Ubiquitin-like domain-containing protein

Overview


Name	Ubiquitin-like domain-containing protein
Smed ID	SMED30035037
Length (bp)	499

Neoblast Clusters

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Ubiquitin-like domain-containing protein (SMED30035037) t-SNE clustered cells

Violin plots show distribution of expression levels for Ubiquitin-like domain-containing protein (SMED30035037) in cells (dots) of each of the 12 neoblast clusters.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30035037

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
oocyte	SMED30035037	h1SMcG0016282	Contig46495	uc_Smed_v2	PMID:28434803 Rouhana et al., 2017
oocyte	SMED30035037	h1SMcG0016282	Contig46495	newmark_ests	PMID:28434803 Rouhana et al., 2017
vitelline gland	SMED30035037	h1SMcG0016282	Contig46495	uc_Smed_v2	PMID:28434803 Rouhana et al., 2017
vitelline gland	SMED30035037	h1SMcG0016282	Contig46495	newmark_ests	PMID:28434803 Rouhana et al., 2017
reproductive organ	SMED30035037	h1SMcG0016282	Contig46495	uc_Smed_v2	PMID:28434803 Rouhana et al., 2017
reproductive organ	SMED30035037	h1SMcG0016282	Contig46495	newmark_ests	PMID:28434803 Rouhana et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Human
Match: RPS27A (ribosomal protein S27a [Source:HGNC Symbol;Acc:HGNC:10417])

HSP 1 Score: 86.6557 bits (213), Expect = 1.499e-21
Identity = 62/147 (42.18%), Postives = 90/147 (61.22%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y +D++G +++LR ECP  ECG G+F+A H DR +CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLT 147

[Close]

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y +D++G +++LR ECP  ECG G+F+A H DR +CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLT 147

[Close]

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y +D++G +++LR ECP  ECG G+F+A H DR +CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLT 147

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BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Human
Match: AL136454.1 (novel protein similar to ribosomal protein S27a RPS27A)

HSP 1 Score: 81.2629 bits (199), Expect = 1.797e-19
Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFT--VELSQ-LCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T  VELS  + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTP+K  H  K   LA+LK Y +D++G ++ L  ECP  ECG G+F+A H DR +CGKC  T
Sbjct:    1 MQIFVKTLMGKTITLEVELSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPRKNKHKRKKVKLALLKYYKVDENGKISCLHRECPSDECGAGVFMASHFDRHYCGKCCLT 147

[Close]

Query:   25 MAIFVKYL-DKIFT--VELSQ-LCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T  VELS  + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTP+K  H  K   LA+LK Y +D++G ++ L  ECP  ECG G+F+A H DR +CGKC  T
Sbjct:    1 MQIFVKTLMGKTITLEVELSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPRKNKHKRKKVKLALLKYYKVDENGKISCLHRECPSDECGAGVFMASHFDRHYCGKCCLT 147

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BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Celegans
Match: ubl-1 (Ubiquitin-like protein 1-40S ribosomal protein S27a Ubiquitin-like protein 1 40S ribosomal protein S27a [Source:UniProtKB/Swiss-Prot;Acc:P37165])

HSP 1 Score: 81.6481 bits (200), Expect = 6.669e-20
Identity = 60/148 (40.54%), Postives = 89/148 (60.14%), Query Frame = 1

Query:   31 IFVKYLDKIFTVELS---QLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREEC--PECGPGIFLAEHADRRHCGKCSFTVFKD 459
            +FVK L +   +E++    + +I + IE+   +  +EQ++ Y GR + D        I +E TI V   L GG  KRKKK +TTPKK     K   LA+LK Y ID++G +T+LR+EC  P CG G+F+A+HA+R +CG+C  T+  D
Sbjct:    2 VFVKTLHRTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLEDSDC----GIDSEATIYVNLELLGGAKKRKKKVYTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVD 145

[Close]

Query:   31 IFVKYLDKIFTVELS---QLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREEC--PECGPGIFLAEHADRRHCGKCSFTVFKD 459
            +FVK L +   +E++    + +I + IE+   +  +EQ++ Y GR + D        I +E TI V   L GG  KRKKK +TTPKK     K   LA+LK Y ID++G +T+LR+EC  P CG G+F+A+HA+R +CG+C  T+  D
Sbjct:    2 VFVKTLHRTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLEDSDC----GIDSEATIYVNLELLGGAKKRKKKVYTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVD 145

[Close]

Query:   31 IFVKYLDKIFTVELS---QLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREEC--PECGPGIFLAEHADRRHCGKCSFTVFKD 459
            +FVK L +   +E++    + +I + IE+   +  +EQ++ Y GR + D        I +E TI V   L GG  KRKKK +TTPKK     K   LA+LK Y ID++G +T+LR+EC  P CG G+F+A+HA+R +CG+C  T+  D
Sbjct:    2 VFVKTLHRTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLEDSDC----GIDSEATIYVNLELLGGAKKRKKKVYTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVD 145

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BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Fly
Match: RpS27A (gene:FBgn0003942 transcript:FBtr0080016)

HSP 1 Score: 85.5001 bits (210), Expect = 2.213e-21
Identity = 62/147 (42.18%), Postives = 90/147 (61.22%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKKN++TPKKI H  K   LA+LK Y +D++G + +LR ECP   CG G+F+A H DR +CGKC+ T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYSTPKKIKHKRKKVKLAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLT 147

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BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Zebrafish
Match: rps27a (ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018])

HSP 1 Score: 85.5001 bits (210), Expect = 3.134e-21
Identity = 62/147 (42.18%), Postives = 89/147 (60.54%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y +D++G + +LR ECP  ECG G+F+A H DR +CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLT 147

[Close]

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y +D++G + +LR ECP  ECG G+F+A H DR +CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLT 147

[Close]

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y +D++G + +LR ECP  ECG G+F+A H DR +CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLT 147

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Xenopus
Match: rps27a (ribosomal protein S27a [Source:NCBI gene;Acc:548926])

HSP 1 Score: 86.6557 bits (213), Expect = 1.358e-21
Identity = 62/147 (42.18%), Postives = 90/147 (61.22%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y +D++G +++LR ECP  ECG G+F+A H DR +CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLT 147

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Xenopus
Match: rps27a (ribosomal protein S27a [Source:NCBI gene;Acc:548926])

HSP 1 Score: 80.1073 bits (196), Expect = 3.724e-19
Identity = 51/108 (47.22%), Postives = 73/108 (67.59%), Query Frame = 1

Query:  130 EQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y +D++G +++LR ECP  ECG G+F+A H DR +CGKC  T
Sbjct:   33 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLT 140

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BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Mouse
Match: Rps27a (ribosomal protein S27A [Source:MGI Symbol;Acc:MGI:1925544])

HSP 1 Score: 85.5001 bits (210), Expect = 3.456e-21
Identity = 61/147 (41.50%), Postives = 89/147 (60.54%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y +D++G +++LR ECP  ECG G+F+  H DR +CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLT 147

[Close]

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y +D++G +++LR ECP  ECG G+F+  H DR +CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLT 147

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BLAST of Ubiquitin-like domain-containing protein vs. UniProt/SwissProt
Match: sp|P69061|RS27A_KLULA (Ubiquitin-40S ribosomal protein S27a OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=ubi3 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 9.135e-24
Identity = 66/145 (45.52%), Postives = 89/145 (61.38%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVELSQ---LCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECPECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK +TTPKKI H HK   LA+L  Y +D +G + KLR+ECP CGPGIFLA H DR +CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTTPKKIRHKHKKVKLAVLNYYKVDDEGKVAKLRKECPNCGPGIFLANHGDRFYCGKCHST 145

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. UniProt/SwissProt
Match: sp|P59271|R27AA_ARATH (Ubiquitin-40S ribosomal protein S27a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27AA PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.412e-23
Identity = 64/151 (42.38%), Postives = 90/151 (59.60%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVELSQ---LCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT-VFK 456
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK +T PKKI H HK   LA+L+ Y +D  G + +L++ECP   CGPG F+A H DR +CGKC  T VFK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHTHKKVKLAVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFK 151

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. UniProt/SwissProt
Match: sp|P79781|RS27A_CHICK (Ubiquitin-40S ribosomal protein S27a OS=Gallus gallus OX=9031 GN=RPS27A PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 6.821e-21
Identity = 62/147 (42.18%), Postives = 90/147 (61.22%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y +D++G +++LR ECP  ECG G+F+A H DR +CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLT 147

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. UniProt/SwissProt
Match: sp|P62979|RS27A_HUMAN (Ubiquitin-40S ribosomal protein S27a OS=Homo sapiens OX=9606 GN=RPS27A PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 7.197e-21
Identity = 62/147 (42.18%), Postives = 90/147 (61.22%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y +D++G +++LR ECP  ECG G+F+A H DR +CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLT 147

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. UniProt/SwissProt
Match: sp|P62978|RS27A_CAVPO (Ubiquitin-40S ribosomal protein S27a OS=Cavia porcellus OX=10141 GN=RPS27A PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 7.197e-21
Identity = 62/147 (42.18%), Postives = 90/147 (61.22%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y +D++G +++LR ECP  ECG G+F+A H DR +CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLT 147

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. TrEMBL
Match: A0A507DVW0 (Ubiquitin-like domain-containing protein OS=Powellomyces hirtus OX=109895 GN=PhCBS80983_g04943 PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.860e-23
Identity = 66/147 (44.90%), Postives = 90/147 (61.22%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVELSQ---LCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECPE--CGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK +TTPKKI H HK   LA+LK Y +D DG +T+LR ECP   CG GIF+A H DR++CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKTYTTPKKIRHKHKKVKLAVLKYYKVDDDGKITRLRRECPNETCGAGIFMAMHFDRQYCGKCGLT 147

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. TrEMBL
Match: A0A507EDP5 (Ubiquitin-like domain-containing protein OS=Powellomyces hirtus OX=109895 GN=PhCBS80983_g00453 PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.986e-23
Identity = 66/147 (44.90%), Postives = 90/147 (61.22%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVELSQ---LCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECPE--CGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK +TTPKKI H HK   LA+LK Y +D DG +T+LR ECP   CG GIF+A H DR++CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKTYTTPKKIRHKHKKVKLAVLKYYKVDDDGKITRLRRECPNETCGAGIFMAMHFDRQYCGKCGLT 147

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. TrEMBL
Match: A0A1K0H796 (Probable ubiquitin/ribosomal protein S27a fusion protein OS=Ustilago bromivora OX=307758 GN=UBRO_06600 PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.397e-23
Identity = 63/149 (42.28%), Postives = 91/149 (61.07%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVELSQ---LCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREEC--PECGPGIFLAEHADRRHCGKCSFTVF 453
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TLL  NI  E T+ +  RL GG  KRKKK +TTPK+I H  K   ++ILK Y +D DGN+ +LR EC  PECG GIF++ H +R++CGKC  T  
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLLDYNIQKESTLHLVLRLRGGAKKRKKKVYTTPKRIPHKRKKVKMSILKYYKVDGDGNIKRLRRECPSPECGAGIFMSWHKNRQYCGKCKLTFM 149

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. TrEMBL
Match: A0A0U2V515 (40S ribosomal protein S27a OS=Acartia pacifica OX=335913 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.558e-22
Identity = 63/147 (42.86%), Postives = 90/147 (61.22%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKK+N+TTPKKI H H+   LA+LK Y +D +G + +LR ECP  ECG G+F+A H DR+ CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKENYTTPKKIKHKHRKVKLAVLKYYKVDDNGKINRLRRECPSEECGAGVFMAAHFDRQTCGKCGLT 147

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. TrEMBL
Match: A0A3G2S3X0 (40S ribosomal protein S27a OS=Malassezia restricta CBS 7877 OX=425264 GN=RPS27A PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.593e-22
Identity = 63/149 (42.28%), Postives = 91/149 (61.07%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVELSQ---LCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREEC--PECGPGIFLAEHADRRHCGKCSFTVF 453
            M +FVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK +TTPKKI H H+   +A LK Y I+ DG++ +LR EC  PECGPGIF+A H +R++CGKC  T  
Sbjct:    1 MQVFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKVYTTPKKIKHKHRKVKMATLKYYRINDDGSVKQLRRECPSPECGPGIFMAWHHNRQYCGKCHLTYL 149

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Cavefish
Match: rps27a (ribosomal protein S27a [Source:NCBI gene;Acc:103044043])

HSP 1 Score: 85.5001 bits (210), Expect = 2.656e-21
Identity = 62/147 (42.18%), Postives = 89/147 (60.54%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y +D++G + +LR ECP  ECG G+F+A H DR +CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLT 147

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007011.1 (pep scaffold:Pmarinus_7.0:GL484716:14406:16135:-1 gene:ENSPMAG00000006335.1 transcript:ENSPMAT00000007011.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 78.1814 bits (191), Expect = 1.446e-19
Identity = 51/108 (47.22%), Postives = 73/108 (67.59%), Query Frame = 1

Query:  130 EQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            +Q+ ++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y +D++G +T+LR ECP  ECG G+F+A H +R++CGKC  T
Sbjct:    5 DQQRIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKITRLRRECPSEECGAGVFMANHFNRQYCGKCCLT 112

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Yeast
Match: RPS31 (Fusion protein cleaved to yield ribosomal protein S31 and ubiquitin; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; interacts genetically with translation factor eIF2B; homologous to mammalian ribosomal protein S27A, no bacterial homolog [Source:SGD;Acc:S000004157])

HSP 1 Score: 75.0998 bits (183), Expect = 2.638e-18
Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 1

Query:   25 MAIFVKYLD-KIFTVELSQ---LCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREEC--PECGPGIFLAEHADRRHCGKCSFTVFK 456
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK +TTPKKI H HK   LA+L  Y +D +G +TKLR EC  P CG G+FLA H DR +CGKC  +V+K
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTTPKKIKHKHKKVKLAVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKC-HSVYK 149

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Nematostella
Match: EDO48503 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RJ25])

HSP 1 Score: 77.411 bits (189), Expect = 1.101e-18
Identity = 64/147 (43.54%), Postives = 91/147 (61.90%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKKN+TTPKKI H  K   LA+LK Y +D++G +T+LR ECP   CG G+F+A H DR++CGKC  T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKKKKVKLAVLKYYKVDENGKITRLRRECPSESCGAGVFMASHFDRQYCGKCCLT 147

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Medaka
Match: rps27a (ribosomal protein S27a [Source:NCBI gene;Acc:101164670])

HSP 1 Score: 87.0409 bits (214), Expect = 4.902e-22
Identity = 62/147 (42.18%), Postives = 90/147 (61.22%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y +D++G + +LR ECP  ECG G+F+A H DR +CGKC+ T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCTLT 147

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Medaka
Match: rps27a (ribosomal protein S27a [Source:NCBI gene;Acc:101164670])

HSP 1 Score: 74.3294 bits (181), Expect = 6.988e-17
Identity = 62/171 (36.26%), Postives = 90/171 (52.63%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVEL---SQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSY------------------------SIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y                         +D++G + +LR ECP  ECG G+F+A H DR +CGKC+ T
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVWLEPAAAEPGSVSASGLTSVVLQVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCTLT 171

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Medaka
Match: rps27a (ribosomal protein S27a [Source:NCBI gene;Acc:101164670])

HSP 1 Score: 67.781 bits (164), Expect = 3.352e-14
Identity = 51/132 (38.64%), Postives = 73/132 (55.30%), Query Frame = 1

Query:  130 EQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSY------------------------SIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFT 447
            +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKK++TTPKK  H  K   LA+LK Y                         +D++G + +LR ECP  ECG G+F+A H DR +CGKC+ T
Sbjct:   55 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVWLEPAAAEPGSVSASGLTSVVLQVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCTLT 186

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. Planmine SMEST
Match: SMESG000067884.1 (SMESG000067884.1)

HSP 1 Score: 271.166 bits (692), Expect = 1.183e-94
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1

Query:   25 MAIFVKYLDKIFTVELSQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECPECGPGIFLAEHADRRHCGKCSFTVFKDQRNIST 477
            MAIFVKYLDKIFTVELSQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGKNKRKKKNFTTPKKIAHVHKSQPLAILKSYSIDKDGNLTKLREECPECGPGIFLAEHADRRHCGKCSFTVFKDQRNIST
Sbjct:    1 MAIFVKYLDKIFTVELSQLCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGKNKRKKKNFTTPKKIAHVHKSQPLAILKSYSIDKDGNLTKLREECPECGPGIFLAEHADRRHCGKCSFTVFKDQRNIST 151

[Close]

BLAST of Ubiquitin-like domain-containing protein vs. Planmine SMEST
Match: SMESG000048830.1 (SMESG000048830.1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.098e-15
Identity = 64/153 (41.83%), Postives = 92/153 (60.13%), Query Frame = 1

Query:   25 MAIFVKYL-DKIFTVELSQ---LCNISEIIESVCNLRKQEQKIVYQGRLITDVKTLLSENICNEDTIEVFERLCGGXXXXXXXXXXXXXXIAHVHKSQPLAILKSYSIDKDGNLTKLREECP--ECGPGIFLAEHADRRHCGKCSFTVFKDQR 465
            M IFVK L  K  T+E+     + N+   I+    +   +Q++++ G+ + D +TL   NI  E T+ +  RL GG  KRKKKN+TTPKKI H  K   LA+LK Y +D +G + +LR+ECP   CGPG+F+A H DR++CGKC  T     +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKNYTTPKKIKHKKKKVKLAVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNK 153

The following BLAST results are available for this feature:

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Human
BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Celegans
BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Fly
BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Zebrafish
BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Xenopus
BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Mouse
BLAST of Ubiquitin-like domain-containing protein vs. UniProt/SwissProt
BLAST of Ubiquitin-like domain-containing protein vs. TrEMBL
BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Cavefish
BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Sea Lamprey
BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Yeast
BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Nematostella
BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Medaka
BLAST of Ubiquitin-like domain-containing protein vs. Planmine SMEST

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RPS27A	1.499e-21	42.18	ribosomal protein S27a [Source:HGNC Symbol;Acc:HGN...	[more]
RPS27A	1.499e-21	42.18	ribosomal protein S27a [Source:HGNC Symbol;Acc:HGN...	[more]
RPS27A	1.499e-21	42.18	ribosomal protein S27a [Source:HGNC Symbol;Acc:HGN...	[more]
AL136454.1	1.797e-19	42.86	novel protein similar to ribosomal protein S27a RP...	[more]
AL136454.1	1.797e-19	42.86	novel protein similar to ribosomal protein S27a RP...	[more]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3


Match Name	E-value	Identity	Description
ubl-1	6.669e-20	40.54	Ubiquitin-like protein 1-40S ribosomal protein S27...	[more]
ubl-1	6.669e-20	40.54	Ubiquitin-like protein 1-40S ribosomal protein S27...	[more]
ubl-1	6.669e-20	40.54	Ubiquitin-like protein 1-40S ribosomal protein S27...	[more]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1


Match Name	E-value	Identity	Description
RpS27A	2.213e-21	42.18	gene:FBgn0003942 transcript:FBtr0080016	[more]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
rps27a	3.134e-21	42.18	ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-0...	[more]
rps27a	3.134e-21	42.18	ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-0...	[more]
rps27a	3.134e-21	42.18	ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-0...	[more]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2


Match Name	E-value	Identity	Description
rps27a	1.358e-21	42.18	ribosomal protein S27a [Source:NCBI gene;Acc:54892...	[more]
rps27a	3.724e-19	47.22	ribosomal protein S27a [Source:NCBI gene;Acc:54892...	[more]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2


Match Name	E-value	Identity	Description
Rps27a	3.456e-21	41.50	ribosomal protein S27A [Source:MGI Symbol;Acc:MGI:...	[more]
Rps27a	3.456e-21	41.50	ribosomal protein S27A [Source:MGI Symbol;Acc:MGI:...	[more]

BLAST of Ubiquitin-like domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P69061\|RS27A_KLULA	9.135e-24	45.52	Ubiquitin-40S ribosomal protein S27a OS=Kluyveromy...	[more]
sp\|P59271\|R27AA_ARATH	1.412e-23	42.38	Ubiquitin-40S ribosomal protein S27a-1 OS=Arabidop...	[more]
sp\|P79781\|RS27A_CHICK	6.821e-21	42.18	Ubiquitin-40S ribosomal protein S27a OS=Gallus gal...	[more]
sp\|P62979\|RS27A_HUMAN	7.197e-21	42.18	Ubiquitin-40S ribosomal protein S27a OS=Homo sapie...	[more]
sp\|P62978\|RS27A_CAVPO	7.197e-21	42.18	Ubiquitin-40S ribosomal protein S27a OS=Cavia porc...	[more]

BLAST of Ubiquitin-like domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A507DVW0	2.860e-23	44.90	Ubiquitin-like domain-containing protein OS=Powell...	[more]
A0A507EDP5	2.986e-23	44.90	Ubiquitin-like domain-containing protein OS=Powell...	[more]
A0A1K0H796	5.397e-23	42.28	Probable ubiquitin/ribosomal protein S27a fusion p...	[more]
A0A0U2V515	2.558e-22	42.86	40S ribosomal protein S27a OS=Acartia pacifica OX=...	[more]
A0A3G2S3X0	2.593e-22	42.28	40S ribosomal protein S27a OS=Malassezia restricta...	[more]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
rps27a	2.656e-21	42.18	ribosomal protein S27a [Source:NCBI gene;Acc:10304...	[more]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
ENSPMAT00000007011.1	1.446e-19	47.22	pep scaffold:Pmarinus_7.0:GL484716:14406:16135:-1 ...	[more]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
RPS31	2.638e-18	44.00	Fusion protein cleaved to yield ribosomal protein ...	[more]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO48503	1.101e-18	43.54	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Ubiquitin-like domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3


Match Name	E-value	Identity	Description
rps27a	4.902e-22	42.18	ribosomal protein S27a [Source:NCBI gene;Acc:10116...	[more]
rps27a	6.988e-17	36.26	ribosomal protein S27a [Source:NCBI gene;Acc:10116...	[more]
rps27a	3.352e-14	38.64	ribosomal protein S27a [Source:NCBI gene;Acc:10116...	[more]

BLAST of Ubiquitin-like domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2


Match Name	E-value	Identity	Description
SMESG000067884.1	1.183e-94	100.00	SMESG000067884.1	[more]
SMESG000048830.1	4.098e-15	41.83	SMESG000048830.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30035037 ID=SMED30035037|Name=Ubiquitin-like domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=499bp
TAATAAAAGTATTATTATTGAAAAATGGCAATTTTTGTAAAATATTTAGA
TAAAATTTTCACTGTTGAACTGTCCCAATTATGCAATATATCAGAAATTA
TTGAATCTGTTTGCAACCTTCGCAAGCAAGAACAGAAAATCGTCTACCAA
GGTCGACTGATTACTGACGTCAAAACGCTTCTGTCGGAAAATATCTGCAA
CGAGGATACCATTGAAGTGTTCGAGCGTTTGTGTGGTGGTAAAAATAAGC
GAAAAAAGAAGAATTTTACGACTCCTAAAAAGATTGCACATGTTCATAAA
AGTCAACCTTTAGCGATCTTGAAATCTTATTCAATAGACAAAGATGGAAA
TCTTACAAAATTGCGAGAAGAATGCCCAGAATGTGGTCCAGGGATTTTCC
TGGCTGAACACGCAGATAGAAGACATTGCGGAAAATGTTCCTTCACAGTT
TTCAAGGATCAAAGAAATATTTCTACTTAAATACTTTTTGAAGAAAAAA

protein sequence of SMED30035037-orf-1

>SMED30035037-orf-1 ID=SMED30035037-orf-1|Name=SMED30035037-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=152bp
MAIFVKYLDKIFTVELSQLCNISEIIESVCNLRKQEQKIVYQGRLITDVK
TLLSENICNEDTIEVFERLCGGKNKRKKKNFTTPKKIAHVHKSQPLAILK
SYSIDKDGNLTKLREECPECGPGIFLAEHADRRHCGKCSFTVFKDQRNIS
T*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000074	oocyte
PLANA:0000231	vitelline gland
PLANA:0002089	reproductive organ

Vocabulary: **INTERPRO**
Term	Definition
IPR038582	S27a-like_sf
IPR002906	Ribosomal_S27a
IPR000626	Ubiquitin-like_dom
IPR011332	Ribosomal_zn-bd
IPR029071	Ubiquitin-like_domsf

Vocabulary: **cellular component**
Term	Definition
GO:0005840	ribosome
GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0022627	cytosolic small ribosomal subunit
GO:0030529	intracellular ribonucleoprotein complex

Vocabulary: **biological process**
Term	Definition
GO:0006412	translation
GO:0000028	ribosomal small subunit assembly
GO:0002109	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S)
GO:0042254	ribosome biogenesis

Vocabulary: **molecular function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0031386	protein tag
GO:0046872	metal ion binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002906	Ribosomal protein S27a	SMART	SM01402	Ribosomal_S27_2	coord: 98..141 e-value: 6.6E-20 score: 82.1
IPR002906	Ribosomal protein S27a	PFAM	PF01599	Ribosomal_S27	coord: 98..141 e-value: 1.4E-18 score: 66.8
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 3..68 e-value: 1.0E-5 score: 25.2
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..72 score: 10.506
IPR038582	S27a-like superfamily	GENE3D	G3DSA:2.20.25.660		coord: 75..148 e-value: 8.5E-29 score: 101.8
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 1..72 e-value: 2.2E-8 score: 36.0
None	No IPR available	PANTHER	PTHR10666:SF328	RIBOSOMAL PROTEIN S27A	coord: 1..143
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 1..143
None	No IPR available	CDD	cd17039	Ubl_ubiquitin_like	coord: 3..66 e-value: 1.79579E-7 score: 43.739
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	SSF54236	Ubiquitin-like	coord: 1..92
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	SSF57829	Zn-binding ribosomal proteins	coord: 96..148