SMED30034943
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30034943 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 20Note: Hover over icons to view figure legend
Alignments
SMED30034943 aligns in the following genomic locations:
Homology
BLAST of SMED30034943 vs. TrEMBL
Match: A0A267ENF6 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig009342g1 PE=4 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 7.058e-14 Identity = 130/589 (22.07%), Postives = 253/589 (42.95%), Query Frame = 2 Query: 89 ILIFNNQNEPILNIYDD-YFYNLVILPSKARFGNDVEQTSIK--NVLMQLFSPIIASQNAMIDTLKTKFSAIDLFNGQTLILHNVYNCFLIILLSEK--CSFRQHTSIISKKLELIEWIICSFYGICWSQMKFNSERWLKIL--LQEMW-LMDNTEFNLMYTGIERIDLNSKLKINERVLEVLVSNSRYF--RQVNERKIKHQLIFVGSKLFSLHTSNEALSNFKAKDNLLFVIISNALFNRF-----SRAREPRVQENNLISDKDLTKNLIRSISKDNAANETPVSSSSSTDEFFIPELSDPEITSTVSKLSDSIKTNSITSTCSSVRDLD-------PFVLWID-NKDG-HKYRIVRIFHSTASGLLIPCNVHLIKLARNVIYIGVEEDLENNIQLPALEKSIRLLRKMISDFDKNSDFLSIIKTRIGQSIDKLHYL--------------GTIYGNQLRQNFRIV---LSRHSSSS------DLFERAIKELL---------KVFELIYCQYYISGTIKVNEKLCKSFLRCYSMVRKEMEDFLSILSIKAIRNLSPTSFYVLYPGLVHFIVKTRKLHNSLICPVVD 1687 +++FN+ N+ + D Y NL+ + ++ S + +VL+QLFSP++ + N ++ T ++ + + L N + ++ + +I + K C +K+L +E + S G + +K E ++ + W + E ++ +ER+ + +K + + S R F R+ ++H LI G+KL L+ S E S A+D L + + ALF +F SR +EP N ++ + + S ++ NE +S+ S P S + +T +++ + T+ ST SS ++ P V I+ NK + + + +F +T + L P H + + NV+++ +E +E +++ R + +S + D L+ ++ I + + L + + R V LSR + S DL+ A++ LL VFE ++ Q+ K+ +C++ RK+++D+L L +KA RNL+ +S Y GLVHF + R+ + ++ P D Sbjct: 4 LVVFNSVNDIVFCHADQAYLANLLAAYRGSNEAGEIAGVSRQTLDVLVQLFSPLLTTYN-LMRTQQSAYRRVVLANSEEVVFRRCEDFLMIGVFGSKTFCP-------PAKQLANVERQLRSLVGPYFETLKHYKEGAFSLVGSMVSGWKTLFTHELAFTFSAVERVKVEGSIKA-----KAIESIERGFQRRRRELSGVEHVLIVCGTKLLCLY-STERTSKLVAQDFLTLISLVPALFPKFDVYDESRYKEPEGATFNSCAEPTNSSSNSDVSSAFHSCNEFVLSAPHS------PRSSG--LATTPERINGAFGTSQRQSTSSSGSCIELEHNAHYPLVQQIELNKSSPSESKAMLVFLNTTTSTLSPFKAHFVPMTGNVVFLALEA-VEPRSVARLVDRMHRAADRALSHVSQPVDDLAAMQAAICAELHSVRRLLVELIRTLREPPGVAASFAPACERAMRDVNDHLSRAAPGSEHFRTVDLYLNAVENLLHKLKSSVMKGVFENLFLQF----PFKMTATVCQAVQDLAQACRKDLQDYLPFLDVKARRNLASSSVLANYIGLVHFALVDRR-SDEIVAPTPD 564
BLAST of SMED30034943 vs. TrEMBL
Match: A0A267DH76 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig009342g3 PE=4 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.017e-13 Identity = 130/589 (22.07%), Postives = 254/589 (43.12%), Query Frame = 2 Query: 89 ILIFNNQNEPILNIYDD-YFYNLVILPSKARFGNDVEQTSIK--NVLMQLFSPIIASQNAMIDTLKTKFSAIDLFNGQTLILHNVYNCFLIILLSEK--CSFRQHTSIISKKLELIEWIICSFYGICWSQMKFNSERWLKIL--LQEMW-LMDNTEFNLMYTGIERIDLNSKLKINERVLEVLVSNSRYF--RQVNERKIKHQLIFVGSKLFSLHTSNEALSNFKAKDNLLFVIISNALFNRF-----SRAREPRVQENNLISDKDLTKNLIRSISKDNAANETPVSSSSSTDEFFIPELSDPEITSTVSKLSDSIKTNSITSTCSSVRDLD-------PFVLWID-NKDG-HKYRIVRIFHSTASGLLIPCNVHLIKLARNVIYIGVEEDLENNIQLPALEKSIRLLRKMISDFDKNSDFLSIIKTRIGQSIDKLHYL--------------GTIYGNQLRQNFRIV---LSRHSSSS------DLFERAIKELL---------KVFELIYCQYYISGTIKVNEKLCKSFLRCYSMVRKEMEDFLSILSIKAIRNLSPTSFYVLYPGLVHFIVKTRKLHNSLICPVVD 1687 +++FN+ N+ + D Y NL+ + ++ S + +VL+QLFSP++ + N ++ T ++ + + L N + ++ + +I + K C +K+L +E + S G + +K E ++ + W + E ++ +ER+ + +K + + S R F R+ ++H LI G+KL L+ S E S A+D L + + ALF +F SR +EP N ++ + + S ++ NE +S++ S P S + +T +++ + T+ ST SS ++ P V I+ NK + + + +F +T + L P H + + NV+++ +E +E +++ R + +S + D L+ ++ I + + L + + R V LSR + S DL+ A++ LL VFE ++ Q+ K+ +C++ RK+++D+L L +KA RNL+ +S Y GLVHF + R+ + ++ P D Sbjct: 16 LVVFNSVNDIVFCHADQAYLANLLAAYRGSNEAGEIAGVSRQTLDVLVQLFSPLLTTYN-LMRTQQSAYRRVVLANSEEVVFRRCEDFLMIGVFGSKTFCP-------PAKQLANVERQLRSLVGPYFETLKHYKEGAFSLVGSMVSGWKTLFTHELAFTFSAVERVKVEGGIKA-----KAIESIERGFQRRRRELSGVEHVLIVCGTKLLCLY-STERTSKLVAQDFLTLISLVPALFPKFDVYDESRYKEPEGATFNSCAEPTNSSSNSDVSSAFHSCNEFVLSANHS------PRSSG--LATTPERINGAFGTSQRQSTSSSGSCIELEHNAHYPLVQQIELNKSSPSESKAMLVFLNTTTSTLSPFKAHFVPMTGNVVFLALEA-VEPRSVARLVDRMHRAADRALSHVSQPVDDLAAMQAAICAELHSVRRLLVELIRTLREPPGVAASFAPACERAMRDVNDHLSRAAPGSEHFRTVDLYLNAVENLLHKLKSSVMKGVFENLFLQF----PFKMTATVCQAVQDLAQACRKDLQDYLPFLDVKARRNLASSSVLANYIGLVHFALVDRR-SDEIVAPTPD 576
BLAST of SMED30034943 vs. TrEMBL
Match: A0A1W5BQS3 (Hermansky-Pudlak syndrome 1 protein homolog OS=Ciona intestinalis OX=7719 GN=LOC100180307 PE=4 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.301e-11 Identity = 117/554 (21.12%), Postives = 237/554 (42.78%), Query Frame = 2 Query: 197 QTSIKNVLMQLFSPIIASQNAMIDTLKTKFSAIDLFNGQTLILHNVYNCFLIILLSEKCSFRQHTSIISKKLELIEWIICSFYGICW------SQMKFNSERW--LKILLQEMWLMDNTEFNLMYTGIERIDLNSKLKINERVLEVLVSNSRYFRQV-NERKIKHQLIFVGSKLFSLHTSNEALSNFKAKDNLLFVIISNALFNRFSRAREPRVQENNLISDKDLTKNLIRSISKDNAANETPVSSSSSTDEFFIPELSDPEITSTVSKLSDS-IKTNSITSTCSSVRDL---DPFVLWIDNK---------DGH---------KYRIVRIFHSTASGLLIPCNVHLIKLAR--NVIYIGVEEDLENNIQLPALEKS------IRLLRKM---------------ISDFDKNSDFLSIIKTR--IGQSIDKLHYLGTIYGNQLRQNFRI-VLSRHSSSSDLFERAIK----ELLKVFELIYCQYYISGTIKVN-EKLCKSFLRCYSMVRKEMEDFLSILSIKAIRNLSPTSFYVLYPGLVHF--IVKTRKLHNS 1666 ++S + + F P+ S + L S++ + T+++ + F+ I + CS + +S++L + I +G C +Q+ W + +LQ+ + E + + G+ERI +N +N+ V+ + + F + N +++ L+FVG+K+ +LH S+ A N ++ L + +S+ + E + N + SD +L + I S + + P S+ +E P ++TS LS + ++ + T SSVR D V + N D H K + ++ +T +P ++ I ++ N+++I ++P E S + LLRK+ +++ +K S L + KTR G+S +L L + + + ++N + V + + + L E ++ +L + F+ ++ Y S + + LCK Y + ++ D+ L +K RN++ + + YPGLVHF +++TR+ S Sbjct: 39 ESSFDSYIQMYFLPVFLSHQMLKSQLNEACSSVSSDDQDTVVVFQDFQEFVYIAVETSCSGGKEK--LSRELSFLRNSISFLFGACGHSELKTTQVTTKERAWHSVTTILQQYTSLCELENSFLLEGVERIRVNED--VNKVCNTVIQKSMKSFESLSNLHNVQYGLVFVGAKILTLHASSRARYNLSTQNILQIITLSSLGSGQTDSEHEVK---NEVRSDSELESSEIPS----DIGLDLPFIPSTDDEEDVFPPQEPKDLTSDAGPLSSTGSQSQNETELGSSVRSQYSEDSQVTSVSNNSIRMVNNHFDAHGKENASFNIKNTCIPVYLTTPEHPCLPHLLYCIPISDQVNLVFI---------FKVPHSEVSDMVCGMLDLLRKLKFSDRKLEVIGGQTTVNNLEKCSKLL-VQKTRELKGKSRSRLKRLTSSWNSNGQRNLNMFVNTGNGEYTKLLETCVRDTKEQLRRFFQSLFPSYLTSDATQWHTADLCK----IYKFAKAKLTDYTEYLHVKCTRNITMSPYLATYPGLVHFSLVLRTREQTGS 567
BLAST of SMED30034943 vs. TrEMBL
Match: A0A158NZG2 (Uncharacterized protein OS=Atta cephalotes OX=12957 GN=105626226 PE=4 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.941e-10 Identity = 117/533 (21.95%), Postives = 225/533 (42.21%), Query Frame = 2 Query: 212 NVLMQLFSPIIASQNAMIDTLKTKFSAIDLFNGQTLILHNVYNCFLIILLSEKCSFRQHTSIISKKLELIEWIICSFYGICWSQMKFNSERWLKILLQEMWL-----MDNTEFNLMYTGIERIDLNSKLKINERVLEVLVSNSRYFRQV-NERKIKHQLIFVGSKLFSLHTSNEALSNFKAKDNLLFVIISNALFNRFSRAREPRVQENNLISDKDLTKNLIRSISKDNAANET--PVSSSSSTDEF---FIPELSDPEITSTVSKLSDSIKTNSITSTCSSVRDLDPF--VLWIDNKDGHKYRIVRIFHSTASGLLIPCNVHLIKLARNVIYIGVEE-----DLENNIQL--------PALEKSIRLLRKMISDFDKNSDFLSIIKTRIGQSID--------KLHYLGTIYGNQLR-QNFRIVLSRHSSSSDLFERAIKELLKVFELIYCQYYISGTIKVNEKLCKSFLRCYSMVRKEMEDFLSILSIKAIRNLSPTSFYVL------YPGLVHFIVKTRKLHNSLICPVVD 1687 N++MQLFSPI+ SQ+ M ++++ +G ++ + + ++ +HT + + +C + W K+ L L + N E +++ +E++ +N+ ++ VL+VL + +E H L+ VGSK SL++S A + A D LL +++ I +K +N +S S DN ++ P SS +DE F +L+ P + ++ L + +S+ SS+ D D + + + + V +F + S LI +++ I G+ + +L NN+Q PA E ++K++ KN ++ +G +D K ++ Y + LR ++ +VL +++S E +KELL++ + + ++ I V + + +VR+++ DF L +KA++N + S + +PGLVHFI R H L+ P +D Sbjct: 53 NIIMQLFSPIVTSQHVMASQFGNSYTSMKFQDGTNMVFDEYIGYTFMYIAAKDVELMRHT---------LGVCVSIVQHVCGPDIAILKTNWQKMCLVSSLLDAWSNLRNCEQSMLTEAVEQLSVNA--EVASSVLKVLHDACDKLKNSQSEFSNLHLLLLVGSKFLSLYSSKNA-HDLYASDILLMILLC-------------------WIVNKKRKQN--QSESNDNCCDDILLPESSVLKSDETKLNFGAKLATP-TSEDITDLFRGSRESSVNEGLSSLTDDDLYSQSFLLGCQHNYTANAVHVFELSDSINLIT----IVEATNLSISSGLCDSFHYLNLINNLQFQRDIDEMKPAFEHLDVAIKKVLEGIKKN-------RSNVGNDVDMCQKRLQTKWDFVRKKYSDLLRSRDPEVVLQIEANTSGFVE-TLKELLRL--TCFDKNFLKQGIDVLTTVGR-------LVRQKLNDFSDFLKVKALKNFTLGSSLTINKYLEEFPGLVHFIYIDRNTHR-LVAPTLD 529
BLAST of SMED30034943 vs. TrEMBL
Match: A0A3L8DPX6 (Uncharacterized protein OS=Ooceraea biroi OX=2015173 GN=DMN91_004735 PE=4 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.774e-9 Identity = 116/554 (20.94%), Postives = 236/554 (42.60%), Query Frame = 2 Query: 86 SILIFNNQNEPILNIYDDYFYNLVILPSKARFGNDVEQTS-------IKNVLMQLFSPIIASQNAMIDTLKTKFSAIDLFNGQTLILHNVYNCFLIILLSEKCSFRQHTSIISKKLELIEWIICSFYGICWSQMKFNSERWLKILLQEMWL-----MDNTEFNLMYTGIERIDLNSK-----LKINERVLEVLVSNSRYFRQVNERKIKHQLIFVGSKLFSLHTSNEALSNFKAKDNLLFVIISNALFNRFSRAREPRVQENNLISDKDLTKNLIRSISKDNAANETPVSSSSSTDEF---FIPELSDPEITSTVSKLSDSIKTNSITSTCSSVRDLDPF--VLWIDNKDGHKYRIVRIFH----------------STASGLLIPCN-VHLIKLARNVIYIGVEEDLENNIQLPALEKSIRLLRKMISDFDKNSDFLSIIKTRIGQSID--------KLHYLGTIYGNQLRQNFRIVLSRHSSSSDLFERAIKELLKVFELIYCQYYISGTIKVNEKLCKSFLRCYSMVRKEMEDFLSILSIKAIRNLSPTSF 1606 +ILIF+N N+ + D F + ++ +K + D + TS N++MQLFSPI+ SQ+ M ++++ +G ++ + + +++ + T I + ++ +C + W K L L + N E +++ IE++ +N++ LK+ + L S+ F + H LI VGSK SL++S A + A D LL +++ + + ++ R+ + N+ +D D+ P +S+S +DE F +L+ P + ++ L + +S+ SS+ D D + +L + + + V IF ST+SGL C+ H + + N+ + ++L+ PA E ++K++ KN ++ +G +D K ++ Y + LR V+ + +++ F +KELL++ + + ++ I V + + +VR+++ DF L +KA++N + S+ Sbjct: 3 AILIFDNLNDVLFVKCDKKFASHILKLAKTQGLLDDKDTSNLENSIPSPNIIMQLFSPIVTSQHLMASQFGNSYTSMKFQDGTNMVFDEYIGYTFMYIAAKEIDLMRRT--IGVGVSIVRH-------VCGPDVAILKTNWQKACLVSSLLDAWSDLRNYEQSMLIEAIEQLSVNTEVASSVLKVLHDACDKLKSSQAEFSNL------HMLILVGSKFLSLYSSKNA-HDLCASDILLMILLCSVI----NKKRKRDSENNDESNDNDIL---------------LPDNSASKSDEVKINFGAKLATP-TSEDITDLFKGSRESSVNENLSSLTDEDLYSQLLLLGCQHNYTANTVHIFELSDSINLITIVEATNLSTSSGL---CDSFHYLDVINNLQFQRAFDELK-----PAFENLDGAIKKVLEGIRKN-------RSNVGNDVDMCQKRLQTKWDFVRKKYNDLLRSRDPEVILQIEANTTGFVETLKELLRL--TCFDRNFLKQGIDVLTTVGR-------LVRQKLNDFSDFLKVKALKNFTLGSY 496
BLAST of SMED30034943 vs. Planmine SMEST
Match: SMESG000013014.1 (SMESG000013014.1) HSP 1 Score: 1283.09 bits (3319), Expect = 0.000e+0 Identity = 629/630 (99.84%), Postives = 630/630 (100.00%), Query Frame = 2 Query: 80 FHSILIFNNQNEPILNIYDDYFYNLVILPSKARFGNDVEQTSIKNVLMQLFSPIIASQNAMIDTLKTKFSAIDLFNGQTLILHNVYNCFLIILLSEKCSFRQHTSIISKKLELIEWIICSFYGICWSQMKFNSERWLKILLQEMWLMDNTEFNLMYTGIERIDLNSKLKINERVLEVLVSNSRYFRQVNERKIKHQLIFVGSKLFSLHTSNEALSNFKAKDNLLFVIISNALFNRFSRAREPRVQENNLISDKDLTKNLIRSISKDNAANETPVSSSSSTDEFFIPELSDPEITSTVSKLSDSIKTNSITSTCSSVRDLDPFVLWIDNKDGHKYRIVRIFHSTASGLLIPCNVHLIKLARNVIYIGVEEDLENNIQLPALEKSIRLLRKMISDFDKNSDFLSIIKTRIGQSIDKLHYLGTIYGNQLRQNFRIVLSRHSSSSDLFERAIKELLKVFELIYCQYYISGTIKVNEKLCKSFLRCYSMVRKEMEDFLSILSIKAIRNLSPTSFYVLYPGLVHFIVKTRKLHNSLICPVVDQDYLSDFKIQRLHLLADLCQKIGTQMELSSTWRHIEICDRYFRCTYVKQKYKILEDKYHEFELTVFHLSEVSLSLVKKQISLLMNQFLPDQRGA 1969 FHSILIFNNQNEPILNIYDDYFYNLVILPSKARFGNDVEQTSIKNVLMQLFSPIIASQNAMIDTLKTKFSAIDLFNGQTLILHNVYNCFLIILLSEKCSFRQHTSIISKKLELIEWIICSFYGICWSQMKFNSERWLKILLQEMWLMDNTEFNLMYTGIERIDLNSKLKINERVLEVLVSNSRYFRQVNERKIKHQLIFVGSKLFSLHTSNEALSNFKAKDNLLFVIISNALFNRFSRAREPRVQENNLISDKDLTKNLIRSISKDNAANETPVSSSSSTDEFFIPELSDPEITSTVSKLSDSIKTNSITSTCSSVRDLDPFVLWIDNKDGHKYRIVRIFHS+ASGLLIPCNVHLIKLARNVIYIGVEEDLENNIQLPALEKSIRLLRKMISDFDKNSDFLSIIKTRIGQSIDKLHYLGTIYGNQLRQNFRIVLSRHSSSSDLFERAIKELLKVFELIYCQYYISGTIKVNEKLCKSFLRCYSMVRKEMEDFLSILSIKAIRNLSPTSFYVLYPGLVHFIVKTRKLHNSLICPVVDQDYLSDFKIQRLHLLADLCQKIGTQMELSSTWRHIEICDRYFRCTYVKQKYKILEDKYHEFELTVFHLSEVSLSLVKKQISLLMNQFLPDQRGA Sbjct: 8 FHSILIFNNQNEPILNIYDDYFYNLVILPSKARFGNDVEQTSIKNVLMQLFSPIIASQNAMIDTLKTKFSAIDLFNGQTLILHNVYNCFLIILLSEKCSFRQHTSIISKKLELIEWIICSFYGICWSQMKFNSERWLKILLQEMWLMDNTEFNLMYTGIERIDLNSKLKINERVLEVLVSNSRYFRQVNERKIKHQLIFVGSKLFSLHTSNEALSNFKAKDNLLFVIISNALFNRFSRAREPRVQENNLISDKDLTKNLIRSISKDNAANETPVSSSSSTDEFFIPELSDPEITSTVSKLSDSIKTNSITSTCSSVRDLDPFVLWIDNKDGHKYRIVRIFHSSASGLLIPCNVHLIKLARNVIYIGVEEDLENNIQLPALEKSIRLLRKMISDFDKNSDFLSIIKTRIGQSIDKLHYLGTIYGNQLRQNFRIVLSRHSSSSDLFERAIKELLKVFELIYCQYYISGTIKVNEKLCKSFLRCYSMVRKEMEDFLSILSIKAIRNLSPTSFYVLYPGLVHFIVKTRKLHNSLICPVVDQDYLSDFKIQRLHLLADLCQKIGTQMELSSTWRHIEICDRYFRCTYVKQKYKILEDKYHEFELTVFHLSEVSLSLVKKQISLLMNQFLPDQRGA 637 The following BLAST results are available for this feature:
BLAST of SMED30034943 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30034943 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30034943 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30034943 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30034943 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30034943 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30034943 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30034943 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30034943 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30034943 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30034943 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30034943 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30034943 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30034943 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30034943 ID=SMED30034943|Name=SMED30034943|organism=Schmidtea mediterranea sexual|type=transcript|length=2017bpback to top protein sequence of SMED30034943-orf-1 >SMED30034943-orf-1 ID=SMED30034943-orf-1|Name=SMED30034943-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=647bp MESNNEIFHSILIFNNQNEPILNIYDDYFYNLVILPSKARFGNDVEQTSIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|