RING-type domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30035284 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9Note: Hover over icons to view figure legend
Homology
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: RLIM (ring finger protein, LIM domain interacting [Source:HGNC Symbol;Acc:HGNC:13429]) HSP 1 Score: 55.4546 bits (132), Expect = 2.960e-8 Identity = 25/71 (35.21%), Postives = 41/71 (57.75%), Query Frame = 1 Query: 349 RVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVV 561 R +T EQID+L + ++CS+C +E+TE ++ L C H++H C+ +WL + CP+CR V Sbjct: 546 RGLTKEQIDNLAMRSFGEN-DALKTCSVCITEYTEG-NKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 614
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: RLIM (ring finger protein, LIM domain interacting [Source:HGNC Symbol;Acc:HGNC:13429]) HSP 1 Score: 55.4546 bits (132), Expect = 2.960e-8 Identity = 25/71 (35.21%), Postives = 41/71 (57.75%), Query Frame = 1 Query: 349 RVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVV 561 R +T EQID+L + ++CS+C +E+TE ++ L C H++H C+ +WL + CP+CR V Sbjct: 546 RGLTKEQIDNLAMRSFGEN-DALKTCSVCITEYTEG-NKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 614
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: RNF139 (ring finger protein 139 [Source:HGNC Symbol;Acc:HGNC:17023]) HSP 1 Score: 55.4546 bits (132), Expect = 3.130e-8 Identity = 31/87 (35.63%), Postives = 46/87 (52.87%), Query Frame = 1 Query: 343 LNRVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFS--TKTNNNNDN 597 +NR ++I+SLP I S ++ C+IC+ EFT + ++ C H FH CL+KWL + CP+C V K N+N N Sbjct: 520 MNRRTAVKKINSLPEIKGSRLQEINDVCAICYHEFTTSA---RITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIEDDIKDNSNVSN 603
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: ZNRF3 (zinc and ring finger 3 [Source:HGNC Symbol;Acc:HGNC:18126]) HSP 1 Score: 54.299 bits (129), Expect = 7.760e-8 Identity = 18/44 (40.91%), Postives = 30/44 (68.18%), Query Frame = 1 Query: 424 CSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRH 555 C+IC ++ + +++++ C H+FH+ C+ WLLQ H CP CRH Sbjct: 293 CAICLEKYIDG-EELRVIPCTHRFHRKCVDPWLLQHHTCPHCRH 335
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: ZNRF3 (zinc and ring finger 3 [Source:HGNC Symbol;Acc:HGNC:18126]) HSP 1 Score: 54.299 bits (129), Expect = 8.158e-8 Identity = 18/44 (40.91%), Postives = 30/44 (68.18%), Query Frame = 1 Query: 424 CSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRH 555 C+IC ++ + +++++ C H+FH+ C+ WLLQ H CP CRH Sbjct: 193 CAICLEKYIDG-EELRVIPCTHRFHRKCVDPWLLQHHTCPHCRH 235
BLAST of RING-type domain-containing protein vs. Ensembl Celegans
Match: plr-1 (Probable E3 ubiquitin-protein ligase plr-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9U2B7]) HSP 1 Score: 56.225 bits (134), Expect = 6.179e-9 Identity = 23/59 (38.98%), Postives = 36/59 (61.02%), Query Frame = 1 Query: 376 SLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCR 552 SL ++ S+ + E C IC E+ E ++++L CGH+FH C+ WLL K CP+C+ Sbjct: 301 SLTSVAQSSSHSAQERCVICLEEYEEG-TELRVLFCGHEFHPKCVDPWLLSKRRCPLCQ 358
BLAST of RING-type domain-containing protein vs. Ensembl Celegans
Match: rnf-145 (RiNg Finger protein [Source:UniProtKB/TrEMBL;Acc:Q95Y82]) HSP 1 Score: 52.7582 bits (125), Expect = 9.839e-8 Identity = 28/81 (34.57%), Postives = 41/81 (50.62%), Query Frame = 1 Query: 307 NRLFQTGNFTNNLNRVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVC 549 RL T +F N N + + I+ L D+ ++ C+ICF E E + ++ C H FH CL+KWL K CP+C Sbjct: 555 KRLEHTVSFIKNRNAAV--KNINRLSKADVVQLREREDVCAICFIEMKE---EARITPCKHYFHGPCLRKWLAVKMVCPLC 630
BLAST of RING-type domain-containing protein vs. Ensembl Celegans
Match: hrdl-1 (E3 ubiquitin-protein ligase hrd-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P90859]) HSP 1 Score: 49.6766 bits (117), Expect = 9.558e-7 Identity = 21/51 (41.18%), Postives = 26/51 (50.98%), Query Frame = 1 Query: 400 NCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCR 552 C N D+ C +C+ E + + L C HQFH CL WL Q CP CR Sbjct: 342 KCANGDDRCVVCW----ELLGTSRRLPCSHQFHDWCLMWWLAQDSSCPTCR 388
BLAST of RING-type domain-containing protein vs. Ensembl Celegans
Match: trul-1 (pep chromosome:WBcel235:II:279128:282576:-1 gene:WBGene00015194.1 transcript:B0432.13.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trul-1) HSP 1 Score: 48.1358 bits (113), Expect = 2.915e-6 Identity = 19/47 (40.43%), Postives = 27/47 (57.45%), Query Frame = 1 Query: 421 SCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVV 561 SCSICF + + I + CGH +H C+ +W+ K +CP CR V Sbjct: 12 SCSICFEDLKQN-DKISAIVCGHIYHHGCISQWIATKRQCPSCRRTV 57
BLAST of RING-type domain-containing protein vs. Ensembl Celegans
Match: trul-1 (pep chromosome:WBcel235:II:278621:282576:-1 gene:WBGene00015194.1 transcript:B0432.13.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trul-1) HSP 1 Score: 48.1358 bits (113), Expect = 2.915e-6 Identity = 19/47 (40.43%), Postives = 27/47 (57.45%), Query Frame = 1 Query: 421 SCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVV 561 SCSICF + + I + CGH +H C+ +W+ K +CP CR V Sbjct: 12 SCSICFEDLKQN-DKISAIVCGHIYHHGCISQWIATKRQCPSCRRTV 57
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Match: Trc8 (gene:FBgn0039668 transcript:FBtr0333188) HSP 1 Score: 58.151 bits (139), Expect = 2.087e-9 Identity = 23/74 (31.08%), Postives = 39/74 (52.70%), Query Frame = 1 Query: 367 QIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNNN 588 +I +LP + +D+ C+IC+ E K+ C H FH CL+KWL + CP+C ++ ++ K + N Sbjct: 597 KISALPEATPAQLQAFDDVCAICYQEMYSA----KITRCRHFFHGVCLRKWLYVQDRCPLCHEIMMYTDKADEN 666
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Match: Trc8 (gene:FBgn0039668 transcript:FBtr0085430) HSP 1 Score: 58.151 bits (139), Expect = 2.087e-9 Identity = 23/74 (31.08%), Postives = 39/74 (52.70%), Query Frame = 1 Query: 367 QIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNNN 588 +I +LP + +D+ C+IC+ E K+ C H FH CL+KWL + CP+C ++ ++ K + N Sbjct: 597 KISALPEATPAQLQAFDDVCAICYQEMYSA----KITRCRHFFHGVCLRKWLYVQDRCPLCHEIMMYTDKADEN 666
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Match: Trc8 (gene:FBgn0039668 transcript:FBtr0085429) HSP 1 Score: 58.151 bits (139), Expect = 2.087e-9 Identity = 23/74 (31.08%), Postives = 39/74 (52.70%), Query Frame = 1 Query: 367 QIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNNN 588 +I +LP + +D+ C+IC+ E K+ C H FH CL+KWL + CP+C ++ ++ K + N Sbjct: 597 KISALPEATPAQLQAFDDVCAICYQEMYSA----KITRCRHFFHGVCLRKWLYVQDRCPLCHEIMMYTDKADEN 666
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Match: Trc8 (gene:FBgn0039668 transcript:FBtr0085432) HSP 1 Score: 58.151 bits (139), Expect = 2.090e-9 Identity = 23/74 (31.08%), Postives = 39/74 (52.70%), Query Frame = 1 Query: 367 QIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNNN 588 +I +LP + +D+ C+IC+ E K+ C H FH CL+KWL + CP+C ++ ++ K + N Sbjct: 602 KISALPEATPAQLQAFDDVCAICYQEMYSA----KITRCRHFFHGVCLRKWLYVQDRCPLCHEIMMYTDKADEN 671
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Match: mura (gene:FBgn0037705 transcript:FBtr0082116) HSP 1 Score: 54.299 bits (129), Expect = 4.125e-8 Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 1 Query: 349 RVITDEQIDSLPTIDISNCV-NYDES-CSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCR 552 R +T +ID LP+ + V N D+S C +C +F E +++L C H+FH C+ KWL CP+CR Sbjct: 745 RGLTRNEIDQLPSYKFNPEVHNGDQSSCVVCMCDF-ELRQLLRVLPCSHEFHAKCVDKWLRSNRTCPICR 813
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: rnf139 (ring finger protein 139 [Source:ZFIN;Acc:ZDB-GENE-080401-4]) HSP 1 Score: 57.7658 bits (138), Expect = 3.222e-9 Identity = 32/97 (32.99%), Postives = 53/97 (54.64%), Query Frame = 1 Query: 343 LNRVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNNNNDNEKRTFSSILNNG 633 +NR ++I+SLP + S + ++ C+IC+ EF + ++ C H FH CL+KWL + CP+C V ++ +E+ TFS+ NNG Sbjct: 510 INRRTAVKKINSLPEVRGSRLRDIEDVCAICYQEFGSSA---RITPCSHYFHALCLRKWLYIQDTCPMCHQRVYI-----EDDTSERSTFSN--NNG 596
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: rlim (ring finger protein, LIM domain interacting [Source:ZFIN;Acc:ZDB-GENE-120809-2]) HSP 1 Score: 57.7658 bits (138), Expect = 3.331e-9 Identity = 29/80 (36.25%), Postives = 44/80 (55.00%), Query Frame = 1 Query: 349 RVITDEQIDSLPTIDISNCVNYDES-----CSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFST 573 R +T EQID+L + N+ ES CS+C +E+ E ++ L C H++H C+ +WL + CP+CR V ST Sbjct: 560 RGLTKEQIDNL------SMRNFGESDAFKTCSVCITEYAEG-NKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLIST 632
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: rlim (ring finger protein, LIM domain interacting [Source:ZFIN;Acc:ZDB-GENE-120809-2]) HSP 1 Score: 57.7658 bits (138), Expect = 3.331e-9 Identity = 29/80 (36.25%), Postives = 44/80 (55.00%), Query Frame = 1 Query: 349 RVITDEQIDSLPTIDISNCVNYDES-----CSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFST 573 R +T EQID+L + N+ ES CS+C +E+ E ++ L C H++H C+ +WL + CP+CR V ST Sbjct: 560 RGLTKEQIDNL------SMRNFGESDAFKTCSVCITEYAEG-NKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLIST 632
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: znrf3 (zinc and ring finger 3 [Source:NCBI gene;Acc:556813]) HSP 1 Score: 55.0694 bits (131), Expect = 3.308e-8 Identity = 21/53 (39.62%), Postives = 33/53 (62.26%), Query Frame = 1 Query: 424 CSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTN 582 C+IC ++ + +++++ C H+FHK C+ WLLQ H CP CRH + K N Sbjct: 265 CAICLEKYIDG-EELRVIPCAHRFHKKCVDPWLLQHHTCPHCRHNIIDQKKGN 316
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: znrf3 (zinc and ring finger 3 [Source:NCBI gene;Acc:556813]) HSP 1 Score: 54.299 bits (129), Expect = 5.446e-8 Identity = 21/53 (39.62%), Postives = 33/53 (62.26%), Query Frame = 1 Query: 424 CSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTN 582 C+IC ++ + +++++ C H+FHK C+ WLLQ H CP CRH + K N Sbjct: 150 CAICLEKYIDG-EELRVIPCAHRFHKKCVDPWLLQHHTCPHCRHNIIDQKKGN 201
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: fbxo30 (F-box protein 30 [Source:Xenbase;Acc:XB-GENE-5934558]) HSP 1 Score: 58.5362 bits (140), Expect = 2.857e-9 Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 1 Query: 358 TDEQIDSLPTIDIS---NCVNYDESCSICFSEFTETIAD--IKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFS 570 T E ID LP I I N V ++ C+IC SE+ I D + L C H FHK C+ WL + CPVCRHV++ S Sbjct: 622 TKESIDCLPQIIIGEDHNIVGQEQCCAICCSEY---IKDEILTELPCHHLFHKPCVTLWLQKSGTCPVCRHVLASS 694
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: fbxo30 (F-box protein 30 [Source:Xenbase;Acc:XB-GENE-5934558]) HSP 1 Score: 58.5362 bits (140), Expect = 3.169e-9 Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 1 Query: 358 TDEQIDSLPTIDIS---NCVNYDESCSICFSEFTETIAD--IKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFS 570 T E ID LP I I N V ++ C+IC SE+ I D + L C H FHK C+ WL + CPVCRHV++ S Sbjct: 681 TKESIDCLPQIIIGEDHNIVGQEQCCAICCSEY---IKDEILTELPCHHLFHKPCVTLWLQKSGTCPVCRHVLASS 753
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: gnrh1 (gonadotropin releasing hormone 1 [Source:Xenbase;Acc:XB-GENE-960286]) HSP 1 Score: 57.3806 bits (137), Expect = 6.816e-9 Identity = 26/71 (36.62%), Postives = 43/71 (60.56%), Query Frame = 1 Query: 349 RVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVV 561 R +T EQID+L T + + ++CS+C +E+TE ++ L C H++H C+ +WL + CP+CR V Sbjct: 530 RGLTKEQIDNLSTRNFGEN-DALKTCSVCITEYTEG-NKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 598
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: gnrh1 (gonadotropin releasing hormone 1 [Source:Xenbase;Acc:XB-GENE-960286]) HSP 1 Score: 57.3806 bits (137), Expect = 7.145e-9 Identity = 26/71 (36.62%), Postives = 43/71 (60.56%), Query Frame = 1 Query: 349 RVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVV 561 R +T EQID+L T + + ++CS+C +E+TE ++ L C H++H C+ +WL + CP+CR V Sbjct: 549 RGLTKEQIDNLSTRNFGEN-DALKTCSVCITEYTEG-NKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 617
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: ssr2 (signal sequence receptor, beta (translocon-associated protein beta) [Source:Xenbase;Acc:XB-GENE-970408]) HSP 1 Score: 54.6842 bits (130), Expect = 6.095e-8 Identity = 19/44 (43.18%), Postives = 30/44 (68.18%), Query Frame = 1 Query: 424 CSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRH 555 C+IC ++ + +++++ C H+FHK C+ WLLQ H CP CRH Sbjct: 266 CAICLEKYIDG-EELRVIPCTHRFHKRCVDPWLLQNHTCPHCRH 308
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Rnf139 (ring finger protein 139 [Source:MGI Symbol;Acc:MGI:1923091]) HSP 1 Score: 58.5362 bits (140), Expect = 2.098e-9 Identity = 29/84 (34.52%), Postives = 47/84 (55.95%), Query Frame = 1 Query: 343 LNRVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNNNND 594 +NR ++I+SLP I S+ D+ C+IC+ EFT + ++ C H FH CL+KWL + CP+C V + +N++ Sbjct: 520 MNRRTAVKKINSLPEIKGSHLQEIDDVCAICYHEFTTSA---RITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIEDEIKDNSN 600
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: 4930595M18Rik (RIKEN cDNA 4930595M18 gene [Source:MGI Symbol;Acc:MGI:3045300]) HSP 1 Score: 55.8398 bits (133), Expect = 1.895e-8 Identity = 29/77 (37.66%), Postives = 49/77 (63.64%), Query Frame = 1 Query: 337 NNLNRVITDEQIDSLPTIDISNCVNYDES-CSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCR-HVV 561 NN + +T+EQI++LP I C N + S CSIC +++ + + I++L C H++H C+ +WL CP+CR H++ Sbjct: 747 NNHPKGLTEEQINNLPVIYF--CENDEISHCSICLTQYIKN-SKIRVLPCFHEYHDKCIDRWLSDNSTCPICRKHII 820
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Rlim (ring finger protein, LIM domain interacting [Source:MGI Symbol;Acc:MGI:1342291]) HSP 1 Score: 55.4546 bits (132), Expect = 2.455e-8 Identity = 25/71 (35.21%), Postives = 41/71 (57.75%), Query Frame = 1 Query: 349 RVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVV 561 R +T EQID+L + ++CS+C +E+TE ++ L C H++H C+ +WL + CP+CR V Sbjct: 522 RGLTKEQIDNLAMRSFGEN-DALKTCSVCITEYTEG-NKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 590
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Rlim (ring finger protein, LIM domain interacting [Source:MGI Symbol;Acc:MGI:1342291]) HSP 1 Score: 55.4546 bits (132), Expect = 2.455e-8 Identity = 25/71 (35.21%), Postives = 41/71 (57.75%), Query Frame = 1 Query: 349 RVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVV 561 R +T EQID+L + ++CS+C +E+TE ++ L C H++H C+ +WL + CP+CR V Sbjct: 522 RGLTKEQIDNLAMRSFGEN-DALKTCSVCITEYTEG-NKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 590
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Znrf3 (zinc and ring finger 3 [Source:MGI Symbol;Acc:MGI:3039616]) HSP 1 Score: 54.299 bits (129), Expect = 6.727e-8 Identity = 18/44 (40.91%), Postives = 30/44 (68.18%), Query Frame = 1 Query: 424 CSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRH 555 C+IC ++ + +++++ C H+FH+ C+ WLLQ H CP CRH Sbjct: 290 CAICLEKYIDG-EELRVIPCTHRFHRKCVDPWLLQHHTCPHCRH 332
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q940T5|RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 1.405e-9 Identity = 34/116 (29.31%), Postives = 62/116 (53.45%), Query Frame = 1 Query: 346 NRVITDEQIDSLPTIDISNC-VNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCR-HVVSFSTKTNNNNDNEKRTFSSILNNGR*IQKYGYSVMKYNLFGR 687 N + I+SLP ++IS+C + + +C++C +E ET + + + C H FH C+ WL ++ CPVCR + S + +NNN+ + +I + G++V ++N R Sbjct: 172 NPPASKSAIESLPRVEISDCHIGSEANCAVC-TEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCRFELPSEPNRRSNNNEEDNAVGMTIWR----LPGGGFAVGRFNAAMR 282
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9LQX2|MPSR1_ARATH (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 8.575e-9 Identity = 38/130 (29.23%), Postives = 65/130 (50.00%), Query Frame = 1 Query: 280 IFMTRNSNINRLFQTGNFTNNLNRV-ITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVS-----FSTKTNNNNDNEKRTFSSILNNGR*IQKY 651 I + +S +N L ++ + R + ID++P ++I C + C IC E+ ++ +K + C H+FH C++KWL CPVCR+ + K N+ N+ R FS N+GR I+ + Sbjct: 67 IVLEGSSGMNPLLRSLLESREEGRPPASKASIDAMPIVEIDGC---EGECVICLEEW-KSEETVKEMPCKHRFHGGCIEKWLGFHGSCPVCRYEMPVDGDEIGKKRNDGNEIWVR-FS--FNDGRRIRDF 189
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q7TMV1|RN139_MOUSE (E3 ubiquitin-protein ligase RNF139 OS=Mus musculus OX=10090 GN=Rnf139 PE=1 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.481e-8 Identity = 29/84 (34.52%), Postives = 47/84 (55.95%), Query Frame = 1 Query: 343 LNRVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNNNND 594 +NR ++I+SLP I S+ D+ C+IC+ EFT + ++ C H FH CL+KWL + CP+C V + +N++ Sbjct: 520 MNRRTAVKKINSLPEIKGSHLQEIDDVCAICYHEFTTSA---RITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIEDEIKDNSN 600
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q7T037|RF12B_XENLA (E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis OX=8355 GN=rnf12-b PE=2 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.862e-8 Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 1 Query: 349 RVITDEQIDSLPTIDISNCVNYDE-----SCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVV 561 R +T EQID+L T NY E +CS+C +E+TE ++ L C H++H C+ +WL + CP+CR V Sbjct: 679 RGLTKEQIDNLST------RNYGENDALKTCSVCITEYTEG-NKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAV 747
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q7KRW1|TRC8_DROME (Protein TRC8 homolog OS=Drosophila melanogaster OX=7227 GN=Trc8 PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 2.095e-8 Identity = 23/74 (31.08%), Postives = 39/74 (52.70%), Query Frame = 1 Query: 367 QIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNNN 588 +I +LP + +D+ C+IC+ E K+ C H FH CL+KWL + CP+C ++ ++ K + N Sbjct: 602 KISALPEATPAQLQAFDDVCAICYQEMYSA----KITRCRHFFHGVCLRKWLYVQDRCPLCHEIMMYTDKADEN 671
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: A0A1J3JAD6 (E3 ubiquitin-protein ligase RING1 OS=Noccaea caerulescens OX=107243 GN=MP_TR9258_c0_g1_i1_g.28309 PE=4 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.057e-10 Identity = 35/124 (28.23%), Postives = 58/124 (46.77%), Query Frame = 1 Query: 280 IFMTRNSNINRLFQ--TGNFTNNLNRVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNNNNDNEKRTFSSILNNGR*IQ 645 I + +S +N LF+ G+ + + ID++P +DI C + C IC E+ +K + C H+FH C++KWL CPVCR+ + N+ R + + GR I+ Sbjct: 66 IVLDESSGLNPLFRDLLGSGEEG-HPPASKASIDAMPMVDIDGC--REGECVICLEEWKSEETTVKEMPCKHRFHGGCIEKWLGLHGSCPVCRYEMPVDGDEVEKKRNDGREIWVMFDGGRRIR 186
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: A0A1J3FTB9 (E3 ubiquitin-protein ligase RING1 OS=Noccaea caerulescens OX=107243 GN=LC_TR2672_c4_g1_i1_g.10020 PE=4 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.930e-10 Identity = 35/124 (28.23%), Postives = 58/124 (46.77%), Query Frame = 1 Query: 280 IFMTRNSNINRLFQ--TGNFTNNLNRVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNNNNDNEKRTFSSILNNGR*IQ 645 I + +S +N LF+ G+ + + ID++P +DI C + C IC E+ +K + C H+FH C++KWL CPVCR+ + N+ R + + GR I+ Sbjct: 66 IVLDESSGLNPLFRDLLGSGEEG-HPPASKASIDAMPMVDIDGC--REGECVICLEEWKSEETTVKEMPCKHRFHGGCIEKWLGLHGSCPVCRYEMPVDGDEVEKKRNDGREIWVMFDGGRRIR 186
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: A0A1J3CQH6 (E3 ubiquitin-protein ligase RING1 OS=Noccaea caerulescens OX=107243 GN=GA_TR13174_c0_g1_i1_g.41863 PE=4 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 1.114e-9 Identity = 35/124 (28.23%), Postives = 58/124 (46.77%), Query Frame = 1 Query: 280 IFMTRNSNINRLFQ--TGNFTNNLNRVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNNNNDNEKRTFSSILNNGR*IQ 645 I + +S +N LF+ G+ + + ID++P +DI C + C IC E+ +K + C H+FH C++KWL CPVCR+ + N+ R + + GR I+ Sbjct: 66 IVLDESSGLNPLFRDLLGSGEEG-HPPASKASIDAMPMVDIDGC--REGECVICLEEWKSEETTVKEMPCKHRFHGGCIEKWLGLHGSCPVCRYEMPVDGDEVEKKINDGREIWVMFDGGRRIR 186
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: A0A2G9I2T1 (Ubiquitin--protein ligase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_03193 PE=4 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 2.943e-9 Identity = 36/114 (31.58%), Postives = 55/114 (48.25%), Query Frame = 1 Query: 280 IFMTRNSN------INRLFQTGNFTNNLN--RVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNNNNDN 597 +F+ SN N LF GN + N R + ID++P+++I DE C +C E+ E + + CGH+FH C++KWL + CPVCR+ + N N Sbjct: 74 MFLMETSNDSPSLGFNSLF--GNLFSGKNDQRPASKASIDAMPSVEIEKGEKDDEQCVVCLEEW-ENGEKAQEMPCGHRFHGDCIEKWLKIRASCPVCRYEMPVDEDGEAGNKN 184
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: H3BEH3 (Ring finger protein 6 OS=Latimeria chalumnae OX=7897 GN=RNF6 PE=4 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.390e-9 Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 1 Query: 349 RVITDEQIDSLPTIDISNCV---NYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTN 582 R +T EQID+LPT + +C ++CS+C +E+ +K L C H+FH C+ +WL + CP+CR VS S K N Sbjct: 619 RGLTKEQIDNLPTRNYGDCSLECEISKTCSVCINEYA-AGNKLKRLPCAHEFHIHCIDRWLSENSTCPICRQRVSRSDKKN 698
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Match: rnf139 (ring finger protein 139 [Source:NCBI gene;Acc:103046007]) HSP 1 Score: 57.7658 bits (138), Expect = 2.857e-9 Identity = 31/94 (32.98%), Postives = 49/94 (52.13%), Query Frame = 1 Query: 283 FMTRNSNINRLFQTGN-FTNNLNRVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVV 561 M ++ N Q N + +NR ++I+SLP + S + ++ C+IC+ EF IA ++ C H FH CL+KWL + CP+C V Sbjct: 496 MMCLHAYFNIYLQAKNGWKTFINRRTAVKKINSLPEVKGSELRDVEDVCAICYQEF---IASARITPCRHYFHALCLRKWLYIQDTCPMCHQKV 586
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Match: rnf139 (ring finger protein 139 [Source:NCBI gene;Acc:103046007]) HSP 1 Score: 57.7658 bits (138), Expect = 3.379e-9 Identity = 38/118 (32.20%), Postives = 59/118 (50.00%), Query Frame = 1 Query: 286 MTRNSNINRLFQTGN-FTNNLNRVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNNNNDNEKRT-FSSILNNG 633 M ++ N Q N + +NR ++I+SLP + S + ++ C+IC+ EF IA ++ C H FH CL+KWL + CP+C K +D+ R FS+ NNG Sbjct: 497 MCLHAYFNIYLQAKNGWKTFINRRTAVKKINSLPEVKGSELRDVEDVCAICYQEF---IASARITPCRHYFHALCLRKWLYIQDTCPMCHQ------KVYVEDDSRDRAPFSN--NNG 603
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Match: pja2 (E3 ubiquitin-protein ligase Praja-2 [Source:NCBI gene;Acc:103023611]) HSP 1 Score: 56.6102 bits (135), Expect = 7.184e-9 Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1 Query: 370 IDSLP-TIDISNCVNYDESCSICFSEFT-ETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVS 564 IDSLP I + + ++SC+IC SE+ E +A L C H FHK C+ WL + CPVCRHV++ Sbjct: 556 IDSLPHIIVLDDHRGQEQSCAICCSEYVNEEVA--TQLPCRHMFHKLCVTLWLRKSGTCPVCRHVLT 620
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Match: pja2 (E3 ubiquitin-protein ligase Praja-2 [Source:NCBI gene;Acc:103023611]) HSP 1 Score: 56.6102 bits (135), Expect = 7.184e-9 Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1 Query: 370 IDSLP-TIDISNCVNYDESCSICFSEFT-ETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVS 564 IDSLP I + + ++SC+IC SE+ E +A L C H FHK C+ WL + CPVCRHV++ Sbjct: 556 IDSLPHIIVLDDHRGQEQSCAICCSEYVNEEVA--TQLPCRHMFHKLCVTLWLRKSGTCPVCRHVLT 620
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Match: pja2 (E3 ubiquitin-protein ligase Praja-2 [Source:NCBI gene;Acc:103023611]) HSP 1 Score: 56.6102 bits (135), Expect = 7.246e-9 Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 1 Query: 358 TDEQIDSLP-TIDISNCVNYDESCSICFSEFT-ETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVS 564 +++ IDSLP I + + ++SC+IC SE+ E +A L C H FHK C+ WL + CPVCRHV++ Sbjct: 484 SEQIIDSLPHIIVLDDHRGQEQSCAICCSEYVNEEVA--TQLPCRHMFHKLCVTLWLRKSGTCPVCRHVLT 552
BLAST of RING-type domain-containing protein vs. Ensembl Sea Lamprey
Match: rnf111 (ring finger protein 111 [Source:ZFIN;Acc:ZDB-GENE-070808-2]) HSP 1 Score: 51.9878 bits (123), Expect = 5.098e-8 Identity = 19/46 (41.30%), Postives = 28/46 (60.87%), Query Frame = 1 Query: 415 DESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCR 552 +E C+IC S E D++ L C H FH+ C+ +WL +CP+CR Sbjct: 845 EEKCTICLSVLEEE-EDVRRLPCMHLFHQVCVDQWLTTNKKCPICR 889
BLAST of RING-type domain-containing protein vs. Ensembl Sea Lamprey
Match: rnf145b (ring finger protein 145b [Source:NCBI gene;Acc:327056]) HSP 1 Score: 50.8322 bits (120), Expect = 1.019e-7 Identity = 28/91 (30.77%), Postives = 44/91 (48.35%), Query Frame = 1 Query: 301 NINRLFQTGNFTNNLNRVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFST 573 N+ R Q G + + L R +I+++P + CSIC+ + + + CGH FH CL+KWL + CP+C V+ ST Sbjct: 404 NVWRRAQHG-WRSFLRRREAVSRINAMPIATEPQLRALQDVCSICYQDMESAV----LTPCGHYFHAGCLRKWLYLQETCPMCHQVLGGST 489
BLAST of RING-type domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000003771.1 (pep scaffold:Pmarinus_7.0:GL488469:4:5386:-1 gene:ENSPMAG00000003449.1 transcript:ENSPMAT00000003771.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 44.2838 bits (103), Expect = 1.389e-6 Identity = 20/60 (33.33%), Postives = 36/60 (60.00%), Query Frame = 1 Query: 424 CSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHE-CPVCRHVVSFSTKTNNNNDNE 600 C+IC E+ E +++L C H FH C+ WL Q+ + CPVC+ V S +++ ++++ Sbjct: 7 CAICLEEYEEG-ERLRVLPCAHAFHCKCVDPWLTQQRKNCPVCKRKVVRSHGSDSESESD 65
BLAST of RING-type domain-containing protein vs. Ensembl Sea Lamprey
Match: si:ch1073-392o20.1 (ring finger protein 122 [Source:HGNC Symbol;Acc:HGNC:21147]) HSP 1 Score: 43.5134 bits (101), Expect = 1.556e-6 Identity = 17/50 (34.00%), Postives = 31/50 (62.00%), Query Frame = 1 Query: 415 DESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVS 564 +++C++C +F E ++ + C H FH+ CL KWL ++ CP+C V+ Sbjct: 14 EQTCAVCLEDFREK-DELAVCPCKHAFHRKCLVKWLEIRNACPMCNKPVA 62
BLAST of RING-type domain-containing protein vs. Ensembl Sea Lamprey
Match: RNF115 (ring finger protein 115 [Source:HGNC Symbol;Acc:HGNC:18154]) HSP 1 Score: 45.8246 bits (107), Expect = 3.658e-6 Identity = 25/77 (32.47%), Postives = 36/77 (46.75%), Query Frame = 1 Query: 325 GNFTNNLNRVITDEQIDSLPTIDISN-CVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCR 552 G N E+I SLP I I+ +N C++C +++ ++ L C H FH C+ WL CPVCR Sbjct: 170 GQLDNTGPPPADKEKISSLPRITIAQEHLNCSMECAVCKEDYS-VGESVRQLPCLHLFHSNCIVPWLEMHDSCPVCR 245
BLAST of RING-type domain-containing protein vs. Ensembl Nematostella
Match: EDO45479 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RSU5]) HSP 1 Score: 46.595 bits (109), Expect = 4.733e-7 Identity = 23/70 (32.86%), Postives = 37/70 (52.86%), Query Frame = 1 Query: 358 TDEQIDSLPTIDISNCVNYDE----SCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRH 555 + E + +LP + +++ + E SC IC ++ E K + C H FH C+ WL + + CPVCRH Sbjct: 4 SKEAVQALPAVKVTD-KHLKELSTSSCPICLGDY-EKGESTKQMPCDHLFHPGCILPWLEKTNSCPVCRH 71
BLAST of RING-type domain-containing protein vs. Ensembl Nematostella
Match: EDO29210 (pep supercontig:ASM20922v1:NEMVEscaffold_1403:17060:20569:-1 gene:NEMVEDRAFT_v1g145359 transcript:EDO29210 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 46.595 bits (109), Expect = 4.780e-7 Identity = 23/70 (32.86%), Postives = 37/70 (52.86%), Query Frame = 1 Query: 358 TDEQIDSLPTIDISNCVNYDE----SCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRH 555 + E + +LP + +++ + E SC IC ++ E K + C H FH C+ WL + + CPVCRH Sbjct: 4 SKEAVQALPAVKVTD-KHLKELSTSSCPICLGDY-EKGESTKQMPCDHLFHPGCILPWLEKTNSCPVCRH 71
BLAST of RING-type domain-containing protein vs. Ensembl Nematostella
Match: EDO49300 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RH66]) HSP 1 Score: 45.4394 bits (106), Expect = 2.669e-6 Identity = 18/56 (32.14%), Postives = 31/56 (55.36%), Query Frame = 1 Query: 418 ESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNN 585 + C+IC +F ++ M CGH +H C+ KWL ++ CP+C+ ++ NN Sbjct: 82 DMCTICLEDFINK-EEVNMCKCGHAYHNKCIMKWLEVRNSCPICQR--GLQSRANN 134
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Match: zmp:0000000662 (RING finger protein 145-like [Source:NCBI gene;Acc:101166429]) HSP 1 Score: 59.3066 bits (142), Expect = 9.173e-10 Identity = 31/103 (30.10%), Postives = 51/103 (49.51%), Query Frame = 1 Query: 319 QTGNFTNNLNRVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNNNNDNEKRTFSSILN 627 Q+G + + L R ++I SLP +D+ CSICF + + + CGH FH CL+KWL + CP+C V + + ++E+ + S + N Sbjct: 500 QSG-WRSFLLRRAAAKKISSLPAASEQQLQQHDDVCSICFQDMSSAVVT----SCGHFFHGNCLRKWLYVQETCPMCHQPVQPAPSPQRDTESEQNSDSPVTN 597
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Match: znrf3 (zinc and ring finger 3 [Source:NCBI gene;Acc:101158028]) HSP 1 Score: 56.225 bits (134), Expect = 1.084e-8 Identity = 21/53 (39.62%), Postives = 33/53 (62.26%), Query Frame = 1 Query: 424 CSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTN 582 C+IC ++ + +++++ C H+FHK C+ WLLQ H CP CRH + K N Sbjct: 268 CAICLEKYMDG-EELRVIPCAHRFHKRCVDPWLLQHHTCPHCRHNIIEQKKGN 319
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Match: znrf3 (zinc and ring finger 3 [Source:NCBI gene;Acc:101158028]) HSP 1 Score: 56.225 bits (134), Expect = 1.192e-8 Identity = 21/53 (39.62%), Postives = 33/53 (62.26%), Query Frame = 1 Query: 424 CSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTN 582 C+IC ++ + +++++ C H+FHK C+ WLLQ H CP CRH + K N Sbjct: 243 CAICLEKYMDG-EELRVIPCAHRFHKRCVDPWLLQHHTCPHCRHNIIEQKKGN 294
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000013927.3 (ring finger protein 43 [Source:NCBI gene;Acc:101168566]) HSP 1 Score: 55.8398 bits (133), Expect = 1.324e-8 Identity = 21/65 (32.31%), Postives = 36/65 (55.38%), Query Frame = 1 Query: 424 CSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNNNNDNEKRTFSS 618 C+IC EF + ++++ C H+FHK C+ WLLQ CP+C H + + + N ++ + S Sbjct: 261 CAICLEEFQDG-QHLRIISCAHEFHKACVDPWLLQHRTCPLCMHNIMGTERQAQRNRAQQNSEQS 324
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000035375.1 (ring finger protein 43 [Source:NCBI gene;Acc:101168566]) HSP 1 Score: 55.8398 bits (133), Expect = 1.409e-8 Identity = 21/65 (32.31%), Postives = 36/65 (55.38%), Query Frame = 1 Query: 424 CSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVSFSTKTNNNNDNEKRTFSS 618 C+IC EF + ++++ C H+FHK C+ WLLQ CP+C H + + + N ++ + S Sbjct: 289 CAICLEEFQDG-QHLRIISCAHEFHKACVDPWLLQHRTCPLCMHNIMGTERQAQRNRAQQNSEQS 352
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000055935.1 (SMESG000055935.1) HSP 1 Score: 167.933 bits (424), Expect = 1.901e-53 Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1 Query: 286 MTRNSNINRLFQTGNFTNNLNRVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQ 528 MTRNSNINRLFQTGNFTNNLN VITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQ Sbjct: 1 MTRNSNINRLFQTGNFTNNLNLVITDEQIDSLPTIDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQ 81
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000036540.1 (SMESG000036540.1) HSP 1 Score: 55.4546 bits (132), Expect = 5.020e-9 Identity = 47/202 (23.27%), Postives = 89/202 (44.06%), Query Frame = 1 Query: 7 ATSNSSEFYCYKCDSYFTLSSIENPTCKYCRDSFVISSKEHRLIEPDNDEYEEFGD-DLIKVGKSNNRGRNESYIXXXXXXXXXXXXXXXXXIFMT-------RNSNINRLFQTGNFTNNLNRVITD-EQIDSLPT-------IDISNCVNYDESCSICFSEFTETIADIKMLHCGHQFHKTCLQKWLLQKHECPVCRHVVS 564 AT N+ ++C+KC+ +S ++ C C D F+ + +E D+D F I G + N +I + R ++ + R+ + +F +F N + R++ EQ P + ++ +++CSIC S++ E ++ L C H++H CL+ WL++ CP+CR +S Sbjct: 2 ATINTDNYFCHKCNRDVHIS--QDGKCVTCNDGFIERIESDNSMESDDDALNVFHIIRHIPSGSTTNETDGSFFITPRDHDNRNSVFGQLISNLFGGLLPLDFRSDPSDYIFSDQSFDNFVTRIMNQFEQSGPPPANEADIEKLQVTKITEANDTCSICLSDY-EVGDEVYELPCQHKYHVQCLKTWLIKHGTCPICRKDLS 200
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000003171.1 (SMESG000003171.1) HSP 1 Score: 55.4546 bits (132), Expect = 1.502e-8 Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 1 Query: 391 DISNCVNYDESCSICFSEFT--ETIADIKMLHCGHQFHKTCLQKWLLQKHECPVC 549 D+ +++ C+ICFSE + + +K C H FHK CL+KWLL KH CP+C Sbjct: 594 DVEEISRFEDVCAICFSELSSEDYNGPVKRTVCRHFFHKECLKKWLLIKHSCPMC 648
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000003171.1 (SMESG000003171.1) HSP 1 Score: 55.4546 bits (132), Expect = 1.552e-8 Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 1 Query: 391 DISNCVNYDESCSICFSEFT--ETIADIKMLHCGHQFHKTCLQKWLLQKHECPVC 549 D+ +++ C+ICFSE + + +K C H FHK CL+KWLL KH CP+C Sbjct: 583 DVEEISRFEDVCAICFSELSSEDYNGPVKRTVCRHFFHKECLKKWLLIKHSCPMC 637
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000059381.1 (SMESG000059381.1) HSP 1 Score: 53.1434 bits (126), Expect = 7.882e-8 Identity = 29/77 (37.66%), Postives = 43/77 (55.84%), Query Frame = 1 Query: 355 ITDEQIDSLPT---IDISNCVNYD------ESCSICFSEFTETIAD--IKMLHCGHQFHKTCLQKWLLQKHECPVCR 552 IT +++D++PT I +N +NY + C IC +F + D I+ML C H FH C++KWL CP+CR Sbjct: 521 ITRQELDTIPTRKFIKNNNDMNYKVTDDDKDRCMICLEDF---MPDEIIRMLRCSHDFHSICVEKWLKINRTCPLCR 594 The following BLAST results are available for this feature:
BLAST of RING-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of RING-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of RING-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 3
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30035284 ID=SMED30035284|Name=RING-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=762bpback to top protein sequence of SMED30035284-orf-1 >SMED30035284-orf-1 ID=SMED30035284-orf-1|Name=SMED30035284-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=213bp MSATSNSSEFYCYKCDSYFTLSSIENPTCKYCRDSFVISSKEHRLIEPDNback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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