TAR DNA-binding protein 43
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30034732 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Match: TARDBP (TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571]) HSP 1 Score: 230.72 bits (587), Expect = 2.505e-70 Identity = 120/257 (46.69%), Postives = 162/257 (63.04%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867 DGT+LLST+T QFP A GL+Y++ + RGVR + P GW Y KDNKRK D+ + A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RF +Y+ QV ++++H ID RWC+ K+P SK Q P + K+ VGR +E +T D LR FF+QYG V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N N Q +GR Sbjct: 23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRS---RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Match: TARDBP (TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571]) HSP 1 Score: 230.72 bits (587), Expect = 2.505e-70 Identity = 120/257 (46.69%), Postives = 162/257 (63.04%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867 DGT+LLST+T QFP A GL+Y++ + RGVR + P GW Y KDNKRK D+ + A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RF +Y+ QV ++++H ID RWC+ K+P SK Q P + K+ VGR +E +T D LR FF+QYG V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N N Q +GR Sbjct: 23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRS---RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Match: AL109811.3 (novel protein) HSP 1 Score: 230.72 bits (587), Expect = 2.505e-70 Identity = 120/257 (46.69%), Postives = 162/257 (63.04%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867 DGT+LLST+T QFP A GL+Y++ + RGVR + P GW Y KDNKRK D+ + A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RF +Y+ QV ++++H ID RWC+ K+P SK Q P + K+ VGR +E +T D LR FF+QYG V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N N Q +GR Sbjct: 23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRS---RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Match: TARDBP (TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571]) HSP 1 Score: 230.72 bits (587), Expect = 2.512e-70 Identity = 120/257 (46.69%), Postives = 162/257 (63.04%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867 DGT+LLST+T QFP A GL+Y++ + RGVR + P GW Y KDNKRK D+ + A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RF +Y+ QV ++++H ID RWC+ K+P SK Q P + K+ VGR +E +T D LR FF+QYG V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N N Q +GR Sbjct: 23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRS---RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Match: TARDBP (TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571]) HSP 1 Score: 230.72 bits (587), Expect = 2.512e-70 Identity = 120/257 (46.69%), Postives = 162/257 (63.04%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867 DGT+LLST+T QFP A GL+Y++ + RGVR + P GW Y KDNKRK D+ + A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RF +Y+ QV ++++H ID RWC+ K+P SK Q P + K+ VGR +E +T D LR FF+QYG V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N N Q +GR Sbjct: 23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRS---RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
BLAST of TAR DNA-binding protein 43 vs. Ensembl Celegans
Match: tdp-1 (Tar DNA-binding protein homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:D0VWM8]) HSP 1 Score: 139.813 bits (351), Expect = 7.488e-36 Identity = 94/302 (31.13%), Postives = 143/302 (47.35%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRF--ASDRFYPPPEGWETYTYSCVLFKDNK--RKSDDEQYTLAKTKKM-----------------------EGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLA-EQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGK-------VESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTY 900 DG +L++TL FP ATGLKYK+ TG R V+ + + P +GWE T+ ++ ++ R T AK +K+ + DLIVL + ++T DE + YF G VV ++KR+ D SKG+ F+R + Q LA QH ID R C+VK+P +S+Q + + ++I VGRL++ V LR F K V ++IP+PFR FAFV+ A+ ++ + + V +S A P+ +NQ+ P YG Y Sbjct: 65 DGVVLMTTLQASFPGATGLKYKNPKTGANRAVQVDPSGLKLIAPADGWENKTFFVIVAPQSERVRALSSADATSAKRRKVGSSDDSDSDDGRDGRSGRKRAVERDSQPVDLIVLGVDFKTTDECFQKYFEDIGTVVFCEIKRKSDG-NSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVKVPDGRSLQ-DKQGRPSISRIFVGRLTDKVDEHQLRKVFGDEAKSYIETAVVTDVFIPKPFRGFAFVTLSSAEAAERIVSKGSLTVNGLSVGLSIAQPREENNQS-----VGPDYGLPAGY 359
BLAST of TAR DNA-binding protein 43 vs. Ensembl Celegans
Match: tdp-1 (Tar DNA-binding protein homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:D0VWM8]) HSP 1 Score: 138.272 bits (347), Expect = 2.175e-35 Identity = 94/302 (31.13%), Postives = 140/302 (46.36%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRF--ASDRFYPPPEGWETYTYSCVLFKDNK--RKSDDEQYTLAKTKKM-----------------------EGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLA-EQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGK-------VESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTY 900 DG +L++TL FP ATGLKYK+ TG R V+ + + P +GWE T+ ++ ++ R T AK +K+ + DLIVL + ++T DE + YF G VV ++KR+ D SKG+ F+R + Q LA QH ID R C+VK+P + Q P ++I VGRL++ V LR F K V ++IP+PFR FAFV+ A+ ++ + + V +S A P+ +NQ+ P YG Y Sbjct: 65 DGVVLMTTLQASFPGATGLKYKNPKTGANRAVQVDPSGLKLIAPADGWENKTFFVIVAPQSERVRALSSADATSAKRRKVGSSDDSDSDDGRDGRSGRKRAVERDSQPVDLIVLGVDFKTTDECFQKYFEDIGTVVFCEIKRKSDG-NSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVKVPDGRDKQGRPSI----SRIFVGRLTDKVDEHQLRKVFGDEAKSYIETAVVTDVFIPKPFRGFAFVTLSSAEAAERIVSKGSLTVNGLSVGLSIAQPREENNQS-----VGPDYGLPAGY 356
BLAST of TAR DNA-binding protein 43 vs. Ensembl Celegans
Match: sqd-1 (Homologous to Drosophila SQD (Squid) protein [Source:UniProtKB/TrEMBL;Acc:Q8MXR6]) HSP 1 Score: 73.1738 bits (178), Expect = 6.396e-14 Identity = 47/169 (27.81%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 271 DNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIP-----RPFRSFAFVSFEDESTA 762 DNK + + +G + + V I ++E L +F+++G+V QVK + +S+G+AF+ F + + LA + + KSV++ P + K+ VG L + LRS F Q+GKV+ I P + R+FAF+ FE+E +A Sbjct: 5 DNKINGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAARE---------QTIKGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESA 164
BLAST of TAR DNA-binding protein 43 vs. Ensembl Celegans
Match: sqd-1 (Homologous to Drosophila SQD (Squid) protein [Source:UniProtKB/TrEMBL;Acc:Q8MXR6]) HSP 1 Score: 73.1738 bits (178), Expect = 6.396e-14 Identity = 47/169 (27.81%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 271 DNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIP-----RPFRSFAFVSFEDESTA 762 DNK + + +G + + V I ++E L +F+++G+V QVK + +S+G+AF+ F + + LA + + KSV++ P + K+ VG L + LRS F Q+GKV+ I P + R+FAF+ FE+E +A Sbjct: 5 DNKINGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAARE---------QTIKGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESA 164
BLAST of TAR DNA-binding protein 43 vs. Ensembl Celegans
Match: sqd-1 (Homologous to Drosophila SQD (Squid) protein [Source:UniProtKB/TrEMBL;Acc:Q8MXR6]) HSP 1 Score: 73.1738 bits (178), Expect = 6.396e-14 Identity = 47/169 (27.81%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 271 DNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIP-----RPFRSFAFVSFEDESTA 762 DNK + + +G + + V I ++E L +F+++G+V QVK + +S+G+AF+ F + + LA + + KSV++ P + K+ VG L + LRS F Q+GKV+ I P + R+FAF+ FE+E +A Sbjct: 5 DNKINGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAARE---------QTIKGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESA 164
BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Match: TBPH (gene:FBgn0025790 transcript:FBtr0089626) HSP 1 Score: 248.825 bits (634), Expect = 4.717e-77 Identity = 146/331 (44.11%), Postives = 206/331 (62.24%), Query Frame = 1 Query: 37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPP--EGWETYTYSCVLFKDNKRKSDDE-QYTLAKTKKMEGK-KCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFS---------DGRGGMNRNRSCQNKLMPNSNQMPHE 990 M +V V EEE + IELP EEDGTLLLSTL QFP + GLKY++ DT RGVR R +PP GW Y Y CV K+NKRKSDD + + AKTK++E + +CTDLIVL +PW+T +E+L+ YF +G+V+M Q+K++ + +SKG+ F+RF YDAQ+ L +H ID RWCEVK+P SK + ++V K+ VGR +E + +D LR +F+++G+V ++IPRPFR+F+FV+F D AQSL G E I V +S A+PK+ N+N Y N++ + S GR G +R R Q ++ S + P + Sbjct: 1 MDFVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGM-----GHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCG-EDHIIKGVSVHVSNAAPKAEQNRNQQ--VQSYNYNSANSFGMHSYHPQGNHMNPGRNGHHRGR--QFSILDGSERGPQQ 321
BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Match: TBPH (gene:FBgn0025790 transcript:FBtr0089625) HSP 1 Score: 253.832 bits (647), Expect = 1.458e-76 Identity = 135/276 (48.91%), Postives = 187/276 (67.75%), Query Frame = 1 Query: 37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPP--EGWETYTYSCVLFKDNKRKSDDE-QYTLAKTKKMEGK-KCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQN 852 M +V V EEE + IELP EEDGTLLLSTL QFP + GLKY++ DT RGVR R +PP GW Y Y CV K+NKRKSDD + + AKTK++E + +CTDLIVL +PW+T +E+L+ YF +G+V+M Q+K++ + +SKG+ F+RF YDAQ+ L +H ID RWCEVK+P SK + ++V K+ VGR +E + +D LR +F+++G+V ++IPRPFR+F+FV+F D AQSL G E I V +S A+PK+ N+N Sbjct: 1 MDFVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGM-----GHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCG-EDHIIKGVSVHVSNAAPKAEQNRN 270
BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Match: TBPH (gene:FBgn0025790 transcript:FBtr0089624) HSP 1 Score: 253.832 bits (647), Expect = 1.458e-76 Identity = 135/276 (48.91%), Postives = 187/276 (67.75%), Query Frame = 1 Query: 37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPP--EGWETYTYSCVLFKDNKRKSDDE-QYTLAKTKKMEGK-KCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQN 852 M +V V EEE + IELP EEDGTLLLSTL QFP + GLKY++ DT RGVR R +PP GW Y Y CV K+NKRKSDD + + AKTK++E + +CTDLIVL +PW+T +E+L+ YF +G+V+M Q+K++ + +SKG+ F+RF YDAQ+ L +H ID RWCEVK+P SK + ++V K+ VGR +E + +D LR +F+++G+V ++IPRPFR+F+FV+F D AQSL G E I V +S A+PK+ N+N Sbjct: 1 MDFVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGM-----GHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCG-EDHIIKGVSVHVSNAAPKAEQNRN 270
BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Match: TBPH (gene:FBgn0025790 transcript:FBtr0089627) HSP 1 Score: 253.832 bits (647), Expect = 1.458e-76 Identity = 135/276 (48.91%), Postives = 187/276 (67.75%), Query Frame = 1 Query: 37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPP--EGWETYTYSCVLFKDNKRKSDDE-QYTLAKTKKMEGK-KCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQN 852 M +V V EEE + IELP EEDGTLLLSTL QFP + GLKY++ DT RGVR R +PP GW Y Y CV K+NKRKSDD + + AKTK++E + +CTDLIVL +PW+T +E+L+ YF +G+V+M Q+K++ + +SKG+ F+RF YDAQ+ L +H ID RWCEVK+P SK + ++V K+ VGR +E + +D LR +F+++G+V ++IPRPFR+F+FV+F D AQSL G E I V +S A+PK+ N+N Sbjct: 1 MDFVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGM-----GHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCG-EDHIIKGVSVHVSNAAPKAEQNRN 270
BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Match: TBPH (gene:FBgn0025790 transcript:FBtr0301643) HSP 1 Score: 253.832 bits (647), Expect = 1.458e-76 Identity = 135/276 (48.91%), Postives = 187/276 (67.75%), Query Frame = 1 Query: 37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPP--EGWETYTYSCVLFKDNKRKSDDE-QYTLAKTKKMEGK-KCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQN 852 M +V V EEE + IELP EEDGTLLLSTL QFP + GLKY++ DT RGVR R +PP GW Y Y CV K+NKRKSDD + + AKTK++E + +CTDLIVL +PW+T +E+L+ YF +G+V+M Q+K++ + +SKG+ F+RF YDAQ+ L +H ID RWCEVK+P SK + ++V K+ VGR +E + +D LR +F+++G+V ++IPRPFR+F+FV+F D AQSL G E I V +S A+PK+ N+N Sbjct: 1 MDFVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGM-----GHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCG-EDHIIKGVSVHVSNAAPKAEQNRN 270
BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
Match: tardbpl (TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1]) HSP 1 Score: 231.491 bits (589), Expect = 1.948e-69 Identity = 116/256 (45.31%), Postives = 159/256 (62.11%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSV--QMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMN 861 DGT+LLST+ QFP A GL+Y+S + RGVR + P W Y KDNKRK D+ A K +K +DLIVL +PW+T ++ LK YF FG+V+MVQVKR+ + SKG+ F+RF DY+ Q+ ++++H ID RWC+ K+P SK Q P+ K+ VGR +E +TAD LR FF QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N+++ M+ Sbjct: 24 DGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAPEADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGTS-VHISNAEPKHNNSRQMMD 278
BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
Match: tardbpl (TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1]) HSP 1 Score: 228.024 bits (580), Expect = 2.085e-69 Identity = 119/262 (45.42%), Postives = 160/262 (61.07%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSV--QMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSN---HNQNNMNGRA 870 DGT+LLST+ QFP A GL+Y+S + RGVR + P W Y KDNKRK D+ A K +K +DLIVL +PW+T ++ LK YF FG+V+MVQVKR+ + SKG+ F+RF DY+ Q+ ++++H ID RWC+ K+P SK Q P+ K+ VGR +E +TAD LR FF QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N H +N GR+ Sbjct: 24 DGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAPEADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGTS-VHISNAEPKHNNIHHLFSNFPGRS 284
BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
Match: tardbpl (TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1]) HSP 1 Score: 228.024 bits (580), Expect = 2.085e-69 Identity = 119/262 (45.42%), Postives = 160/262 (61.07%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSV--QMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSN---HNQNNMNGRA 870 DGT+LLST+ QFP A GL+Y+S + RGVR + P W Y KDNKRK D+ A K +K +DLIVL +PW+T ++ LK YF FG+V+MVQVKR+ + SKG+ F+RF DY+ Q+ ++++H ID RWC+ K+P SK Q P+ K+ VGR +E +TAD LR FF QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N H +N GR+ Sbjct: 24 DGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAPEADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGTS-VHISNAEPKHNNIHHLFSNFPGRS 284
BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
Match: tardbpl (TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1]) HSP 1 Score: 227.639 bits (579), Expect = 2.457e-69 Identity = 118/260 (45.38%), Postives = 160/260 (61.54%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSN---HNQNNMNGRA 870 DGT+LLST+ QFP A GL+Y+S + RGVR + P W Y KDNKRK D+ A K +K +DLIVL +PW+T ++ LK YF FG+V+MVQVKR+ + SKG+ F+RF DY+ Q+ ++++H ID RWC+ K+P SK+ P+ K+ VGR +E +TAD LR FF QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N H +N GR+ Sbjct: 24 DGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAPEADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKA---GPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGTS-VHISNAEPKHNNIHHLFSNFPGRS 279
BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
Match: tardbpl (TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1]) HSP 1 Score: 227.639 bits (579), Expect = 2.457e-69 Identity = 118/260 (45.38%), Postives = 160/260 (61.54%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSN---HNQNNMNGRA 870 DGT+LLST+ QFP A GL+Y+S + RGVR + P W Y KDNKRK D+ A K +K +DLIVL +PW+T ++ LK YF FG+V+MVQVKR+ + SKG+ F+RF DY+ Q+ ++++H ID RWC+ K+P SK+ P+ K+ VGR +E +TAD LR FF QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N H +N GR+ Sbjct: 24 DGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAPEADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKA---GPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGTS-VHISNAEPKHNNIHHLFSNFPGRS 279
BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Match: jarid2 (jumonji and AT-rich interaction domain containing 2 [Source:Xenbase;Acc:XB-GENE-982166]) HSP 1 Score: 240.35 bits (612), Expect = 1.683e-72 Identity = 129/283 (45.58%), Postives = 181/283 (63.96%), Query Frame = 1 Query: 31 IKMKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPG 879 ++M+Y+ V E+E E +E+P E+DGT+LLST+T QFP A GL+Y++ RGVR + P GW Y KDNKRK D+ + A K K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RFADY+ QV ++++H ID RWC+ K+P SKS P+ K+ VGR +E ++A+ LR FF+QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V +S A PK N+N+ G PG Sbjct: 10 MEMEYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILHAPENGWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAVTKTSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCKLPNSKS----PDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIK-GVSVHVSTAEPKHNNNRQLERGGRFPG 287
BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Match: jarid2 (jumonji and AT-rich interaction domain containing 2 [Source:Xenbase;Acc:XB-GENE-982166]) HSP 1 Score: 166.777 bits (421), Expect = 9.345e-46 Identity = 86/185 (46.49%), Postives = 120/185 (64.86%), Query Frame = 1 Query: 31 IKMKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQ 585 ++M+Y+ V E+E E +E+P E+DGT+LLST+T QFP A GL+Y++ RGVR + P GW Y KDNKRK D+ + A K K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RFADY+ QV ++++H ID RWC+ K+P SK Q Sbjct: 1 MEMEYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILHAPENGWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAVTKTSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCKLPNSKVAQ 185
BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Match: kcnj4 (potassium inwardly rectifying channel subfamily J member 4 [Source:Xenbase;Acc:XB-GENE-493748]) HSP 1 Score: 84.7297 bits (208), Expect = 8.422e-18 Identity = 57/198 (28.79%), Postives = 95/198 (47.98%), Query Frame = 1 Query: 349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAE-QHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRG 924 + + + W+T ++L+ YF+KFG++ V R+P T +S+G+ F+ FAD + LA+ H +D++ + K+ + + Q P+ KI VG LS + ++ +F Q+GKVE + R F FV+FE E + + ++ +V A PK GRA+ G T D F G G Sbjct: 1 MFIGGLSWQTSPDSLRDYFNKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQPHHELDSKTIDPKVAFPRRAQ--PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEIEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR---GLPYTMDAFMLGMG 193
BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Match: kcnj4 (potassium inwardly rectifying channel subfamily J member 4 [Source:Xenbase;Acc:XB-GENE-493748]) HSP 1 Score: 85.1149 bits (209), Expect = 2.290e-17 Identity = 57/198 (28.79%), Postives = 95/198 (47.98%), Query Frame = 1 Query: 349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAE-QHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRG 924 + + + W+T ++L+ YF+KFG++ V R+P T +S+G+ F+ FAD + LA+ H +D++ + K+ + + Q P+ KI VG LS + ++ +F Q+GKVE + R F FV+FE E + + ++ +V A PK GRA+ G T D F G G Sbjct: 23 MFIGGLSWQTSPDSLRDYFNKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQPHHELDSKTIDPKVAFPRRAQ--PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEIEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR---GLPYTMDAFMLGMG 215
BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Match: kcnj4 (potassium inwardly rectifying channel subfamily J member 4 [Source:Xenbase;Acc:XB-GENE-493748]) HSP 1 Score: 85.1149 bits (209), Expect = 2.811e-17 Identity = 57/198 (28.79%), Postives = 95/198 (47.98%), Query Frame = 1 Query: 349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAE-QHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRG 924 + + + W+T ++L+ YF+KFG++ V R+P T +S+G+ F+ FAD + LA+ H +D++ + K+ + + Q P+ KI VG LS + ++ +F Q+GKVE + R F FV+FE E + + ++ +V A PK GRA+ G T D F G G Sbjct: 23 MFIGGLSWQTSPDSLRDYFNKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQPHHELDSKTIDPKVAFPRRAQ--PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEIEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR---GLPYTMDAFMLGMG 215
BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Match: Tardbp (TAR DNA binding protein [Source:MGI Symbol;Acc:MGI:2387629]) HSP 1 Score: 226.098 bits (575), Expect = 7.886e-69 Identity = 118/257 (45.91%), Postives = 163/257 (63.42%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867 DGT+LLST+T QFP A GL+Y++ + RGVR + P GW Y KDNKRK D+ + A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RF +Y+ QV ++++H ID RWC+ K+P SK +P+ K+ VGR +E +TA+ L+ FF QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N N Q +GR Sbjct: 23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQ---SPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Match: Tardbp (TAR DNA binding protein [Source:MGI Symbol;Acc:MGI:2387629]) HSP 1 Score: 226.098 bits (575), Expect = 9.411e-69 Identity = 118/257 (45.91%), Postives = 163/257 (63.42%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867 DGT+LLST+T QFP A GL+Y++ + RGVR + P GW Y KDNKRK D+ + A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RF +Y+ QV ++++H ID RWC+ K+P SK +P+ K+ VGR +E +TA+ L+ FF QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N N Q +GR Sbjct: 23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQ---SPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Match: Tardbp (TAR DNA binding protein [Source:MGI Symbol;Acc:MGI:2387629]) HSP 1 Score: 226.098 bits (575), Expect = 9.411e-69 Identity = 118/257 (45.91%), Postives = 163/257 (63.42%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867 DGT+LLST+T QFP A GL+Y++ + RGVR + P GW Y KDNKRK D+ + A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RF +Y+ QV ++++H ID RWC+ K+P SK +P+ K+ VGR +E +TA+ L+ FF QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N N Q +GR Sbjct: 23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQ---SPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Match: Tardbp (TAR DNA binding protein [Source:MGI Symbol;Acc:MGI:2387629]) HSP 1 Score: 226.098 bits (575), Expect = 9.411e-69 Identity = 118/257 (45.91%), Postives = 163/257 (63.42%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867 DGT+LLST+T QFP A GL+Y++ + RGVR + P GW Y KDNKRK D+ + A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RF +Y+ QV ++++H ID RWC+ K+P SK +P+ K+ VGR +E +TA+ L+ FF QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N N Q +GR Sbjct: 23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQ---SPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Match: Tardbp (TAR DNA binding protein [Source:MGI Symbol;Acc:MGI:2387629]) HSP 1 Score: 226.098 bits (575), Expect = 9.411e-69 Identity = 118/257 (45.91%), Postives = 163/257 (63.42%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867 DGT+LLST+T QFP A GL+Y++ + RGVR + P GW Y KDNKRK D+ + A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RF +Y+ QV ++++H ID RWC+ K+P SK +P+ K+ VGR +E +TA+ L+ FF QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N N Q +GR Sbjct: 23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQ---SPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Match: sp|Q28F51|TADBP_XENTR (TAR DNA-binding protein 43 OS=Xenopus tropicalis OX=8364 GN=tardbp PE=2 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 9.338e-72 Identity = 129/283 (45.58%), Postives = 181/283 (63.96%), Query Frame = 1 Query: 31 IKMKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPG 879 ++M+Y+ V E+E E +E+P E+DGT+LLST+T QFP A GL+Y++ RGVR + P GW Y KDNKRK D+ + A K K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RFADY+ QV ++++H ID RWC+ K+P SKS P+ K+ VGR +E ++A+ LR FF+QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V +S A PK N+N+ G PG Sbjct: 1 MEMEYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILHAPENGWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAVTKTSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCKLPNSKS----PDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIK-GVSVHVSTAEPKHNNNRQLERGGRFPG 278
BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Match: sp|Q13148|TADBP_HUMAN (TAR DNA-binding protein 43 OS=Homo sapiens OX=9606 GN=TARDBP PE=1 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 2.148e-69 Identity = 117/250 (46.80%), Postives = 159/250 (63.60%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQ 849 DGT+LLST+T QFP A GL+Y++ + RGVR + P GW Y KDNKRK D+ + A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RF +Y+ QV ++++H ID RWC+ K+P SK Q P + K+ VGR +E +T D LR FF+QYG V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N N+ Sbjct: 23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRSR---KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIK-GISVHISNAEPKHNSNR 268
BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Match: sp|Q5R5W2|TADBP_PONAB (TAR DNA-binding protein 43 OS=Pongo abelii OX=9601 GN=TARDBP PE=2 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 2.217e-69 Identity = 117/250 (46.80%), Postives = 159/250 (63.60%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQ 849 DGT+LLST+T QFP A GL+Y++ + RGVR + P GW Y KDNKRK D+ + A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RF +Y+ QV ++++H ID RWC+ K+P SK Q P + K+ VGR +E +T D LR FF+QYG V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N N+ Sbjct: 23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRSR---KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIK-GISVHISNAEPKHNSNR 268
BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Match: sp|Q5ZLN5|TADBP_CHICK (TAR DNA-binding protein 43 OS=Gallus gallus OX=9031 GN=TARDBP PE=2 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 5.167e-68 Identity = 116/250 (46.40%), Postives = 159/250 (63.60%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQ 849 DGT+LLST+T QFP A GL+Y++ + GVR + P GW Y KDNKRK D+ + A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RF DY+ QV ++++H ID RWC+ K+P SK +P+ K+ VGR +E +TAD L+ FF QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N N+ Sbjct: 23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMWGVRLVEGILHAPEAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPNSKQ---SPDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIK-GISVHISNAEPKHNSNR 268
BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Match: sp|Q921F2|TADBP_MOUSE (TAR DNA-binding protein 43 OS=Mus musculus OX=10090 GN=Tardbp PE=1 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 3.071e-67 Identity = 115/250 (46.00%), Postives = 160/250 (64.00%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQ 849 DGT+LLST+T QFP A GL+Y++ + RGVR + P GW Y KDNKRK D+ + A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++ T SKG+ F+RF +Y+ QV ++++H ID RWC+ K+P SK +P+ K+ VGR +E +TA+ L+ FF QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N N+ Sbjct: 23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSK---QSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIK-GISVHISNAEPKHNSNR 268
BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Match: A0A183SYD1 (TAR DNA-binding protein 43 OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS9229 PE=4 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 2.141e-93 Identity = 165/367 (44.96%), Postives = 230/367 (62.67%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQY--TLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK-----SNHNQNNMN----GRAQPGYGHWNTYD-----VFSDGRGGMNRNRSCQNKLMPNSNQ-----MPHEWSNYLXXXXXXXXXXXXXXXFTTP----DMSQNTNAMAALNIINNPSVV 1125 D TLLLSTLT QFP+ATGLKY+ + TG RG+R ++DR +PPP+GW+ Y V+ ++ DDE+ LAK+K++EGKKCTDLI+LN+PWR D+ ALK YFSKFG+V MVQVKR+P+T +S+GY FIRF DY AQ MCLAE+H ID+RWC+V+IP SK + + EV K+H+G+L+E +TADVLR F+++G++ +++PRPFRSFAF++FED A SLLG++ +N +T+ +A PK + NQN M+ G P WN + G + R+ N + P NQ S Y + + QR +P ++ A+A LNI++NPSVV Sbjct: 24 DNTLLLSTLTAQFPRATGLKYQFECTGCIRGIRLSNDRLFPPPDGWQNRVYRIVVANTKRKGDDDEEQGSNLAKSKRLEGKKCTDLIILNLPWRIDEPALKNYFSKFGEVAMVQVKRDPNTNQSRGYGFIRFRDYAAQAMCLAERHFIDSRWCDVRIPVSK---IEGDRQEVNRKLHIGQLTEDITADVLREHFSRFGEITDVFVPRPFRSFAFITFEDADVAASLLGQDQVVN-GVTLTVGSAVPKMPAFPRHSNQNMMHNMYQGNMGPQQLPWNPWQPQFGGYGYGDGGHVAPVRTRYNAMAPGVNQAAMSTAAALASQYTRAHQNQNTCFARQRSSMSPVPTYPGGGDSAALATLNILSNPSVV 386
BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Match: A0A0X3NQN6 (TAR DNA-binding protein 43 OS=Schistocephalus solidus OX=70667 GN=TADBP PE=4 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 2.178e-93 Identity = 165/367 (44.96%), Postives = 230/367 (62.67%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQY--TLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK-----SNHNQNNMN----GRAQPGYGHWNTYD-----VFSDGRGGMNRNRSCQNKLMPNSNQ-----MPHEWSNYLXXXXXXXXXXXXXXXFTTP----DMSQNTNAMAALNIINNPSVV 1125 D TLLLSTLT QFP+ATGLKY+ + TG RG+R ++DR +PPP+GW+ Y V+ ++ DDE+ LAK+K++EGKKCTDLI+LN+PWR D+ ALK YFSKFG+V MVQVKR+P+T +S+GY FIRF DY AQ MCLAE+H ID+RWC+V+IP SK + + EV K+H+G+L+E +TADVLR F+++G++ +++PRPFRSFAF++FED A SLLG++ +N +T+ +A PK + NQN M+ G P WN + G + R+ N + P NQ S Y + + QR +P ++ A+A LNI++NPSVV Sbjct: 27 DNTLLLSTLTAQFPRATGLKYQFECTGCIRGIRLSNDRLFPPPDGWQNRVYRIVVANTKRKGDDDEEQGSNLAKSKRLEGKKCTDLIILNLPWRIDEPALKNYFSKFGEVAMVQVKRDPNTNQSRGYGFIRFRDYAAQAMCLAERHFIDSRWCDVRIPVSK---IEGDRQEVNRKLHIGQLTEDITADVLREHFSRFGEITDVFVPRPFRSFAFITFEDADVAASLLGQDQVVN-GVTLTVGSAVPKMPAFPRHSNQNMMHNMYQGNMGPQQLPWNPWQPQFGGYGYGDGGHVAPVRTRYNAMAPGVNQAAMSTAAALASQYTRAHQNQNTCFARQRSSMSPVPTYPGGGDSAALATLNILSNPSVV 389
BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Match: A0A068Y5Q1 (Tar DNA binding protein OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000472500 PE=4 SV=1) HSP 1 Score: 296.975 bits (759), Expect = 6.519e-91 Identity = 136/245 (55.51%), Postives = 183/245 (74.69%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK 834 D TLLLSTL QFP+ATGLKY S ++G RGVR++ R YPPP+GW+ Y V+ ++ D+E AKTK+++GK+CTDLIVLN+PWR ++ ALK YFS+FGDVVM QVKR+P+T +S+GY FIRF DYDAQVMCLAE+H ID+RWC+V+IP SK+ + EV K+H+G+L+E +TAD+LR F+Q+G + +++PRPFRSFAF++FED A SLLG + IN +T+ +A PK Sbjct: 26 DKTLLLSTLAAQFPRATGLKYAS-ESGCMRGVRYSDGRIYPPPDGWQNRVYKIVVSYAKRKVDDEEAGNFAKTKRLDGKRCTDLIVLNLPWRVEETALKNYFSRFGDVVMAQVKRDPNTNQSRGYGFIRFRDYDAQVMCLAERHFIDSRWCDVRIPISKT---EGDRQEVNRKLHIGQLTEDITADMLRDHFSQFGHITDVFVPRPFRSFAFITFEDPGVAASLLGEDQVINGQ-TLTVGSAVPK 265
BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Match: A0A068WI34 (Tar DNA binding protein OS=Echinococcus granulosus OX=6210 GN=EgrG_000472500 PE=4 SV=1) HSP 1 Score: 296.975 bits (759), Expect = 6.519e-91 Identity = 136/245 (55.51%), Postives = 183/245 (74.69%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK 834 D TLLLSTL QFP+ATGLKY S ++G RGVR++ R YPPP+GW+ Y V+ ++ D+E AKTK+++GK+CTDLIVLN+PWR ++ ALK YFS+FGDVVM QVKR+P+T +S+GY FIRF DYDAQVMCLAE+H ID+RWC+V+IP SK+ + EV K+H+G+L+E +TAD+LR F+Q+G + +++PRPFRSFAF++FED A SLLG + IN +T+ +A PK Sbjct: 26 DKTLLLSTLAAQFPRATGLKYAS-ESGCMRGVRYSDGRIYPPPDGWQNRVYKIVVSYAKRKVDDEEAGNFAKTKRLDGKRCTDLIVLNLPWRVEETALKNYFSRFGDVVMAQVKRDPNTNQSRGYGFIRFRDYDAQVMCLAERHFIDSRWCDVRIPISKT---EGDRQEVNRKLHIGQLTEDITADMLRDHFSQFGHITDVFVPRPFRSFAFITFEDPGVAASLLGEDQVINGQ-TLTVGSAVPK 265
BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Match: A0A0R3W3I1 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS4477 PE=4 SV=1) HSP 1 Score: 296.975 bits (759), Expect = 1.356e-90 Identity = 136/245 (55.51%), Postives = 183/245 (74.69%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK 834 D TLLLSTL QFP+ATGLKY S ++G RGVR++ R YPPP+GW+ Y V+ ++ D+E AKTK+++GK+CTDLIVLN+PWR ++ ALK YFS+FGDVVM QVKR+P+T +S+GY FIRF DYDAQVMCLAE+H ID+RWC+V+IP SK+ + EV K+H+G+L+E +TAD+LR F+Q+G + +++PRPFRSFAF++FED A SLLG + IN +T+ +A PK Sbjct: 45 DKTLLLSTLAAQFPRATGLKYTS-ESGCMRGVRYSDGRIYPPPDGWQNRVYKIVVSYAKRKVDDEEAGNFAKTKRLDGKRCTDLIVLNLPWRVEETALKNYFSRFGDVVMAQVKRDPNTNQSRGYGFIRFRDYDAQVMCLAERHFIDSRWCDVRIPISKT---EGDRQEVNRKLHIGQLTEDITADMLRDHFSQFGHITDVFVPRPFRSFAFITFEDPGVAASLLGEDQVINGH-TLTVGSAVPK 284
BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Match: tardbpl (TAR DNA binding protein [Source:NCBI gene;Acc:103025275]) HSP 1 Score: 233.802 bits (595), Expect = 1.787e-70 Identity = 118/256 (46.09%), Postives = 160/256 (62.50%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSV--QMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMN 861 DGT+LLST+ QFP A GL+Y+S + RGVR + P W Y KDNKRK D+ A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVKR+ T SKG+ F+RF DY+ Q+ ++++H ID RWC+ K+P SK Q P+ K+ VGR +E +TAD LR FF QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N+++ M+ Sbjct: 24 DGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAPDADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTSEQDLKDYFSTFGEVIMVQVKRDVKTGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADDLRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGTS-VHISNAEPKHNNSRQMMD 278
BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Match: tardbpl (TAR DNA binding protein [Source:NCBI gene;Acc:103025275]) HSP 1 Score: 230.335 bits (586), Expect = 2.163e-70 Identity = 121/261 (46.36%), Postives = 161/261 (61.69%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSV--QMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSN--HNQNNMNGRA 870 DGT+LLST+ QFP A GL+Y+S + RGVR + P W Y KDNKRK D+ A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVKR+ T SKG+ F+RF DY+ Q+ ++++H ID RWC+ K+P SK Q P+ K+ VGR +E +TAD LR FF QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK N H +N GR+ Sbjct: 24 DGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAPDADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTSEQDLKDYFSTFGEVIMVQVKRDVKTGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADDLRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGTS-VHISNAEPKHNNIHLFSNFPGRS 283
BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Match: tardbp (TAR DNA-binding protein 43-like [Source:NCBI gene;Acc:103044966]) HSP 1 Score: 226.098 bits (575), Expect = 1.705e-67 Identity = 117/259 (45.17%), Postives = 164/259 (63.32%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFK-----DNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMN 861 DGT+LLST++ QFP A GL+Y+S + RGVR + P GW Y K DNKRK D+ + + AK K+ + K +DLIVL +PW+T ++ LK YFS FG+V+MVQVKR+ T SKG+ F+RF +++ Q +A++H ID RWC+ K+P SK P+ K+ VGR +E +TAD LR FF QYG+V ++IP+PFR+FAFV+F D+ A SL G +L I V IS A PK N++++ M+ Sbjct: 24 DGTVLLSTVSAQFPGACGLRYRSPISQCMRGVRLVEGVLHAPENGWGNLVYVVNYPKEPALPDNKRKMDEIEASSAKMKRGD-HKTSDLIVLGLPWKTSEQDLKDYFSTFGEVIMVQVKRDVKTGNSKGFGFVRFGEWETQSKVIAQRHMIDGRWCDCKLPNSKQ---GPDEPMRSRKVFVGRCTEDMTADDLRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVASSLCGEDL-IVKGVSVHISNAEPKHNNSRHMMD 277
BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Match: msi2b (RNA-binding protein Musashi homolog 2 [Source:NCBI gene;Acc:103023867]) HSP 1 Score: 91.6633 bits (226), Expect = 6.538e-20 Identity = 58/201 (28.86%), Postives = 97/201 (48.26%), Query Frame = 1 Query: 340 CTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAE-QHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRG 924 C+ + + + W+T ++L+ YFSKFG++ V R+P T +S+G+ F+ FAD + L + H +D++ + K+ + + Q P+ KI VG LS + ++ +F Q+GKVE + R F FV+FE+E + + ++ +V A PK GRA+ G T D F G G Sbjct: 16 CSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLGQPHHELDSKTIDPKVAFPRRAQ--PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR---GLPYTMDAFMLGMG 211
BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Match: msi2b (RNA-binding protein Musashi homolog 2 [Source:NCBI gene;Acc:103023867]) HSP 1 Score: 91.2781 bits (225), Expect = 9.913e-20 Identity = 58/201 (28.86%), Postives = 97/201 (48.26%), Query Frame = 1 Query: 340 CTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAE-QHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRG 924 C+ + + + W+T ++L+ YFSKFG++ V R+P T +S+G+ F+ FAD + L + H +D++ + K+ + + Q P+ KI VG LS + ++ +F Q+GKVE + R F FV+FE+E + + ++ +V A PK GRA+ G T D F G G Sbjct: 16 CSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLGQPHHELDSKTIDPKVAFPRRAQ--PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR---GLPYTMDAFMLGMG 211
BLAST of TAR DNA-binding protein 43 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009806.1 (pep scaffold:Pmarinus_7.0:GL479354:9188:12030:-1 gene:ENSPMAG00000008859.1 transcript:ENSPMAT00000009806.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 228.794 bits (582), Expect = 4.372e-70 Identity = 115/254 (45.28%), Postives = 159/254 (62.60%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTY-------SCVLFKDNKRKSDDEQYTLAKTKKM--EGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK 834 DGTLL+S + QFP A GL+Y+ D +RGVR +PP GW +YT+ CVL +NKRK E+ +A KM + +DL+VL +PW T ++ LK YFS FG VV+ Q+K +P T KSKGY F+RFAD+++Q+ + +H I RWC+ K+P SK +P+ RN+I VGR E +T + LRSFF Q+G V +YIP+PFRSF FV+F +E AQSL G+++ I V I++A PK Sbjct: 23 DGTLLVSNVAAQFPGAVGLRYRPPDAQSFRGVRLVDGVLHPPENGWASYTFYVNFPKDPCVLGLENKRKM--EEVDMASASKMLRSEPRVSDLVVLGLPWTTTEDELKDYFSAFGSVVLSQIKTDPATGKSKGYGFVRFADHESQLKAMGMRHMIGGRWCDAKLPQSKMYPTDPD----RNRIFVGRCPEDITPEDLRSFFGQFGDVTDVYIPKPFRSFGFVTFANEHVAQSLCGQDV-IVKGASVHIASAEPK 269
BLAST of TAR DNA-binding protein 43 vs. Ensembl Sea Lamprey
Match: TARDBP (TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571]) HSP 1 Score: 180.259 bits (456), Expect = 2.626e-53 Identity = 90/195 (46.15%), Postives = 130/195 (66.67%), Query Frame = 1 Query: 271 DNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNN 855 DNKRK D+ + + K +K +DLIVL +PW+ ++ ++ YFS FG+V+M QVKR+ T SKG+ F+RF DY+ Q+ LA++H ID RWC+ K+P SK Q+ +A R KI VGR +E +TAD LR FF+Q+G+V ++IP+PFR+FAFV+F D+ AQ L G +L I V IS+A PK + + + Sbjct: 1 DNKRKMDEAEMSNVAKVKRSVQKTSDLIVLGLPWKASEQDIRDYFSTFGEVLMAQVKRDIKTGNSKGFGFVRFRDYETQLKVLAQRHMIDGRWCDCKLPNSKEQQVG-DAFRSR-KIFVGRCTEDITADDLRQFFSQFGEVTDVFIPKPFRAFAFVTFSDDQIAQGLCGEDLIIK-GTSVHISSAEPKFGYARGD 192
BLAST of TAR DNA-binding protein 43 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007723.1 (pep scaffold:Pmarinus_7.0:GL496487:1152:2091:-1 gene:ENSPMAG00000006977.1 transcript:ENSPMAT00000007723.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 102.449 bits (254), Expect = 1.669e-26 Identity = 45/103 (43.69%), Postives = 78/103 (75.73%), Query Frame = 1 Query: 271 DNKRKSDD-EQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSK 576 DNKRK D+ + + +AK K+ +K +DLIVL +PW+ +++ L+ YF++ GDV+MVQVKR+ + SKG+ F+RF+++++Q+ ++++H I RWC+VK+P +K Sbjct: 1 DNKRKMDESDAWNVAKIKR-SVQKTSDLIVLGLPWKCNEQDLRDYFTEVGDVLMVQVKRDAKSGTSKGFGFVRFSEFESQLKAISQRHLIGGRWCDVKLPNTK 102
BLAST of TAR DNA-binding protein 43 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004893.1 (pep scaffold:Pmarinus_7.0:GL479484:4:2056:-1 gene:ENSPMAG00000004449.1 transcript:ENSPMAT00000004893.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 76.2554 bits (186), Expect = 6.718e-16 Identity = 58/213 (27.23%), Postives = 95/213 (44.60%), Query Frame = 1 Query: 319 KKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADY-DAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNRN 939 K E ++ L V + + T +E L+ YF ++G + V ++ + +S+G+ F+ F+ + A H ID R E K S+ M P A+ KI VG + + + LR +F +YG++E + + R FAFV+F D ++ ++ + I A PK QN YG +Y GRGG NR+ Sbjct: 3 KDREPEQFRKLFVGGLSFETTEEGLRQYFEQWGSLTDCVVMKDTQSKRSRGFGFVTFSSMSEVDAAMSARPHKIDGRMVEPKRAVSREDSMRPGAHLSVKKIFVGGIKDDTDEEHLRDYFEKYGRIEIVEVMTERESGKKRGFAFVTFNDHDPVDKIVVQKYHTINGHNCEIRKALPKQE-LQN---------YGRGKSY---YSGRGGYNRD 202
BLAST of TAR DNA-binding protein 43 vs. Ensembl Sea Lamprey
Match: HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0 [Source:HGNC Symbol;Acc:HGNC:5030]) HSP 1 Score: 73.1738 bits (178), Expect = 3.552e-14 Identity = 50/198 (25.25%), Postives = 90/198 (45.45%), Query Frame = 1 Query: 349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRF-ADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPR-----PFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRG 924 L + + + T +E+++ +F ++G + V R+P T +S+G+ F+ + + + H +D R E K S+ + P A+ KI VG + + D LR +F++YG VES+ + R F FV+F D ++ ++ + + A S N++ G + G VFS GRG Sbjct: 35 LFIGGLSFETTEESMQKHFEQWGTLTDCVVMRDPHTKRSRGFGFVTYMSAEEVDAAMEVRPHHLDGRVVEAKRAISREDSLKPGAHLKVKKIFVGGIKDNTDEDHLRDYFSEYGMVESVDVMEDRQSGKKRGFGFVTFSDHDAVDKVVVQKYHTINGHKAEVRKAL--SKQEMNSLGGDPRQG-----ENSVFSKGRG 225 HSP 2 Score: 48.9062 bits (115), Expect = 2.287e-6 Identity = 29/93 (31.18%), Postives = 49/93 (52.69%), Query Frame = 1 Query: 337 KCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDA-QVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVR 612 K + V I TD++ L+ YFS++G V V V + + K +G+ F+ F+D+DA + + + H I+ EV+ SK +MN + R Sbjct: 122 KVKKIFVGGIKDNTDEDHLRDYFSEYGMVESVDVMEDRQSGKKRGFGFVTFSDHDAVDKVVVQKYHTINGHKAEVRKALSKQ-EMNSLGGDPR 213
BLAST of TAR DNA-binding protein 43 vs. Ensembl Yeast
Match: HRP1 (Subunit of cleavage factor I; cleavage factor I is a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences; required for genome stability [Source:SGD;Acc:S000005483]) HSP 1 Score: 60.077 bits (144), Expect = 5.754e-10 Identity = 37/172 (21.51%), Postives = 73/172 (42.44%), Query Frame = 1 Query: 334 KKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK 834 K+ + + + W T ++ L+ YF K+G V +++ ++P T +S+G+ F+ F + + QH +D + + K + Q + KI VG + V FF+Q+G + + R F FV+++ + + D + I A P+ Sbjct: 156 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQ------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 321
BLAST of TAR DNA-binding protein 43 vs. Ensembl Yeast
Match: NSR1 (Nucleolar protein that binds nuclear localization sequences; required for pre-rRNA processing and ribosome biogenesis; binds to single stranded telomeric DNA and mRNA; methylated by Hmt1p; interaction with Top1p and nucleolar localization are negatively regulated by polyphosphorylation [Source:SGD;Acc:S000003391]) HSP 1 Score: 57.7658 bits (138), Expect = 2.121e-9 Identity = 50/194 (25.77%), Postives = 88/194 (45.36%), Query Frame = 1 Query: 313 KTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFAD--YDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEA-------NEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIP------RPFRSFAFVSFED-ESTAQSLLGRELKINDDCVVTISAASPKSNHN 846 K K E ++ + V + W DDE LK F G V+ +V E T +S+GY ++ F + Y + + + ID R + SK N A +E + + +G LS D + F ++G+V S+ IP +P + F +V F + E ++L + + D+ V + +SP+ N++ Sbjct: 158 KQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQP-KGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNND 350
BLAST of TAR DNA-binding protein 43 vs. Ensembl Yeast
Match: MRD1 (Essential conserved small ribosomal subunit (40s) synthesis factor; component of the 90S preribosome; required for production of 18S rRNA and small ribosomal subunit; contains five consensus RNA-binding domains and binds to the pre-rRNA at two sites within the 18S region [Source:SGD;Acc:S000006316]) HSP 1 Score: 54.299 bits (129), Expect = 4.541e-8 Identity = 49/171 (28.65%), Postives = 79/171 (46.20%), Query Frame = 1 Query: 349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPD------TLKSKGYAFIRFADYDAQ--VMCLAEQHCIDNRWCEVKIPYSKSVQ---MNPEANEVRNKIHVGRLS-EAVTADVLRSFFNQYGKVESIYIPRPF----RSFAFVSF---------EDESTAQSLLGREL 786 + + N+ + T ++ L F F V+ QVK +PD TL S G+ F+ F + V+ + ID ++K+ + ++ Q ++N+ KI V L EA DV FN +G+++S+ +P+ F R FAFV F D+ LLGR L Sbjct: 665 IFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTL-SMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGKIIVKNLPFEATRKDVF-ELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGVHLLGRRL 833
BLAST of TAR DNA-binding protein 43 vs. Ensembl Yeast
Match: SNP1 (Component of U1 snRNP required for mRNA splicing via spliceosome; substrate of the arginine methyltransferase Hmt1p; may interact with poly(A) polymerase to regulate polyadenylation; homolog of human U1 70K protein; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000001323]) HSP 1 Score: 49.6766 bits (117), Expect = 5.883e-7 Identity = 27/84 (32.14%), Postives = 45/84 (53.57%), Query Frame = 1 Query: 349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHC-----IDNRWCEVKIPYSKSVQ 585 + + +P+ D+ L+ YF KFG++ +++ ++ T KSKGYAFI F D + M E I +R C V I ++V+ Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEIGVHRGIQIKDRICIVDIERGRTVK 192
BLAST of TAR DNA-binding protein 43 vs. Ensembl Nematostella
Match: EDO44940 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RU25]) HSP 1 Score: 173.711 bits (439), Expect = 1.390e-49 Identity = 97/255 (38.04%), Postives = 143/255 (56.08%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPE-GWETYTYSCVLFK--DNKRKSDDEQYTLAK-----TKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSN 840 DGTLLLS + QFP A GL+Y++ +T +RGVR D YPP E GW + V K D+ K E+ + K K+EG DLIVL +P+ T + +K YF++FG++ +VK +P+T +S+G+ F+RF + L+ H I R CEV++P K E V K+ VGRL E+ T L +F Q+G+V +YIP+PFR F FV+F A+ +L + +I+ ++ I+ A PKS Sbjct: 26 DGTLLLSNVNGQFPGACGLRYRNPETQAFRGVRLVEDVLYPPFEDGWGDTLFLVVPSKAADSASKRKIEESPIGKEPETKITKVEGVDVGDLIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLSTSHRIQGRLCEVRLPRPK------EELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHFGFVTFASGELAKKVLSQNHRIS-GSLLNITFAEPKST 273
BLAST of TAR DNA-binding protein 43 vs. Ensembl Nematostella
Match: EDO39879 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8S5]) HSP 1 Score: 69.3218 bits (168), Expect = 1.138e-13 Identity = 43/168 (25.60%), Postives = 83/168 (49.40%), Query Frame = 1 Query: 349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDA-QVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK 834 + + + W+T E L+ +F KFG++ V R+P T +S+G+ F+ F D A V+ + +D + + K+ K + + KI +G LS + + ++ +F+Q+GK+ + + R F FV+FE E++A + + ++ V + A PK Sbjct: 2 MFIGGLSWQTTAEGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGKKIDPKLAVPK--RAPAKMVTTTKKIFIGGLSTNTSEEDMKKYFSQFGKITETMLMFDKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKAQPK 167
BLAST of TAR DNA-binding protein 43 vs. Ensembl Nematostella
Match: EDO38417 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SCX6]) HSP 1 Score: 64.3142 bits (155), Expect = 2.561e-11 Identity = 54/185 (29.19%), Postives = 87/185 (47.03%), Query Frame = 1 Query: 313 KTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRF---ADYDAQVMCLAEQHCIDNRWCEVK--IPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQ-YGKVESI-YIPRPF----RSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK 834 KT+ + L V + + T E+LK YFSK+G++V V +K + T + +G+AF++F ++ DA V+ + H +D R + K P K + KI VG L + + +R +F + Y V+ I YI R F FVSF+ E T + + + V + A PK Sbjct: 19 KTRMTKDDDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEADA-VLNQVDPHVLDGRTIDPKPAAPIGKPPHLR------VKKIFVGGLKPETSDEKIREYFGKAYAPVKEIEYITEHSSNRRRGFCFVSFDSEDTVDKICETQFHNIEGNKVEVKRALPK 196
BLAST of TAR DNA-binding protein 43 vs. Ensembl Nematostella
Match: EDO49349 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RG33]) HSP 1 Score: 60.4622 bits (145), Expect = 9.315e-11 Identity = 43/155 (27.74%), Postives = 76/155 (49.03%), Query Frame = 1 Query: 349 LIVLNIPWRTDDEALKMYFSKFGDVV-MVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQ-HCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQY----GKVESIYI--------PRPFRSFAFVSFEDESTAQSL 771 + + + W T +E LK YFS++G +V V +KR+ +S+G+ F+ + D+ L ++ H +D+R E K + PEA KI VG L+ + ++ +FN G E I + P+ R FAFV+F+++ + + Sbjct: 2 IFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDG---RSRGFGFVTYESSDSVNEVLKKKDHVLDDREIEPKRSVPRDESGAPEAMSKTRKIFVGGLASTTVEEDIKEYFNSLCRKNGMGEVIDVDLKRDRDNPKRIRGFAFVTFDNDEIVEKV 153
BLAST of TAR DNA-binding protein 43 vs. Ensembl Nematostella
Match: EDO33389 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSE1]) HSP 1 Score: 58.151 bits (139), Expect = 5.388e-10 Identity = 39/146 (26.71%), Postives = 66/146 (45.21%), Query Frame = 1 Query: 349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQ-HCIDNRWCEVKIPYSKSVQMNPEANEVRN--KIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTA 762 + V + TD L+ YF K+G+V + +P T +S+ + FI F D + ++ H +D + + K + P N KI VG L+ + + L +F YGKV S+ + + R F FV+FE + + Sbjct: 3 IFVGGLAISTDSAGLQGYFEKYGEVTDCVLMTDPVTKRSRCFGFITFRDPSVVQNVMDDKPHQLDGKMIDPKPAVPRGPGQGPPQGNQNNEFKIFVGGLAHSTSKQDLEDYFTAYGKVVSVNLMVDPQTQKMRGFGFVTFESKDSV 148
BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Match: tardbp (TAR DNA-binding protein 43-like [Source:NCBI gene;Acc:101167445]) HSP 1 Score: 231.491 bits (589), Expect = 1.634e-69 Identity = 118/262 (45.04%), Postives = 160/262 (61.07%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYG 885 DGT+LLST+ QFP A GL+++S + RGVR + P GW Y KDNKRK D+ + A K K +DLIVL +PW+T ++ LK YFS FG+V+MVQVKR+ T SKG+ F+RF +Y+AQ ++++H ID RWC+ K+P SK P+ K+ VGR +E +T D LR FF QYG+V ++IP+PFR+FAFV+F D+ AQSL G +L I V IS A PK + Q + R G+G Sbjct: 24 DGTVLLSTVAAQFPGACGLRFRSPVSQCMRGVRLVEGVLHAPETGWGNVVYVVNYPKDNKRKMDEIDASSAVKMKRGDMKTSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFTEYEAQEKVISQRHMIDGRWCDCKLPNSKQ---GPDEPLRSRKVFVGRCTEDMTTDDLRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIK-GVSVHISNAEPKHGNRQYDRTARFGNGFG 281
BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Match: tardbpl (TAR DNA binding protein [Source:NCBI gene;Acc:101173545]) HSP 1 Score: 220.705 bits (561), Expect = 1.040e-66 Identity = 116/260 (44.62%), Postives = 159/260 (61.15%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPG 879 DGT+LLS++ QFP A GL+Y++ ++ RGVR + P W Y KDNKRK ++ A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVKR+ T SKG+ F+RFADY+ Q + ++H ID RWC+ K+P SK + P+ KI VGR +E +T D LR +F QYG+V ++IP+PFR+FAFV+F D+ AQ+L G +L I V IS A PK HN + R PG Sbjct: 24 DGTVLLSSVAAQFPGACGLRYRNPESQCMRGVRLVEGVLHAPENEWGNLVYVVNYPKDNKRKMEEIDAASAVKVKRGFQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFADYETQTKVITQRHMIDGRWCDCKLPNSK---VCPDEPMRSRKIFVGRCTEDMTPDELRQYFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQALCGEDLIIK-GVSVHISNAEPK--HNNIHQLFRNFPG 277
BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Match: tardbpl (TAR DNA binding protein [Source:NCBI gene;Acc:101173545]) HSP 1 Score: 201.06 bits (510), Expect = 7.062e-60 Identity = 99/218 (45.41%), Postives = 139/218 (63.76%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDE 753 DGT+LLS++ QFP A GL+Y++ ++ RGVR + P W Y KDNKRK ++ A K +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVKR+ T SKG+ F+RFADY+ Q + ++H ID RWC+ K+P SK + P+ KI VGR +E +T D LR +F QYG+V ++IP+PFR+FAFV+F D+ Sbjct: 24 DGTVLLSSVAAQFPGACGLRYRNPESQCMRGVRLVEGVLHAPENEWGNLVYVVNYPKDNKRKMEEIDAASAVKVKRGFQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFADYETQTKVITQRHMIDGRWCDCKLPNSK---VCPDEPMRSRKIFVGRCTEDMTPDELRQYFMQYGEVTDVFIPKPFRAFAFVTFADD 238
BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Match: msi2a (musashi RNA binding protein 2 [Source:NCBI gene;Acc:101163923]) HSP 1 Score: 86.6557 bits (213), Expect = 2.841e-18 Identity = 56/198 (28.28%), Postives = 95/198 (47.98%), Query Frame = 1 Query: 349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHC-IDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRG 924 + + + W+T ++L+ YFSKFG++ V R+P T +S+G+ F+ F D + LA+QH +D++ + K+ + + Q P+ KI VG LS + ++ +F Q+GKV+ + R F F++FE E + + ++ +V A PK GRA+ G T D F G G Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQQHHELDSKTIDPKVAFPRRAQ--PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR---GLPYTMDAFMLGMG 215
BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Match: msi2a (musashi RNA binding protein 2 [Source:NCBI gene;Acc:101163923]) HSP 1 Score: 86.6557 bits (213), Expect = 3.809e-18 Identity = 56/198 (28.28%), Postives = 95/198 (47.98%), Query Frame = 1 Query: 349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHC-IDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRG 924 + + + W+T ++L+ YFSKFG++ V R+P T +S+G+ F+ F D + LA+QH +D++ + K+ + + Q P+ KI VG LS + ++ +F Q+GKV+ + R F F++FE E + + ++ +V A PK GRA+ G T D F G G Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQQHHELDSKTIDPKVAFPRRAQ--PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR---GLPYTMDAFMLGMG 215
BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Match: SMESG000012144.1 (SMESG000012144.1) HSP 1 Score: 759.599 bits (1960), Expect = 0.000e+0 Identity = 434/434 (100.00%), Postives = 434/434 (100.00%), Query Frame = 1 Query: 37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLXXXXXXXXXXXXXXXFTTPDMSQNTNAMAALNIINNPSVVXXXXXXXXXXXQQGDVTSGHLMPTVSSXXXXXXXXXKPDVGXXXXXXXXXXXXXXXXFLYSHIPNQNSWGY 1338 MKYVIVCEEEEEPTIELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLQQQHMHASQAQAQRQFTTPDMSQNTNAMAALNIINNPSVVAAIMSAAAARAQQGDVTSGHLMPTVSSGLGGGGYMGKPDVGQNQQQSQQPQPQPQQQFLYSHIPNQNSWGY Sbjct: 1 MKYVIVCEEEEEPTIELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLQQQHMHASQAQAQRQFTTPDMSQNTNAMAALNIINNPSVVAAIMSAAAARAQQGDVTSGHLMPTVSSGLGGGGYMGKPDVGQNQQQSQQPQPQPQQQFLYSHIPNQNSWGY 434
BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Match: SMESG000012144.1 (SMESG000012144.1) HSP 1 Score: 748.814 bits (1932), Expect = 0.000e+0 Identity = 431/434 (99.31%), Postives = 431/434 (99.31%), Query Frame = 1 Query: 37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLXXXXXXXXXXXXXXXFTTPDMSQNTNAMAALNIINNPSVVXXXXXXXXXXXQQGDVTSGHLMPTVSSXXXXXXXXXKPDVGXXXXXXXXXXXXXXXXFLYSHIPNQNSWGY 1338 MKYVIVCEEEEEPTIELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSK MNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLQQQHMHASQAQAQRQFTTPDMSQNTNAMAALNIINNPSVVAAIMSAAAARAQQGDVTSGHLMPTVSSGLGGGGYMGKPDVGQNQQQSQQPQPQPQQQFLYSHIPNQNSWGY Sbjct: 1 MKYVIVCEEEEEPTIELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSK---MNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLQQQHMHASQAQAQRQFTTPDMSQNTNAMAALNIINNPSVVAAIMSAAAARAQQGDVTSGHLMPTVSSGLGGGGYMGKPDVGQNQQQSQQPQPQPQQQFLYSHIPNQNSWGY 431
BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Match: SMESG000012144.1 (SMESG000012144.1) HSP 1 Score: 748.814 bits (1932), Expect = 0.000e+0 Identity = 431/434 (99.31%), Postives = 431/434 (99.31%), Query Frame = 1 Query: 37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLXXXXXXXXXXXXXXXFTTPDMSQNTNAMAALNIINNPSVVXXXXXXXXXXXQQGDVTSGHLMPTVSSXXXXXXXXXKPDVGXXXXXXXXXXXXXXXXFLYSHIPNQNSWGY 1338 MKYVIVCEEEEEPTIELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYD DGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLQQQHMHASQAQAQRQFTTPDMSQNTNAMAALNIINNPSVVAAIMSAAAARAQQGDVTSGHLMPTVSSGLGGGGYMGKPDVGQNQQQSQQPQPQPQQQFLYSHIPNQNSWGY Sbjct: 1 MKYVIVCEEEEEPTIELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYD---DGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLQQQHMHASQAQAQRQFTTPDMSQNTNAMAALNIINNPSVVAAIMSAAAARAQQGDVTSGHLMPTVSSGLGGGGYMGKPDVGQNQQQSQQPQPQPQQQFLYSHIPNQNSWGY 431
BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Match: SMESG000032661.1 (SMESG000032661.1) HSP 1 Score: 280.411 bits (716), Expect = 8.534e-88 Identity = 145/273 (53.11%), Postives = 196/273 (71.79%), Query Frame = 1 Query: 37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDN-KRKSDDE-QYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQ 849 M Y+ VCE EE TIE+P+EED T+LL+TL FP GLKY++ +T +R ++ + +FY P EGWE + CV KDN KRK D+E + L K+K++EG+KCTDLIVLN+ W+ D+E L+ YFSKFG++V+VQVK++ +T SKGYAFIRFADY AQV+CLAE+H ID RWC VK+P+SK+ + E+ KIHVG SE ++ + LR F QYG V I+IP+PFR+FAFV+F+ TAQSL+G+ + IN +TI +A PK N N+ Sbjct: 1 MYYIAVCEYEESETIEIPVEEDDTVLLTTLGGIFPNVCGLKYRAPETNTFRALKLSDGKFYKPVEGWEDLKFYCVFPKDNNKRKIDEEIEKPLQKSKRLEGRKCTDLIVLNLGWKVDEETLRKYFSKFGELVLVQVKKDRETSHSKGYAFIRFADYAAQVLCLAEKHLIDGRWCAVKVPFSKN---EADKQEISKKIHVGYASEEISMEDLRIAFEQYGYVTDIFIPKPFRNFAFVTFDSSDTAQSLIGQSININ-GITLTIGSAVPKINSNR 269
BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Match: SMESG000032660.1 (SMESG000032660.1) HSP 1 Score: 262.307 bits (669), Expect = 4.699e-81 Identity = 150/377 (39.79%), Postives = 211/377 (55.97%), Query Frame = 1 Query: 100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFK--DNKRKSDDE-QYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQN------------NMNGRAQPGYGHWNTYD------------------VFSD-----GRGGMNRNRSCQNKLMPNSNQMPHEWSNYLXXXXXXXXXXXXXXXFTTPDMSQNTNAMAALNIINNP 1116 D T+L +TL+ QFPK +GLKY+ + +R ++ + + + P EGW + CV K DNKRK +E + KTK+++ +KCTDLIVLN+ W+ D+E L+ YFSKFGD+V+VQ+K++ +T SKGYAF+RFADYD QV+CLAEQH ID RWC VK+P+SKS + E+ KIHV +E + + LR F +YG V I+IP+PFR+FAFV+FE AQ L+GR + + +TI +A PK N+ N G G W++Y+ + + + + S Q+ LM N PH L + Q+ Q D+ QNT AMAALNI+NNP Sbjct: 22 DDTILFTTLSGQFPKVSGLKYRFSGSLNFRAIKLSEGKLFKPLEGWGSLKLICVFPKEIDNKRKCKEEYEIPTPKTKRLDTRKCTDLIVLNLGWKVDEEMLRNYFSKFGDLVLVQIKKDRETNHSKGYAFVRFADYDGQVLCLAEQHLIDGRWCSVKVPFSKS---EADKQEITKKIHVSYSAEELEMEDLRKAFEEYGYVVDIFIPKPFRNFAFVTFELSEVAQQLIGRCVTVKGH-TLTIGSAVPKITGNKKLPIPAQFPICPYNEQGPMTAGRYGWSSYEPAPMQSSRYKARQFRNSAIMGNYGTLMSTAAVANSSSNQSYLMSNGRIHPHG----LISFEYNHQQSSQQAVPAATDIGQNTAAMAALNILNNP 390 The following BLAST results are available for this feature:
BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of TAR DNA-binding protein 43 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of TAR DNA-binding protein 43 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of TAR DNA-binding protein 43 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 4
BLAST of TAR DNA-binding protein 43 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30034732 ID=SMED30034732|Name=TAR DNA-binding protein 43|organism=Schmidtea mediterranea sexual|type=transcript|length=1830bpback to top protein sequence of SMED30034732-orf-1 >SMED30034732-orf-1 ID=SMED30034732-orf-1|Name=SMED30034732-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=435bp MKYVIVCEEEEEPTIELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIYback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|