SOXP-2

Overview


Name	SOXP-2 (AFD29620.1)
Smed ID	SMED30035063
Length (bp)	2664

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SOXP-2 (SMED30035063) t-SNE clustered cells

Violin plots show distribution of expression levels for SOXP-2 (SMED30035063) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SOXP-2 (SMED30035063) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SOXP-2 (SMED30035063) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Expression Details

SOXP-2 ( SOXP-2 ) is expressed during Stage 2, Stage 3, Stage 4, Stage 5, Stage 6, Stage 7 and Stage 8 in the sigma neoblast, blastomere and neoblast

Click to see image symbols and abbreviations


Abbreviation or symbol	Definition
O	oral hemisphere
A	aboral hemisphere
D	dorsal
V	ventral
L	lateral
black arrowhead	embryonic pharynx
red arrowhead	definitive pharynx
black arrows	primitive gut
yellow arrows	primitive ectoderm cells
cyan arrows	brain
cyan arrowheads	nerve cords
blue arrowheads	eye progenitors (trail cells)
purple arrowheads	eyes
scale bar	100 µm

Anatomical Expression

PAGE et. al., 2020

SMED30035063

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 40

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30035063	SMESG000074761.1	SmedASXL_013986	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30035063	SMESG000074761.1	SmedASXL_013986	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
nervous system	SMED30035063	SMESG000074761.1	dd_Smed_v4_8483_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30035063	SMESG000074761.1	dd_Smed_v4_8483_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30035063	SMESG000074761.1	dd_Smed_v4_8483_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30035063	SMESG000074761.1	dd_Smed_v4_8483_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
sigma neoblast	SMED30035063	SMESG000074761.1	SMED30035063	smed_20140614	PMID:30194301 Mihaylova et al., 2018
sigma neoblast	SMED30035063	SMESG000074761.1	JQ425152	smed_ncbi_20200123	PMID:30194301 Mihaylova et al., 2018
neoblast	SMED30035063	SMESG000074761.1	JQ425152.1	smed_ncbi_20200123	PMID:28072387 Davies et al., 2017
neoblast	SMED30035063	SMESG000074761.1	JQ425152.1	smed_ncbi_20200123	PMID:28072387 Davies et al., 2017
neoblast	SMED30035063	SMESG000074761.1	JQ425152.1	smed_ncbi_20200123	PMID:28072387 Davies et al., 2017
blastomere	SMED30035063	SMESG000074761.1	JQ425152.1	smed_ncbi_20200123	PMID:28072387 Davies et al., 2017
blastomere	SMED30035063	SMESG000074761.1	JQ425152.1	smed_ncbi_20200123	PMID:28072387 Davies et al., 2017
neoblast	SMED30035063	SMESG000074761.1	SMED30035063	smed_20140614	PMID:28072387 Davies et al., 2017
neoblast	SMED30035063	SMESG000074761.1	SMED30035063	smed_20140614	PMID:28072387 Davies et al., 2017
neoblast	SMED30035063	SMESG000074761.1	SMED30035063	smed_20140614	PMID:28072387 Davies et al., 2017
blastomere	SMED30035063	SMESG000074761.1	SMED30035063	smed_20140614	PMID:28072387 Davies et al., 2017
blastomere	SMED30035063	SMESG000074761.1	SMED30035063	smed_20140614	PMID:28072387 Davies et al., 2017
neoblast	SMED30035063	SMESG000074761.1	AFD29620.1	smed_ncbi_20200123	PMID:28072387 Davies et al., 2017
neoblast	SMED30035063	SMESG000074761.1	AFD29620.1	smed_ncbi_20200123	PMID:28072387 Davies et al., 2017
neoblast	SMED30035063	SMESG000074761.1	AFD29620.1	smed_ncbi_20200123	PMID:28072387 Davies et al., 2017
blastomere	SMED30035063	SMESG000074761.1	AFD29620.1	smed_ncbi_20200123	PMID:28072387 Davies et al., 2017
blastomere	SMED30035063	SMESG000074761.1	AFD29620.1	smed_ncbi_20200123	PMID:28072387 Davies et al., 2017
gamma neoblast	SMED30035063	SMESG000074761.1	JQ425152	smed_ncbi_20200123	PMID:25017721 van Wolfswinkel et al., 2014
head region	SMED30035063	SMESG000074761.1	JQ425152	smed_ncbi_20200123	PMID:25017721 van Wolfswinkel et al., 2014
prepharyngeal region	SMED30035063	SMESG000074761.1	JQ425152	smed_ncbi_20200123	PMID:25017721 van Wolfswinkel et al., 2014
parapharyngeal region	SMED30035063	SMESG000074761.1	JQ425152	smed_ncbi_20200123	PMID:25017721 van Wolfswinkel et al., 2014
tail region	SMED30035063	SMESG000074761.1	JQ425152	smed_ncbi_20200123	PMID:25017721 van Wolfswinkel et al., 2014
parenchyma	SMED30035063	SMESG000074761.1	JQ425152	smed_ncbi_20200123	PMID:25017721 van Wolfswinkel et al., 2014
sigma neoblast	SMED30035063	SMESG000074761.1	JQ425152	smed_ncbi_20200123	PMID:25017721 van Wolfswinkel et al., 2014
sigma neoblast	SMED30035063	SMESG000074761.1	JQ425152	smed_ncbi_20200123	PMID:25017721 van Wolfswinkel et al., 2014
zeta neoblast	SMED30035063	SMESG000074761.1	dd_Smed_v4_8483_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
neoblast	SMED30035063	SMESG000074761.1	SMED_25793_V2_2	GPL14150	PMID:22385657 Wagner et al., 2012
neoblast	SMED30035063	SMESG000074761.1	SMED_25793_V2_2	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012
neoblast	SMED30035063	SMESG000074761.1	SMED_03191_V2_1	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012
neoblast	SMED30035063	SMESG000074761.1	SMED_03191_V2_1	GPL14150	PMID:22385657 Wagner et al., 2012
neoblast	SMED30035063	SMESG000074761.1	SMED_25793_V2_1	GPL14150	PMID:22385657 Wagner et al., 2012
neoblast	SMED30035063	SMESG000074761.1	SMED_25793_V2_1	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012
neoblast	SMED30035063	SMESG000074761.1	SMED30035063	smed_20140614	PMID:22385657 Wagner et al., 2012
neoblast	SMED30035063	SMESG000074761.1	SMED30035063	smed_20140614	PMID:22385657 Wagner et al., 2012

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of SOXP-2 vs. Ensembl Human
Match: SOX12 (SRY-box transcription factor 12 [Source:HGNC Symbol;Acc:HGNC:11198])

HSP 1 Score: 53.1434 bits (126), Expect = 9.902e-7
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 2

Query:  458 HITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            HI  RP+N+FM++S+H RR ++  + D  N+EISK LG+ W  +  + K  +  EA++L + H
Sbjct:   39 HIK-RPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKH 100

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BLAST of SOXP-2 vs. Ensembl Human
Match: SOX6 (SRY-box transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:16421])

HSP 1 Score: 54.299 bits (129), Expect = 1.008e-6
Identity = 32/94 (34.04%), Postives = 52/94 (55.32%), Query Frame = 2

Query:  389 NLTDDKLSKPYSTVTESRKKR--------KKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            +LT  + ++  +TV E+R  R        + HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W ++    K  Y  E  +L+ +H
Sbjct:  569 DLTRPEDAEGGATVAEARVYRDARGRASSEPHIK-RPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIH 661

[Close]

Query:  389 NLTDDKLSKPYSTVTESRKKR--------KKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            +LT  + ++  +TV E+R  R        + HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W ++    K  Y  E  +L+ +H
Sbjct:  569 DLTRPEDAEGGATVAEARVYRDARGRASSEPHIK-RPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIH 661

[Close]

BLAST of SOXP-2 vs. Ensembl Human
Match: SOX6 (SRY-box transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:16421])

HSP 1 Score: 53.9138 bits (128), Expect = 1.413e-6
Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 2

Query:  422 STVTESRKKR--------KKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            +TV E+R  R        + HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W ++    K  Y  E  +L+ +H
Sbjct:  573 ATVAEARVYRDARGRASSEPHIK-RPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIH 654

[Close]

Query:  422 STVTESRKKR--------KKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            +TV E+R  R        + HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W ++    K  Y  E  +L+ +H
Sbjct:  573 ATVAEARVYRDARGRASSEPHIK-RPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIH 654

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BLAST of SOXP-2 vs. Ensembl Celegans
Match: sem-2 (Transcription factor sem-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8T3B9])

HSP 1 Score: 54.299 bits (129), Expect = 2.476e-7
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 2

Query:  416 PYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            PYS  T   KK   HI  RP+N+FM++S+  RR +     D  N+EISK LG  W ++    K+ +  EA++L + H
Sbjct:   79 PYSDATNC-KKSSNHIK-RPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAEAERLRVCH 153

[Close]

Query:  416 PYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            PYS  T   KK   HI  RP+N+FM++S+  RR +     D  N+EISK LG  W ++    K+ +  EA++L + H
Sbjct:   79 PYSDATNC-KKSSNHIK-RPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAEAERLRVCH 153

[Close]

BLAST of SOXP-2 vs. Ensembl Celegans
Match: egl-13 (Transcription factor egl-13 [Source:UniProtKB/Swiss-Prot;Acc:Q23045])

HSP 1 Score: 52.7582 bits (125), Expect = 7.107e-7
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 2

Query:  440 RKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            + K   HI  RP+N+FM+++R  RR +L  + D  NS ISK+LG  W  +  + K  Y  E  +L+ LH
Sbjct:  274 QAKSPNHIK-RPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLH 341

[Close]

BLAST of SOXP-2 vs. Ensembl Celegans
Match: egl-13 (Transcription factor egl-13 [Source:UniProtKB/Swiss-Prot;Acc:Q23045])

HSP 1 Score: 52.373 bits (124), Expect = 7.395e-7
Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = 2

Query:  422 STVTESRKKRKK--HITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            S V   R + K   HI  RP+N+FM+++R  RR +L  + D  NS ISK+LG  W  +  + K  Y  E  +L+ LH
Sbjct:  160 SEVATPRPQAKSPNHIK-RPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLH 235

[Close]

BLAST of SOXP-2 vs. Ensembl Celegans
Match: egl-13 (Transcription factor egl-13 [Source:UniProtKB/Swiss-Prot;Acc:Q23045])

HSP 1 Score: 53.1434 bits (126), Expect = 7.593e-7
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 2

Query:  440 RKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            + K   HI  RP+N+FM+++R  RR +L  + D  NS ISK+LG  W  +  + K  Y  E  +L+ LH
Sbjct:  322 QAKSPNHIK-RPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLH 389

[Close]

BLAST of SOXP-2 vs. Ensembl Fly
Match: Sox14 (gene:FBgn0005612 transcript:FBtr0072158)

HSP 1 Score: 59.3066 bits (142), Expect = 1.248e-8
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 2

Query:  410 SKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            S PYS  T ++K    HI  RP+N+FM++S+  RR +     D  N+EISK LG+ W  +    K  Y  EA+KL  LH
Sbjct:  170 STPYSDATRTKKHSPGHIK-RPMNAFMVWSQMERRKICERTPDLHNAEISKELGRRWQLLSKDDKQPYIIEAEKLRKLH 247

[Close]

BLAST of SOXP-2 vs. Ensembl Fly
Match: Sox14 (gene:FBgn0005612 transcript:FBtr0343282)

HSP 1 Score: 59.3066 bits (142), Expect = 1.248e-8
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 2

Query:  410 SKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            S PYS  T ++K    HI  RP+N+FM++S+  RR +     D  N+EISK LG+ W  +    K  Y  EA+KL  LH
Sbjct:  170 STPYSDATRTKKHSPGHIK-RPMNAFMVWSQMERRKICERTPDLHNAEISKELGRRWQLLSKDDKQPYIIEAEKLRKLH 247

[Close]

BLAST of SOXP-2 vs. Ensembl Fly
Match: Sox14 (gene:FBgn0005612 transcript:FBtr0072157)

HSP 1 Score: 59.3066 bits (142), Expect = 1.248e-8
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 2

Query:  410 SKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            S PYS  T ++K    HI  RP+N+FM++S+  RR +     D  N+EISK LG+ W  +    K  Y  EA+KL  LH
Sbjct:  170 STPYSDATRTKKHSPGHIK-RPMNAFMVWSQMERRKICERTPDLHNAEISKELGRRWQLLSKDDKQPYIIEAEKLRKLH 247

[Close]

BLAST of SOXP-2 vs. Ensembl Fly
Match: Sox100B (gene:FBgn0024288 transcript:FBtr0085735)

HSP 1 Score: 51.9878 bits (123), Expect = 1.896e-6
Identity = 26/67 (38.81%), Postives = 43/67 (64.18%), Query Frame = 2

Query:  446 KRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            ++K+HI  RP+N+FM++++  RR +   +    NSE+SK LGKLW N+  + K  +   A+KL + H
Sbjct:   72 RKKEHIK-RPMNAFMVWAQAARRVMSKQYPHLQNSELSKSLGKLWKNLKDSDKKPFMEFAEKLRMTH 137

[Close]

BLAST of SOXP-2 vs. Ensembl Fly
Match: Sox102F (gene:FBgn0039938 transcript:FBtr0089252)

HSP 1 Score: 51.2174 bits (121), Expect = 3.551e-6
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 2

Query:  452 KKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            K HI  RP+N+FM++++  RR +L    D  NS ISK+LG  W  +    K  Y  E  +L+ LH
Sbjct:  382 KPHIK-RPMNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNADKQPYYEEQSRLSKLH 445

[Close]

BLAST of SOXP-2 vs. Ensembl Zebrafish
Match: sox13 (SRY-box transcription factor 13 [Source:ZFIN;Acc:ZDB-GENE-100519-1])

HSP 1 Score: 53.5286 bits (127), Expect = 8.909e-7
Identity = 28/75 (37.33%), Postives = 41/75 (54.67%), Query Frame = 2

Query:  422 STVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
             +  ESR     HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W ++    K  Y  E  +L+  H
Sbjct:  396 GSFGESRTPSSGHIK-RPMNAFMVWAKDERRRILQAFPDMHNSSISKILGSRWKSMSNQEKQPYYEEQARLSRQH 469

[Close]

BLAST of SOXP-2 vs. Ensembl Zebrafish
Match: sox13 (SRY-box transcription factor 13 [Source:ZFIN;Acc:ZDB-GENE-100519-1])

HSP 1 Score: 53.1434 bits (126), Expect = 1.149e-6
Identity = 28/75 (37.33%), Postives = 41/75 (54.67%), Query Frame = 2

Query:  422 STVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
             +  ESR     HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W ++    K  Y  E  +L+  H
Sbjct:  366 GSFGESRTPSSGHIK-RPMNAFMVWAKDERRRILQAFPDMHNSSISKILGSRWKSMSNQEKQPYYEEQARLSRQH 439

[Close]

Query:  422 STVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
             +  ESR     HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W ++    K  Y  E  +L+  H
Sbjct:  366 GSFGESRTPSSGHIK-RPMNAFMVWAKDERRRILQAFPDMHNSSISKILGSRWKSMSNQEKQPYYEEQARLSRQH 439

[Close]

BLAST of SOXP-2 vs. Ensembl Zebrafish
Match: sox12 (SRY-box transcription factor 12 [Source:ZFIN;Acc:ZDB-GENE-040724-33])

HSP 1 Score: 52.373 bits (124), Expect = 1.465e-6
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 2

Query:  470 RPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            RP+N+FM++S+  RR ++  + D  N+EISK LGK W  +P   K  +  EA++L + H
Sbjct:   55 RPMNAFMVWSQIERRKIMEQWPDMHNAEISKRLGKRWKLLPDYEKIPFIKEAERLRLKH 113

[Close]

BLAST of SOXP-2 vs. Ensembl Zebrafish
Match: FQ377628.1 (pep chromosome:GRCz11:2:22564928:22575851:-1 gene:ENSDARG00000111969.1 transcript:ENSDART00000182932.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FQ377628.1)

HSP 1 Score: 51.2174 bits (121), Expect = 1.616e-6
Identity = 46/118 (38.98%), Postives = 69/118 (58.47%), Query Frame = 2

Query:  443 KKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILHSXXXXXXXXXXXXXXXXYLTKCPINSTPLSSNS-YESIQDINSVTDTLQN 793
            K+  +HI  RP+N+FM++SR  RR + +      NSEISK LG  W  +  + K  Y +EAK+L   H +E P+YKY+P++K K  L K  + S PL   S  E  +D++S +   Q+
Sbjct:    8 KQPMEHIK-RPMNAFMVWSRGQRRQMALENPKMHNSEISKRLGAEWKRLSDSEKRPYIDEAKRLRAQHMREHPDYKYRPRRKPKGLLRKDMVLSLPLVGQSDSEKPRDVHSSSAAAQH 124

[Close]

BLAST of SOXP-2 vs. Ensembl Xenopus
Match: sox7 (SRY-box 7 [Source:NCBI gene;Acc:549080])

HSP 1 Score: 56.6102 bits (135), Expect = 9.151e-8
Identity = 29/93 (31.18%), Postives = 49/93 (52.69%), Query Frame = 2

Query:  368 WMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            W   L  +  D+ LS   S     R+K  +    RP+N+FM++++  R+ + +   D  N+E+SK+LGK W  +    K  Y  EA++L + H
Sbjct:   10 WTEGLDCSPIDEDLSDGLSPHRSPREKGSETRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALSPAQKRPYVEEAERLRVQH 102

[Close]

BLAST of SOXP-2 vs. Ensembl Xenopus
Match: sox17b.3 (SRY-box 17 alpha [Source:NCBI gene;Acc:395066])

HSP 1 Score: 53.5286 bits (127), Expect = 1.064e-6
Identity = 31/94 (32.98%), Postives = 53/94 (56.38%), Query Frame = 2

Query:  365 QWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            QW   + N+L + KL K  +    SR K +  I  RP+N+FM++++  R+ +     D  N+E+SK+LGK W ++    K  +  EA++L + H
Sbjct:   31 QWAEPM-NSLGEGKL-KSDAGSANSRGKAEARIR-RPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKSLTLASKRPFVEEAERLRVQH 121

[Close]

BLAST of SOXP-2 vs. Ensembl Xenopus
Match: sox17b.3 (SRY-box 17 alpha [Source:NCBI gene;Acc:395066])

HSP 1 Score: 53.1434 bits (126), Expect = 1.161e-6
Identity = 31/94 (32.98%), Postives = 53/94 (56.38%), Query Frame = 2

Query:  365 QWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            QW   + N+L + KL K  +    SR K +  I  RP+N+FM++++  R+ +     D  N+E+SK+LGK W ++    K  +  EA++L + H
Sbjct:   31 QWAEPM-NSLGEGKL-KSDAGSANSRGKAEARIR-RPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKSLTLASKRPFVKEAERLRVQH 121

[Close]

BLAST of SOXP-2 vs. Ensembl Xenopus
Match: sox17b.3 (SRY-box 17 alpha [Source:NCBI gene;Acc:395066])

HSP 1 Score: 53.1434 bits (126), Expect = 1.214e-6
Identity = 31/94 (32.98%), Postives = 53/94 (56.38%), Query Frame = 2

Query:  365 QWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            QW   + N+L + KL K  +    SR K +  I  RP+N+FM++++  R+ +     D  N+E+SK+LGK W ++    K  +  EA++L + H
Sbjct:   31 QWAEPM-NSLGEGKL-KSDAGSANSRGKAEARIR-RPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKSLTLASKRPFVEEAERLRVQH 121

[Close]

BLAST of SOXP-2 vs. Ensembl Xenopus
Match: spidr (scaffold protein involved in DNA repair [Source:Xenbase;Acc:XB-GENE-5813435])

HSP 1 Score: 53.5286 bits (127), Expect = 1.721e-6
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 2

Query:  431 TESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            T  R   + HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W  +    K  Y  E  +L+ +H
Sbjct:  559 TRGRSSSEPHIK-RPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNQEKQPYYEEQARLSKIH 629

[Close]

BLAST of SOXP-2 vs. Ensembl Mouse
Match: Sox12 (SRY (sex determining region Y)-box 12 [Source:MGI Symbol;Acc:MGI:98360])

HSP 1 Score: 53.1434 bits (126), Expect = 8.226e-7
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 2

Query:  458 HITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            HI  RP+N+FM++S+H RR ++  + D  N+EISK LG+ W  +  + K  +  EA++L + H
Sbjct:   39 HIK-RPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKH 100

[Close]

Query:  458 HITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            HI  RP+N+FM++S+H RR ++  + D  N+EISK LG+ W  +  + K  +  EA++L + H
Sbjct:   39 HIK-RPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKH 100

[Close]

BLAST of SOXP-2 vs. Ensembl Mouse
Match: Sox6 (SRY (sex determining region Y)-box 6 [Source:MGI Symbol;Acc:MGI:98368])

HSP 1 Score: 53.9138 bits (128), Expect = 9.964e-7
Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 2

Query:  422 STVTESRKKR--------KKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            +TV E+R  R        + HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W ++    K  Y  E  +L+ +H
Sbjct:  557 ATVAEARVYRDARGRASSEPHIK-RPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIH 638

[Close]

BLAST of SOXP-2 vs. Ensembl Mouse
Match: Sox6 (SRY (sex determining region Y)-box 6 [Source:MGI Symbol;Acc:MGI:98368])

HSP 1 Score: 53.9138 bits (128), Expect = 1.059e-6
Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 2

Query:  422 STVTESRKKR--------KKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            +TV E+R  R        + HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W ++    K  Y  E  +L+ +H
Sbjct:  599 ATVAEARVYRDARGRASSEPHIK-RPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIH 680

[Close]

Query:  422 STVTESRKKR--------KKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            +TV E+R  R        + HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W ++    K  Y  E  +L+ +H
Sbjct:  599 ATVAEARVYRDARGRASSEPHIK-RPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIH 680

[Close]

BLAST of SOXP-2 vs. UniProt/SwissProt
Match: sp|P40656|SOX14_DROME (Putative transcription factor SOX-14 OS=Drosophila melanogaster OX=7227 GN=Sox14 PE=2 SV=3)

HSP 1 Score: 59.3066 bits (142), Expect = 1.251e-7
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 2

Query:  410 SKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            S PYS  T ++K    HI  RP+N+FM++S+  RR +     D  N+EISK LG+ W  +    K  Y  EA+KL  LH
Sbjct:  170 STPYSDATRTKKHSPGHIK-RPMNAFMVWSQMERRKICERTPDLHNAEISKELGRRWQLLSKDDKQPYIIEAEKLRKLH 247

[Close]

BLAST of SOXP-2 vs. UniProt/SwissProt
Match: sp|Q28GD5|SOX7_XENTR (Transcription factor Sox-7 OS=Xenopus tropicalis OX=8364 GN=sox7 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 4.848e-7
Identity = 29/93 (31.18%), Postives = 49/93 (52.69%), Query Frame = 2

Query:  368 WMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            W   L  +  D+ LS   S     R+K  +    RP+N+FM++++  R+ + +   D  N+E+SK+LGK W  +    K  Y  EA++L + H
Sbjct:   10 WTEGLDCSPIDEDLSDGLSPHRSPREKGSETRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALSPAQKRPYVEEAERLRVQH 102

[Close]

BLAST of SOXP-2 vs. UniProt/SwissProt
Match: sp|O42342|SOX7_XENLA (Transcription factor Sox-7 OS=Xenopus laevis OX=8355 GN=sox7 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 8.990e-7
Identity = 29/93 (31.18%), Postives = 48/93 (51.61%), Query Frame = 2

Query:  368 WMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            W   L  +  D  LS   S     R+K  +    RP+N+FM++++  R+ + +   D  N+E+SK+LGK W  +    K  Y  EA++L + H
Sbjct:   10 WTESLDCSPMDGDLSDGLSPHRSPREKGSETRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALSPAQKRPYVEEAERLRVQH 102

[Close]

BLAST of SOXP-2 vs. UniProt/SwissProt
Match: sp|Q8T3B9|SEM2_CAEEL (Transcription factor sem-2 OS=Caenorhabditis elegans OX=6239 GN=sem-2 PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 3.149e-6
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 2

Query:  416 PYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            PYS  T   KK   HI  RP+N+FM++S+  RR +     D  N+EISK LG  W ++    K+ +  EA++L + H
Sbjct:   79 PYSDATNC-KKSSNHIK-RPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAEAERLRVCH 153

[Close]

BLAST of SOXP-2 vs. UniProt/SwissProt
Match: sp|O15370|SOX12_HUMAN (Transcription factor SOX-12 OS=Homo sapiens OX=9606 GN=SOX12 PE=2 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 4.755e-6
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 2

Query:  458 HITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            HI  RP+N+FM++S+H RR ++  + D  N+EISK LG+ W  +  + K  +  EA++L + H
Sbjct:   39 HIK-RPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKH 100

[Close]

BLAST of SOXP-2 vs. TrEMBL
Match: H9CXU9 (SOXP-2 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 926.391 bits (2393), Expect = 0.000e+0
Identity = 542/542 (100.00%), Postives = 542/542 (100.00%), Query Frame = 2

Query:  209 MELNYSLNDNNFNLQLESESLTYFDLCQKCSAYQNSLRDWMKHLVDRHPLPIQWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILHSXXXXXXXXXXXXXXXXYLTKCPINSTPLSSNSYESIQDINSVTDTLQNSSNNLQKESNPTSVSSYGSNQECNNSFKNHSVQSSNFPKEINHKPSRKIEKQSCKISSNQIMDDSEGAESSPSSFKNTIKNEIYSSYSPFLNEXXXXXXXXXXXXXXNNVSKHTSDSIITNSPIREEIVLEXXXXXXXXXXXXYRHVFQRXXXXXXXXXXXXXIVTEKVDEQKDLPPSRINIRYVKINKLPIQTKSDFPLTGYFQNFNNDSNLHFQSSIHALNTTLTPDLSVKREATVNNSMTDYINRKRTNVDPLIIDDIFENEQFEDEEVLXXXXXXXXXXXXXXXKSPNFKISTGSSTLSDNPYKEQFCSSPFHLSETDTQPIPVQRLPAIGSWLKSNYSEFMI 1834
            MELNYSLNDNNFNLQLESESLTYFDLCQKCSAYQNSLRDWMKHLVDRHPLPIQWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILHSKEFPEYKYQPKKKKKQYLTKCPINSTPLSSNSYESIQDINSVTDTLQNSSNNLQKESNPTSVSSYGSNQECNNSFKNHSVQSSNFPKEINHKPSRKIEKQSCKISSNQIMDDSEGAESSPSSFKNTIKNEIYSSYSPFLNESHSILSDLSYSSSLNNVSKHTSDSIITNSPIREEIVLENNQPSQQNNINNYRHVFQRTSTLSNSLLTPLTIVTEKVDEQKDLPPSRINIRYVKINKLPIQTKSDFPLTGYFQNFNNDSNLHFQSSIHALNTTLTPDLSVKREATVNNSMTDYINRKRTNVDPLIIDDIFENEQFEDEEVLNFDNPDNNNSSPWSFKSPNFKISTGSSTLSDNPYKEQFCSSPFHLSETDTQPIPVQRLPAIGSWLKSNYSEFMI
Sbjct:    1 MELNYSLNDNNFNLQLESESLTYFDLCQKCSAYQNSLRDWMKHLVDRHPLPIQWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILHSKEFPEYKYQPKKKKKQYLTKCPINSTPLSSNSYESIQDINSVTDTLQNSSNNLQKESNPTSVSSYGSNQECNNSFKNHSVQSSNFPKEINHKPSRKIEKQSCKISSNQIMDDSEGAESSPSSFKNTIKNEIYSSYSPFLNESHSILSDLSYSSSLNNVSKHTSDSIITNSPIREEIVLENNQPSQQNNINNYRHVFQRTSTLSNSLLTPLTIVTEKVDEQKDLPPSRINIRYVKINKLPIQTKSDFPLTGYFQNFNNDSNLHFQSSIHALNTTLTPDLSVKREATVNNSMTDYINRKRTNVDPLIIDDIFENEQFEDEEVLNFDNPDNNNSSPWSFKSPNFKISTGSSTLSDNPYKEQFCSSPFHLSETDTQPIPVQRLPAIGSWLKSNYSEFMI 542

[Close]

BLAST of SOXP-2 vs. TrEMBL
Match: A0A564XWJ0 (HMG box domain-containing protein (Fragment) OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS656 PE=4 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.277e-34
Identity = 61/127 (48.03%), Postives = 89/127 (70.08%), Query Frame = 2

Query:  269 LTYFDLCQKCS-AYQNSLRDWMKHLVDRHPLPIQWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            L Y + C++C  A  + +  ++ HL + H +P +W SD A+ LT D+  KPY+T+  +RKKR+K  TPRPLNSFMIF++H+RRNVL  F  AS+S IS+LLG+ W+ IP  I++ YD EA +L+ +H
Sbjct:   10 LHYMNACKQCVIAIDDGVESFITHLTNEHAIPTEWPSDRASRLTGDEAKKPYTTIAATRKKRRKLTTPRPLNSFMIFAQHIRRNVLAIFETASSSNISRLLGQAWSKIPKEIRAAYDEEAARLSKIH 136

[Close]

BLAST of SOXP-2 vs. TrEMBL
Match: A0A0R3TTK2 (HMG box domain-containing protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS11040 PE=4 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.407e-32
Identity = 61/124 (49.19%), Postives = 89/124 (71.77%), Query Frame = 2

Query:  275 YFDLCQKCSAYQNSLRDWMKHLVDRHPLPIQWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            + + C  C + QNSL+ W++HL D H LP +W SD A  LT    +KPY+T+TES+K+R+K   PRPLNSFM+F++H+RRNVL   ++ASNS +S+ LG +W ++P ++K+ YD EA KL  +H
Sbjct:    2 WMEDCVDCVSAQNSLQAWIRHLTDFHALPTEWPSDRALRLTGVAATKPYTTITESKKRRRKDSVPRPLNSFMLFAQHIRRNVLRIHNEASNSVLSQQLGIVWRSVPRSVKNRYDEEAAKLVKIH 125

[Close]

BLAST of SOXP-2 vs. TrEMBL
Match: A0A0R3SCN8 (HMG box domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS2370 PE=4 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.285e-32
Identity = 61/124 (49.19%), Postives = 88/124 (70.97%), Query Frame = 2

Query:  275 YFDLCQKCSAYQNSLRDWMKHLVDRHPLPIQWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            + D C  C + Q+SL+ W++HL D H LP +W SD A  LT    +KPY+T+TES+K+R+K   PRPLNSFM+F++H+RRNVL   ++ASNS +S+ LG +W ++P  +K+ YD EA KL  +H
Sbjct:    2 WMDDCVDCVSAQSSLQTWIRHLTDFHALPTEWPSDRALRLTGVAATKPYTTITESKKRRRKDSVPRPLNSFMLFAQHIRRNVLRIHNEASNSVLSQQLGIVWRSVPRIVKNRYDEEAAKLVKIH 125

[Close]

BLAST of SOXP-2 vs. TrEMBL
Match: A0A183TH27 (HMG box domain-containing protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS15775 PE=4 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.680e-32
Identity = 61/120 (50.83%), Postives = 85/120 (70.83%), Query Frame = 2

Query:  287 CQKCSAYQNSLRDWMKHLVDRHPLPIQWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            C+ C A + S+R W  HLVDRH +P +W S+ A+ L  D    PY+ VTESRKKR     PRPLNSFM+F++H+RRN+L+ F   SN+E+S+LLG+LW+ +P  IK+ +D EA +L+ LH
Sbjct:   48 CEDCHASKQSVRQWASHLVDRHTVPSEWPSERASRLPADSTRTPYTYVTESRKKRMPGAIPRPLNSFMLFAQHIRRNILLAFDGVSNAELSRLLGELWSALPRPIKTQFDEEATRLSKLH 167

[Close]

BLAST of SOXP-2 vs. Ensembl Cavefish
Match: sox6 (SRY-box transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-081120-6])

HSP 1 Score: 52.373 bits (124), Expect = 2.001e-6
Identity = 26/72 (36.11%), Postives = 41/72 (56.94%), Query Frame = 2

Query:  431 TESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            +  R   + HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W ++    K  Y  E  +L+ +H
Sbjct:  568 SRGRNPNEPHIK-RPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIH 638

[Close]

BLAST of SOXP-2 vs. Ensembl Cavefish
Match: sox12 (transcription factor SOX-4-like [Source:NCBI gene;Acc:103039194])

HSP 1 Score: 51.9878 bits (123), Expect = 2.013e-6
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 2

Query:  470 RPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            RP+N+FM++S+  RR ++  + D  N+EISK LGK W  +P   K  +  EA++L + H
Sbjct:   64 RPMNAFMVWSQIERRKIMEQWPDMHNAEISKRLGKRWKLLPDYEKIPFIKEAERLRLKH 122

[Close]

BLAST of SOXP-2 vs. Ensembl Cavefish
Match: sox13 (SRY-box transcription factor 13 [Source:NCBI gene;Acc:103022571])

HSP 1 Score: 51.9878 bits (123), Expect = 2.331e-6
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 2

Query:  431 TESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            ++SR     HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W ++    K  Y  E  +L+  H
Sbjct:  427 SDSRTTSSGHIK-RPMNAFMVWAKDERRRILQAFPDMHNSSISKILGSRWKSMSNQEKQPYYEEQARLSRQH 497

[Close]

BLAST of SOXP-2 vs. Ensembl Cavefish
Match: sox7 (SRY-box transcription factor 7 [Source:NCBI gene;Acc:103025329])

HSP 1 Score: 51.6026 bits (122), Expect = 2.427e-6
Identity = 21/59 (35.59%), Postives = 38/59 (64.41%), Query Frame = 2

Query:  470 RPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            RP+N+FM++++  R+ + +   D  N+E+SK+LGK W  +  + K  Y  EA++L + H
Sbjct:   46 RPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALTPSQKRPYVEEAERLRVQH 104

[Close]

Query:  470 RPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            RP+N+FM++++  R+ + +   D  N+E+SK+LGK W  +  + K  Y  EA++L + H
Sbjct:   46 RPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALTPSQKRPYVEEAERLRVQH 104

[Close]

BLAST of SOXP-2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008165.1 (pep scaffold:Pmarinus_7.0:GL479973:18969:29522:-1 gene:ENSPMAG00000007384.1 transcript:ENSPMAT00000008165.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 53.1434 bits (126), Expect = 3.037e-8
Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 2

Query:  458 HITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W  + +  K  Y  E  +L+ LH
Sbjct:   60 HIK-RPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKAMSSQEKQPYYEEQARLSKLH 121

[Close]

BLAST of SOXP-2 vs. Ensembl Sea Lamprey
Match: sox12 (SRY-box transcription factor 12 [Source:ZFIN;Acc:ZDB-GENE-040724-33])

HSP 1 Score: 50.0618 bits (118), Expect = 1.504e-6
Identity = 24/63 (38.10%), Postives = 39/63 (61.90%), Query Frame = 2

Query:  458 HITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            HI  RP+N+FM++S+  RR +++   D  N+EISK LG+ W  +    K  +  EA++L + H
Sbjct:   59 HIK-RPMNAFMVWSQIERRKIMMESPDVHNAEISKRLGRRWKQLKDCEKVPFMREAERLRLKH 120

[Close]

BLAST of SOXP-2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010223.1 (pep scaffold:Pmarinus_7.0:GL478813:2555:9375:-1 gene:ENSPMAG00000009255.1 transcript:ENSPMAT00000010223.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 45.8246 bits (107), Expect = 1.757e-6
Identity = 22/60 (36.67%), Postives = 37/60 (61.67%), Query Frame = 2

Query:  467 PRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            PRP+N+FM++++  RR +     D  N+E+SK+LGK W  +    +     EA++L +LH
Sbjct:    7 PRPMNAFMVWAKDERRRLAKQNPDLHNAELSKMLGKSWRALTPESRRPCVEEAERLRLLH 66

[Close]

BLAST of SOXP-2 vs. Ensembl Sea Lamprey
Match: sox4b (SRY-box transcription factor 4b [Source:ZFIN;Acc:ZDB-GENE-040426-1274])

HSP 1 Score: 48.521 bits (114), Expect = 4.315e-6
Identity = 24/63 (38.10%), Postives = 39/63 (61.90%), Query Frame = 2

Query:  458 HITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            HI  RP+N+FM++S+  RR ++    D  N+EISK LG+ W  +  + K  +  EA++L + H
Sbjct:   61 HIK-RPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGRRWKQLKESEKVPFIREAERLRLKH 122

[Close]

BLAST of SOXP-2 vs. Ensembl Sea Lamprey
Match: sox10 (SRY-box transcription factor 10 [Source:ZFIN;Acc:ZDB-GENE-011207-1])

HSP 1 Score: 48.1358 bits (113), Expect = 5.698e-6
Identity = 23/69 (33.33%), Postives = 40/69 (57.97%), Query Frame = 2

Query:  440 RKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            +   K H+  RP+N+FM++++  RR +   +    N+E+SK LGKLW  +    K  +  EA++L + H
Sbjct:  105 KPGEKPHVK-RPMNAFMVWAQAARRKLSDQYPQLHNAELSKTLGKLWRLLNEGEKRPFVEEAERLRMQH 172

[Close]

BLAST of SOXP-2 vs. Ensembl Nematostella
Match: EDO39449 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S9V3])

HSP 1 Score: 52.7582 bits (125), Expect = 7.888e-9
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 2

Query:  455 KHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            +HI  RP+N+FM++SR  RR + + + +  N EISKLLG  W+ +    K  +  EAK+L  +H
Sbjct:    7 QHIK-RPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEEEKRPFVTEAKRLRTIH 69

[Close]

BLAST of SOXP-2 vs. Ensembl Nematostella
Match: EDO42788 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S0S2])

HSP 1 Score: 51.6026 bits (122), Expect = 2.837e-8
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 2

Query:  416 PYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            PYS V   +K  K     RP+NSFM++++  RR +   +    N+E+SK+LGKLW  + A  K  Y +EA +L   H
Sbjct:    4 PYSEVQLPKKDPK---VKRPMNSFMVWAQSARRKLAEQYPHVHNAELSKMLGKLWRMLSAAEKQPYVDEAARLDKRH 77

[Close]

BLAST of SOXP-2 vs. Ensembl Nematostella
Match: EDO32843 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7STW6])

HSP 1 Score: 50.447 bits (119), Expect = 6.113e-8
Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 2

Query:  398 DDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            DD++    +T  ES+KK       RP+N+FM++S+  RR +     D  N+EISK LGK W  +  + K  +  E+++L I H
Sbjct:    2 DDQVDATQAT-HESKKKSDMQHVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKRLGKRWKLLSESEKRPFVEESERLRIRH 83

[Close]

BLAST of SOXP-2 vs. Ensembl Nematostella
Match: EDO37719 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SEY6])

HSP 1 Score: 47.3654 bits (111), Expect = 7.200e-7
Identity = 22/59 (37.29%), Postives = 38/59 (64.41%), Query Frame = 2

Query:  470 RPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            RP+N+FMI++R  R  +   +  A+N+EIS  LG++WN++ +  +  Y +EA +L   H
Sbjct:   11 RPMNAFMIWARLHRSTIAKRYPQANNAEISIRLGEIWNDLSSEQQKPYFDEATRLKDKH 69

[Close]

BLAST of SOXP-2 vs. Ensembl Nematostella
Match: EDO44399 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVK6])

HSP 1 Score: 46.595 bits (109), Expect = 1.456e-6
Identity = 24/60 (40.00%), Postives = 34/60 (56.67%), Query Frame = 2

Query:  470 RPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILHS 649
            RPLNSFM++++  RR +        N+EISK+LG  W  +P + K  Y  EA +L   H 
Sbjct:   12 RPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPESEKLPYTEEALRLRRQHK 71

[Close]

BLAST of SOXP-2 vs. Ensembl Medaka
Match: sox17 (SRY-box transcription factor 17 [Source:NCBI gene;Acc:100304455])

HSP 1 Score: 58.151 bits (139), Expect = 2.157e-8
Identity = 33/98 (33.67%), Postives = 58/98 (59.18%), Query Frame = 2

Query:  362 IQWMSDLANNLTDDKLS-KPYSTVT--ESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
             QW +D  + L D K+  +P ++ +  +SR K +  I  RP+N+FM++++  R+ +     D  N+E+SK+LGK W  +P T K  +  EA++L + H
Sbjct:   30 CQW-ADALSPLGDAKVKNEPCASGSGSQSRGKSEPRIR-RPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVTEKQPFVEEAERLRVQH 125

[Close]

BLAST of SOXP-2 vs. Ensembl Medaka
Match: sox6b (SRY-box containing gene 6b [Source:NCBI gene;Acc:100304449])

HSP 1 Score: 53.1434 bits (126), Expect = 1.096e-6
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 2

Query:  431 TESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            +  R   + HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W ++    K  Y  E  +L+ LH
Sbjct:  519 SRGRNSNEPHIK-RPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQDKQPYYEEQARLSKLH 589

[Close]

BLAST of SOXP-2 vs. Ensembl Medaka
Match: sox6b (SRY-box containing gene 6b [Source:NCBI gene;Acc:100304449])

HSP 1 Score: 53.1434 bits (126), Expect = 1.285e-6
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 2

Query:  437 SRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
             R   + HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W ++    K  Y  E  +L+ LH
Sbjct:  548 GRNSNEPHIK-RPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQDKQPYYEEQARLSKLH 616

[Close]

BLAST of SOXP-2 vs. Ensembl Medaka
Match: sox6b (SRY-box containing gene 6b [Source:NCBI gene;Acc:100304449])

HSP 1 Score: 53.1434 bits (126), Expect = 1.377e-6
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 2

Query:  431 TESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            +  R   + HI  RP+N+FM++++  RR +L  F D  NS ISK+LG  W ++    K  Y  E  +L+ LH
Sbjct:  586 SRGRNSNEPHIK-RPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQDKQPYYEEQARLSKLH 656

[Close]

BLAST of SOXP-2 vs. Ensembl Medaka
Match: sox8 (SRY-box transcription factor 8 [Source:NCBI gene;Acc:100304451])

HSP 1 Score: 52.373 bits (124), Expect = 1.447e-6
Identity = 24/67 (35.82%), Postives = 42/67 (62.69%), Query Frame = 2

Query:  446 KRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            K K H+  RP+N+FM++++  RR +   +    N+E+SK LGKLW  +  + K  + +EA++L + H
Sbjct:   95 KSKPHVK-RPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVDEAERLRVQH 160

[Close]

BLAST of SOXP-2 vs. Planmine SMEST
Match: SMESG000074761.1 (SMESG000074761.1)

HSP 1 Score: 925.235 bits (2390), Expect = 0.000e+0
Identity = 541/542 (99.82%), Postives = 542/542 (100.00%), Query Frame = 2

Query:  209 MELNYSLNDNNFNLQLESESLTYFDLCQKCSAYQNSLRDWMKHLVDRHPLPIQWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILHSXXXXXXXXXXXXXXXXYLTKCPINSTPLSSNSYESIQDINSVTDTLQNSSNNLQKESNPTSVSSYGSNQECNNSFKNHSVQSSNFPKEINHKPSRKIEKQSCKISSNQIMDDSEGAESSPSSFKNTIKNEIYSSYSPFLNEXXXXXXXXXXXXXXNNVSKHTSDSIITNSPIREEIVLEXXXXXXXXXXXXYRHVFQRXXXXXXXXXXXXXIVTEKVDEQKDLPPSRINIRYVKINKLPIQTKSDFPLTGYFQNFNNDSNLHFQSSIHALNTTLTPDLSVKREATVNNSMTDYINRKRTNVDPLIIDDIFENEQFEDEEVLXXXXXXXXXXXXXXXKSPNFKISTGSSTLSDNPYKEQFCSSPFHLSETDTQPIPVQRLPAIGSWLKSNYSEFMI 1834
            MELNYSLNDNNFNLQLESESLTYFDLCQKCSAYQNSLRDWMKHLVDRHPLPIQWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILHSKEFPEYKYQPKKKKKQYLTKCPINSTPLSSNSYESIQDINSVTDTLQNSSNNLQKESNPTSVSSYGSNQECNNSFKNHS+QSSNFPKEINHKPSRKIEKQSCKISSNQIMDDSEGAESSPSSFKNTIKNEIYSSYSPFLNESHSILSDLSYSSSLNNVSKHTSDSIITNSPIREEIVLENNQPSQQNNINNYRHVFQRTSTLSNSLLTPLTIVTEKVDEQKDLPPSRINIRYVKINKLPIQTKSDFPLTGYFQNFNNDSNLHFQSSIHALNTTLTPDLSVKREATVNNSMTDYINRKRTNVDPLIIDDIFENEQFEDEEVLNFDNPDNNNSSPWSFKSPNFKISTGSSTLSDNPYKEQFCSSPFHLSETDTQPIPVQRLPAIGSWLKSNYSEFMI
Sbjct:    1 MELNYSLNDNNFNLQLESESLTYFDLCQKCSAYQNSLRDWMKHLVDRHPLPIQWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILHSKEFPEYKYQPKKKKKQYLTKCPINSTPLSSNSYESIQDINSVTDTLQNSSNNLQKESNPTSVSSYGSNQECNNSFKNHSIQSSNFPKEINHKPSRKIEKQSCKISSNQIMDDSEGAESSPSSFKNTIKNEIYSSYSPFLNESHSILSDLSYSSSLNNVSKHTSDSIITNSPIREEIVLENNQPSQQNNINNYRHVFQRTSTLSNSLLTPLTIVTEKVDEQKDLPPSRINIRYVKINKLPIQTKSDFPLTGYFQNFNNDSNLHFQSSIHALNTTLTPDLSVKREATVNNSMTDYINRKRTNVDPLIIDDIFENEQFEDEEVLNFDNPDNNNSSPWSFKSPNFKISTGSSTLSDNPYKEQFCSSPFHLSETDTQPIPVQRLPAIGSWLKSNYSEFMI 542

[Close]

BLAST of SOXP-2 vs. Planmine SMEST
Match: SMESG000010063.1 (SMESG000010063.1)

HSP 1 Score: 127.872 bits (320), Expect = 3.666e-33
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 2

Query:  284 LCQKCSAYQNSLRDWMKHLVDRHPLPIQWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILHS 649
            LC  CS  Q++L+ WM HL   HPLP +W+S+ A  L DD+  +PY+ VT+SRK+R++  TPRPLN+FMIFSRH+RRN+L  F DASNS++SK LG LW  +   IKS+Y+ EAK+LA LH+
Sbjct:    2 LCSNCSNNQDTLKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIVTDSRKRRRRPTTPRPLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHA 123

[Close]

BLAST of SOXP-2 vs. Planmine SMEST
Match: SMESG000010063.1 (SMESG000010063.1)

HSP 1 Score: 129.028 bits (323), Expect = 1.780e-32
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 2

Query:  284 LCQKCSAYQNSLRDWMKHLVDRHPLPIQWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILHS 649
            LC  CS  Q++L+ WM HL   HPLP +W+S+ A  L DD+  +PY+ VT+SRK+R++  TPRPLN+FMIFSRH+RRN+L  F DASNS++SK LG LW  +   IKS+Y+ EAK+LA LH+
Sbjct:    2 LCSNCSNNQDTLKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIVTDSRKRRRRPTTPRPLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHA 123

[Close]

BLAST of SOXP-2 vs. Planmine SMEST
Match: SMESG000011244.1 (SMESG000011244.1)

HSP 1 Score: 54.299 bits (129), Expect = 3.364e-7
Identity = 32/94 (34.04%), Postives = 49/94 (52.13%), Query Frame = 2

Query:  365 QWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            ++  D   N+T        S +T S +K+   +  RP+N+FM++SR  RR +        NSEISK LG +W N+    K  + +EAK+L   H
Sbjct:  224 EFSKDQTQNVTTANSQTSQSNITSSSQKKDDRVK-RPMNAFMVWSRGQRRRMAQDNPKMHNSEISKRLGGMWKNLSEEDKKPFIDEAKRLRANH 316

[Close]

BLAST of SOXP-2 vs. Planmine SMEST
Match: SMESG000011244.1 (SMESG000011244.1)

HSP 1 Score: 54.299 bits (129), Expect = 3.426e-7
Identity = 32/94 (34.04%), Postives = 49/94 (52.13%), Query Frame = 2

Query:  365 QWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILH 646
            ++  D   N+T        S +T S +K+   +  RP+N+FM++SR  RR +        NSEISK LG +W N+    K  + +EAK+L   H
Sbjct:  225 EFSKDQTQNVTTANSQTSQSNITSSSQKKDDRVK-RPMNAFMVWSRGQRRRMAQDNPKMHNSEISKRLGGMWKNLSEEDKKPFIDEAKRLRANH 317

The following BLAST results are available for this feature:

BLAST of SOXP-2 vs. Ensembl Human
BLAST of SOXP-2 vs. Ensembl Celegans
BLAST of SOXP-2 vs. Ensembl Fly
BLAST of SOXP-2 vs. Ensembl Zebrafish
BLAST of SOXP-2 vs. Ensembl Xenopus
BLAST of SOXP-2 vs. Ensembl Mouse
BLAST of SOXP-2 vs. UniProt/SwissProt
BLAST of SOXP-2 vs. TrEMBL
BLAST of SOXP-2 vs. Ensembl Cavefish
BLAST of SOXP-2 vs. Ensembl Sea Lamprey
BLAST of SOXP-2 vs. Ensembl Yeast
BLAST of SOXP-2 vs. Ensembl Nematostella
BLAST of SOXP-2 vs. Ensembl Medaka
BLAST of SOXP-2 vs. Planmine SMEST

BLAST of SOXP-2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
SOX12	9.902e-7	39.68	SRY-box transcription factor 12 [Source:HGNC Symbo...	[more]
SOX6	1.008e-6	34.04	SRY-box transcription factor 6 [Source:HGNC Symbol...	[more]
SOX6	1.008e-6	34.04	SRY-box transcription factor 6 [Source:HGNC Symbol...	[more]
SOX6	1.413e-6	36.14	SRY-box transcription factor 6 [Source:HGNC Symbol...	[more]
SOX6	1.413e-6	36.14	SRY-box transcription factor 6 [Source:HGNC Symbol...	[more]

BLAST of SOXP-2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
sem-2	2.476e-7	38.96	Transcription factor sem-2 [Source:UniProtKB/Swis...	[more]
sem-2	2.476e-7	38.96	Transcription factor sem-2 [Source:UniProtKB/Swis...	[more]
egl-13	7.107e-7	39.13	Transcription factor egl-13 [Source:UniProtKB/Swi...	[more]
egl-13	7.395e-7	38.96	Transcription factor egl-13 [Source:UniProtKB/Swi...	[more]
egl-13	7.593e-7	39.13	Transcription factor egl-13 [Source:UniProtKB/Swi...	[more]

BLAST of SOXP-2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Sox14	1.248e-8	41.77	gene:FBgn0005612 transcript:FBtr0072158	[more]
Sox14	1.248e-8	41.77	gene:FBgn0005612 transcript:FBtr0343282	[more]
Sox14	1.248e-8	41.77	gene:FBgn0005612 transcript:FBtr0072157	[more]
Sox100B	1.896e-6	38.81	gene:FBgn0024288 transcript:FBtr0085735	[more]
Sox102F	3.551e-6	40.00	gene:FBgn0039938 transcript:FBtr0089252	[more]

BLAST of SOXP-2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
sox13	8.909e-7	37.33	SRY-box transcription factor 13 [Source:ZFIN;Acc:Z...	[more]
sox13	1.149e-6	37.33	SRY-box transcription factor 13 [Source:ZFIN;Acc:Z...	[more]
sox13	1.149e-6	37.33	SRY-box transcription factor 13 [Source:ZFIN;Acc:Z...	[more]
sox12	1.465e-6	40.68	SRY-box transcription factor 12 [Source:ZFIN;Acc:Z...	[more]
FQ377628.1	1.616e-6	38.98	pep chromosome:GRCz11:2:22564928:22575851:-1 gene:...	[more]

BLAST of SOXP-2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
sox7	9.151e-8	31.18	SRY-box 7 [Source:NCBI gene;Acc:549080]	[more]
sox17b.3	1.064e-6	32.98	SRY-box 17 alpha [Source:NCBI gene;Acc:395066]	[more]
sox17b.3	1.161e-6	32.98	SRY-box 17 alpha [Source:NCBI gene;Acc:395066]	[more]
sox17b.3	1.214e-6	32.98	SRY-box 17 alpha [Source:NCBI gene;Acc:395066]	[more]
spidr	1.721e-6	37.50	scaffold protein involved in DNA repair [Source:Xe...	[more]

BLAST of SOXP-2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Sox12	8.226e-7	39.68	SRY (sex determining region Y)-box 12 [Source:MGI ...	[more]
Sox12	8.226e-7	39.68	SRY (sex determining region Y)-box 12 [Source:MGI ...	[more]
Sox6	9.964e-7	36.14	SRY (sex determining region Y)-box 6 [Source:MGI S...	[more]
Sox6	1.059e-6	36.14	SRY (sex determining region Y)-box 6 [Source:MGI S...	[more]
Sox6	1.059e-6	36.14	SRY (sex determining region Y)-box 6 [Source:MGI S...	[more]

BLAST of SOXP-2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P40656\|SOX14_DROME	1.251e-7	41.77	Putative transcription factor SOX-14 OS=Drosophila...	[more]
sp\|Q28GD5\|SOX7_XENTR	4.848e-7	31.18	Transcription factor Sox-7 OS=Xenopus tropicalis O...	[more]
sp\|O42342\|SOX7_XENLA	8.990e-7	31.18	Transcription factor Sox-7 OS=Xenopus laevis OX=83...	[more]
sp\|Q8T3B9\|SEM2_CAEEL	3.149e-6	38.96	Transcription factor sem-2 OS=Caenorhabditis elega...	[more]
sp\|O15370\|SOX12_HUMAN	4.755e-6	39.68	Transcription factor SOX-12 OS=Homo sapiens OX=960...	[more]

BLAST of SOXP-2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
H9CXU9	0.000e+0	100.00	SOXP-2 OS=Schmidtea mediterranea OX=79327 PE=2 SV=...	[more]
A0A564XWJ0	4.277e-34	48.03	HMG box domain-containing protein (Fragment) OS=Hy...	[more]
A0A0R3TTK2	3.407e-32	49.19	HMG box domain-containing protein OS=Rodentolepis ...	[more]
A0A0R3SCN8	6.285e-32	49.19	HMG box domain-containing protein OS=Hymenolepis d...	[more]
A0A183TH27	6.680e-32	50.83	HMG box domain-containing protein OS=Schistocephal...	[more]

BLAST of SOXP-2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
sox6	2.001e-6	36.11	SRY-box transcription factor 6 [Source:ZFIN;Acc:ZD...	[more]
sox12	2.013e-6	40.68	transcription factor SOX-4-like [Source:NCBI gene;...	[more]
sox13	2.331e-6	37.50	SRY-box transcription factor 13 [Source:NCBI gene;...	[more]
sox7	2.427e-6	35.59	SRY-box transcription factor 7 [Source:NCBI gene;A...	[more]
sox7	2.427e-6	35.59	SRY-box transcription factor 7 [Source:NCBI gene;A...	[more]

BLAST of SOXP-2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSPMAT00000008165.1	3.037e-8	41.27	pep scaffold:Pmarinus_7.0:GL479973:18969:29522:-1 ...	[more]
sox12	1.504e-6	38.10	SRY-box transcription factor 12 [Source:ZFIN;Acc:Z...	[more]
ENSPMAT00000010223.1	1.757e-6	36.67	pep scaffold:Pmarinus_7.0:GL478813:2555:9375:-1 ge...	[more]
sox4b	4.315e-6	38.10	SRY-box transcription factor 4b [Source:ZFIN;Acc:Z...	[more]
sox10	5.698e-6	33.33	SRY-box transcription factor 10 [Source:ZFIN;Acc:Z...	[more]

BLAST of SOXP-2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SOXP-2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO39449	7.888e-9	40.63	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO42788	2.837e-8	38.96	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO32843	6.113e-8	36.14	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO37719	7.200e-7	37.29	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO44399	1.456e-6	40.00	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SOXP-2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
sox17	2.157e-8	33.67	SRY-box transcription factor 17 [Source:NCBI gene;...	[more]
sox6b	1.096e-6	37.50	SRY-box containing gene 6b [Source:NCBI gene;Acc:1...	[more]
sox6b	1.285e-6	38.57	SRY-box containing gene 6b [Source:NCBI gene;Acc:1...	[more]
sox6b	1.377e-6	37.50	SRY-box containing gene 6b [Source:NCBI gene;Acc:1...	[more]
sox8	1.447e-6	35.82	SRY-box transcription factor 8 [Source:NCBI gene;A...	[more]

BLAST of SOXP-2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000074761.1	0.000e+0	99.82	SMESG000074761.1	[more]
SMESG000010063.1	3.666e-33	55.74	SMESG000010063.1	[more]
SMESG000010063.1	1.780e-32	55.74	SMESG000010063.1	[more]
SMESG000011244.1	3.364e-7	34.04	SMESG000011244.1	[more]
SMESG000011244.1	3.426e-7	34.04	SMESG000011244.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Cross References

External references for this transcript


Database	Accession
SmedGD GBrowse	SMED30035063
GenBank	AFD29620.1

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30035063 ID=SMED30035063|Name=SOXP-2|organism=Schmidtea mediterranea sexual|type=transcript|length=2664bp
TGTACATTGAATTCAATATTTAATAGTGATTAACTTATCCAAATTTTCAG
CCACTTTTAGTTTAATTTGCGTGTTTTGTTGAGCAGTTTTTATTGGCGCA
TTTTATAAAAAATACAAAACCAATCCAAATCAGTTTGAATCATTGTCAGA
TTTTAGTCGTGCAAGATACATTATTTCATTTTAATTCTCTAGCATATGAC
ATTTAAACATGGAGCTGAATTACTCGTTGAATGATAATAATTTCAATTTA
CAATTAGAAAGCGAGTCCTTGACTTATTTCGATTTATGCCAAAAATGTTC
AGCGTACCAAAATAGTCTTAGAGACTGGATGAAACATTTAGTTGACAGAC
ATCCTTTACCTATTCAGTGGATGAGTGATTTGGCAAATAATTTAACAGAT
GATAAATTATCTAAGCCATATTCGACCGTTACAGAATCCCGTAAAAAACG
CAAGAAGCATATCACTCCAAGGCCATTGAATAGTTTCATGATATTTTCCA
GACATTTAAGAAGAAATGTTCTTATTTTCTTTAGTGATGCTTCAAATTCA
GAAATAAGCAAACTTCTTGGGAAGTTATGGAATAACATTCCAGCTACCAT
TAAATCGATGTATGATAATGAAGCTAAAAAGCTTGCAATTTTACACTCCA
AAGAATTTCCTGAATATAAATATCAACCTAAAAAGAAAAAAAAACAATAT
CTAACGAAATGCCCCATTAATTCCACACCTTTGTCGAGTAATTCATATGA
AAGTATTCAAGATATTAATTCAGTAACGGATACACTACAGAATTCATCTA
ACAACTTACAAAAGGAAAGTAATCCGACCTCTGTTTCGTCTTATGGAAGC
AATCAGGAATGTAATAATTCATTTAAGAATCATAGTGTACAGTCCAGCAA
TTTTCCCAAAGAAATCAACCATAAACCAAGTAGAAAAATTGAAAAGCAAT
CGTGCAAAATAAGTTCCAATCAAATAATGGATGATTCAGAAGGGGCTGAA
TCCAGTCCATCATCATTTAAAAACACCATTAAAAATGAAATTTATTCCTC
TTATAGTCCATTTCTAAATGAATCCCATAGCATTCTTTCAGATTTAAGTT
ACTCTTCGTCTCTCAATAACGTTTCAAAACACACTAGCGATTCCATTATA
ACGAATTCTCCTATCAGAGAAGAAATTGTCTTAGAAAATAATCAGCCCTC
TCAACAGAATAATATAAACAATTACCGACACGTATTTCAGAGAACTTCGA
CTCTATCCAACAGTTTGTTGACCCCTTTAACCATTGTCACAGAAAAAGTT
GACGAACAGAAAGATCTTCCACCATCAAGAATCAATATCCGATATGTGAA
AATTAACAAACTACCGATTCAAACAAAATCCGATTTCCCATTGACTGGAT
ATTTTCAAAATTTCAATAACGACTCAAATCTTCATTTTCAGAGTTCCATT
CACGCCCTGAATACGACATTGACTCCAGATCTGTCGGTAAAACGCGAAGC
CACTGTCAACAACAGCATGACAGATTATATCAATCGAAAACGTACAAATG
TCGATCCACTTATCATCGATGATATATTTGAAAACGAACAATTTGAAGAT
GAGGAAGTGTTGAATTTTGACAATCCTGATAACAATAACAGTTCTCCTTG
GTCGTTTAAATCGCCTAACTTTAAAATATCTACCGGTTCCTCGACACTGT
CAGACAATCCGTACAAAGAACAGTTTTGTTCTTCCCCGTTCCATCTATCA
GAAACTGATACTCAACCGATTCCAGTTCAACGATTGCCAGCAATCGGCTC
ATGGTTAAAGTCAAACTATTCTGAATTCATGATCTGATCCAATCTATTAT
TCTATTCAATTGTCTGTTTTCATACAATTAGGATTACTTGTTATGAATTC
TAGCTGATTTTGAGTGTGTTTATAAAGCTTTTGTAACGCCTTTTCTATAC
AGATGTTCGATATATATATATAAATAAATAAATATAAATATATAACAATT
TTATTGACATTGTACAGTATTCCATAAGCCCGATCTTGTAACGCATTTAT
TACTATACTCAATAGACCAATCTATATGTTCTCATAATTTCTATGTTGTT
ATTGTACACGGGAATTATTACTATAAATGATGCGAATTTATCACTTTGTA
ATTGAGGGAAATTATCGATCAATTTGCGCTTTCAGACATTTTTCATGTAT
AAACTTGTTTTTCTCTTTTTTATCATCAAAAATTTAATTTTTTTGATATC
GCTATTCATCATATTATTATTCTCCGTTGCATTTGTTAGATTATGTAAAT
TTTTATATGAAAATGTTGTTATTTATTGTATTTTTATACGATTTTTTGCT
TTGGATACACTTTTATCAAATCATATTGCCAGTGTGAGCATTTATTGGAC
TTGTTGTTATTGCTGCTGCTCGAATAATTGCTTCATACGGGGAGTCTCGA
TATTTTCATGAAGCGATTTTCATGGTTGCCGCTCTCCGCCGCCGCCATTC
GGTGTAAATATCAATTGCATTGCCAGCACGTTTTCTCAAACTCAATTTTT
GTACTCAATTTCAATTGATTTATGTTCATTTTATTTTTCATAGAAATGAG
TAAATAAATTTTCATAAATAGTTTTGTTTTCAATATTTTTAGGAAATTTG
AATGTGTCTCTAGA

protein sequence of SMED30035063-orf-1

>SMED30035063-orf-1 ID=SMED30035063-orf-1|Name=SMED30035063-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=543bp
MELNYSLNDNNFNLQLESESLTYFDLCQKCSAYQNSLRDWMKHLVDRHPL
PIQWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHL
RRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILHSKEF
PEYKYQPKKKKKQYLTKCPINSTPLSSNSYESIQDINSVTDTLQNSSNNL
QKESNPTSVSSYGSNQECNNSFKNHSVQSSNFPKEINHKPSRKIEKQSCK
ISSNQIMDDSEGAESSPSSFKNTIKNEIYSSYSPFLNESHSILSDLSYSS
SLNNVSKHTSDSIITNSPIREEIVLENNQPSQQNNINNYRHVFQRTSTLS
NSLLTPLTIVTEKVDEQKDLPPSRINIRYVKINKLPIQTKSDFPLTGYFQ
NFNNDSNLHFQSSIHALNTTLTPDLSVKREATVNNSMTDYINRKRTNVDP
LIIDDIFENEQFEDEEVLNFDNPDNNNSSPWSFKSPNFKISTGSSTLSDN
PYKEQFCSSPFHLSETDTQPIPVQRLPAIGSWLKSNYSEFMI*

Aliases

The feature 'SOXP-2' has the following synonyms


Synonym
SOXP-2

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000014	zeta neoblast
PLANA:0000039	gamma neoblast
PLANA:0000418	head
PLANA:0000419	prepharyngeal region
PLANA:0000420	parapharyngeal region
PLANA:0000421	tail
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell
PLANA:0002142	parenchyma
PLANA:0004517	blastomere
PLANA:0000429	neoblast
PLANA:0000009	sigma neoblast

Vocabulary: **INTERPRO**
Term	Definition
IPR036910	HMG_box_dom_sf
IPR009071	HMG_box_dom

Vocabulary: **molecular function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Schmidtea mediterranea Developmental Stages**
Term	Definition
PLANA:0000008	Stage 8
PLANA:0000004	Stage 4
PLANA:0000007	Stage 7
PLANA:0000002	Stage 2
PLANA:0000006	Stage 6
PLANA:0000005	Stage 5
PLANA:0000003	Stage 3

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 85..155 e-value: 1.5E-16 score: 70.9
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 87..154 e-value: 1.3E-14 score: 54.3
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 86..154 score: 15.249
IPR036910	High mobility group box domain superfamily	GENE3D	G3DSA:1.10.30.10		coord: 82..165 e-value: 3.4E-20 score: 74.3
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	SSF47095	HMG-box	coord: 87..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..268
None	No IPR available	PANTHER	PTHR10270:SF161	SOX DOMAIN-CONTAINING PROTEIN DICHAETE-RELATED	coord: 73..334
None	No IPR available	PANTHER	PTHR10270	SOX TRANSCRIPTION FACTOR	coord: 73..334
None	No IPR available	CDD	cd00084	HMG-box	coord: 87..151 e-value: 4.83988E-15 score: 67.6439

Main menu

SOXP-2

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 40

Owlery

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