Tubulin beta chain

Overview
NameTubulin beta chain
Smed IDSMED30034805
Length (bp)374
Neoblast Clusters

Zeng et. al., 2018



 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30034805

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
testisSMED30034805SMESG000000234.1 SMESG000000199.1 PL06022B2C01_SE3GPL10652PMID:20844018
Wang et al., 2010		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
early male germ cellSMED30034805SMESG000000234.1 SMESG000000199.1 PL06022B2C01_SE3GPL10652PMID:20844018
Wang et al., 2010		whole organism asexual adult cDNA to DNA expression microarray evidence
testis primordiumSMED30034805SMESG000000234.1 SMESG000000199.1 PL06022B2C01_SE3GPL10652PMID:20844018
Wang et al., 2010		whole organism juvenile cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Tubulin beta chain vs. Ensembl Human
Match: TUBB4A (tubulin beta 4A class IVa [Source:HGNC Symbol;Acc:HGNC:20774])

HSP 1 Score: 181.8 bits (460), Expect = 2.760e-60
Identity = 77/107 (71.96%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGG YVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Human
Match: TUBB4A (tubulin beta 4A class IVa [Source:HGNC Symbol;Acc:HGNC:20774])

HSP 1 Score: 182.57 bits (462), Expect = 9.207e-60
Identity = 77/107 (71.96%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGG YVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:   46 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 152
[Close]
BLAST of Tubulin beta chain vs. Ensembl Human
Match: TUBB4A (tubulin beta 4A class IVa [Source:HGNC Symbol;Acc:HGNC:20774])

HSP 1 Score: 179.874 bits (455), Expect = 8.038e-59
Identity = 76/106 (71.70%), Postives = 92/106 (86.79%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHY 371
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGG YVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHY
Sbjct:   52 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHY 157
[Close]
BLAST of Tubulin beta chain vs. Ensembl Human
Match: TUBB4B (tubulin beta 4B class IVb [Source:HGNC Symbol;Acc:HGNC:20771])

HSP 1 Score: 186.422 bits (472), Expect = 6.180e-58
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Human
Match: TUBB2B (tubulin beta 2B class IIb [Source:HGNC Symbol;Acc:HGNC:30829])

HSP 1 Score: 185.267 bits (469), Expect = 1.880e-57
Identity = 78/107 (72.90%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATG KYVPRAIL DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Celegans
Match: ben-1 (Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:Q18817])

HSP 1 Score: 186.422 bits (472), Expect = 2.234e-58
Identity = 79/107 (73.83%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV+VQ GQCGNQ+G KFWE++SDEHG+ P G Y+GESDLQLERINVYY EA GGKYVPRA+L DLEP TM+++R  P+GQLFRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDLQLERINVYYNEANGGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Celegans
Match: tbb-4 (Tubulin beta-4 chain [Source:UniProtKB/Swiss-Prot;Acc:P41937])

HSP 1 Score: 186.037 bits (471), Expect = 3.982e-58
Identity = 78/107 (72.90%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EA+GGKYVPRA L DLEP TM+++R  P+GQLFRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDLQLERINVYYNEASGGKYVPRACLVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Celegans
Match: tbb-1 (Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:O17921])

HSP 1 Score: 182.185 bits (461), Expect = 1.234e-56
Identity = 76/107 (71.03%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV+VQ GQCGNQ+G+KFWE++SDEHG+ P G ++GESDLQLERI+VYY EA  GKYVPRA+L DLEP TM+++R  P+GQLFRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDLQLERIDVYYNEANNGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Celegans
Match: tbb-1 (Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:O17921])

HSP 1 Score: 182.185 bits (461), Expect = 1.234e-56
Identity = 76/107 (71.03%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV+VQ GQCGNQ+G+KFWE++SDEHG+ P G ++GESDLQLERI+VYY EA  GKYVPRA+L DLEP TM+++R  P+GQLFRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDLQLERIDVYYNEANNGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Celegans
Match: tbb-2 (Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:P52275])

HSP 1 Score: 181.03 bits (458), Expect = 3.058e-56
Identity = 75/107 (70.09%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV+VQ GQCGNQ+G+KFWE++SDEHG+ P G ++GE+DLQLERI+VYY EA  GKYVPRA+L DLEP TM+++R  P+GQLFRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQLERIDVYYNEANNGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Fly
Match: betaTub56D (gene:FBgn0284243 transcript:FBtr0086536)

HSP 1 Score: 183.341 bits (464), Expect = 5.434e-57
Identity = 77/107 (71.96%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWEI+SDEHG+D  G Y G+SDLQLERINVYY EA+GGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDATGAYHGDSDLQLERINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Fly
Match: betaTub97EF (gene:FBgn0003890 transcript:FBtr0334906)

HSP 1 Score: 179.104 bits (453), Expect = 2.755e-55
Identity = 77/107 (71.96%), Postives = 92/107 (85.98%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G+KFWEI+SDEHG+DP G Y GES LQ ERI+VYY EA+ GKYVPRA+L DLEP TM+++R SP GQLFRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGSKFWEIISDEHGIDPNGYYHGESALQHERIDVYYNEASSGKYVPRAVLIDLEPGTMDSVRQSPVGQLFRPDNFVYGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Fly
Match: betaTub97EF (gene:FBgn0003890 transcript:FBtr0300611)

HSP 1 Score: 179.104 bits (453), Expect = 3.065e-55
Identity = 77/107 (71.96%), Postives = 92/107 (85.98%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G+KFWEI+SDEHG+DP G Y GES LQ ERI+VYY EA+ GKYVPRA+L DLEP TM+++R SP GQLFRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGSKFWEIISDEHGIDPNGYYHGESALQHERIDVYYNEASSGKYVPRAVLIDLEPGTMDSVRQSPVGQLFRPDNFVYGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Fly
Match: betaTub85D (gene:FBgn0003889 transcript:FBtr0082046)

HSP 1 Score: 175.252 bits (443), Expect = 5.612e-54
Identity = 75/107 (70.09%), Postives = 90/107 (84.11%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEH +D  G Y G+SDLQLERINVYY EATG KYVPRAIL DLEP TM+++R   +GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGGKFWEVISDEHCIDATGTYYGDSDLQLERINVYYNEATGAKYVPRAILVDLEPGTMDSVRSGAFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Fly
Match: betaTub60D (gene:FBgn0003888 transcript:FBtr0343443)

HSP 1 Score: 174.866 bits (442), Expect = 1.057e-53
Identity = 78/112 (69.64%), Postives = 93/112 (83.04%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEAT-----GGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV +Q GQCGNQ+G KFWEI+S+EHG+D  G+Y G+SDLQLER++VYY EA+     GGKYVPRAIL DLEP TME++R  PYGQLFRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVNLQAGQCGNQIGAKFWEIISEEHGIDSNGIYVGDSDLQLERVSVYYNEASVTRSSGGKYVPRAILLDLEPGTMESVRSGPYGQLFRPDNFVYGQSGAGNNWAKGHYT 112
[Close]
BLAST of Tubulin beta chain vs. Ensembl Zebrafish
Match: zgc:55461 (zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879])

HSP 1 Score: 186.422 bits (472), Expect = 8.709e-60
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Zebrafish
Match: zgc:55461 (zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879])

HSP 1 Score: 186.422 bits (472), Expect = 8.709e-60
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Zebrafish
Match: zgc:55461 (zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879])

HSP 1 Score: 186.037 bits (471), Expect = 4.710e-58
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Zebrafish
Match: zgc:55461 (zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879])

HSP 1 Score: 186.422 bits (472), Expect = 4.716e-58
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Zebrafish
Match: zgc:55461 (zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879])

HSP 1 Score: 186.422 bits (472), Expect = 4.716e-58
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Xenopus
Match: reps2 (RALBP1 associated Eps domain containing 2 [Source:Xenbase;Acc:XB-GENE-985000])

HSP 1 Score: 186.422 bits (472), Expect = 5.542e-58
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Xenopus
Match: ubxn11 (UBX domain protein 11 [Source:Xenbase;Acc:XB-GENE-985480])

HSP 1 Score: 185.267 bits (469), Expect = 1.615e-57
Identity = 77/107 (71.96%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EA+GGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Xenopus
Match: tubb (tubulin beta class I [Source:NCBI gene;Acc:448742])

HSP 1 Score: 184.496 bits (467), Expect = 3.307e-57
Identity = 77/107 (71.96%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQL+RI+VYY EATGGKYVPRAIL DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Xenopus
Match: znf330 (zinc finger protein 330 [Source:Xenbase;Acc:XB-GENE-1010548])

HSP 1 Score: 184.111 bits (466), Expect = 4.369e-57
Identity = 77/107 (71.96%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATG K+VPRAIL DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKFVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Xenopus
Match: tubb3 (tubulin beta 3 class III [Source:NCBI gene;Acc:395045])

HSP 1 Score: 174.096 bits (440), Expect = 3.109e-53
Identity = 75/107 (70.09%), Postives = 90/107 (84.11%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERI+VYY EA+  KYVPRAIL DLEP TM+++R   +G LFRPDNFI+G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPCGNYIGDSDLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Mouse
Match: Tubb4b (tubulin, beta 4B class IVB [Source:MGI Symbol;Acc:MGI:1915472])

HSP 1 Score: 186.422 bits (472), Expect = 4.243e-58
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Mouse
Match: Tubb2b (tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960])

HSP 1 Score: 185.267 bits (469), Expect = 1.291e-57
Identity = 78/107 (72.90%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATG KYVPRAIL DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Mouse
Match: Tubb4a (tubulin, beta 4A class IVA [Source:MGI Symbol;Acc:MGI:107848])

HSP 1 Score: 184.496 bits (467), Expect = 2.133e-57
Identity = 77/107 (71.96%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGG YVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Mouse
Match: Tubb5 (tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812])

HSP 1 Score: 184.496 bits (467), Expect = 2.505e-57
Identity = 77/107 (71.96%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQL+RI+VYY EATGGKYVPRAIL DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Mouse
Match: Tubb2a (tubulin, beta 2A class IIA [Source:MGI Symbol;Acc:MGI:107861])

HSP 1 Score: 183.726 bits (465), Expect = 5.241e-57
Identity = 77/107 (71.96%), Postives = 92/107 (85.98%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EA G KYVPRAIL DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. UniProt/SwissProt
Match: sp|P86221|TBB4B_MESAU (Tubulin beta-4B chain (Fragments) OS=Mesocricetus auratus OX=10036 GN=TUBB4B PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 7.605e-59
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. UniProt/SwissProt
Match: sp|P07436|TBB1_PHYPO (Tubulin beta-1 chain OS=Physarum polycephalum OX=5791 GN=BETA PE=1 SV=4)

HSP 1 Score: 188.348 bits (477), Expect = 9.502e-58
Identity = 79/107 (73.83%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y GESDLQLERINVYY EATGGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGESDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGPFGQIFRPDNFVFGQTGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. UniProt/SwissProt
Match: sp|P34108|TBB_NAEPR (Tubulin beta chain OS=Naegleria pringsheimi OX=234921 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.635e-57
Identity = 79/107 (73.83%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGG+YVPRAIL DLEP TM+++R  PYGQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGVDPTGAYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. UniProt/SwissProt
Match: sp|O17449|TBB1_MANSE (Tubulin beta-1 chain OS=Manduca sexta OX=7130 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.797e-57
Identity = 79/107 (73.83%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWEI+SDEHG+DP G Y G+SDLQLERINVYY EA+GGKYVPRAIL DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. UniProt/SwissProt
Match: sp|Q9ZSW1|TBB1_CYAPA (Tubulin beta-1 chain OS=Cyanophora paradoxa OX=2762 GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.875e-57
Identity = 81/107 (75.70%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV+VQ GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGG+YVPRA+L DLEP TM+++R  PYGQLFRPDNFI+G  G+ NNWAKGHYT
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. TrEMBL
Match: A0A183L5E4 (Tubulin beta chain OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS22558 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 4.474e-59
Identity = 81/107 (75.70%), Postives = 96/107 (89.72%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++QVGQCGNQ+G+KFWE++SDEHG+DP G YRG+SDLQLERINVYY EA GGKYVPRAIL DLEP TM+++R  P+GQLFRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQVGQCGNQIGSKFWEVISDEHGIDPTGAYRGDSDLQLERINVYYNEAMGGKYVPRAILVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. TrEMBL
Match: A0A183NMA7 (Tubulin beta chain OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS3243 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 4.710e-59
Identity = 81/107 (75.70%), Postives = 96/107 (89.72%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++QVGQCGNQ+G+KFWE++SDEHG+DP G YRG+SDLQLERINVYY EA GGKYVPRAIL DLEP TM+++R  P+GQLFRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQVGQCGNQIGSKFWEVISDEHGIDPTGAYRGDSDLQLERINVYYNEAMGGKYVPRAILVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. TrEMBL
Match: A0A183A726 (Tubulin domain-containing protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS2761 PE=4 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.793e-59
Identity = 80/107 (74.77%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRAIL DLEP TM+++R  P+GQLFRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. TrEMBL
Match: W6UQH5 (Tubulin beta chain OS=Echinococcus granulosus OX=6210 GN=EGR_02075 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.174e-58
Identity = 80/107 (74.77%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV+VQ GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRA+L DLEP TM+++R  P+GQLFRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. TrEMBL
Match: A0A1D2MQX8 (Tubulin beta-4B chain (S) OS=Orchesella cincta OX=48709 GN=Ocin01_11160 PE=4 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.466e-58
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWEI+SDEHG+DP G Y G+SDLQLERINVYY EA+GGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Cavefish
Match: zgc:55461 (tubulin beta-4B chain [Source:NCBI gene;Acc:103024068])

HSP 1 Score: 186.422 bits (472), Expect = 4.083e-58
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGAYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Cavefish
Match: TUBB2A (tubulin beta-2A chain [Source:NCBI gene;Acc:103041736])

HSP 1 Score: 183.726 bits (465), Expect = 2.380e-56
Identity = 78/112 (69.64%), Postives = 95/112 (84.82%), Query Frame = 3 
Query:   39 EYQPAMREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            E Q  MREIV++Q GQCGNQ+G KFWE++SDEHG+D  G Y+GES+LQLERINVYY EATG K+VPRAIL DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:   73 EQQNNMREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGSYQGESELQLERINVYYNEATGSKFVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 184
[Close]
BLAST of Tubulin beta chain vs. Ensembl Cavefish
Match: ENSAMXT00000040211.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000026.1:1408258:1413855:-1 gene:ENSAMXG00000041772.1 transcript:ENSAMXT00000040211.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 159.844 bits (403), Expect = 1.065e-51
Identity = 67/93 (72.04%), Postives = 83/93 (89.25%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWG 332
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQL+RI+VYY EATGGKYVPRAIL DLEP TM+++R  P+GQ+FRPDNF++G
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFG 93
[Close]
BLAST of Tubulin beta chain vs. Ensembl Cavefish
Match: ENSAMXT00000034689.1 (pep primary_assembly:Astyanax_mexicanus-2.0:24:9903821:9908953:1 gene:ENSAMXG00000030398.1 transcript:ENSAMXT00000034689.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 159.458 bits (402), Expect = 1.139e-51
Identity = 67/103 (65.05%), Postives = 86/103 (83.50%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAK 362
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQL+RINVYY EA+GGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G    S   ++
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLDRINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGITTHSGQISR 103
[Close]
BLAST of Tubulin beta chain vs. Ensembl Cavefish
Match: ENSAMXT00000036235.1 (pep primary_assembly:Astyanax_mexicanus-2.0:6:34530374:34536014:1 gene:ENSAMXG00000040542.1 transcript:ENSAMXT00000036235.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 158.303 bits (399), Expect = 3.593e-51
Identity = 68/101 (67.33%), Postives = 86/101 (85.15%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNW 356
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQL+RINVYY EA+GGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G +    NW
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFVFGDK----NW 97
[Close]
BLAST of Tubulin beta chain vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009623.1 (pep scaffold:Pmarinus_7.0:GL485233:4234:10583:1 gene:ENSPMAG00000008696.1 transcript:ENSPMAT00000009623.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 166.392 bits (420), Expect = 2.021e-54
Identity = 72/108 (66.67%), Postives = 90/108 (83.33%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRG-ESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV+VQ GQCGNQ+G+KFWE++S+EHG+D  G YRG  + LQ+ERINVYY+EAT GK+VPRAI+ DLEP TM+ +R  P G +FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHVQAGQCGNQVGSKFWEVISEEHGIDRTGSYRGYNARLQMERINVYYSEATSGKFVPRAIMVDLEPGTMDAVRSGPLGHMFRPDNFVFGQSGAGNNWAKGHYT 108
[Close]
BLAST of Tubulin beta chain vs. Ensembl Sea Lamprey
Match: tubb2 (tubulin, beta 2A class IIa [Source:ZFIN;Acc:ZDB-GENE-050522-384])

HSP 1 Score: 153.68 bits (387), Expect = 6.064e-47
Identity = 64/89 (71.91%), Postives = 78/89 (87.64%), Query Frame = 3 
Query:  108 KFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            +FWE++SDEHG+DP G Y G+SDLQLERINVYY EA+GGKYVPRAIL DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 QFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 89
[Close]
BLAST of Tubulin beta chain vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005307.1 (pep scaffold:Pmarinus_7.0:GL485425:14485:17012:-1 gene:ENSPMAG00000004835.1 transcript:ENSPMAT00000005307.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 95.1301 bits (235), Expect = 1.190e-26
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 3 
Query:   57 REIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQ--LERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            RE + + VGQ G Q+G   WE+   EHG+ P G    E  +    +  N +++E   GK+VPRA+  DLEP+ +  +R   Y QLF P+  I G   ++NN+A+GHYT
Sbjct:    2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSEKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVGAVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 109
[Close]
BLAST of Tubulin beta chain vs. Ensembl Sea Lamprey
Match: TUBA3C (tubulin alpha 3c [Source:HGNC Symbol;Acc:HGNC:12408])

HSP 1 Score: 98.2117 bits (243), Expect = 5.670e-26
Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQL----ERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MRE + + VGQ G Q+G   WE+   EHG+ P G  +  SD  +    +  N +++E   GK+VPRA+  DLEP+ ++ +R   Y QLF P+  I G   ++NN+A+GHYT
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDG--QMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 109
[Close]
BLAST of Tubulin beta chain vs. Ensembl Sea Lamprey
Match: tubg1 (tubulin, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-836])

HSP 1 Score: 97.4413 bits (241), Expect = 2.693e-25
Identity = 43/106 (40.57%), Postives = 65/106 (61.32%), Query Frame = 3 
Query:   57 REIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGAR--GSSNNWAKGH 368
            REI+ +Q+GQCGNQ+G +FW+ +  EHG+ P G+    +    +R +V++ +A    Y+PRA+L DLEP  + +I  S Y  L+ P+N        G+ NNWA GH
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPDGILEDFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVINSIVNSSYANLYNPENIYLSEHGGGAGNNWASGH 108
[Close]
BLAST of Tubulin beta chain vs. Ensembl Yeast
Match: TUB2 (Beta-tubulin; associates with alpha-tubulin (Tub1p and Tub3p) to form tubulin dimer, which polymerizes to form microtubules; mutation in human ortholog is associated with congenital fibrosis of the extraocular muscles (CFEOM) with polymicrogyria [Source:SGD;Acc:S000001857])

HSP 1 Score: 144.05 bits (362), Expect = 8.454e-43
Identity = 61/107 (57.01%), Postives = 78/107 (72.90%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREI+++  GQCGNQ+G  FWE +  EHGLD  G Y G  D+Q ER+NVY+ EA+ GK+VPR+I  DLEP T++ +R S  G LFRPDN+I+G   + N WAKGHYT
Sbjct:    1 MREIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Yeast
Match: TUB1 (Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; relative distribution to nuclear foci increases upon DNA replication stress; TUB1 has a paralog, TUB3, that arose from the whole genome duplication [Source:SGD;Acc:S000004550])

HSP 1 Score: 97.8265 bits (242), Expect = 1.153e-25
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRG-LYRGESDLQ--LERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MRE++ + VGQ G Q+G   WE+ S EHG+ P G L  G S  +   E  + ++ E   GK+VPRAI  DLEP+ ++ +R  PY  LF P+  I G   ++NN+A+GHYT
Sbjct:    1 MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYT 110
[Close]
BLAST of Tubulin beta chain vs. Ensembl Yeast
Match: TUB3 (Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; expressed at lower level than Tub1p; TUB3 has a paralog, TUB1, that arose from the whole genome duplication [Source:SGD;Acc:S000004593])

HSP 1 Score: 89.3521 bits (220), Expect = 1.250e-22
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRG-LYRGESDLQ--LERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MRE++ + VGQ G Q+G   WE+ S EHG+   G L  G S  +   E  + ++ E   GK+VPRAI  DLEP+ ++ +R   + +LF P+  I G   ++NN+A+GHYT
Sbjct:    1 MREVISINVGQAGCQIGNACWELYSLEHGIKEDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRTGRFKELFHPEQLINGKEDAANNYARGHYT 110
[Close]
BLAST of Tubulin beta chain vs. Ensembl Yeast
Match: TUB4 (Gamma-tubulin; involved in nucleating microtubules from both the cytoplasmic and nuclear faces of the spindle pole body; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000004202])

HSP 1 Score: 63.5438 bits (153), Expect = 1.798e-13
Identity = 37/108 (34.26%), Postives = 56/108 (51.85%), Query Frame = 3 
Query:   60 EIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLER---INVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSS--NNWAKGH 368
            EI+ +Q GQCGN +G   W  ++ EH +   GL +   D   ER      ++ E +  K+ PRAI+ D EPS +  +  +  G  F P N    + G+S  N+WA G+
Sbjct:    4 EIITLQAGQCGNHVGKFLWSQLAKEHAIGTDGLSQ-LPDSSTERDDDTKPFFRENSRNKFTPRAIMMDSEPSVIADVENTFRG-FFDPRNTWVASDGASAGNSWANGY 109
[Close]
BLAST of Tubulin beta chain vs. Ensembl Nematostella
Match: EDO35973 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJX5])

HSP 1 Score: 185.652 bits (470), Expect = 1.445e-60
Identity = 78/107 (72.90%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV+ Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Nematostella
Match: EDO39945 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8I3])

HSP 1 Score: 186.808 bits (473), Expect = 9.932e-59
Identity = 79/107 (73.83%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV+ Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRAIL DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Nematostella
Match: EDO35958 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJX9])

HSP 1 Score: 183.341 bits (464), Expect = 1.727e-57
Identity = 77/107 (71.96%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV +Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPR++L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVSLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRSVLIDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Nematostella
Match: EDO42890 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S027])

HSP 1 Score: 173.326 bits (438), Expect = 1.357e-53
Identity = 75/107 (70.09%), Postives = 90/107 (84.11%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFW    +EHG+DP G Y G+SDLQLERINVYY EATGGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGAKFW----NEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 103
[Close]
BLAST of Tubulin beta chain vs. Ensembl Nematostella
Match: EDO49518 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RGG3])

HSP 1 Score: 142.895 bits (359), Expect = 6.093e-42
Identity = 61/109 (55.96%), Postives = 82/109 (75.23%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDL--QLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREI+ +QVGQCGNQ+GT+FW  +++EHG+DP G      D   + +RI+VY+ E  GG+YVPR+IL DLEP TM+ +RG P G +FRPDNF+    G++NNWAKGHY+
Sbjct:    1 MREIINIQVGQCGNQIGTEFWRDIAEEHGIDPTGAKSLIEDTHGRFDRIDVYFHEGNGGRYVPRSILVDLEPGTMDAVRGGPLGNMFRPDNFVNSQSGAANNWAKGHYS 109
[Close]
BLAST of Tubulin beta chain vs. Ensembl Medaka
Match: tubb2 (tubulin beta-2B chain [Source:NCBI gene;Acc:101162245])

HSP 1 Score: 185.267 bits (469), Expect = 1.173e-57
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y+G+SDLQLERINVYY EA+G KYVPRAIL DLEP TM+++R  P+GQLFRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYQGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Medaka
Match: tubb5 (tubulin beta chain [Source:NCBI gene;Acc:101157969])

HSP 1 Score: 184.496 bits (467), Expect = 2.199e-57
Identity = 77/107 (71.96%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQL+RI+VYY EATGGKYVPRAIL DLEP TM+++R  P+GQ+FRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Medaka
Match: ENSORLT00000045809.1 (tubulin beta-6 chain [Source:NCBI gene;Acc:101166121])

HSP 1 Score: 173.711 bits (439), Expect = 4.619e-53
Identity = 76/107 (71.03%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV+VQ+GQCGNQ+G+KFWE++S+EHG++  G+Y G+S LQLERINVY++EA GGKYVPRA+L DLEP TM++IRGS  G LFRPDNFI G  G+ NNWAKGHYT
Sbjct:    1 MREIVHVQIGQCGNQIGSKFWEVISEEHGINATGIYEGDSTLQLERINVYFSEAYGGKYVPRALLVDLEPGTMDSIRGSRIGALFRPDNFIHGNSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Ensembl Medaka
Match: ENSORLT00000047058.1 (pep primary_assembly:ASM223467v1:22:19910744:19912587:1 gene:ENSORLG00000022139.1 transcript:ENSORLT00000047058.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 161.77 bits (408), Expect = 2.498e-52
Identity = 67/93 (72.04%), Postives = 84/93 (90.32%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWG 332
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G YRG+S+LQLERINVYY EA+GGKYVPRA+L DLEP TM+++R  P+GQ+FRPDNF++G
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYRGDSELQLERINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFG 93
[Close]
BLAST of Tubulin beta chain vs. Ensembl Medaka
Match: tubb2 (tubulin beta-2B chain [Source:NCBI gene;Acc:101162245])

HSP 1 Score: 159.073 bits (401), Expect = 1.332e-51
Identity = 67/93 (72.04%), Postives = 82/93 (88.17%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWG 332
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y+G+SDLQLERINVYY EA+G KYVPRAIL DLEP TM+++R  P+GQLFRPDNF++ 
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYQGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFGQLFRPDNFVFA 93
[Close]
BLAST of Tubulin beta chain vs. Planmine SMEST
Match: SMESG000000234.1 (SMESG000000234.1)

HSP 1 Score: 192.586 bits (488), Expect = 6.084e-61
Identity = 90/94 (95.74%), Postives = 91/94 (96.81%), Query Frame = 3 
Query:   93 NQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            N +  KFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT
Sbjct:   22 NDIYYKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 115
[Close]
BLAST of Tubulin beta chain vs. Planmine SMEST
Match: SMESG000000199.1 (SMESG000000199.1)

HSP 1 Score: 192.2 bits (487), Expect = 1.316e-60
Identity = 90/94 (95.74%), Postives = 91/94 (96.81%), Query Frame = 3 
Query:   93 NQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            N +  KFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT
Sbjct:   22 NDIYYKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 115
[Close]
BLAST of Tubulin beta chain vs. Planmine SMEST
Match: SMESG000050810.1 (SMESG000050810.1)

HSP 1 Score: 188.734 bits (478), Expect = 2.901e-59
Identity = 80/107 (74.77%), Postives = 95/107 (88.79%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G+KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRA+L DLEP TM+++R  P+GQLFRPDNFI+G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Planmine SMEST
Match: SMESG000074579.1 (SMESG000074579.1)

HSP 1 Score: 188.348 bits (477), Expect = 4.318e-59
Identity = 80/107 (74.77%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRAIL DLEP TM+++R  P+GQLFRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYT 107
[Close]
BLAST of Tubulin beta chain vs. Planmine SMEST
Match: SMESG000074423.1 (SMESG000074423.1)

HSP 1 Score: 188.348 bits (477), Expect = 4.318e-59
Identity = 80/107 (74.77%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:   54 MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNNWAKGHYT 374
            MREIV++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGKYVPRAIL DLEP TM+++R  P+GQLFRPDNF++G  G+ NNWAKGHYT
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYT 107
The following BLAST results are available for this feature:
BLAST of Tubulin beta chain vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
TUBB4A2.760e-6071.96tubulin beta 4A class IVa [Source:HGNC Symbol;Acc:... [more]
TUBB4A9.207e-6071.96tubulin beta 4A class IVa [Source:HGNC Symbol;Acc:... [more]
TUBB4A8.038e-5971.70tubulin beta 4A class IVa [Source:HGNC Symbol;Acc:... [more]
TUBB4B6.180e-5872.90tubulin beta 4B class IVb [Source:HGNC Symbol;Acc:... [more]
TUBB2B1.880e-5772.90tubulin beta 2B class IIb [Source:HGNC Symbol;Acc:... [more]
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BLAST of Tubulin beta chain vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ben-12.234e-5873.83Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:Q... [more]
tbb-43.982e-5872.90Tubulin beta-4 chain [Source:UniProtKB/Swiss-Prot... [more]
tbb-11.234e-5671.03Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:O... [more]
tbb-11.234e-5671.03Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:O... [more]
tbb-23.058e-5670.09Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot... [more]
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BLAST of Tubulin beta chain vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
betaTub56D5.434e-5771.96gene:FBgn0284243 transcript:FBtr0086536[more]
betaTub97EF2.755e-5571.96gene:FBgn0003890 transcript:FBtr0334906[more]
betaTub97EF3.065e-5571.96gene:FBgn0003890 transcript:FBtr0300611[more]
betaTub85D5.612e-5470.09gene:FBgn0003889 transcript:FBtr0082046[more]
betaTub60D1.057e-5369.64gene:FBgn0003888 transcript:FBtr0343443[more]
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BLAST of Tubulin beta chain vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
zgc:554618.709e-6072.90zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879][more]
zgc:554618.709e-6072.90zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879][more]
zgc:554614.710e-5872.90zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879][more]
zgc:554614.716e-5872.90zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879][more]
zgc:554614.716e-5872.90zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879][more]
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BLAST of Tubulin beta chain vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
reps25.542e-5872.90RALBP1 associated Eps domain containing 2 [Source:... [more]
ubxn111.615e-5771.96UBX domain protein 11 [Source:Xenbase;Acc:XB-GENE-... [more]
tubb3.307e-5771.96tubulin beta class I [Source:NCBI gene;Acc:448742][more]
znf3304.369e-5771.96zinc finger protein 330 [Source:Xenbase;Acc:XB-GEN... [more]
tubb33.109e-5370.09tubulin beta 3 class III [Source:NCBI gene;Acc:395... [more]
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BLAST of Tubulin beta chain vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Tubb4b4.243e-5872.90tubulin, beta 4B class IVB [Source:MGI Symbol;Acc:... [more]
Tubb2b1.291e-5772.90tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:... [more]
Tubb4a2.133e-5771.96tubulin, beta 4A class IVA [Source:MGI Symbol;Acc:... [more]
Tubb52.505e-5771.96tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI... [more]
Tubb2a5.241e-5771.96tubulin, beta 2A class IIA [Source:MGI Symbol;Acc:... [more]
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BLAST of Tubulin beta chain vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P86221|TBB4B_MESAU7.605e-5972.90Tubulin beta-4B chain (Fragments) OS=Mesocricetus ... [more]
sp|P07436|TBB1_PHYPO9.502e-5873.83Tubulin beta-1 chain OS=Physarum polycephalum OX=5... [more]
sp|P34108|TBB_NAEPR1.635e-5773.83Tubulin beta chain OS=Naegleria pringsheimi OX=234... [more]
sp|O17449|TBB1_MANSE1.797e-5773.83Tubulin beta-1 chain OS=Manduca sexta OX=7130 PE=2... [more]
sp|Q9ZSW1|TBB1_CYAPA1.875e-5775.70Tubulin beta-1 chain OS=Cyanophora paradoxa OX=276... [more]
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BLAST of Tubulin beta chain vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A183L5E44.474e-5975.70Tubulin beta chain OS=Schistosoma curassoni OX=618... [more]
A0A183NMA74.710e-5975.70Tubulin beta chain OS=Schistosoma mattheei OX=3124... [more]
A0A183A7269.793e-5974.77Tubulin domain-containing protein OS=Echinostoma c... [more]
W6UQH51.174e-5874.77Tubulin beta chain OS=Echinococcus granulosus OX=6... [more]
A0A1D2MQX83.466e-5872.90Tubulin beta-4B chain (S) OS=Orchesella cincta OX=... [more]
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BLAST of Tubulin beta chain vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
zgc:554614.083e-5872.90tubulin beta-4B chain [Source:NCBI gene;Acc:103024... [more]
TUBB2A2.380e-5669.64tubulin beta-2A chain [Source:NCBI gene;Acc:103041... [more]
ENSAMXT00000040211.11.065e-5172.04pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
ENSAMXT00000034689.11.139e-5165.05pep primary_assembly:Astyanax_mexicanus-2.0:24:990... [more]
ENSAMXT00000036235.13.593e-5167.33pep primary_assembly:Astyanax_mexicanus-2.0:6:3453... [more]
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BLAST of Tubulin beta chain vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSPMAT00000009623.12.021e-5466.67pep scaffold:Pmarinus_7.0:GL485233:4234:10583:1 ge... [more]
tubb26.064e-4771.91tubulin, beta 2A class IIa [Source:ZFIN;Acc:ZDB-GE... [more]
ENSPMAT00000005307.11.190e-2639.81pep scaffold:Pmarinus_7.0:GL485425:14485:17012:-1 ... [more]
TUBA3C5.670e-2640.54tubulin alpha 3c [Source:HGNC Symbol;Acc:HGNC:1240... [more]
tubg12.693e-2540.57tubulin, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-... [more]
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BLAST of Tubulin beta chain vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 4
Match NameE-valueIdentityDescription
TUB28.454e-4357.01Beta-tubulin; associates with alpha-tubulin (Tub1p... [more]
TUB11.153e-2543.64Alpha-tubulin; associates with beta-tubulin (Tub2p... [more]
TUB31.250e-2240.91Alpha-tubulin; associates with beta-tubulin (Tub2p... [more]
TUB41.798e-1334.26Gamma-tubulin; involved in nucleating microtubules... [more]
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BLAST of Tubulin beta chain vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO359731.445e-6072.90Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO399459.932e-5973.83Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO359581.727e-5771.96Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO428901.357e-5370.09Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO495186.093e-4255.96Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Tubulin beta chain vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
tubb21.173e-5772.90tubulin beta-2B chain [Source:NCBI gene;Acc:101162... [more]
tubb52.199e-5771.96tubulin beta chain [Source:NCBI gene;Acc:101157969... [more]
ENSORLT00000045809.14.619e-5371.03tubulin beta-6 chain [Source:NCBI gene;Acc:1011661... [more]
ENSORLT00000047058.12.498e-5272.04pep primary_assembly:ASM223467v1:22:19910744:19912... [more]
tubb21.332e-5172.04tubulin beta-2B chain [Source:NCBI gene;Acc:101162... [more]
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BLAST of Tubulin beta chain vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000000234.16.084e-6195.74SMESG000000234.1[more]
SMESG000000199.11.316e-6095.74SMESG000000199.1[more]
SMESG000050810.12.901e-5974.77SMESG000050810.1[more]
SMESG000074579.14.318e-5974.77SMESG000074579.1[more]
SMESG000074423.14.318e-5974.77SMESG000074423.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30034805 ID=SMED30034805|Name=Tubulin beta chain|organism=Schmidtea mediterranea sexual|type=transcript|length=374bp
ATCTATTTAATATAATAAATTGATTTTCGCATAGAAACGAATATCAACCA
GCCATGAGAGAAATCGTCTATGTCCAAGTAGGCCAATGCGGCAACCAAAT
GGGAACGAAGTTCTGGGAAATCATGTCGGACGAGCATGGTCTGGACCCCA
GAGGACTATATCGTGGTGAATCGGATCTACAATTGGAAAGAATAAATGTT
TATTATACAGAAGCAACAGGAGGAAAATATGTCCCAAGAGCTATATTGAC
TGATTTAGAGCCATCTACGATGGAAACAATACGCGGGAGTCCATACGGAC
AATTATTTAGGCCTGATAACTTTATTTGGGGGGCAAGAGGATCGTCAAAT
AATTGGGCTAAAGGACATTATACC
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protein sequence of SMED30034805-orf-1

>SMED30034805-orf-1 ID=SMED30034805-orf-1|Name=SMED30034805-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=107bp
MREIVYVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVY
YTEATGGKYVPRAILTDLEPSTMETIRGSPYGQLFRPDNFIWGARGSSNN
WAKGHYT
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000208testis
PLANA:0002030early male germ cell
PLANA:0003304testis primordium
Vocabulary: INTERPRO
TermDefinition
IPR036525Tubulin/FtsZ_GTPase_sf
IPR013838Beta-tubulin_BS
IPR002453Beta_tubulin
IPR000217Tubulin
IPR003008Tubulin_FtsZ_GTPase
Vocabulary: cellular component
TermDefinition
GO:0005874microtubule
GO:0005634nucleus
GO:0005737cytoplasm
GO:0005819spindle
GO:0005856cytoskeleton
Vocabulary: molecular function
TermDefinition
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
GO:0003924GTPase activity
GO:0000166nucleotide binding
Vocabulary: biological process
TermDefinition
GO:0007017microtubule-based process
GO:0007010cytoskeleton organization
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000217TubulinPRINTSPR01161TUBULINcoord: 10..30
score: 61.63
coord: 51..70
score: 64.53
coord: 93..104
score: 55.17
IPR000217TubulinPANTHERPTHR11588TUBULINcoord: 2..107
IPR002453Beta tubulinPRINTSPR01163BETATUBULINcoord: 88..99
score: 49.95
coord: 41..58
score: 76.51
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 3..107
e-value: 1.6E-25
score: 90.4
IPR036525Tubulin/FtsZ, GTPase domain superfamilyGENE3DG3DSA:3.40.50.1440coord: 1..107
e-value: 1.4E-44
score: 154.5
IPR036525Tubulin/FtsZ, GTPase domain superfamilySUPERFAMILYSSF52490Tubulin nucleotide-binding domain-likecoord: 1..107
NoneNo IPR availablePANTHERPTHR11588:SF314TUBULIN BETA-1 CHAIN-RELATEDcoord: 2..107
IPR013838Beta tubulin, autoregulation binding sitePROSITEPS00228TUBULIN_B_AUTOREGcoord: 1..4