SMED30035268

Overview
NameSMED30035268
Smed IDSMED30035268
Length (bp)968
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30035268 (SMED30035268) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30035268 (SMED30035268) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30035268 (SMED30035268) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30035268 (SMED30035268) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30035268

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
posterior sideSMED30035268SMESG000008500.1 dd_Smed_v4_6959_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior muscle cellSMED30035268SMESG000008500.1 dd_Smed_v4_6959_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30035268 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.014654:11442..12526 +4695
Homology
[Close]
BLAST of SMED30035268 vs. Ensembl Fly
Match: CG13392 (gene:FBgn0032033 transcript:FBtr0079720)

HSP 1 Score: 51.9878 bits (123), Expect = 1.340e-7
Identity = 42/152 (27.63%), Postives = 73/152 (48.03%), Query Frame = 3 
Query:  303 RPNEMVPQNGKIINILDISLIRRLRMI-NWVPQEDVWVLRKGSYLLCAFTVLSGSLTILNIRRFLQLQNQRLPTTLFGGLIVPVLLNGTAGEKYITSTIL-EGLYNCPLCMELRGSVLQAMFGSVVPLVLSFFICIPAAKLEKTYPVPKLTE 752
            +P+E+ P++  +I   D +L  + ++I +W    +VW LR    +L A    +G+    + R  L+L      +T    + VP +    A + +I   IL   L  CP+C+++R +  Q   G V P +L+ F     A    TY +P +TE
Sbjct:    7 KPDEL-PRDAVVIT-EDQALKYQWKIITSWDKIGEVWSLRYTPGILSALAAGTGAYINNHYRTKLRLGGHGRLSTYLPIVAVPAIFTMLAHKFFIQRPILLNPLGECPVCIQMRSAAFQTSLGIVYPTILAPFAAFLFATRCYTYRIPSITE 156
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BLAST of SMED30035268 vs. Ensembl Fly
Match: CG13392 (gene:FBgn0032033 transcript:FBtr0331995)

HSP 1 Score: 51.9878 bits (123), Expect = 1.340e-7
Identity = 42/152 (27.63%), Postives = 73/152 (48.03%), Query Frame = 3 
Query:  303 RPNEMVPQNGKIINILDISLIRRLRMI-NWVPQEDVWVLRKGSYLLCAFTVLSGSLTILNIRRFLQLQNQRLPTTLFGGLIVPVLLNGTAGEKYITSTIL-EGLYNCPLCMELRGSVLQAMFGSVVPLVLSFFICIPAAKLEKTYPVPKLTE 752
            +P+E+ P++  +I   D +L  + ++I +W    +VW LR    +L A    +G+    + R  L+L      +T    + VP +    A + +I   IL   L  CP+C+++R +  Q   G V P +L+ F     A    TY +P +TE
Sbjct:    7 KPDEL-PRDAVVIT-EDQALKYQWKIITSWDKIGEVWSLRYTPGILSALAAGTGAYINNHYRTKLRLGGHGRLSTYLPIVAVPAIFTMLAHKFFIQRPILLNPLGECPVCIQMRSAAFQTSLGIVYPTILAPFAAFLFATRCYTYRIPSITE 156
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BLAST of SMED30035268 vs. TrEMBL
Match: A0A068YDN9 (tRNA specific adenosine deaminase protein OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000801800 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.220e-15
Identity = 55/209 (26.32%), Postives = 101/209 (48.33%), Query Frame = 3 
Query:  309 NEMVPQNGKIINILDISLIRRLRMINWVPQEDVWVLRKGSYLLCAFTVLSGSLTILNIRRFLQLQNQRLPTTLFGGLIVPVLLNGTAG-----EKYITSTILEGLYN-------CPLCMELRGSVLQAMFGSVVPLVLSFFICIPAAKLEKTYPVPKLTEFYKYFDIIKLALNRGKYTFLTLGVLNFFYGGLISNRMMECNKRMDARDE 899
            NE+V ++ K+++             +W PQ  VW L  G+ +       S  + ++ +R+F  L +Q+    L G L+ PV++  +AG     + ++   ++ G          C  C+E+RGS +Q + G V P++ S   C  A+   +T+PVP+ T++ K F ++  A      T + L + N   GG I+ +M+E +  + A  E
Sbjct:    5 NEVVKKHRKVVS-------------SWHPQTSVWALAHGATMSALCVAGSSYMVLIRMRQFFNLYSQQY---LLGTLL-PVVILPSAGYIILQDAFVDRKLISGFSLPETRKSLCSTCLEIRGSFIQMVSGVVAPVLFSVSSCASASISYRTFPVPEFTKYRKVFGLVCKACGSFSSTLILLTLANAVVGGFITEKMVEQHALVSATRE 196
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BLAST of SMED30035268 vs. TrEMBL
Match: A0A068WB22 (tRNA specific adenosine deaminase protein OS=Echinococcus granulosus OX=6210 GN=EgrG_000801800 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.446e-15
Identity = 55/211 (26.07%), Postives = 101/211 (47.87%), Query Frame = 3 
Query:  309 NEMVPQNGKIINILDISLIRRLRMINWVPQEDVWVLRKGSYLLCAFTVLSGSLTILNIRRFLQLQNQRLPTTLFGGLIVPVLLNGTAG-----EKYITSTILEGLYN-------CPLCMELRGSVLQAMFGSVVPLVLSFFICIPAAKLEKTYPVPKLTEFYKYFDIIKLALNRGKYTFLTLGVLNFFYGGLISNRMMECNKRMDARDEYV 905
            NE+V ++ K+++             +W PQ  VW L  G+ +       S  + ++ +R+F  L +Q+    L G L+ PV+   + G     + ++   ++ G          C  C+E+RGS +Q + G V P++ S   C  A+   +T+PVP+LT++ K F ++  A      T + L + N   GG I+ +M+E +  + A  E +
Sbjct:    5 NEVVKEHRKVVS-------------SWHPQTSVWALAHGATMSALCVAGSSYMVLIRMRQFFNLYSQQY---LLGTLL-PVVALPSVGYIILQDVFVDRKLISGFSLPETRKSLCSTCLEIRGSFIQMVAGVVAPVLFSVSSCASASISYRTFPVPELTKYRKVFGLVCKACGSFSSTLILLTLANAVVGGFITEKMVEQHALVSATRETI 198
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BLAST of SMED30035268 vs. TrEMBL
Match: A0A433SMM1 (Uncharacterized protein OS=Elysia chlorotica OX=188477 GN=EGW08_021822 PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.018e-14
Identity = 62/206 (30.10%), Postives = 97/206 (47.09%), Query Frame = 3 
Query:  255 MEERSINPMFGVIVNRRPNEMVPQNGKIINILDISLIRRLRMINWVPQEDVWVLRKGSYLLCAFTVLSGSLTILNI-RRFLQLQNQRLPTTLFGGLIVPVLLNGTAGEKYITSTILEGLYNCPLCMELRGSVLQAMFGSVVPLVLSFFICIPAAKLEKTYPVPKLTEFYKYFDIIKLALNRGKYTFLTLGVLNFFYGGLISNRMME 869
            M+++ +  M G  V  +  E +PQN   +   ++  I+  R+  + PQE V V    SY + A T +SG L I N+ RR  +L   R   T    +++  L  G   E  I   IL G  +CP C+ ++G  LQA  G V P VLS   CIP A+   T   P       Y  +++    +  + F  L +LN + G  ++ R ++
Sbjct:    1 MDQQPVK-MRGEAVLFKRGERIPQNALPLQDAEVLSIQTSRINKFQPQEKVRVYHYSSYAVSATTSISG-LVIANVMRRNFRLGGLRKVLTYVPTVVISGLCAGAMQEILIKRQILLGKESCPPCVAVKGGCLQAGLGVVYPYVLSLLTCIPTARDYYTLQFPGRGSNSSYLQLLRQVSPKSSWMF-GLALLNIYVGSYVAVRQLQ 203
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BLAST of SMED30035268 vs. TrEMBL
Match: A0A0R3UQW6 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS10272 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.448e-14
Identity = 56/177 (31.64%), Postives = 87/177 (49.15%), Query Frame = 3 
Query:  366 RRLRMINWVPQEDVWVLRKGSYLLCAFTVLSGSLTIL-NIRRFLQL-QNQRLPTTLFGGLIVPVLLNGTAGEKYITSTILE-------GLYNCPLCMELRGSVLQAMFGSVVPLVLSFFICIPAAKLEKTYPVPKLTEFYKYFDIIKLALNRGKYTFLTLGVLNFFYGGLISNRMME 869
            +R  +  W PQ DVW L  G+ +  A  V   S +IL  +R+F  L   Q L  T+   +++P +    A + +I    +        G + C  C+E+RGS +QA  G   P +LS F C  A+   +T+PVP L +F K   +++ A      T + L + N F GG I+ RM +
Sbjct:   10 QRKTVSAWNPQTDVWALAHGTKI-SALCVAGSSFSILMRMRQFFSLFSQQHLLGTILPVVVLPSMGYIIANDIFIERPFVTRLSRPNIGQHFCSTCLEVRGSFIQATAGVFAPFLLSVFSCAAASISYRTFPVPDLGDFRKVLSLVRRAGGSLSSTLILLTLANAFVGGFITLRMAD 185
[Close]
BLAST of SMED30035268 vs. TrEMBL
Match: A0A0X3Q661 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=TR92340 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.208e-12
Identity = 56/183 (30.60%), Postives = 87/183 (47.54%), Query Frame = 3 
Query:  366 RRLRMI-NWVPQEDVWVLRKGSYLLCAFTVLSGSLTILNIRRFLQLQNQRLPTTLFGGLIVPVLLNGTAGEKYITSTILEGLYN------------CPLCMELRGSVLQAMFGSVVPLVLSFFICIPAAKLEKTYPVPKLTEFYKYFDIIKLALNRGKYTFLTLGVLNFFYGGLISNRMMECN 875
            R+L+ + +W PQ +VW L  G  +     + S    IL +R+F  L +Q+     F G I+PV+   T G    +  +++   +            C  C ELRGSVLQA  G V P +LS F C  AA   +TYP P L ++ K    I+ +      T   L + N  +GG ++  M++ +
Sbjct:   14 RQLQQLRHWQPQSEVWPLVHGPKMASVCVMASSFAIILRMRQFYNLFSQQH----FFGTIIPVVSLPTIGYLIASDLLVKRCLSSQFANYDSTRPICTTCYELRGSVLQAAMGVVFPYMLSMFACSAAAISYRTYPTPPLNDYRKMLLTIRRSCRALGTTLTLLTLANLAFGGWLTRSMLDTH 192
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BLAST of SMED30035268 vs. Ensembl Medaka
Match: tmem126a (transmembrane protein 126A [Source:ZFIN;Acc:ZDB-GENE-040426-1770])

HSP 1 Score: 54.6842 bits (130), Expect = 1.643e-8
Identity = 42/161 (26.09%), Postives = 74/161 (45.96%), Query Frame = 3 
Query:  390 VPQEDVWVLRKGSYLLCAFTVLSGSLTILNIRRFLQLQNQRLPTTLFGGLIVPVLLNGTAGEKYITSTILEGLYNCPLCMELRGSVLQAMFGSVVPLVLSFFICIPAAKLEKTYPVPKLTEFYKY-FDIIKLALNRGKYTFLTLGVLNFFYGGLISNRMME 869
            +P  D  +   G + L     L+G ++    RR L +   RL ++L    ++P L         ++  +L G  NCP C  +RG+++  + G+V P+VL+  + I  A    T P+P      +Y  D+ +  LN+ +   L    L  F+G  + +R  E
Sbjct:   24 LPDLDQKLFTLGPFYLAGNAGLAGLISNSLYRRALNIHAARLASSLPMA-VLPFLTTSALYSATVSQPLLSGDLNCPTCAMIRGALVGVVGGAVYPIVLALPLNIGLASRYSTAPLPGKGNLLRYCVDVSRPVLNKMRAVVL----LQAFFGTYLGSRNFE 179
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BLAST of SMED30035268 vs. Planmine SMEST
Match: SMESG000008500.1 (SMESG000008500.1)

HSP 1 Score: 457.603 bits (1176), Expect = 1.954e-164
Identity = 224/225 (99.56%), Postives = 225/225 (100.00%), Query Frame = 3 
Query:  243 MKGNMEERSINPMFGVIVNRRPNEMVPQNGKIINILDISLIRRLRMINWVPQEDVWVLRKGSYLLCAFTVLSGSLTILNIRRFLQLQNQRLPTTLFGGLIVPVLLNGTAGEKYITSTILEGLYNCPLCMELRGSVLQAMFGSVVPLVLSFFICIPAAKLEKTYPVPKLTEFYKYFDIIKLALNRGKYTFLTLGVLNFFYGGLISNRMMECNKRMDARDEYVYQKL 917
            MKGNMEERSINPMFGVIVNRRPNEMVPQNGKIINILDISLIRRLRMINWVPQEDVWVLRKGSYLLCAFTVLSGSLTILNIRRFLQLQNQRLPTTLFGGLIVPVLLNGTAGEKYITSTILEGLYNCPLCMELRGSVLQAMFGS+VPLVLSFFICIPAAKLEKTYPVPKLTEFYKYFDIIKLALNRGKYTFLTLGVLNFFYGGLISNRMMECNKRMDARDEYVYQKL
Sbjct:    1 MKGNMEERSINPMFGVIVNRRPNEMVPQNGKIINILDISLIRRLRMINWVPQEDVWVLRKGSYLLCAFTVLSGSLTILNIRRFLQLQNQRLPTTLFGGLIVPVLLNGTAGEKYITSTILEGLYNCPLCMELRGSVLQAMFGSIVPLVLSFFICIPAAKLEKTYPVPKLTEFYKYFDIIKLALNRGKYTFLTLGVLNFFYGGLISNRMMECNKRMDARDEYVYQKL 225
The following BLAST results are available for this feature:
BLAST of SMED30035268 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035268 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035268 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
CG133921.340e-727.63gene:FBgn0032033 transcript:FBtr0079720[more]
CG133921.340e-727.63gene:FBgn0032033 transcript:FBtr0331995[more]
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BLAST of SMED30035268 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035268 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035268 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035268 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035268 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A068YDN91.220e-1526.32tRNA specific adenosine deaminase protein OS=Echin... [more]
A0A068WB225.446e-1526.07tRNA specific adenosine deaminase protein OS=Echin... [more]
A0A433SMM11.018e-1430.10Uncharacterized protein OS=Elysia chlorotica OX=18... [more]
A0A0R3UQW61.448e-1431.64Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A0X3Q6612.208e-1230.60Uncharacterized protein OS=Schistocephalus solidus... [more]
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BLAST of SMED30035268 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035268 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035268 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035268 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30035268 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
tmem126a1.643e-826.09transmembrane protein 126A [Source:ZFIN;Acc:ZDB-GE... [more]
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BLAST of SMED30035268 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000008500.11.954e-16499.56SMESG000008500.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30035268 ID=SMED30035268|Name=SMED30035268|organism=Schmidtea mediterranea sexual|type=transcript|length=968bp
ATTTTTAGGATTTTCCATATTTTTTTAAACAGCGAACAATCAATGTGTAA
ATAATTTTAGTTAAAATTCAACTATATAGTTTCTGCGCGTCACTTTAAAT
AATCGAAAATAACCCTGCACGTTTTCAAAAAAATATATTTTCGTTTGCTT
TATACTGAAATTTTGAACGAGGCATTGCTATTGTCAATTTATTTAATTAT
TAATTTTAGATAAAAATTTAGTATAATAATAAATATATTCTCATGAAAGG
CAATATGGAGGAAAGAAGTATAAATCCAATGTTTGGTGTTATAGTCAATC
GACGCCCAAATGAAATGGTTCCACAAAATGGAAAGATAATTAATATTTTG
GATATATCTTTAATTCGTAGATTGAGAATGATAAACTGGGTTCCCCAAGA
AGATGTATGGGTTCTTCGAAAGGGCTCATATTTGTTGTGTGCATTTACGG
TCTTAAGTGGTTCATTGACAATACTAAATATTAGACGATTTCTTCAACTT
CAAAATCAAAGATTACCCACTACTTTGTTCGGAGGATTAATAGTCCCAGT
TTTACTTAACGGAACAGCAGGTGAAAAATATATTACGTCTACTATTCTCG
AAGGTTTATATAATTGTCCTTTGTGCATGGAATTAAGGGGTTCAGTTTTG
CAAGCAATGTTTGGGTCTGTTGTTCCTTTAGTCTTATCGTTTTTCATCTG
TATCCCAGCGGCAAAACTTGAAAAAACATATCCGGTTCCAAAGCTAACAG
AATTTTATAAATATTTCGACATCATCAAATTGGCATTGAATCGTGGAAAA
TATACATTTCTAACACTGGGAGTGTTAAATTTTTTTTACGGAGGGTTAAT
TTCAAATAGGATGATGGAATGCAACAAGAGAATGGATGCCAGAGATGAAT
ACGTTTATCAAAAATTATCTGAAATATCTACTAGCAGTAGCGATGATAAT
GAAATTAATTAGTCAAAT
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protein sequence of SMED30035268-orf-1

>SMED30035268-orf-1 ID=SMED30035268-orf-1|Name=SMED30035268-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=240bp
MKGNMEERSINPMFGVIVNRRPNEMVPQNGKIINILDISLIRRLRMINWV
PQEDVWVLRKGSYLLCAFTVLSGSLTILNIRRFLQLQNQRLPTTLFGGLI
VPVLLNGTAGEKYITSTILEGLYNCPLCMELRGSVLQAMFGSVVPLVLSF
FICIPAAKLEKTYPVPKLTEFYKYFDIIKLALNRGKYTFLTLGVLNFFYG
GLISNRMMECNKRMDARDEYVYQKLSEISTSSSDDNEIN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0000142posterior region of the whole animal
Vocabulary: INTERPRO
TermDefinition
IPR009801TMEM126
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009801Transmembrane protein 126PFAMPF07114TMEM126coord: 45..183
e-value: 3.0E-14
score: 52.8
IPR009801Transmembrane protein 126PANTHERPTHR16296UNCHARACTERIZED HYPOTHALAMUS PROTEIN HT007coord: 46..215
NoneNo IPR availablePANTHERPTHR16296:SF2TRANSMEMBRANE PROTEIN 126Acoord: 46..215
NoneNo IPR availableTMHMMTMhelixcoord: 55..77
NoneNo IPR availableTMHMMTMhelixcoord: 187..204
NoneNo IPR availableTMHMMTMhelixcoord: 92..114
NoneNo IPR availableTMHMMTMhelixcoord: 135..157