Nucleoporin NUP53-like
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30035756 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of Nucleoporin NUP53-like vs. Ensembl Human
Match: NUP35 (nucleoporin 35 [Source:HGNC Symbol;Acc:HGNC:29797]) HSP 1 Score: 97.0561 bits (240), Expect = 3.018e-22 Identity = 40/91 (43.96%), Postives = 64/91 (70.33%), Query Frame = 1 Query: 496 NSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 + F + + T ++ ++WVTVFG+ + A Y+L F++ G+I++ +SN+GNWMHI+Y+SK+ A AL+++GRI + MIGVKPC DK Sbjct: 139 DPFYTQGDSLTSEDHLDDSWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDK 229
BLAST of Nucleoporin NUP53-like vs. Ensembl Human
Match: NUP35 (nucleoporin 35 [Source:HGNC Symbol;Acc:HGNC:29797]) HSP 1 Score: 97.0561 bits (240), Expect = 4.081e-22 Identity = 40/91 (43.96%), Postives = 64/91 (70.33%), Query Frame = 1 Query: 496 NSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 + F + + T ++ ++WVTVFG+ + A Y+L F++ G+I++ +SN+GNWMHI+Y+SK+ A AL+++GRI + MIGVKPC DK Sbjct: 156 DPFYTQGDSLTSEDHLDDSWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDK 246
BLAST of Nucleoporin NUP53-like vs. Ensembl Celegans
Match: npp-19 (Nucleoporin NUP35 [Source:UniProtKB/Swiss-Prot;Acc:Q09601]) HSP 1 Score: 73.9442 bits (180), Expect = 2.217e-14 Identity = 32/81 (39.51%), Postives = 52/81 (64.20%), Query Frame = 1 Query: 547 ENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDKVTDVPSG 789 + WVTVFG+ PS+ +L+ FS G ++ + + GN++H++Y HA A++RNG +L+ +T IGV C +K DV +G Sbjct: 198 DTWVTVFGFQPSQVSILLNLFSRHGEVVSHQTPSKGNFIHMRYSCVTHAQQAISRNGTLLDQDTFIGVVQCTNK--DVING 276
BLAST of Nucleoporin NUP53-like vs. Ensembl Celegans
Match: npp-19 (Nucleoporin NUP35 [Source:UniProtKB/Swiss-Prot;Acc:Q09601]) HSP 1 Score: 73.9442 bits (180), Expect = 2.609e-14 Identity = 32/81 (39.51%), Postives = 52/81 (64.20%), Query Frame = 1 Query: 547 ENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDKVTDVPSG 789 + WVTVFG+ PS+ +L+ FS G ++ + + GN++H++Y HA A++RNG +L+ +T IGV C +K DV +G Sbjct: 198 DTWVTVFGFQPSQVSILLNLFSRHGEVVSHQTPSKGNFIHMRYSCVTHAQQAISRNGTLLDQDTFIGVVQCTNK--DVING 276
BLAST of Nucleoporin NUP53-like vs. Ensembl Fly
Match: Nup35 (gene:FBgn0030943 transcript:FBtr0074601) HSP 1 Score: 69.707 bits (169), Expect = 5.612e-13 Identity = 45/167 (26.95%), Postives = 75/167 (44.91%), Query Frame = 1 Query: 553 WVTVFGYAPSEARYVLSYFSEIGSIIEQ-KISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK-------VTDVPSGNRFKERSIIGQSIDSPNSSRLLEEPLPVNGSSSILTTDKFNCSMLNLSMRSLSQSNFPSPVKTEERPKGGLLSRAMSMVF 1029 WVT+FG+ P VL +F+ G+I++ +GNWM+++Y S++ + ALN N +I+ N M+GV C D+ + VP+ IG SP++ R + S + + N SP K + GL+ +AM ++F Sbjct: 192 WVTIFGFPPGAGSMVLQHFTVCGTIVDVVHAPQNGNWMYVRYSSRIESDKALNYNEKIIAGNVMVGVSRCTDRSVIDKENIGSVPNAE-------IGDPPTSPSAIRPFSQ----------------------QSYKLARKDNIISPQKDVPQKSSGLMDKAMDLIF 329
BLAST of Nucleoporin NUP53-like vs. Ensembl Zebrafish
Match: nup35 (nucleoporin 35 [Source:NCBI gene;Acc:337461]) HSP 1 Score: 99.7525 bits (247), Expect = 1.724e-23 Identity = 39/80 (48.75%), Postives = 61/80 (76.25%), Query Frame = 1 Query: 532 SENEFEN-WVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 SE++ ++ W+TVFG+ P+ A Y+L F++ G+I++ +SN+GNWMH+QY+SK+ A AL+++G+I MIGVKPC DK Sbjct: 143 SEDQLDDTWITVFGFPPASASYILLQFAQYGNILKHVMSNTGNWMHVQYQSKLQARKALSKDGKIFGEAIMIGVKPCIDK 222
BLAST of Nucleoporin NUP53-like vs. Ensembl Zebrafish
Match: nup35 (nucleoporin 35 [Source:NCBI gene;Acc:337461]) HSP 1 Score: 99.7525 bits (247), Expect = 2.417e-23 Identity = 39/80 (48.75%), Postives = 61/80 (76.25%), Query Frame = 1 Query: 532 SENEFEN-WVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 SE++ ++ W+TVFG+ P+ A Y+L F++ G+I++ +SN+GNWMH+QY+SK+ A AL+++G+I MIGVKPC DK Sbjct: 152 SEDQLDDTWITVFGFPPASASYILLQFAQYGNILKHVMSNTGNWMHVQYQSKLQARKALSKDGKIFGEAIMIGVKPCIDK 231
BLAST of Nucleoporin NUP53-like vs. Ensembl Zebrafish
Match: nup35 (nucleoporin 35 [Source:NCBI gene;Acc:337461]) HSP 1 Score: 81.2629 bits (199), Expect = 1.966e-17 Identity = 31/71 (43.66%), Postives = 53/71 (74.65%), Query Frame = 1 Query: 532 SENEFEN-WVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTM 741 SE++ ++ W+TVFG+ P+ A Y+L F++ G+I++ +SN+GNWMH+QY+SK+ A AL+++G+I M Sbjct: 157 SEDQLDDTWITVFGFPPASASYILLQFAQYGNILKHVMSNTGNWMHVQYQSKLQARKALSKDGKIFGEAIM 227
BLAST of Nucleoporin NUP53-like vs. Ensembl Zebrafish
Match: nup35 (nucleoporin 35 [Source:NCBI gene;Acc:337461]) HSP 1 Score: 65.4698 bits (158), Expect = 7.986e-12 Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 1 Query: 532 SENEFEN-WVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 SE++ ++ W+TVFG+ P+ A Y+L F++ G+I++ H+ SK+ A AL+++G+I MIGVKPC DK Sbjct: 152 SEDQLDDTWITVFGFPPASASYILLQFAQYGNILK----------HV---SKLQARKALSKDGKIFGEAIMIGVKPCIDK 218
BLAST of Nucleoporin NUP53-like vs. Ensembl Xenopus
Match: fshb (follicle stimulating hormone subunit beta [Source:Xenbase;Acc:XB-GENE-484695]) HSP 1 Score: 98.9821 bits (245), Expect = 7.196e-23 Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 1 Query: 496 NSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 + F + + T + + WVTVFG+ + A Y+L F++ G+II+ +SN+GNWMHIQY+SK+ A AL+++GRI + MIGVKPC DK Sbjct: 144 DPFYTQGDALTSDDQLDDTWVTVFGFPQASASYILLQFAQYGNIIKHVMSNNGNWMHIQYQSKLQARKALSKDGRIFGESIMIGVKPCIDK 234
BLAST of Nucleoporin NUP53-like vs. Ensembl Xenopus
Match: fshb (follicle stimulating hormone subunit beta [Source:Xenbase;Acc:XB-GENE-484695]) HSP 1 Score: 98.9821 bits (245), Expect = 7.503e-23 Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 1 Query: 496 NSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 + F + + T + + WVTVFG+ + A Y+L F++ G+II+ +SN+GNWMHIQY+SK+ A AL+++GRI + MIGVKPC DK Sbjct: 150 DPFYTQGDALTSDDQLDDTWVTVFGFPQASASYILLQFAQYGNIIKHVMSNNGNWMHIQYQSKLQARKALSKDGRIFGESIMIGVKPCIDK 240
BLAST of Nucleoporin NUP53-like vs. Ensembl Xenopus
Match: fshb (follicle stimulating hormone subunit beta [Source:Xenbase;Acc:XB-GENE-484695]) HSP 1 Score: 98.9821 bits (245), Expect = 7.803e-23 Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 1 Query: 496 NSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 + F + + T + + WVTVFG+ + A Y+L F++ G+II+ +SN+GNWMHIQY+SK+ A AL+++GRI + MIGVKPC DK Sbjct: 148 DPFYTQGDALTSDDQLDDTWVTVFGFPQASASYILLQFAQYGNIIKHVMSNNGNWMHIQYQSKLQARKALSKDGRIFGESIMIGVKPCIDK 238
BLAST of Nucleoporin NUP53-like vs. Ensembl Xenopus
Match: fshb (follicle stimulating hormone subunit beta [Source:Xenbase;Acc:XB-GENE-484695]) HSP 1 Score: 98.5969 bits (244), Expect = 8.922e-23 Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 1 Query: 496 NSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 + F + + T + + WVTVFG+ + A Y+L F++ G+II+ +SN+GNWMHIQY+SK+ A AL+++GRI + MIGVKPC DK Sbjct: 155 DPFYTQGDALTSDDQLDDTWVTVFGFPQASASYILLQFAQYGNIIKHVMSNNGNWMHIQYQSKLQARKALSKDGRIFGESIMIGVKPCIDK 245
BLAST of Nucleoporin NUP53-like vs. Ensembl Xenopus
Match: fshb (follicle stimulating hormone subunit beta [Source:Xenbase;Acc:XB-GENE-484695]) HSP 1 Score: 98.9821 bits (245), Expect = 9.402e-23 Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 1 Query: 496 NSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 + F + + T + + WVTVFG+ + A Y+L F++ G+II+ +SN+GNWMHIQY+SK+ A AL+++GRI + MIGVKPC DK Sbjct: 160 DPFYTQGDALTSDDQLDDTWVTVFGFPQASASYILLQFAQYGNIIKHVMSNNGNWMHIQYQSKLQARKALSKDGRIFGESIMIGVKPCIDK 250
BLAST of Nucleoporin NUP53-like vs. Ensembl Mouse
Match: Nup35 (nucleoporin 35 [Source:MGI Symbol;Acc:MGI:1916732]) HSP 1 Score: 97.0561 bits (240), Expect = 2.708e-22 Identity = 40/91 (43.96%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 496 NSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 + F + + T ++ + WVTVFG+ + A Y+L F++ G+I++ +SN+GNWMHI+Y+SK+ A AL+++GRI + MIGVKPC DK Sbjct: 155 DPFYTQGDSLTSEDHLDDTWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDK 245
BLAST of Nucleoporin NUP53-like vs. UniProt/SwissProt
Match: sp|Q6P6X9|NUP35_DANRE (Nucleoporin NUP35 OS=Danio rerio OX=7955 GN=nup35 PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.825e-22 Identity = 39/80 (48.75%), Postives = 61/80 (76.25%), Query Frame = 1 Query: 532 SENEFEN-WVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 SE++ ++ W+TVFG+ P+ A Y+L F++ G+I++ +SN+GNWMH+QY+SK+ A AL+++G+I MIGVKPC DK Sbjct: 152 SEDQLDDTWITVFGFPPASASYILLQFAQYGNILKHVMSNTGNWMHVQYQSKLQARKALSKDGKIFGEAIMIGVKPCIDK 231
BLAST of Nucleoporin NUP53-like vs. UniProt/SwissProt
Match: sp|Q66IJ0|NUP35_XENTR (Nucleoporin NUP35 OS=Xenopus tropicalis OX=8364 GN=nup35 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 5.008e-22 Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 1 Query: 496 NSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 + F + + T + + WVTVFG+ + A Y+L F++ G+II+ +SN+GNWMHIQY+SK+ A AL+++GRI + MIGVKPC DK Sbjct: 159 DPFYTQGDALTSDDQLDDTWVTVFGFPQASASYILLQFAQYGNIIKHVMSNNGNWMHIQYQSKLQARKALSKDGRIFGESIMIGVKPCIDK 249
BLAST of Nucleoporin NUP53-like vs. UniProt/SwissProt
Match: sp|Q8R4R6|NUP35_MOUSE (Nucleoporin NUP35 OS=Mus musculus OX=10090 GN=Nup35 PE=1 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 1.894e-21 Identity = 40/91 (43.96%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 496 NSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 + F + + T ++ + WVTVFG+ + A Y+L F++ G+I++ +SN+GNWMHI+Y+SK+ A AL+++GRI + MIGVKPC DK Sbjct: 155 DPFYTQGDSLTSEDHLDDTWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDK 245
BLAST of Nucleoporin NUP53-like vs. UniProt/SwissProt
Match: sp|Q8NFH5|NUP35_HUMAN (Nucleoporin NUP35 OS=Homo sapiens OX=9606 GN=NUP35 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.960e-21 Identity = 40/91 (43.96%), Postives = 64/91 (70.33%), Query Frame = 1 Query: 496 NSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 + F + + T ++ ++WVTVFG+ + A Y+L F++ G+I++ +SN+GNWMHI+Y+SK+ A AL+++GRI + MIGVKPC DK Sbjct: 156 DPFYTQGDSLTSEDHLDDSWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDK 246
BLAST of Nucleoporin NUP53-like vs. UniProt/SwissProt
Match: sp|Q68FY1|NUP35_RAT (Nucleoporin NUP35 OS=Rattus norvegicus OX=10116 GN=Nup35 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.307e-21 Identity = 40/91 (43.96%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 496 NSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 + F + + T ++ + WVTVFG+ + A Y+L F++ G+I++ +SN+GNWMHI+Y+SK+ A AL+++GRI + MIGVKPC DK Sbjct: 155 DPFYTQGDSLTSEDHLDDTWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDK 245
BLAST of Nucleoporin NUP53-like vs. TrEMBL
Match: T1J9E2 (Nucleoporin NUP53 OS=Strigamia maritima OX=126957 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.655e-23 Identity = 70/224 (31.25%), Postives = 115/224 (51.34%), Query Frame = 1 Query: 283 TSRNVGPPI-------------TTLRNKSPKNPYIKNVDLANDTSFYGNSYATPGKLNQSVRSVKPFESSKKLLNSTLKDSDSYNSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDKVTDVPSGNRFKERSIIGQSIDSPNSSRLLEEPLPVNGSSSILTTDKFNC 915 T +N GPPI T+L S P KN ++SFY ++ TP K++ V P +S S + + F + + T ++ E WVT+FG+ P+ + Y+L F G+I+E ++ SGNWMH++Y++K+ A AL++NG++ N M+GVKPC DK V ++ + ++SPN+SR+L+ NG+ S + F+ Sbjct: 110 TDKNGGPPIQGLFEYSTPTSARTSLVGGSVSPPQFKN-----NSSFYVSTTTTPAKVDTMVGHEHPGKSF-----SYAQSPAQIDPFYTQGQCLTSNDQLDETWVTIFGFPPAASSYILQQFYHYGTIVEHRLPPSGNWMHVRYQTKLQAKIALSKNGKVFG-NYMVGVKPCIDKSIIVQYVSKMPTK-----EMESPNASRILQ-----NGNQSPFASADFSV 312
BLAST of Nucleoporin NUP53-like vs. TrEMBL
Match: A0A5K3EK65 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.019e-22 Identity = 105/363 (28.93%), Postives = 157/363 (43.25%), Query Frame = 1 Query: 97 AMDVSCSPQ-------SGFMPNFLIGNNNHNDSFYSNQSKVQPSMHNFISFEKKTPRSSSLKRRESYNETSRNVGPPITTL-----RNKSPKNPYIKNVDLANDTSFYGNSYAT----PGKLNQSVRSVKPFESSKKLLNSTLKDSDSYNSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVK---------------PCDDKVTDVPSGNRFKERSIIGQSIDSPNSSR-----LLEEPLPVNGSSSILTTDKFNCSMLNL----SMRSLSQSNFPSP------------VKTEERPKGGLLSRAMSMVF 1029 AM V PQ S F+P FL+G+ F+S PS S K+P S + + Y + + P+ TL R+ SP + + G+S ++ P K + SV P + K ++ ++ S LV+N+ + ++E W+TVFGY P++A VL FS G+I + I+N GNWMHI+Y +K+HA ALN+NGR+ N MIGV+ PC+ DV S FK + +S+ R ++ PL +N S S T C L SMR L+ + P P + + GL S+A+ VF Sbjct: 25 AMTVGSPPQQSNTPSGSKFLPGFLMGD------FHST-----PSERFHASSFTKSPPCSPVPQHPRYLQARLSGLKPVPTLDRSSRRHASPPTQGLWSAASQKKLVELGDSQSSVEPMPTKSPKPTSSVYPRFGTPK--TASPFENTSSKEGLVENDWSFLPDDESATWITVFGYNPAQASSVLQQFSHFGTIQKYLITNEGNWMHIKYANKIHAKCALNKNGRVFPGNIMIGVRRCTDTEVMRSAAAVAPCNSNPIDVSSHEIFKSPAPKFESLAPTAEPRSKTATAVDSPLQLNHSFSDATKQNSVCPNPGLSRHSSMRPLAAAYQPPPRVQVSRTNQAQSFRVKPSKPAGLFSKALDYVF 374
BLAST of Nucleoporin NUP53-like vs. TrEMBL
Match: A0A5N5ST42 (Nucleoporin NUP53 OS=Armadillidium nasatum OX=96803 GN=nup35 PE=4 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.153e-22 Identity = 71/234 (30.34%), Postives = 121/234 (51.71%), Query Frame = 1 Query: 130 FMPNFLIGNNNHNDSFYSNQSKVQPSMHNF---ISFEKKTPRSSSLKRRESYNETSR-----NVGPPITTLRNKSPKNPYIKN-----VD----LANDTSFYGN----SYATPGKLNQ-SVRSVKPFESSKKLLNSTLKDSDSYNSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDD 765 F P++L+G + S + P H S +P S L RES+ ++R GPPI +L P++P K+ +D +A TS+ N +++TP +Q S+++ P+ ++ + ++ +V+ SE + WVTV+G+ + A Y+L+ F+++G+II+Q+ GNWMH++Y++K+ A AL +NG+I N N MIGV PC D Sbjct: 42 FYPSYLMGETQTSLSTRMPPGSISPGRHARQFSASAGLSSPSSPQLGGRESFFSSTRIGGERQGGPPIVSLMGGLPQSPVTKHHSMPIIDHQKIIATPTSYMLNQNPTAFSTPVNTSQTSMQNFTPYTPTRDNVIGMCSET------IVQG-----SEPLEDTWVTVYGFPVASASYILTQFAQLGTIIDQRQPGLGNWMHLKYQTKLQARKALTKNGKIFNGNIMIGVVPCTD 264
BLAST of Nucleoporin NUP53-like vs. TrEMBL
Match: A0A2P2I3Y0 (Nucleoporin NUP53-like (Fragment) OS=Hirondellea gigas OX=1518452 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 3.646e-22 Identity = 58/169 (34.32%), Postives = 94/169 (55.62%), Query Frame = 1 Query: 547 ENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDKVTDVPSGNRFKERSIIGQSIDSPNSSRLLEEPLPVNG-SSSILTTDKFNCSMLNLSMRSLSQSNFPSPVKTEERPK-------GGLLSRAMSMVF 1029 + WVTVFG+ + A Y+L+ F+++G+I +Q++ SGNWMH++Y++ + A AL NG+I + N MIGV PC+D+ + N+ +R NSS ++ P G +S ILT D S +RSL+Q+ +PV+ + P G +S+AM + Sbjct: 207 DEWVTVFGFPVASASYILTQFAQLGTIADQRLPGSGNWMHLKYQTSLQARKALALNGKIFSANIMIGVVPCNDRSVVMADANKENQRMFA-------NSSIIMS---PAAGNASGILTGDAAALSTPKSGIRSLTQTYQTTPVENQVVPSTNTPKKNDGFMSKAMQHIL 365
BLAST of Nucleoporin NUP53-like vs. TrEMBL
Match: A0A068YEE9 (Nucleoporin nup53 OS=Echinococcus multilocularis OX=6211 GN=EmuJ_001064600 PE=4 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 4.162e-22 Identity = 76/233 (32.62%), Postives = 123/233 (52.79%), Query Frame = 1 Query: 115 SPQSGFMPNFLIGN------NNHNDS-FYSNQSKVQPSMHNFISFEKKTPRSSSLKRRESYNETSR-NVGPPITTLRNKSPKNPYI--KNVDLANDTSFYGNSYATPGK------LNQSVRSVKPFESSKKLLNSTLKDSDSYNSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDD 765 SPQ ++P FL+G+ N H S + +Q + S H ++ PR S LK S ++R + PP +L + + + + NV A++++ S +P + + R PF+S ++ STL S ++ + ++E WVTVFGY P++A YVL +F+ +G+I + I+N GNWM+I+Y +K+ A ALN+NGR+L MIGV+ CDD Sbjct: 41 SPQ--YLPGFLMGDSQSSCTNGHQVSPIFKSQPHLPTSHHTWV----VQPRLSGLKTPPSLERSARRHAAPPTQSLWSSASQKKLLNSGNVPSASESTAK-RSLLSPSQPMVIRTATDTSRFFSPFQSPSQM--STLDRSH-------RDGHPSAPDDESATWVTVFGYDPAQANYVLQHFAHLGTIEKYVIANGGNWMNIKYANKIQARCALNKNGRVLAGKFMIGVRRCDD 257
BLAST of Nucleoporin NUP53-like vs. Ensembl Cavefish
Match: nup35 (nucleoporin 35 [Source:NCBI gene;Acc:103032603]) HSP 1 Score: 101.679 bits (252), Expect = 3.683e-24 Identity = 42/80 (52.50%), Postives = 60/80 (75.00%), Query Frame = 1 Query: 532 SENEF-ENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 SE++ E WVTVFG+ P+ A Y+L F++ G+I++ +SN+GNWMHIQY+SK+ A AL+++G+I MIGVKPC DK Sbjct: 148 SEDQLDETWVTVFGFPPASASYILLQFAQYGNILKHVMSNAGNWMHIQYQSKLQARKALSKDGKIFGEAIMIGVKPCIDK 227
BLAST of Nucleoporin NUP53-like vs. Ensembl Cavefish
Match: nup35 (nucleoporin 35 [Source:NCBI gene;Acc:103032603]) HSP 1 Score: 101.679 bits (252), Expect = 4.367e-24 Identity = 42/80 (52.50%), Postives = 60/80 (75.00%), Query Frame = 1 Query: 532 SENEF-ENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 SE++ E WVTVFG+ P+ A Y+L F++ G+I++ +SN+GNWMHIQY+SK+ A AL+++G+I MIGVKPC DK Sbjct: 159 SEDQLDETWVTVFGFPPASASYILLQFAQYGNILKHVMSNAGNWMHIQYQSKLQARKALSKDGKIFGEAIMIGVKPCIDK 238
BLAST of Nucleoporin NUP53-like vs. Ensembl Sea Lamprey
Match: nup35 (nucleoporin 35 [Source:NCBI gene;Acc:337461]) HSP 1 Score: 97.0561 bits (240), Expect = 4.357e-23 Identity = 65/225 (28.89%), Postives = 108/225 (48.00%), Query Frame = 1 Query: 130 FMPNFLIGNNNHNDSFYSNQSKVQPSMHNFISFEKKTPRSSSLKRRESYNET-----SRNVGPPITTLRNKSPKNPYIK----NVDLANDTSFYGNSYATPGKLNQSVRSVKPFESSKKLLN---STLKDSDSYNSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 F+P FL+G+ + + QP H+ + + RSS R + ++ PP+ +L + +P N L + T G+ TPG ++ S F L+ +T + F + E S+ WVTVFG+ P+ A Y+L F++ G+I++ +S+SGNWMHIQY+S + A AL+++G++ M+GVKPC +K Sbjct: 30 FLPGFLLGD-------LPSPATGQPRSHHTPTTGLEL-RSSPFTGRSTPQAALPVTKDKSGAPPVRSLYDDVQPSPLQARNRMNTSL-HHTPLSGSVVRTPGSNKTALGSSSLFSPGTLPLSQPRATPPSPAQLDPFYTQGESLVSSDTLDHTWVTVFGFPPASASYILMQFAQYGNILKHVMSSSGNWMHIQYQSALQARKALSKDGKVFGECIMVGVKPCIEK 245
BLAST of Nucleoporin NUP53-like vs. Ensembl Nematostella
Match: EDO31992 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SWD1]) HSP 1 Score: 93.5893 bits (231), Expect = 3.458e-22 Identity = 64/198 (32.32%), Postives = 98/198 (49.49%), Query Frame = 1 Query: 286 SRNVGPPITTLRNKSPKNPYIKNVDLANDTSFYGNSYATPGKLNQSVRSVKPFESSKKLLNSTLKDSDSYNSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK--VTDVPSGN--RFKERSIIGQSIDSPNSSRLLEEPL 867 +R+ P ++ KNP N Y + TP + ++ SV F SK L + D F + E + + + WVTVFG+ P+ Y+L F++ G+II ++ + NWMHIQY+SK+ A AL++NG++ + N MIGV PC +K + D N R E S + S++ SRL PL Sbjct: 17 TRHASPAPVNFQSTPSKNPMAGN-------HVYASGPGTPFQDSRQDTSV--FSPSKMTLPPSPTQVDP---FYTQGESLSSDDVLSQCWVTVFGFPPAATSYILQQFAQYGNIIRHEVVANKNWMHIQYQSKLQAKKALSKNGKVYSSNIMIGVMPCIEKSLMEDCGKENTMRHMETSKMDVSVNPATPSRLPIRPL 202
BLAST of Nucleoporin NUP53-like vs. Ensembl Medaka
Match: nup35 (nucleoporin 35 [Source:NCBI gene;Acc:101158733]) HSP 1 Score: 95.1301 bits (235), Expect = 5.761e-22 Identity = 68/229 (29.69%), Postives = 113/229 (49.34%), Query Frame = 1 Query: 109 SCSPQSG--FMPNFLIGNNNHNDSFYSNQSKVQPSMHNFISFEKKTPRSSSLKRRESYNETSRNVGPP----ITTLRNKSPKNPYIKNV--DLAN-DTSFYGNSYATPGKLNQSVRSVKPFESSKKLLNSTLKDSDSYNSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 S P SG F+P FL+G+ + QP SF TP S S + ++ VG P + T ++KS P ++++ DL T + + P + QS S + + + + F + E + + + WVTVFG+ P+ A Y+L F++ G+I + K+++ GNWMH+QY+SK+ A AL+++G++ + M+GVKPC DK Sbjct: 8 SPKPTSGAQFLPGFLLGD-------LPAPASPQPR-----SFSLSTPISES---KSAHRGGPGGVGSPMQPVVPTPKDKS-GAPPVRSIHDDLVTMGTPLGAHRQSFP--VMQSPLSGRQASTPGTGMQQVCMSPAQVDPFYSQGESLSSDDQLDQTWVTVFGFPPASASYILLQFAQYGNIQKHKMASPGNWMHLQYQSKLQARKALSKDGKVFGDSIMVGVKPCIDK 218
BLAST of Nucleoporin NUP53-like vs. Ensembl Medaka
Match: nup35 (nucleoporin 35 [Source:NCBI gene;Acc:101158733]) HSP 1 Score: 95.1301 bits (235), Expect = 5.980e-22 Identity = 68/229 (29.69%), Postives = 113/229 (49.34%), Query Frame = 1 Query: 109 SCSPQSG--FMPNFLIGNNNHNDSFYSNQSKVQPSMHNFISFEKKTPRSSSLKRRESYNETSRNVGPP----ITTLRNKSPKNPYIKNV--DLAN-DTSFYGNSYATPGKLNQSVRSVKPFESSKKLLNSTLKDSDSYNSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDK 768 S P SG F+P FL+G+ + QP SF TP S S + ++ VG P + T ++KS P ++++ DL T + + P + QS S + + + + F + E + + + WVTVFG+ P+ A Y+L F++ G+I + K+++ GNWMH+QY+SK+ A AL+++G++ + M+GVKPC DK Sbjct: 17 SPKPTSGAQFLPGFLLGD-------LPAPASPQPR-----SFSLSTPISES---KSAHRGGPGGVGSPMQPVVPTPKDKS-GAPPVRSIHDDLVTMGTPLGAHRQSFP--VMQSPLSGRQASTPGTGMQQVCMSPAQVDPFYSQGESLSSDDQLDQTWVTVFGFPPASASYILLQFAQYGNIQKHKMASPGNWMHLQYQSKLQARKALSKDGKVFGDSIMVGVKPCIDK 227
BLAST of Nucleoporin NUP53-like vs. Planmine SMEST
Match: SMESG000071542.1 (SMESG000071542.1) HSP 1 Score: 634.024 bits (1634), Expect = 0.000e+0 Identity = 311/313 (99.36%), Postives = 312/313 (99.68%), Query Frame = 1 Query: 100 MDVSCSPQSGFMPNFLIGNNNHNDSFYSNQSKVQPSMHNFISFEKKTPRSSSLKRRESYNETSRNVGPPITTLRNKSPKNPYIKNVDLANDTSFYGNSYATPGKLNQSVRSVKPFESSKKLLNSTLKDSDSYNSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDKVTDVPSGNRFKERSIIGQSIDSPNSSRLLEEPLPVNGSSSILTTDKFNCSMLNLSMRSLSQSNFPSPVKTEERPKGGLLSRAMSMVFRRS 1038 MDVSCSPQSGFMPNFLIGNNNHNDSFYSNQSKVQPSMHNFISFEKKTPRSSSLKRRESY+ETSRNVGPPITTLRNKSPKNPYIKNVDLANDTSFYGNSYATPGKLNQSVRSVKPFESSKKLLNSTLKDSDSYNSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDKVTDVPSGNRFKERSIIGQSIDSPNSSRLLEEPLPV GSSSILTTDKFNCSMLNLSMRSLSQSNFPSPVKTEERPKGGLLSRAMSMVFRRS Sbjct: 1 MDVSCSPQSGFMPNFLIGNNNHNDSFYSNQSKVQPSMHNFISFEKKTPRSSSLKRRESYHETSRNVGPPITTLRNKSPKNPYIKNVDLANDTSFYGNSYATPGKLNQSVRSVKPFESSKKLLNSTLKDSDSYNSFLVKNEPTTFSENEFENWVTVFGYAPSEARYVLSYFSEIGSIIEQKISNSGNWMHIQYESKMHAVAALNRNGRILNLNTMIGVKPCDDKVTDVPSGNRFKERSIIGQSIDSPNSSRLLEEPLPVIGSSSILTTDKFNCSMLNLSMRSLSQSNFPSPVKTEERPKGGLLSRAMSMVFRRS 313 The following BLAST results are available for this feature:
BLAST of Nucleoporin NUP53-like vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of Nucleoporin NUP53-like vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of Nucleoporin NUP53-like vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of Nucleoporin NUP53-like vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 4
BLAST of Nucleoporin NUP53-like vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Nucleoporin NUP53-like vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of Nucleoporin NUP53-like vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Nucleoporin NUP53-like vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Nucleoporin NUP53-like vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of Nucleoporin NUP53-like vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Nucleoporin NUP53-like vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Nucleoporin NUP53-like vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Nucleoporin NUP53-like vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of Nucleoporin NUP53-like vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30035756 ID=SMED30035756|Name=Nucleoporin NUP53-like|organism=Schmidtea mediterranea sexual|type=transcript|length=1105bpback to top protein sequence of SMED30035756-orf-1 >SMED30035756-orf-1 ID=SMED30035756-orf-1|Name=SMED30035756-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=328bp MRKNYNIPLNDNSAMDVSCSPQSGFMPNFLIGNNNHNDSFYSNQSKVQPSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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