SMED30035644
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30035644 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Homology
BLAST of SMED30035644 vs. Planmine SMEST
Match: SMESG000014253.1 (SMESG000014253.1) HSP 1 Score: 2145.55 bits (5558), Expect = 0.000e+0 Identity = 1124/1126 (99.82%), Postives = 1125/1126 (99.91%), Query Frame = 1 Query: 541 MNWENIQILYIWYCILKLIRSEDISISPYLNAFKIYKKQSDFTLKSFAFINPAVHNFNLTTKLEDDIKDNQFIKSDFSVSIHTDKHQYYDLDKTESYTINTICKFDYIPEKIYLFRNICCRITIQDFNFTSNDFYSIKFCKFSLSRHSSACFIDLMFQKSFIPKPSSADHFYFGLRAFAVATNSDHCTSHSDDMRILAVSKLYPLSFSNGLSVFWTNIFQSNLNFSLEIGRPFYSIDPDSFVSFPIKLISDKMFSQMNLQCIISENLEIKSVFFDENIFDAQYKIAALPNRFIITILLENKGMNYLKSSQWWVDRGLLLFIMYGRITESYMLSRKNDLRTAWASCQIINLKLQGESKSVAYTSKILQTVHIAINTDKFIIIPILKTRYFFSIFNDINRPISLEDDFITLYSIHDVIDGSFVDVTNSAICNSIDKSSIICPLSMMKSSDQYFHTKFDNKSDNGRTRILPNKFDLILEMKTWKTVLFAPINLWVAQDWKLDINVKIINKINGWRVPVRSSVTREIICVTMFQRSRLKVLVRMVNRNTLGEKEFYGSTSSNGSPFLDITSQIPKNSIEFSPSSKIISYDEKFSELIVDPQSDVNDVEVRLLSVDSKRLLAIERVKIRLDKVIIANIKAFCVSSLDLFQDKSDIYSNYRRLHVEYILQNDTRKMCYLFIVVKLSDSSEIRLDEIPSNYYRAFITQYDYSSKHYIQVPFVVSRYIPYSNQLNISLYESGSCRFSKLIFTGLVRINIQHSEDIPXXXXXXXXXXXXXXXXNPSTVNTNQIQNRELIKNLSSLYYGXXXXXXXXXXXXXXXXXNCLVKFNYRKISHQSSNALNQSVNNKLLNSAQPPALADTSSPTTSFTKHXXXXXXXXXXRNASNSEVELPSSTFWSYCSSQDSSSFTNRKYSSTLLEPTISISPLNNFLIKTSPLVSSVYTNTKYRNNPSPSSDQGDGGYLSGENQSKITQIPLIKKLSDDRNANLESVDMTSSSSGGLSHYAEXXXXXXXXXXLKWSIQWATSMVSAIPVFSQSYTPNLITDSTCVISRAVPCGEPTSPINQWITNKTIPSSSSVPYTKSIDNLCEKSSGLGSLTSTQQEDYSMLSDDDNYHVSINSDKEHYRKYFKKC 3918 MNWENIQILYIWYCILKLIRSEDISISPYLNAFKIYKKQSDFTLKSFAFINPAVHNFNLTTKLEDDIKDNQFIKSDFSVSIHTDKHQYYDLDKTESYTINTICKFDYIPEKIYLFRNICCRITIQDFNFTSNDFYSIKFCKFSLSRHSSACFIDLMFQKSFIPKPSSADHFYFGLRAFAVATNSDHCTSHSDDMRILAVSKLYPLSFSNGLSVFWTNIFQSNLNFSLEIGRPFYSIDPDSFVSFPIKLISDKMFSQMNLQCIISENLEIKSVFFDENIFDAQYKIAALPNRFIITILLENKGMNYLKSSQWWVDRGLLLFIMYGRITESYMLSRKNDLRTAWASCQIINLKLQGESKSVAYTSKILQTVHIAINTDKFIIIPILKTRYFFSIFNDINRPISLEDDFITLYSIHDVIDGSFVDVTNSAICNSIDKSSIICPLSMMKSSDQYFHTKFDNKSDNGRTRILPNKFDLILEMKTWKTVLFAPINLWVAQDWKLDINVK+INKINGWRVPVRSSVTREIICVTMFQRSRLKVLVRMVNRNTLGEKEFYGSTSSNGSPFLDITSQIPKNSIEFSPSSKIISYDEKFSELIVDPQSDVNDVEVRLLSVDSKRLLAIERVKIRLDKVIIANIKAFCVSSLDLFQDKSDIYSNYRRLHVEYILQNDTRKMCYLFIVVKLSDSSEIRLDEIPSNYYRAFITQYDYSSKHYIQVPFVVSRYI YSNQLNISLYESGSCRFSKLIFTGLVRINIQHSEDIPTTISSTMISTEITSTINPSTVNTNQIQNRELIKNLSSLYYGLYALIALVSLVALIVLVNCLVKFNYRKISHQSSNALNQSVNNKLLNSAQPPALADTSSPTTSFTKHPPLLPPPGPLRNASNSEVELPSSTFWSYCSSQDSSSFTNRKYSSTLLEPTISISPLNNFLIKTSPLVSSVYTNTKYRNNPSPSSDQGDGGYLSGENQSKITQIPLIKKLSDDRNANLESVDMTSSSSGGLSHYAEPYPVPPPCPPLKWSIQWATSMVSAIPVFSQSYTPNLITDSTCVISRAVPCGEPTSPINQWITNKTIPSSSSVPYTKSIDNLCEKSSGLGSLTSTQQEDYSMLSDDDNYHVSINSDKEHYRKYFKKC Sbjct: 1 MNWENIQILYIWYCILKLIRSEDISISPYLNAFKIYKKQSDFTLKSFAFINPAVHNFNLTTKLEDDIKDNQFIKSDFSVSIHTDKHQYYDLDKTESYTINTICKFDYIPEKIYLFRNICCRITIQDFNFTSNDFYSIKFCKFSLSRHSSACFIDLMFQKSFIPKPSSADHFYFGLRAFAVATNSDHCTSHSDDMRILAVSKLYPLSFSNGLSVFWTNIFQSNLNFSLEIGRPFYSIDPDSFVSFPIKLISDKMFSQMNLQCIISENLEIKSVFFDENIFDAQYKIAALPNRFIITILLENKGMNYLKSSQWWVDRGLLLFIMYGRITESYMLSRKNDLRTAWASCQIINLKLQGESKSVAYTSKILQTVHIAINTDKFIIIPILKTRYFFSIFNDINRPISLEDDFITLYSIHDVIDGSFVDVTNSAICNSIDKSSIICPLSMMKSSDQYFHTKFDNKSDNGRTRILPNKFDLILEMKTWKTVLFAPINLWVAQDWKLDINVKVINKINGWRVPVRSSVTREIICVTMFQRSRLKVLVRMVNRNTLGEKEFYGSTSSNGSPFLDITSQIPKNSIEFSPSSKIISYDEKFSELIVDPQSDVNDVEVRLLSVDSKRLLAIERVKIRLDKVIIANIKAFCVSSLDLFQDKSDIYSNYRRLHVEYILQNDTRKMCYLFIVVKLSDSSEIRLDEIPSNYYRAFITQYDYSSKHYIQVPFVVSRYILYSNQLNISLYESGSCRFSKLIFTGLVRINIQHSEDIPTTISSTMISTEITSTINPSTVNTNQIQNRELIKNLSSLYYGLYALIALVSLVALIVLVNCLVKFNYRKISHQSSNALNQSVNNKLLNSAQPPALADTSSPTTSFTKHPPLLPPPGPLRNASNSEVELPSSTFWSYCSSQDSSSFTNRKYSSTLLEPTISISPLNNFLIKTSPLVSSVYTNTKYRNNPSPSSDQGDGGYLSGENQSKITQIPLIKKLSDDRNANLESVDMTSSSSGGLSHYAEPYPVPPPCPPLKWSIQWATSMVSAIPVFSQSYTPNLITDSTCVISRAVPCGEPTSPINQWITNKTIPSSSSVPYTKSIDNLCEKSSGLGSLTSTQQEDYSMLSDDDNYHVSINSDKEHYRKYFKKC 1126 HSP 2 Score: 239.58 bits (610), Expect = 2.891e-64 Identity = 138/167 (82.63%), Postives = 140/167 (83.83%), Query Frame = -2 Query: 3 MNWENIQILYIWYCILKLIRSEDISISPYLNAXX------------------------XXXXXXXXXXXXXXXKSDFSVSIHTDKHQYYDLDKTESYTINTICKFDYIPEKIYLFRNICCRITIQDFNFTSNDFYSIKFCKFSLSRHSSACFIDLMFQKSFIPKPSS 431 MNWENIQILYIWYCILKLIRSEDISISPYLNAFK + K +DDIKDNQFIKSDFSVSIHTDKHQYYDLDKTESYTINTICKFDYIPEKIYLFRNICCRITIQDFNFTSNDFYSIKFCKFSLSRHSSACFIDLMFQKSFIPKPSS Sbjct: 1 MNWENIQILYIWYCILKLIRSEDISISPYLNAFKIYKKQSDFTLKSFAFINPAVHNFNLTTKLEDDIKDNQFIKSDFSVSIHTDKHQYYDLDKTESYTINTICKFDYIPEKIYLFRNICCRITIQDFNFTSNDFYSIKFCKFSLSRHSSACFIDLMFQKSFIPKPSS 167
BLAST of SMED30035644 vs. Planmine SMEST
Match: SMESG000014253.1 (SMESG000014253.1) HSP 1 Score: 1063.91 bits (2750), Expect = 0.000e+0 Identity = 598/599 (99.83%), Postives = 598/599 (99.83%), Query Frame = 1 Query: 2122 MFQRSRLKVLVRMVNRNTLGEKEFYGSTSSNGSPFLDITSQIPKNSIEFSPSSKIISYDEKFSELIVDPQSDVNDVEVRLLSVDSKRLLAIERVKIRLDKVIIANIKAFCVSSLDLFQDKSDIYSNYRRLHVEYILQNDTRKMCYLFIVVKLSDSSEIRLDEIPSNYYRAFITQYDYSSKHYIQVPFVVSRYIPYSNQLNISLYESGSCRFSKLIFTGLVRINIQHSEDIPXXXXXXXXXXXXXXXXNPSTVNTNQIQNRELIKNLSSLYYGXXXXXXXXXXXXXXXXXNCLVKFNYRKISHQSSNALNQSVNNKLLNSAQPPALADTSSPTTSFTKHXXXXXXXXXXRNASNSEVELPSSTFWSYCSSQDSSSFTNRKYSSTLLEPTISISPLNNFLIKTSPLVSSVYTNTKYRNNPSPSSDQGDGGYLSGENQSKITQIPLIKKLSDDRNANLESVDMTSSSSGGLSHYAEXXXXXXXXXXLKWSIQWATSMVSAIPVFSQSYTPNLITDSTCVISRAVPCGEPTSPINQWITNKTIPSSSSVPYTKSIDNLCEKSSGLGSLTSTQQEDYSMLSDDDNYHVSINSDKEHYRKYFKKC 3918 MFQRSRLKVLVRMVNRNTLGEKEFYGSTSSNGSPFLDITSQIPKNSIEFSPSSKIISYDEKFSELIVDPQSDVNDVEVRLLSVDSKRLLAIERVKIRLDKVIIANIKAFCVSSLDLFQDKSDIYSNYRRLHVEYILQNDTRKMCYLFIVVKLSDSSEIRLDEIPSNYYRAFITQYDYSSKHYIQVPFVVSRYI YSNQLNISLYESGSCRFSKLIFTGLVRINIQHSEDIPTTISSTMISTEITSTINPSTVNTNQIQNRELIKNLSSLYYGLYALIALVSLVALIVLVNCLVKFNYRKISHQSSNALNQSVNNKLLNSAQPPALADTSSPTTSFTKHPPLLPPPGPLRNASNSEVELPSSTFWSYCSSQDSSSFTNRKYSSTLLEPTISISPLNNFLIKTSPLVSSVYTNTKYRNNPSPSSDQGDGGYLSGENQSKITQIPLIKKLSDDRNANLESVDMTSSSSGGLSHYAEPYPVPPPCPPLKWSIQWATSMVSAIPVFSQSYTPNLITDSTCVISRAVPCGEPTSPINQWITNKTIPSSSSVPYTKSIDNLCEKSSGLGSLTSTQQEDYSMLSDDDNYHVSINSDKEHYRKYFKKC Sbjct: 1 MFQRSRLKVLVRMVNRNTLGEKEFYGSTSSNGSPFLDITSQIPKNSIEFSPSSKIISYDEKFSELIVDPQSDVNDVEVRLLSVDSKRLLAIERVKIRLDKVIIANIKAFCVSSLDLFQDKSDIYSNYRRLHVEYILQNDTRKMCYLFIVVKLSDSSEIRLDEIPSNYYRAFITQYDYSSKHYIQVPFVVSRYILYSNQLNISLYESGSCRFSKLIFTGLVRINIQHSEDIPTTISSTMISTEITSTINPSTVNTNQIQNRELIKNLSSLYYGLYALIALVSLVALIVLVNCLVKFNYRKISHQSSNALNQSVNNKLLNSAQPPALADTSSPTTSFTKHPPLLPPPGPLRNASNSEVELPSSTFWSYCSSQDSSSFTNRKYSSTLLEPTISISPLNNFLIKTSPLVSSVYTNTKYRNNPSPSSDQGDGGYLSGENQSKITQIPLIKKLSDDRNANLESVDMTSSSSGGLSHYAEPYPVPPPCPPLKWSIQWATSMVSAIPVFSQSYTPNLITDSTCVISRAVPCGEPTSPINQWITNKTIPSSSSVPYTKSIDNLCEKSSGLGSLTSTQQEDYSMLSDDDNYHVSINSDKEHYRKYFKKC 599
BLAST of SMED30035644 vs. Planmine SMEST
Match: SMESG000014253.1 (SMESG000014253.1) HSP 1 Score: 1040.02 bits (2688), Expect = 0.000e+0 Identity = 586/587 (99.83%), Postives = 586/587 (99.83%), Query Frame = 1 Query: 2158 MVNRNTLGEKEFYGSTSSNGSPFLDITSQIPKNSIEFSPSSKIISYDEKFSELIVDPQSDVNDVEVRLLSVDSKRLLAIERVKIRLDKVIIANIKAFCVSSLDLFQDKSDIYSNYRRLHVEYILQNDTRKMCYLFIVVKLSDSSEIRLDEIPSNYYRAFITQYDYSSKHYIQVPFVVSRYIPYSNQLNISLYESGSCRFSKLIFTGLVRINIQHSEDIPXXXXXXXXXXXXXXXXNPSTVNTNQIQNRELIKNLSSLYYGXXXXXXXXXXXXXXXXXNCLVKFNYRKISHQSSNALNQSVNNKLLNSAQPPALADTSSPTTSFTKHXXXXXXXXXXRNASNSEVELPSSTFWSYCSSQDSSSFTNRKYSSTLLEPTISISPLNNFLIKTSPLVSSVYTNTKYRNNPSPSSDQGDGGYLSGENQSKITQIPLIKKLSDDRNANLESVDMTSSSSGGLSHYAEXXXXXXXXXXLKWSIQWATSMVSAIPVFSQSYTPNLITDSTCVISRAVPCGEPTSPINQWITNKTIPSSSSVPYTKSIDNLCEKSSGLGSLTSTQQEDYSMLSDDDNYHVSINSDKEHYRKYFKKC 3918 MVNRNTLGEKEFYGSTSSNGSPFLDITSQIPKNSIEFSPSSKIISYDEKFSELIVDPQSDVNDVEVRLLSVDSKRLLAIERVKIRLDKVIIANIKAFCVSSLDLFQDKSDIYSNYRRLHVEYILQNDTRKMCYLFIVVKLSDSSEIRLDEIPSNYYRAFITQYDYSSKHYIQVPFVVSRYI YSNQLNISLYESGSCRFSKLIFTGLVRINIQHSEDIPTTISSTMISTEITSTINPSTVNTNQIQNRELIKNLSSLYYGLYALIALVSLVALIVLVNCLVKFNYRKISHQSSNALNQSVNNKLLNSAQPPALADTSSPTTSFTKHPPLLPPPGPLRNASNSEVELPSSTFWSYCSSQDSSSFTNRKYSSTLLEPTISISPLNNFLIKTSPLVSSVYTNTKYRNNPSPSSDQGDGGYLSGENQSKITQIPLIKKLSDDRNANLESVDMTSSSSGGLSHYAEPYPVPPPCPPLKWSIQWATSMVSAIPVFSQSYTPNLITDSTCVISRAVPCGEPTSPINQWITNKTIPSSSSVPYTKSIDNLCEKSSGLGSLTSTQQEDYSMLSDDDNYHVSINSDKEHYRKYFKKC Sbjct: 1 MVNRNTLGEKEFYGSTSSNGSPFLDITSQIPKNSIEFSPSSKIISYDEKFSELIVDPQSDVNDVEVRLLSVDSKRLLAIERVKIRLDKVIIANIKAFCVSSLDLFQDKSDIYSNYRRLHVEYILQNDTRKMCYLFIVVKLSDSSEIRLDEIPSNYYRAFITQYDYSSKHYIQVPFVVSRYILYSNQLNISLYESGSCRFSKLIFTGLVRINIQHSEDIPTTISSTMISTEITSTINPSTVNTNQIQNRELIKNLSSLYYGLYALIALVSLVALIVLVNCLVKFNYRKISHQSSNALNQSVNNKLLNSAQPPALADTSSPTTSFTKHPPLLPPPGPLRNASNSEVELPSSTFWSYCSSQDSSSFTNRKYSSTLLEPTISISPLNNFLIKTSPLVSSVYTNTKYRNNPSPSSDQGDGGYLSGENQSKITQIPLIKKLSDDRNANLESVDMTSSSSGGLSHYAEPYPVPPPCPPLKWSIQWATSMVSAIPVFSQSYTPNLITDSTCVISRAVPCGEPTSPINQWITNKTIPSSSSVPYTKSIDNLCEKSSGLGSLTSTQQEDYSMLSDDDNYHVSINSDKEHYRKYFKKC 587
BLAST of SMED30035644 vs. Planmine SMEST
Match: SMESG000036221.1 (SMESG000036221.1) HSP 1 Score: 186.422 bits (472), Expect = 1.884e-47 Identity = 158/678 (23.30%), Postives = 311/678 (45.87%), Query Frame = 1 Query: 592 LIRSEDISISPYLNAFKIYKKQSDFTLKSFAFINPAVHNFNLTTKLEDDIKDNQFIKSDFSVSIHTDKHQY--YDLDKTESYTINTICKFDYIPEKIYLFRNICCRITIQDFNFTSNDFYSIKFCKFSLSRHSSACFIDLMF-QKSFIPKPSSADHFYFGLRAFAVATNSDHCTSHSDDMRILAVSKLYPLSFSNGLSVFWTNIFQSNLNFSLEIGRPFYSIDPDSFVSFPIKLISDKMFSQMNLQCIISENLEIKSVFFDENIFDAQY-KIAALPNRFII--TILLENKGMNYLKSSQWWVDRGLLLFIMYGRITESYMLSRKNDLRTAWASCQIINLKL-QGESKSVAYTSKILQTVHIAINTDKFIIIPILKTRYFFSIFNDINRPISLEDDFITLYSIHDVIDGSFVDVTNSAICNSIDKSSIICPLSMMKSSDQYFHTKFDNKSDNGRTRILPNKFDLILEMKTWKTVLFAPINLWVAQDWKLDINVKIINKINGWRVPVRSSVTREIICVTMFQRSRLKVLVRMVNRNTLGEKEFYGSTSSNGSPFLDITSQIPKNSIEFSPSSKIISYDEKFSELIVDPQS-DVNDVEVRLLSVDSKRLLAIERVKIRLDKVIIANIKAFCVSSLDLFQDKSDIYSNYRRLHVEYILQNDTRKMCYLFIVVKLSDSSEIRL 2601 L I+I+P + F Y + + + NP + N++ + K ++ ++ TDK ++ T++ T+ IC+F + + + + +CC + ++ T++ + K+C+ +++ +S C + ++F K S+ + R FA + C+S + + LA+ L+ L V W I ++ L IG P S++P S FP+K+ S +++ + +QC +L++ S+ FD F KI +I + LEN G + ++ ++Y RI + +K+D W SC+II + +SK T++ + + I +N F I PILK +FSI + + PI + + + + S H++ D SF D+T + C + S + CP + K+S++ K K D ++++L +++WK + PI LW A DW+L + +NKI+GW C +FQ +R K+L R++ ++ +YG + + P LD+T + K +I+ S ++ + F L QS + E+ + S + +A + ++ +V I +++ C+ + + Q + + ++ V L D+ + CY I++ +D+ + L Sbjct: 15 LAECTTINITPLRSGFVKYPGEFSDNYE-IIYKNPLENKMNISVLFGNLTKTKNLEPLNYITNVFTDKTRFSIQSNQLTDTSTVYAICQFTHGNSRPFEYNKVCCEMILKRLG-TNSKIFDRKYCQMDVNKDTSVCSVQFQIPHENFEFKTSTEEQLDISSRVFA--SQDGKCSSTAIGVSNLALGYPTKLTIMQDLLVKWKIIDSTDSFGELLIGLPLDSMEPGSKSIFPLKINSTAVYNSLAIQCSHGRSLKLSSISFDSVRFTGTLQKITDTKKEILIEESNSLENSG-----------GQRIVELLVYLRIHHLNSIPKKSD---NWISCKIIQASFDKNKSKKSRKTTEKEKKISIQVNIGHFYIFPILKRSIYFSILDTVMGPIEMGKNDLKILSAHNIGDESFSDITQTTECQPVSPSVLKCPF-VRKTSNE-ISKKIIRKPD----------WNVVLSLRSWKKTVTVPIELWQADDWRLTTTDRTLNKISGWNYK-----NSNYQCEPVFQVTRCKLLARLMKDTFDSKRSYYGQSELDKIPLLDMTPYLRKQNIKLSTNNFNVDLRNDFMLL----QSVQIGSSEISIFDNHSSK-IAFDFIQADAQEVSIVDMEVSCIHDVHINQTINSNDLPFHKILVSQRLSEDSTQACYFQILLTFNDNKKSNL 652
BLAST of SMED30035644 vs. Planmine SMEST
Match: SMESG000068172.1 (SMESG000068172.1) HSP 1 Score: 131.339 bits (329), Expect = 1.612e-30 Identity = 179/737 (24.29%), Postives = 317/737 (43.01%), Query Frame = 1 Query: 673 KSFAFINPAVHNFNLTTKLED---DIKDNQFIKSDFSVSIHTDKHQYYDLDKTESYTINTICKFDY---IPEKIYLFRNICCRITIQDFNFTSNDFYSIKFCKFSLSRHSSACFIDLMFQKSFIPKPSSADHFYFGLRAFAVATNSDHCTSHSDDMRILAVSKLYPLSFSNGLSVFWTNIFQSNLNFSLEIGRPFYSIDPDSFVSFPIKLISD--KMFSQM-NLQCIISENLEIKSVFFD-ENIFDAQYKIAALPNRFIITILLENKGMNYLKSSQWWVDRGLLLFIMYGRITESYMLSRKNDLRTAWASCQIINLKLQGESKSVAYTSKILQTVHIAINTDKFIIIPILK-TRYFFSIFNDINRPISLEDDFITLYSIHDVIDGSFVDVTNSAICNSIDKSSIICPLSMMKSSDQYFHTKFDNKSDNGRTRILPNKFDLILEMKTWKTVLFAPINLWVAQDWKLDINVKIINKINGWRVPVRSSVTREIICVTMFQRSRLKVLVRMVNRNTLGEKEFYGST--SSNGSPFLDITSQIPKNSIEFSPSSKIISYDEKFSE---LIVDPQSDVNDVEVRLLSVDSKRLLAIERVKIRLDKVIIANIKAFCVSSLDLFQDKS-----DIYSNYRRLHVEYILQNDTRKMCYLFIVVKLSDSSEIRLDEIPSNYYRAFITQYDYSSKHY--IQVPFVVSRYIPYSNQLNISLYESGSCRFSKLIFTGLVR-INIQHSEDI 2811 + F N + N N+T KL D + N+ +S ++V I ++ Y + INTIC+F Y I ++ L + CCR+ + ++ + + C SL R CFI + F S + L +S C + I VSK +SFS+ L V W ++ IG P YS+ + P++L+SD + +Q+ + C + N SV + EN+ + N I+ + L+ + L +M+ +T KN L+ C+II + K+ Y + + + D II+P++K +R FSI++ N I ++D + LY I + D S +++ +D P+ + S+ D N +T + N + + ++ L +P+ +W + WKL ++ +I+ I W V S CV ++ +RLK++ R+ GEK + G+ +N P++D+T+ N I+F P I S ++ ++ LI Q+D + ++L S S+ L +++ + + ++ C+ +L L Q K + S Y+ + V + K CYL + VK SD S RL I Y+ +T D Y V R++P ++N+SLYE SC +LIF+ + + ++ S +I Sbjct: 52 QRFVIFNSEI-NQNITVKLGDLQSALPLNEKSES-YNVKIFAERRGYLPPSNSNEIVINTICQFTYSLAIMSRLEL--DFCCRVELLIYSKSKSILNPFGVCDLSLRRDEVHCFIPIKFVYS-----QYLNEKILPLIGIVHKKSSGSCHFQPEPKDIYKVSKGLGISFSSRLPVIWQPTHSQK--STILIGIPLYSVKDYENLLIPVRLVSDLVDLTNQIIRINCQLDPNFVFHSVIVNSENVSIIEDPEIEDENWTIVDVKLK-------------ITPSLDQQLMFLNVTVKLDSMTKNSLKFIKVKCKII--PRNNKHKARLYDDATEVKIPLRTSND-LIILPVVKESRDIFSIYSKPN--IDFQNDPLQLYIITNYRDRSVKKISSKFQMYPVD------PIHLSVHSNNQSLMSMDM---NYQTYL--NPWSIQVQFIDNLHTLISPVRVWRPESWKLMLSDEILRPIKNWAVYQPDSEE----CVPRYKVARLKIMCRLFLIEETGEKRYIGTEDDDTNQIPYIDVTANTKLNQIKFYPED-IFSIEKSLNQEYFLITAKQADKSS-SIKLFSEYSQTPLTSKQISADQQYISVVDLIVNCIDALSLVQQKRSKKSLNSPSYYKSITVS-LTSKSPSKPCYLIVFVKFSDGSIERLSLINITQYQLSLTNPDSDMFIYKITDNQLVTVRHMP---RVNMSLYEDNSCSPPRLIFSKKIEWVTVEPSNNI 738 The following BLAST results are available for this feature:
BLAST of SMED30035644 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30035644 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30035644 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30035644 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30035644 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30035644 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30035644 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30035644 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 0
BLAST of SMED30035644 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30035644 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30035644 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30035644 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30035644 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30035644 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30035644 ID=SMED30035644|Name=SMED30035644|organism=Schmidtea mediterranea sexual|type=transcript|length=4077bpback to top protein sequence of SMED30035644-orf-1 >SMED30035644-orf-1 ID=SMED30035644-orf-1|Name=SMED30035644-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=143bp MNWENIQILYIWYCILKLIRSEDISISPYLNAFKIYKKQKDDIKDNQFIKback to top protein sequence of SMED30035644-orf-2 >SMED30035644-orf-2 ID=SMED30035644-orf-2|Name=SMED30035644-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1127bp MNWENIQILYIWYCILKLIRSEDISISPYLNAFKIYKKQSDFTLKSFAFIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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