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 1.460e-7 Identity = 25/109 (22.94%), Postives = 52/109 (47.71%), Query Frame = 1 Query: 1 MKFILAIKTIISLGGNIYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPSREENQ--PDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 M+ K +SL + + + + + ++++++ R N + + E++ + +P+C IC NP + F CGH TC C + CP C+ I +R +++ Sbjct: 258 MEIPFQYKATLSLNRKPVRSSHQHHKPLPPPPEVIERDNAVRSVPNQMTETAEKSDRLAPSTVPVCPICLTNPKDMAFSCGHTTCKECGVVITTCPLCRQPITTRIRLY 366
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9VUX2|MIB_DROME (E3 ubiquitin-protein ligase mind-bomb OS=Drosophila melanogaster OX=7227 GN=mib1 PE=1 SV=3) HSP 1 Score: 51.6026 bits (122), Expect = 2.998e-7 Identity = 22/74 (29.73%), Postives = 39/74 (52.70%), Query Frame = 1 Query: 100 IVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 +V + F ++V+ +++ Q E MC +C D ++ F CGH TC +C +Q+ CP C+ + R +F Sbjct: 1153 MVAPSNVNNFQMDDVQKLKQQLQDIKEQTMCPVCFDRIKNMVFLCGHGTCQMCGDQIEGCPICRKTVEKRILLF 1226
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5XPI3|RN123_MOUSE (E3 ubiquitin-protein ligase RNF123 OS=Mus musculus OX=10090 GN=Rnf123 PE=1 SV=1) HSP 1 Score: 49.6766 bits (117), Expect = 1.655e-6 Identity = 24/51 (47.06%), Postives = 30/51 (58.82%), Query Frame = 1 Query: 169 PDNEIPMCNICQDNPVSIGFQ-CGHLTCNVCSNQLF----ECPYCKAGIVS 306 P NE +C IC +P+S FQ CGH +C C NQ +C +CKA IVS Sbjct: 1247 PTNEEDLCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVS 1297
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|D3ZXK7|RN123_RAT (E3 ubiquitin-protein ligase RNF123 OS=Rattus norvegicus OX=10116 GN=Rnf123 PE=1 SV=1) HSP 1 Score: 49.6766 bits (117), Expect = 1.655e-6 Identity = 24/51 (47.06%), Postives = 30/51 (58.82%), Query Frame = 1 Query: 169 PDNEIPMCNICQDNPVSIGFQ-CGHLTCNVCSNQLF----ECPYCKAGIVS 306 P NE +C IC +P+S FQ CGH +C C NQ +C +CKA IVS Sbjct: 1251 PTNEEDLCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVS 1301
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q804S5|MIB1_DANRE (E3 ubiquitin-protein ligase mib1 OS=Danio rerio OX=7955 GN=mib1 PE=1 SV=1) HSP 1 Score: 49.2914 bits (116), Expect = 1.707e-6 Identity = 20/61 (32.79%), Postives = 35/61 (57.38%), Query Frame = 1 Query: 139 NVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 +V+ +++ Q E MC +C D ++ F CGH TC +C +++ ECP C+ I R ++ Sbjct: 970 DVQKLQQQLQDIKEQTMCPVCLDRLKNMIFMCGHGTCQLCGDRMSECPICRKAIERRILLY 1030
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: A0A250WVA8 (RING-type domain-containing protein OS=Chlamydomonas eustigma OX=1157962 GN=CEUSTIGMA_g2002.t1 PE=4 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 3.121e-7 Identity = 22/54 (40.74%), Postives = 31/54 (57.41%), Query Frame = 1 Query: 169 PDNEI---PMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 PD+ + P C+IC + P S+ F CGH C C L CP+C+ I ++ KMF Sbjct: 805 PDSSVVSTPQCSICMERPRSLVFSCGHQCCFKCGEPLLTCPFCRMAITTKIKMF 858
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: A8HPA3 (Predicted protein OS=Chlamydomonas reinhardtii OX=3055 GN=CHLREDRAFT_146196 PE=4 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 4.225e-7 Identity = 23/83 (27.71%), Postives = 44/83 (53.01%), Query Frame = 1 Query: 73 QRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 +R ++A + V I+R K + + ++E C +C + P ++ F CGH +C CS ++ CP+C+ I +R ++F Sbjct: 731 ERKLEASSRSVRDALIQR------KIDEAQRRSNSEQAACAVCMEGPKAVVFNCGHQSCEACSGKMSSCPFCRVAITARIRLF 807
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: A0A2K3E5F7 (RING-type domain-containing protein OS=Chlamydomonas reinhardtii OX=3055 GN=CHLRE_01g011600v5 PE=4 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 4.302e-7 Identity = 23/83 (27.71%), Postives = 44/83 (53.01%), Query Frame = 1 Query: 73 QRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 +R ++A + V I+R K + + ++E C +C + P ++ F CGH +C CS ++ CP+C+ I +R ++F Sbjct: 901 ERKLEASSRSVRDALIQR------KIDEAQRRSNSEQAACAVCMEGPKAVVFNCGHQSCEACSGKMSSCPFCRVAITARIRLF 977
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: U5GEJ4 (RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G065700 PE=4 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 6.391e-7 Identity = 23/64 (35.94%), Postives = 33/64 (51.56%), Query Frame = 1 Query: 130 HRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 H N KP + + P+C IC NP + F CGH+TC C + CP C+ I +R ++F Sbjct: 350 HMTNFKPVQPTAPTASVEPVCPICLANPKDLAFGCGHMTCRDCGASISACPLCRQPITTRLRLF 413
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: A0A2K3NFK1 (E3 ubiquitin-protein ligase rglg1-like protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g025116 PE=4 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 8.456e-7 Identity = 23/56 (41.07%), Postives = 30/56 (53.57%), Query Frame = 1 Query: 151 SREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKM 318 S E P +E P+C IC NP + F CGH TC C L CP C+ I +R ++ Sbjct: 375 STEPTAPASEEPVCPICLTNPKDMAFGCGHTTCKECGATLSSCPMCRQQITTRLRL 430
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Match: mib2 (mindbomb E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:103034310]) HSP 1 Score: 50.0618 bits (118), Expect = 1.018e-7 Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 1 Query: 190 CNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 C IC DN + + FQCGH +C CS L CP C+ I R ++F Sbjct: 903 CPICIDNQIKLVFQCGHASCIDCSAALKTCPICRQTIRERIQLF 946
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Match: mib2 (mindbomb E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:103034310]) HSP 1 Score: 50.0618 bits (118), Expect = 1.024e-7 Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 1 Query: 190 CNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 C IC DN + + FQCGH +C CS L CP C+ I R ++F Sbjct: 967 CPICIDNQIKLVFQCGHASCIDCSAALKTCPICRQTIRERIQLF 1010
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Match: mib2 (mindbomb E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:103034310]) HSP 1 Score: 50.0618 bits (118), Expect = 1.024e-7 Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 1 Query: 190 CNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 C IC DN + + FQCGH +C CS L CP C+ I R ++F Sbjct: 973 CPICIDNQIKLVFQCGHASCIDCSAALKTCPICRQTIRERIQLF 1016
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Match: mib1 (mindbomb E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:352910]) HSP 1 Score: 49.2914 bits (116), Expect = 1.898e-7 Identity = 20/61 (32.79%), Postives = 35/61 (57.38%), Query Frame = 1 Query: 139 NVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 +V+ +++ Q E MC +C D ++ F CGH TC +C +++ ECP C+ I R ++ Sbjct: 967 DVQKLQQQLQDIKEQTMCPVCLDRLKNMIFMCGHGTCQLCGDRMSECPICRKAIERRILLY 1027
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Match: mib1 (mindbomb E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:352910]) HSP 1 Score: 49.2914 bits (116), Expect = 2.106e-7 Identity = 20/61 (32.79%), Postives = 35/61 (57.38%), Query Frame = 1 Query: 139 NVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 +V+ +++ Q E MC +C D ++ F CGH TC +C +++ ECP C+ I R ++ Sbjct: 946 DVQKLQQQLQDIKEQTMCPVCLDRLKNMIFMCGHGTCQLCGDRMSECPICRKAIERRILLY 1006
BLAST of RING-type domain-containing protein vs. Ensembl Sea Lamprey
Match: birc2 (baculoviral IAP repeat containing 2 [Source:ZFIN;Acc:ZDB-GENE-030825-6]) HSP 1 Score: 44.669 bits (104), Expect = 1.932e-6 Identity = 23/62 (37.10%), Postives = 32/62 (51.61%), Query Frame = 1 Query: 148 PSREENQPDNEIPMCNICQDNPVSIGF-QCGHLT-CNVCSNQLFECPYCKAGIVSRTKMFFS 327 P EE + E C +C D VS+ F CGHL C C++ L +CP C+A + + F S Sbjct: 515 PPEEELKRLQEQHTCKVCMDKEVSVVFIPCGHLVVCRDCASSLRKCPICRAVVRGTVRTFMS 576
BLAST of RING-type domain-containing protein vs. Ensembl Nematostella
Match: EDO37483 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SFK6]) HSP 1 Score: 43.1282 bits (100), Expect = 5.297e-6 Identity = 20/63 (31.75%), Postives = 32/63 (50.79%), Query Frame = 1 Query: 133 RNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 N++ + + Q + C IC D P ++ F CGH TC+ C L CP+C+ I + +F Sbjct: 123 ENSLTSLQAKLQELEDKSQCPICMDKPRTVAFLCGHGTCSECCQSLRNCPFCRKPIEKKINLF 185
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Match: mib2 (mindbomb E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:101175479]) HSP 1 Score: 50.447 bits (119), Expect = 9.844e-8 Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 1 Query: 190 CNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 C IC DN + + FQCGH +C CS L CP C+ I R ++F Sbjct: 1040 CPICIDNHIKLVFQCGHASCIECSAALKTCPICRQTIRERIQLF 1083
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Match: mib2 (mindbomb E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:101175479]) HSP 1 Score: 50.0618 bits (118), Expect = 1.079e-7 Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 1 Query: 190 CNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 C IC DN + + FQCGH +C CS L CP C+ I R ++F Sbjct: 984 CPICIDNHIKLVFQCGHASCIECSAALKTCPICRQTIRERIQLF 1027
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Match: mib1 (mindbomb E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:101158637]) HSP 1 Score: 49.2914 bits (116), Expect = 2.096e-7 Identity = 20/61 (32.79%), Postives = 35/61 (57.38%), Query Frame = 1 Query: 139 NVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMF 321 +V+ +++ Q E MC +C D ++ F CGH TC +C +++ ECP C+ I R ++ Sbjct: 960 DVQKLQQQLQDIKEQTMCPVCLDRLKNMIFMCGHGTCQLCGDRMSECPICRKAIERRILLY 1020
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000043474.1 (SMESG000043474.1) HSP 1 Score: 219.55 bits (558), Expect = 2.925e-68 Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 1 Query: 4 KFILAIKTIISLGGNIYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMFFS 327 K + IK IISLGG+IYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMFFS Sbjct: 656 KLVSTIKIIISLGGDIYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMFFS 763
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000043474.1 (SMESG000043474.1) HSP 1 Score: 219.55 bits (558), Expect = 5.012e-68 Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 1 Query: 4 KFILAIKTIISLGGNIYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMFFS 327 K + IK IISLGG+IYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMFFS Sbjct: 718 KLVSTIKIIISLGGDIYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMFFS 825
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000043474.1 (SMESG000043474.1) HSP 1 Score: 219.55 bits (558), Expect = 5.828e-68 Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 1 Query: 4 KFILAIKTIISLGGNIYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMFFS 327 K + IK IISLGG+IYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMFFS Sbjct: 714 KLVSTIKIIISLGGDIYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMFFS 821
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000043474.1 (SMESG000043474.1) HSP 1 Score: 219.55 bits (558), Expect = 6.716e-68 Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 1 Query: 4 KFILAIKTIISLGGNIYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMFFS 327 K + IK IISLGG+IYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMFFS Sbjct: 725 KLVSTIKIIISLGGDIYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMFFS 832
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000043474.1 (SMESG000043474.1) HSP 1 Score: 219.164 bits (557), Expect = 2.089e-67 Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 1 Query: 4 KFILAIKTIISLGGNIYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMFFS 327 K + IK IISLGG+IYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMFFS Sbjct: 814 KLVSTIKIIISLGGDIYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPSREENQPDNEIPMCNICQDNPVSIGFQCGHLTCNVCSNQLFECPYCKAGIVSRTKMFFS 921 The following BLAST results are available for this feature:
BLAST of RING-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 4
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of RING-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of RING-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of RING-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 3
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30035805 ID=SMED30035805|Name=RING-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=411bpback to top protein sequence of SMED30035805-orf-1 >SMED30035805-orf-1 ID=SMED30035805-orf-1|Name=SMED30035805-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=110bp MKFILAIKTIISLGGNIYKMTSRGQRIIDACADIVDKEEIERFHRNNVKPback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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