TAR DNA-binding protein 43

Overview
NameTAR DNA-binding protein 43
Smed IDSMED30034732
Length (bp)1830
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of TAR DNA-binding protein 43 (SMED30034732) t-SNE clustered cells

Violin plots show distribution of expression levels for TAR DNA-binding protein 43 (SMED30034732) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of TAR DNA-binding protein 43 (SMED30034732) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for TAR DNA-binding protein 43 (SMED30034732) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30034732

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30034732SMESG000012144.1 Contig4786uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30034732SMESG000012144.1 Contig4786newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30034732SMESG000030736.1 SMESG000030738.1 Contig4786uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30034732SMESG000030736.1 SMESG000030738.1 Contig4786newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
X2 cellSMED30034732SMESG000012144.1 SmedASXL_016365SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
parenchymal cellSMED30034732SMESG000012144.1 dd_Smed_v4_3328_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30034732SMESG000012144.1 dd_Smed_v4_3328_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Match: TARDBP (TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571])

HSP 1 Score: 230.72 bits (587), Expect = 2.505e-70
Identity = 120/257 (46.69%), Postives = 162/257 (63.04%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867
            DGT+LLST+T QFP A GL+Y++  +   RGVR      + P  GW    Y     KDNKRK D+   + A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RF +Y+ QV  ++++H ID RWC+ K+P SK  Q  P  +    K+ VGR +E +T D LR FF+QYG V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N N Q   +GR
Sbjct:   23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRS---RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Match: TARDBP (TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571])

HSP 1 Score: 230.72 bits (587), Expect = 2.505e-70
Identity = 120/257 (46.69%), Postives = 162/257 (63.04%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867
            DGT+LLST+T QFP A GL+Y++  +   RGVR      + P  GW    Y     KDNKRK D+   + A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RF +Y+ QV  ++++H ID RWC+ K+P SK  Q  P  +    K+ VGR +E +T D LR FF+QYG V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N N Q   +GR
Sbjct:   23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRS---RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Match: AL109811.3 (novel protein)

HSP 1 Score: 230.72 bits (587), Expect = 2.505e-70
Identity = 120/257 (46.69%), Postives = 162/257 (63.04%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867
            DGT+LLST+T QFP A GL+Y++  +   RGVR      + P  GW    Y     KDNKRK D+   + A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RF +Y+ QV  ++++H ID RWC+ K+P SK  Q  P  +    K+ VGR +E +T D LR FF+QYG V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N N Q   +GR
Sbjct:   23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRS---RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Match: TARDBP (TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571])

HSP 1 Score: 230.72 bits (587), Expect = 2.512e-70
Identity = 120/257 (46.69%), Postives = 162/257 (63.04%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867
            DGT+LLST+T QFP A GL+Y++  +   RGVR      + P  GW    Y     KDNKRK D+   + A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RF +Y+ QV  ++++H ID RWC+ K+P SK  Q  P  +    K+ VGR +E +T D LR FF+QYG V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N N Q   +GR
Sbjct:   23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRS---RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Match: TARDBP (TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571])

HSP 1 Score: 230.72 bits (587), Expect = 2.512e-70
Identity = 120/257 (46.69%), Postives = 162/257 (63.04%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867
            DGT+LLST+T QFP A GL+Y++  +   RGVR      + P  GW    Y     KDNKRK D+   + A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RF +Y+ QV  ++++H ID RWC+ K+P SK  Q  P  +    K+ VGR +E +T D LR FF+QYG V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N N Q   +GR
Sbjct:   23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRS---RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Celegans
Match: tdp-1 (Tar DNA-binding protein homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:D0VWM8])

HSP 1 Score: 139.813 bits (351), Expect = 7.488e-36
Identity = 94/302 (31.13%), Postives = 143/302 (47.35%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRF--ASDRFYPPPEGWETYTYSCVLFKDNK--RKSDDEQYTLAKTKKM-----------------------EGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLA-EQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGK-------VESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTY 900
            DG +L++TL   FP ATGLKYK+  TG  R V+   +  +   P +GWE  T+  ++   ++  R       T AK +K+                          +  DLIVL + ++T DE  + YF   G VV  ++KR+ D   SKG+ F+R +    Q   LA  QH ID R C+VK+P  +S+Q + +     ++I VGRL++ V    LR  F    K       V  ++IP+PFR FAFV+      A+ ++ +     +   V +S A P+  +NQ+       P YG    Y
Sbjct:   65 DGVVLMTTLQASFPGATGLKYKNPKTGANRAVQVDPSGLKLIAPADGWENKTFFVIVAPQSERVRALSSADATSAKRRKVGSSDDSDSDDGRDGRSGRKRAVERDSQPVDLIVLGVDFKTTDECFQKYFEDIGTVVFCEIKRKSDG-NSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVKVPDGRSLQ-DKQGRPSISRIFVGRLTDKVDEHQLRKVFGDEAKSYIETAVVTDVFIPKPFRGFAFVTLSSAEAAERIVSKGSLTVNGLSVGLSIAQPREENNQS-----VGPDYGLPAGY 359
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Celegans
Match: tdp-1 (Tar DNA-binding protein homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:D0VWM8])

HSP 1 Score: 138.272 bits (347), Expect = 2.175e-35
Identity = 94/302 (31.13%), Postives = 140/302 (46.36%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRF--ASDRFYPPPEGWETYTYSCVLFKDNK--RKSDDEQYTLAKTKKM-----------------------EGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLA-EQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGK-------VESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTY 900
            DG +L++TL   FP ATGLKYK+  TG  R V+   +  +   P +GWE  T+  ++   ++  R       T AK +K+                          +  DLIVL + ++T DE  + YF   G VV  ++KR+ D   SKG+ F+R +    Q   LA  QH ID R C+VK+P  +  Q  P      ++I VGRL++ V    LR  F    K       V  ++IP+PFR FAFV+      A+ ++ +     +   V +S A P+  +NQ+       P YG    Y
Sbjct:   65 DGVVLMTTLQASFPGATGLKYKNPKTGANRAVQVDPSGLKLIAPADGWENKTFFVIVAPQSERVRALSSADATSAKRRKVGSSDDSDSDDGRDGRSGRKRAVERDSQPVDLIVLGVDFKTTDECFQKYFEDIGTVVFCEIKRKSDG-NSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVKVPDGRDKQGRPSI----SRIFVGRLTDKVDEHQLRKVFGDEAKSYIETAVVTDVFIPKPFRGFAFVTLSSAEAAERIVSKGSLTVNGLSVGLSIAQPREENNQS-----VGPDYGLPAGY 356
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Celegans
Match: sqd-1 (Homologous to Drosophila SQD (Squid) protein [Source:UniProtKB/TrEMBL;Acc:Q8MXR6])

HSP 1 Score: 73.1738 bits (178), Expect = 6.396e-14
Identity = 47/169 (27.81%), Postives = 80/169 (47.34%), Query Frame = 1 
Query:  271 DNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIP-----RPFRSFAFVSFEDESTA 762
            DNK   +  +         +G +   + V  I    ++E L  +F+++G+V   QVK +    +S+G+AF+ F   +   + LA +          +    KSV++ P  +    K+ VG L    +   LRS F Q+GKV+ I  P     +  R+FAF+ FE+E +A
Sbjct:    5 DNKINGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAARE---------QTIKGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESA 164
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Celegans
Match: sqd-1 (Homologous to Drosophila SQD (Squid) protein [Source:UniProtKB/TrEMBL;Acc:Q8MXR6])

HSP 1 Score: 73.1738 bits (178), Expect = 6.396e-14
Identity = 47/169 (27.81%), Postives = 80/169 (47.34%), Query Frame = 1 
Query:  271 DNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIP-----RPFRSFAFVSFEDESTA 762
            DNK   +  +         +G +   + V  I    ++E L  +F+++G+V   QVK +    +S+G+AF+ F   +   + LA +          +    KSV++ P  +    K+ VG L    +   LRS F Q+GKV+ I  P     +  R+FAF+ FE+E +A
Sbjct:    5 DNKINGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAARE---------QTIKGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESA 164
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Celegans
Match: sqd-1 (Homologous to Drosophila SQD (Squid) protein [Source:UniProtKB/TrEMBL;Acc:Q8MXR6])

HSP 1 Score: 73.1738 bits (178), Expect = 6.396e-14
Identity = 47/169 (27.81%), Postives = 80/169 (47.34%), Query Frame = 1 
Query:  271 DNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIP-----RPFRSFAFVSFEDESTA 762
            DNK   +  +         +G +   + V  I    ++E L  +F+++G+V   QVK +    +S+G+AF+ F   +   + LA +          +    KSV++ P  +    K+ VG L    +   LRS F Q+GKV+ I  P     +  R+FAF+ FE+E +A
Sbjct:    5 DNKINGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAARE---------QTIKGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESA 164
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Match: TBPH (gene:FBgn0025790 transcript:FBtr0089626)

HSP 1 Score: 248.825 bits (634), Expect = 4.717e-77
Identity = 146/331 (44.11%), Postives = 206/331 (62.24%), Query Frame = 1 
Query:   37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPP--EGWETYTYSCVLFKDNKRKSDDE-QYTLAKTKKMEGK-KCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFS---------DGRGGMNRNRSCQNKLMPNSNQMPHE 990
            M +V V EEE +  IELP EEDGTLLLSTL  QFP + GLKY++ DT   RGVR    R +PP    GW  Y Y CV  K+NKRKSDD  + + AKTK++E + +CTDLIVL +PW+T +E+L+ YF  +G+V+M Q+K++  + +SKG+ F+RF  YDAQ+  L  +H ID RWCEVK+P SK +      ++V  K+ VGR +E + +D LR +F+++G+V  ++IPRPFR+F+FV+F D   AQSL G E  I     V +S A+PK+  N+N         Y   N++ + S          GR G +R R  Q  ++  S + P +
Sbjct:    1 MDFVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGM-----GHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCG-EDHIIKGVSVHVSNAAPKAEQNRNQQ--VQSYNYNSANSFGMHSYHPQGNHMNPGRNGHHRGR--QFSILDGSERGPQQ 321
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Match: TBPH (gene:FBgn0025790 transcript:FBtr0089625)

HSP 1 Score: 253.832 bits (647), Expect = 1.458e-76
Identity = 135/276 (48.91%), Postives = 187/276 (67.75%), Query Frame = 1 
Query:   37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPP--EGWETYTYSCVLFKDNKRKSDDE-QYTLAKTKKMEGK-KCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQN 852
            M +V V EEE +  IELP EEDGTLLLSTL  QFP + GLKY++ DT   RGVR    R +PP    GW  Y Y CV  K+NKRKSDD  + + AKTK++E + +CTDLIVL +PW+T +E+L+ YF  +G+V+M Q+K++  + +SKG+ F+RF  YDAQ+  L  +H ID RWCEVK+P SK +      ++V  K+ VGR +E + +D LR +F+++G+V  ++IPRPFR+F+FV+F D   AQSL G E  I     V +S A+PK+  N+N
Sbjct:    1 MDFVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGM-----GHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCG-EDHIIKGVSVHVSNAAPKAEQNRN 270
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Match: TBPH (gene:FBgn0025790 transcript:FBtr0089624)

HSP 1 Score: 253.832 bits (647), Expect = 1.458e-76
Identity = 135/276 (48.91%), Postives = 187/276 (67.75%), Query Frame = 1 
Query:   37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPP--EGWETYTYSCVLFKDNKRKSDDE-QYTLAKTKKMEGK-KCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQN 852
            M +V V EEE +  IELP EEDGTLLLSTL  QFP + GLKY++ DT   RGVR    R +PP    GW  Y Y CV  K+NKRKSDD  + + AKTK++E + +CTDLIVL +PW+T +E+L+ YF  +G+V+M Q+K++  + +SKG+ F+RF  YDAQ+  L  +H ID RWCEVK+P SK +      ++V  K+ VGR +E + +D LR +F+++G+V  ++IPRPFR+F+FV+F D   AQSL G E  I     V +S A+PK+  N+N
Sbjct:    1 MDFVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGM-----GHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCG-EDHIIKGVSVHVSNAAPKAEQNRN 270
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Match: TBPH (gene:FBgn0025790 transcript:FBtr0089627)

HSP 1 Score: 253.832 bits (647), Expect = 1.458e-76
Identity = 135/276 (48.91%), Postives = 187/276 (67.75%), Query Frame = 1 
Query:   37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPP--EGWETYTYSCVLFKDNKRKSDDE-QYTLAKTKKMEGK-KCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQN 852
            M +V V EEE +  IELP EEDGTLLLSTL  QFP + GLKY++ DT   RGVR    R +PP    GW  Y Y CV  K+NKRKSDD  + + AKTK++E + +CTDLIVL +PW+T +E+L+ YF  +G+V+M Q+K++  + +SKG+ F+RF  YDAQ+  L  +H ID RWCEVK+P SK +      ++V  K+ VGR +E + +D LR +F+++G+V  ++IPRPFR+F+FV+F D   AQSL G E  I     V +S A+PK+  N+N
Sbjct:    1 MDFVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGM-----GHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCG-EDHIIKGVSVHVSNAAPKAEQNRN 270
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Match: TBPH (gene:FBgn0025790 transcript:FBtr0301643)

HSP 1 Score: 253.832 bits (647), Expect = 1.458e-76
Identity = 135/276 (48.91%), Postives = 187/276 (67.75%), Query Frame = 1 
Query:   37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPP--EGWETYTYSCVLFKDNKRKSDDE-QYTLAKTKKMEGK-KCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQN 852
            M +V V EEE +  IELP EEDGTLLLSTL  QFP + GLKY++ DT   RGVR    R +PP    GW  Y Y CV  K+NKRKSDD  + + AKTK++E + +CTDLIVL +PW+T +E+L+ YF  +G+V+M Q+K++  + +SKG+ F+RF  YDAQ+  L  +H ID RWCEVK+P SK +      ++V  K+ VGR +E + +D LR +F+++G+V  ++IPRPFR+F+FV+F D   AQSL G E  I     V +S A+PK+  N+N
Sbjct:    1 MDFVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGM-----GHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCG-EDHIIKGVSVHVSNAAPKAEQNRN 270
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
Match: tardbpl (TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1])

HSP 1 Score: 231.491 bits (589), Expect = 1.948e-69
Identity = 116/256 (45.31%), Postives = 159/256 (62.11%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSV--QMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMN 861
            DGT+LLST+  QFP A GL+Y+S  +   RGVR      + P   W    Y     KDNKRK D+     A   K   +K +DLIVL +PW+T ++ LK YF  FG+V+MVQVKR+  +  SKG+ F+RF DY+ Q+  ++++H ID RWC+ K+P SK    Q  P+      K+ VGR +E +TAD LR FF QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N+++  M+
Sbjct:   24 DGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAPEADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGTS-VHISNAEPKHNNSRQMMD 278
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
Match: tardbpl (TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1])

HSP 1 Score: 228.024 bits (580), Expect = 2.085e-69
Identity = 119/262 (45.42%), Postives = 160/262 (61.07%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSV--QMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSN---HNQNNMNGRA 870
            DGT+LLST+  QFP A GL+Y+S  +   RGVR      + P   W    Y     KDNKRK D+     A   K   +K +DLIVL +PW+T ++ LK YF  FG+V+MVQVKR+  +  SKG+ F+RF DY+ Q+  ++++H ID RWC+ K+P SK    Q  P+      K+ VGR +E +TAD LR FF QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N   H  +N  GR+
Sbjct:   24 DGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAPEADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGTS-VHISNAEPKHNNIHHLFSNFPGRS 284
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
Match: tardbpl (TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1])

HSP 1 Score: 228.024 bits (580), Expect = 2.085e-69
Identity = 119/262 (45.42%), Postives = 160/262 (61.07%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSV--QMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSN---HNQNNMNGRA 870
            DGT+LLST+  QFP A GL+Y+S  +   RGVR      + P   W    Y     KDNKRK D+     A   K   +K +DLIVL +PW+T ++ LK YF  FG+V+MVQVKR+  +  SKG+ F+RF DY+ Q+  ++++H ID RWC+ K+P SK    Q  P+      K+ VGR +E +TAD LR FF QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N   H  +N  GR+
Sbjct:   24 DGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAPEADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGTS-VHISNAEPKHNNIHHLFSNFPGRS 284
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
Match: tardbpl (TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1])

HSP 1 Score: 227.639 bits (579), Expect = 2.457e-69
Identity = 118/260 (45.38%), Postives = 160/260 (61.54%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSN---HNQNNMNGRA 870
            DGT+LLST+  QFP A GL+Y+S  +   RGVR      + P   W    Y     KDNKRK D+     A   K   +K +DLIVL +PW+T ++ LK YF  FG+V+MVQVKR+  +  SKG+ F+RF DY+ Q+  ++++H ID RWC+ K+P SK+    P+      K+ VGR +E +TAD LR FF QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N   H  +N  GR+
Sbjct:   24 DGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAPEADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKA---GPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGTS-VHISNAEPKHNNIHHLFSNFPGRS 279
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
Match: tardbpl (TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1])

HSP 1 Score: 227.639 bits (579), Expect = 2.457e-69
Identity = 118/260 (45.38%), Postives = 160/260 (61.54%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSN---HNQNNMNGRA 870
            DGT+LLST+  QFP A GL+Y+S  +   RGVR      + P   W    Y     KDNKRK D+     A   K   +K +DLIVL +PW+T ++ LK YF  FG+V+MVQVKR+  +  SKG+ F+RF DY+ Q+  ++++H ID RWC+ K+P SK+    P+      K+ VGR +E +TAD LR FF QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N   H  +N  GR+
Sbjct:   24 DGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAPEADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKA---GPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGTS-VHISNAEPKHNNIHHLFSNFPGRS 279
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Match: jarid2 (jumonji and AT-rich interaction domain containing 2 [Source:Xenbase;Acc:XB-GENE-982166])

HSP 1 Score: 240.35 bits (612), Expect = 1.683e-72
Identity = 129/283 (45.58%), Postives = 181/283 (63.96%), Query Frame = 1 
Query:   31 IKMKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPG 879
            ++M+Y+ V E+E E  +E+P E+DGT+LLST+T QFP A GL+Y++      RGVR      + P  GW    Y     KDNKRK D+   + A   K    K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RFADY+ QV  ++++H ID RWC+ K+P SKS    P+      K+ VGR +E ++A+ LR FF+QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V +S A PK N+N+    G   PG
Sbjct:   10 MEMEYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILHAPENGWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAVTKTSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCKLPNSKS----PDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIK-GVSVHVSTAEPKHNNNRQLERGGRFPG 287
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Match: jarid2 (jumonji and AT-rich interaction domain containing 2 [Source:Xenbase;Acc:XB-GENE-982166])

HSP 1 Score: 166.777 bits (421), Expect = 9.345e-46
Identity = 86/185 (46.49%), Postives = 120/185 (64.86%), Query Frame = 1 
Query:   31 IKMKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQ 585
            ++M+Y+ V E+E E  +E+P E+DGT+LLST+T QFP A GL+Y++      RGVR      + P  GW    Y     KDNKRK D+   + A   K    K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RFADY+ QV  ++++H ID RWC+ K+P SK  Q
Sbjct:    1 MEMEYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILHAPENGWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAVTKTSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCKLPNSKVAQ 185
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Match: kcnj4 (potassium inwardly rectifying channel subfamily J member 4 [Source:Xenbase;Acc:XB-GENE-493748])

HSP 1 Score: 84.7297 bits (208), Expect = 8.422e-18
Identity = 57/198 (28.79%), Postives = 95/198 (47.98%), Query Frame = 1 
Query:  349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAE-QHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRG 924
            + +  + W+T  ++L+ YF+KFG++    V R+P T +S+G+ F+ FAD  +    LA+  H +D++  + K+ + +  Q  P+      KI VG LS     + ++ +F Q+GKVE   +         R F FV+FE E   + +        ++ +V    A PK         GRA+   G   T D F  G G
Sbjct:    1 MFIGGLSWQTSPDSLRDYFNKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQPHHELDSKTIDPKVAFPRRAQ--PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEIEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR---GLPYTMDAFMLGMG 193
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Match: kcnj4 (potassium inwardly rectifying channel subfamily J member 4 [Source:Xenbase;Acc:XB-GENE-493748])

HSP 1 Score: 85.1149 bits (209), Expect = 2.290e-17
Identity = 57/198 (28.79%), Postives = 95/198 (47.98%), Query Frame = 1 
Query:  349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAE-QHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRG 924
            + +  + W+T  ++L+ YF+KFG++    V R+P T +S+G+ F+ FAD  +    LA+  H +D++  + K+ + +  Q  P+      KI VG LS     + ++ +F Q+GKVE   +         R F FV+FE E   + +        ++ +V    A PK         GRA+   G   T D F  G G
Sbjct:   23 MFIGGLSWQTSPDSLRDYFNKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQPHHELDSKTIDPKVAFPRRAQ--PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEIEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR---GLPYTMDAFMLGMG 215
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Match: kcnj4 (potassium inwardly rectifying channel subfamily J member 4 [Source:Xenbase;Acc:XB-GENE-493748])

HSP 1 Score: 85.1149 bits (209), Expect = 2.811e-17
Identity = 57/198 (28.79%), Postives = 95/198 (47.98%), Query Frame = 1 
Query:  349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAE-QHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRG 924
            + +  + W+T  ++L+ YF+KFG++    V R+P T +S+G+ F+ FAD  +    LA+  H +D++  + K+ + +  Q  P+      KI VG LS     + ++ +F Q+GKVE   +         R F FV+FE E   + +        ++ +V    A PK         GRA+   G   T D F  G G
Sbjct:   23 MFIGGLSWQTSPDSLRDYFNKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQPHHELDSKTIDPKVAFPRRAQ--PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEIEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR---GLPYTMDAFMLGMG 215
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Match: Tardbp (TAR DNA binding protein [Source:MGI Symbol;Acc:MGI:2387629])

HSP 1 Score: 226.098 bits (575), Expect = 7.886e-69
Identity = 118/257 (45.91%), Postives = 163/257 (63.42%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867
            DGT+LLST+T QFP A GL+Y++  +   RGVR      + P  GW    Y     KDNKRK D+   + A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RF +Y+ QV  ++++H ID RWC+ K+P SK    +P+      K+ VGR +E +TA+ L+ FF QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N N Q   +GR
Sbjct:   23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQ---SPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Match: Tardbp (TAR DNA binding protein [Source:MGI Symbol;Acc:MGI:2387629])

HSP 1 Score: 226.098 bits (575), Expect = 9.411e-69
Identity = 118/257 (45.91%), Postives = 163/257 (63.42%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867
            DGT+LLST+T QFP A GL+Y++  +   RGVR      + P  GW    Y     KDNKRK D+   + A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RF +Y+ QV  ++++H ID RWC+ K+P SK    +P+      K+ VGR +E +TA+ L+ FF QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N N Q   +GR
Sbjct:   23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQ---SPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Match: Tardbp (TAR DNA binding protein [Source:MGI Symbol;Acc:MGI:2387629])

HSP 1 Score: 226.098 bits (575), Expect = 9.411e-69
Identity = 118/257 (45.91%), Postives = 163/257 (63.42%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867
            DGT+LLST+T QFP A GL+Y++  +   RGVR      + P  GW    Y     KDNKRK D+   + A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RF +Y+ QV  ++++H ID RWC+ K+P SK    +P+      K+ VGR +E +TA+ L+ FF QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N N Q   +GR
Sbjct:   23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQ---SPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Match: Tardbp (TAR DNA binding protein [Source:MGI Symbol;Acc:MGI:2387629])

HSP 1 Score: 226.098 bits (575), Expect = 9.411e-69
Identity = 118/257 (45.91%), Postives = 163/257 (63.42%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867
            DGT+LLST+T QFP A GL+Y++  +   RGVR      + P  GW    Y     KDNKRK D+   + A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RF +Y+ QV  ++++H ID RWC+ K+P SK    +P+      K+ VGR +E +TA+ L+ FF QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N N Q   +GR
Sbjct:   23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQ---SPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Match: Tardbp (TAR DNA binding protein [Source:MGI Symbol;Acc:MGI:2387629])

HSP 1 Score: 226.098 bits (575), Expect = 9.411e-69
Identity = 118/257 (45.91%), Postives = 163/257 (63.42%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHN-QNNMNGR 867
            DGT+LLST+T QFP A GL+Y++  +   RGVR      + P  GW    Y     KDNKRK D+   + A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RF +Y+ QV  ++++H ID RWC+ K+P SK    +P+      K+ VGR +E +TA+ L+ FF QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N N Q   +GR
Sbjct:   23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQ---SPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIK-GISVHISNAEPKHNSNRQLERSGR 275
[Close]
BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Match: sp|Q28F51|TADBP_XENTR (TAR DNA-binding protein 43 OS=Xenopus tropicalis OX=8364 GN=tardbp PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.338e-72
Identity = 129/283 (45.58%), Postives = 181/283 (63.96%), Query Frame = 1 
Query:   31 IKMKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPG 879
            ++M+Y+ V E+E E  +E+P E+DGT+LLST+T QFP A GL+Y++      RGVR      + P  GW    Y     KDNKRK D+   + A   K    K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RFADY+ QV  ++++H ID RWC+ K+P SKS    P+      K+ VGR +E ++A+ LR FF+QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V +S A PK N+N+    G   PG
Sbjct:    1 MEMEYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILHAPENGWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAVTKTSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCKLPNSKS----PDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIK-GVSVHVSTAEPKHNNNRQLERGGRFPG 278
[Close]
BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Match: sp|Q13148|TADBP_HUMAN (TAR DNA-binding protein 43 OS=Homo sapiens OX=9606 GN=TARDBP PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 2.148e-69
Identity = 117/250 (46.80%), Postives = 159/250 (63.60%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQ 849
            DGT+LLST+T QFP A GL+Y++  +   RGVR      + P  GW    Y     KDNKRK D+   + A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RF +Y+ QV  ++++H ID RWC+ K+P SK  Q  P  +    K+ VGR +E +T D LR FF+QYG V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N N+
Sbjct:   23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRSR---KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIK-GISVHISNAEPKHNSNR 268
[Close]
BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Match: sp|Q5R5W2|TADBP_PONAB (TAR DNA-binding protein 43 OS=Pongo abelii OX=9601 GN=TARDBP PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 2.217e-69
Identity = 117/250 (46.80%), Postives = 159/250 (63.60%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQ 849
            DGT+LLST+T QFP A GL+Y++  +   RGVR      + P  GW    Y     KDNKRK D+   + A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RF +Y+ QV  ++++H ID RWC+ K+P SK  Q  P  +    K+ VGR +E +T D LR FF+QYG V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N N+
Sbjct:   23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRSR---KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIK-GISVHISNAEPKHNSNR 268
[Close]
BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Match: sp|Q5ZLN5|TADBP_CHICK (TAR DNA-binding protein 43 OS=Gallus gallus OX=9031 GN=TARDBP PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.167e-68
Identity = 116/250 (46.40%), Postives = 159/250 (63.60%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQ 849
            DGT+LLST+T QFP A GL+Y++  +    GVR      + P  GW    Y     KDNKRK D+   + A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RF DY+ QV  ++++H ID RWC+ K+P SK    +P+      K+ VGR +E +TAD L+ FF QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N N+
Sbjct:   23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMWGVRLVEGILHAPEAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPNSKQ---SPDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIK-GISVHISNAEPKHNSNR 268
[Close]
BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Match: sp|Q921F2|TADBP_MOUSE (TAR DNA-binding protein 43 OS=Mus musculus OX=10090 GN=Tardbp PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.071e-67
Identity = 115/250 (46.00%), Postives = 160/250 (64.00%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQ 849
            DGT+LLST+T QFP A GL+Y++  +   RGVR      + P  GW    Y     KDNKRK D+   + A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVK++  T  SKG+ F+RF +Y+ QV  ++++H ID RWC+ K+P SK    +P+      K+ VGR +E +TA+ L+ FF QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N N+
Sbjct:   23 DGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSK---QSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIK-GISVHISNAEPKHNSNR 268
[Close]
BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Match: A0A183SYD1 (TAR DNA-binding protein 43 OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS9229 PE=4 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 2.141e-93
Identity = 165/367 (44.96%), Postives = 230/367 (62.67%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQY--TLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK-----SNHNQNNMN----GRAQPGYGHWNTYD-----VFSDGRGGMNRNRSCQNKLMPNSNQ-----MPHEWSNYLXXXXXXXXXXXXXXXFTTP----DMSQNTNAMAALNIINNPSVV 1125
            D TLLLSTLT QFP+ATGLKY+ + TG  RG+R ++DR +PPP+GW+   Y  V+    ++  DDE+    LAK+K++EGKKCTDLI+LN+PWR D+ ALK YFSKFG+V MVQVKR+P+T +S+GY FIRF DY AQ MCLAE+H ID+RWC+V+IP SK   +  +  EV  K+H+G+L+E +TADVLR  F+++G++  +++PRPFRSFAF++FED   A SLLG++  +N    +T+ +A PK      + NQN M+    G   P    WN +            G +   R+  N + P  NQ          S Y +      +    QR   +P        ++ A+A LNI++NPSVV
Sbjct:   24 DNTLLLSTLTAQFPRATGLKYQFECTGCIRGIRLSNDRLFPPPDGWQNRVYRIVVANTKRKGDDDEEQGSNLAKSKRLEGKKCTDLIILNLPWRIDEPALKNYFSKFGEVAMVQVKRDPNTNQSRGYGFIRFRDYAAQAMCLAERHFIDSRWCDVRIPVSK---IEGDRQEVNRKLHIGQLTEDITADVLREHFSRFGEITDVFVPRPFRSFAFITFEDADVAASLLGQDQVVN-GVTLTVGSAVPKMPAFPRHSNQNMMHNMYQGNMGPQQLPWNPWQPQFGGYGYGDGGHVAPVRTRYNAMAPGVNQAAMSTAAALASQYTRAHQNQNTCFARQRSSMSPVPTYPGGGDSAALATLNILSNPSVV 386
[Close]
BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Match: A0A0X3NQN6 (TAR DNA-binding protein 43 OS=Schistocephalus solidus OX=70667 GN=TADBP PE=4 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 2.178e-93
Identity = 165/367 (44.96%), Postives = 230/367 (62.67%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQY--TLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK-----SNHNQNNMN----GRAQPGYGHWNTYD-----VFSDGRGGMNRNRSCQNKLMPNSNQ-----MPHEWSNYLXXXXXXXXXXXXXXXFTTP----DMSQNTNAMAALNIINNPSVV 1125
            D TLLLSTLT QFP+ATGLKY+ + TG  RG+R ++DR +PPP+GW+   Y  V+    ++  DDE+    LAK+K++EGKKCTDLI+LN+PWR D+ ALK YFSKFG+V MVQVKR+P+T +S+GY FIRF DY AQ MCLAE+H ID+RWC+V+IP SK   +  +  EV  K+H+G+L+E +TADVLR  F+++G++  +++PRPFRSFAF++FED   A SLLG++  +N    +T+ +A PK      + NQN M+    G   P    WN +            G +   R+  N + P  NQ          S Y +      +    QR   +P        ++ A+A LNI++NPSVV
Sbjct:   27 DNTLLLSTLTAQFPRATGLKYQFECTGCIRGIRLSNDRLFPPPDGWQNRVYRIVVANTKRKGDDDEEQGSNLAKSKRLEGKKCTDLIILNLPWRIDEPALKNYFSKFGEVAMVQVKRDPNTNQSRGYGFIRFRDYAAQAMCLAERHFIDSRWCDVRIPVSK---IEGDRQEVNRKLHIGQLTEDITADVLREHFSRFGEITDVFVPRPFRSFAFITFEDADVAASLLGQDQVVN-GVTLTVGSAVPKMPAFPRHSNQNMMHNMYQGNMGPQQLPWNPWQPQFGGYGYGDGGHVAPVRTRYNAMAPGVNQAAMSTAAALASQYTRAHQNQNTCFARQRSSMSPVPTYPGGGDSAALATLNILSNPSVV 389
[Close]
BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Match: A0A068Y5Q1 (Tar DNA binding protein OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000472500 PE=4 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 6.519e-91
Identity = 136/245 (55.51%), Postives = 183/245 (74.69%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK 834
            D TLLLSTL  QFP+ATGLKY S ++G  RGVR++  R YPPP+GW+   Y  V+    ++  D+E    AKTK+++GK+CTDLIVLN+PWR ++ ALK YFS+FGDVVM QVKR+P+T +S+GY FIRF DYDAQVMCLAE+H ID+RWC+V+IP SK+     +  EV  K+H+G+L+E +TAD+LR  F+Q+G +  +++PRPFRSFAF++FED   A SLLG +  IN    +T+ +A PK
Sbjct:   26 DKTLLLSTLAAQFPRATGLKYAS-ESGCMRGVRYSDGRIYPPPDGWQNRVYKIVVSYAKRKVDDEEAGNFAKTKRLDGKRCTDLIVLNLPWRVEETALKNYFSRFGDVVMAQVKRDPNTNQSRGYGFIRFRDYDAQVMCLAERHFIDSRWCDVRIPISKT---EGDRQEVNRKLHIGQLTEDITADMLRDHFSQFGHITDVFVPRPFRSFAFITFEDPGVAASLLGEDQVINGQ-TLTVGSAVPK 265
[Close]
BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Match: A0A068WI34 (Tar DNA binding protein OS=Echinococcus granulosus OX=6210 GN=EgrG_000472500 PE=4 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 6.519e-91
Identity = 136/245 (55.51%), Postives = 183/245 (74.69%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK 834
            D TLLLSTL  QFP+ATGLKY S ++G  RGVR++  R YPPP+GW+   Y  V+    ++  D+E    AKTK+++GK+CTDLIVLN+PWR ++ ALK YFS+FGDVVM QVKR+P+T +S+GY FIRF DYDAQVMCLAE+H ID+RWC+V+IP SK+     +  EV  K+H+G+L+E +TAD+LR  F+Q+G +  +++PRPFRSFAF++FED   A SLLG +  IN    +T+ +A PK
Sbjct:   26 DKTLLLSTLAAQFPRATGLKYAS-ESGCMRGVRYSDGRIYPPPDGWQNRVYKIVVSYAKRKVDDEEAGNFAKTKRLDGKRCTDLIVLNLPWRVEETALKNYFSRFGDVVMAQVKRDPNTNQSRGYGFIRFRDYDAQVMCLAERHFIDSRWCDVRIPISKT---EGDRQEVNRKLHIGQLTEDITADMLRDHFSQFGHITDVFVPRPFRSFAFITFEDPGVAASLLGEDQVINGQ-TLTVGSAVPK 265
[Close]
BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Match: A0A0R3W3I1 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS4477 PE=4 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 1.356e-90
Identity = 136/245 (55.51%), Postives = 183/245 (74.69%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK 834
            D TLLLSTL  QFP+ATGLKY S ++G  RGVR++  R YPPP+GW+   Y  V+    ++  D+E    AKTK+++GK+CTDLIVLN+PWR ++ ALK YFS+FGDVVM QVKR+P+T +S+GY FIRF DYDAQVMCLAE+H ID+RWC+V+IP SK+     +  EV  K+H+G+L+E +TAD+LR  F+Q+G +  +++PRPFRSFAF++FED   A SLLG +  IN    +T+ +A PK
Sbjct:   45 DKTLLLSTLAAQFPRATGLKYTS-ESGCMRGVRYSDGRIYPPPDGWQNRVYKIVVSYAKRKVDDEEAGNFAKTKRLDGKRCTDLIVLNLPWRVEETALKNYFSRFGDVVMAQVKRDPNTNQSRGYGFIRFRDYDAQVMCLAERHFIDSRWCDVRIPISKT---EGDRQEVNRKLHIGQLTEDITADMLRDHFSQFGHITDVFVPRPFRSFAFITFEDPGVAASLLGEDQVINGH-TLTVGSAVPK 284
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Match: tardbpl (TAR DNA binding protein [Source:NCBI gene;Acc:103025275])

HSP 1 Score: 233.802 bits (595), Expect = 1.787e-70
Identity = 118/256 (46.09%), Postives = 160/256 (62.50%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSV--QMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMN 861
            DGT+LLST+  QFP A GL+Y+S  +   RGVR      + P   W    Y     KDNKRK D+     A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVKR+  T  SKG+ F+RF DY+ Q+  ++++H ID RWC+ K+P SK    Q  P+      K+ VGR +E +TAD LR FF QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N+++  M+
Sbjct:   24 DGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAPDADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTSEQDLKDYFSTFGEVIMVQVKRDVKTGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADDLRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGTS-VHISNAEPKHNNSRQMMD 278
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Match: tardbpl (TAR DNA binding protein [Source:NCBI gene;Acc:103025275])

HSP 1 Score: 230.335 bits (586), Expect = 2.163e-70
Identity = 121/261 (46.36%), Postives = 161/261 (61.69%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSV--QMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSN--HNQNNMNGRA 870
            DGT+LLST+  QFP A GL+Y+S  +   RGVR      + P   W    Y     KDNKRK D+     A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVKR+  T  SKG+ F+RF DY+ Q+  ++++H ID RWC+ K+P SK    Q  P+      K+ VGR +E +TAD LR FF QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK N  H  +N  GR+
Sbjct:   24 DGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAPDADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTSEQDLKDYFSTFGEVIMVQVKRDVKTGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADDLRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGTS-VHISNAEPKHNNIHLFSNFPGRS 283
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Match: tardbp (TAR DNA-binding protein 43-like [Source:NCBI gene;Acc:103044966])

HSP 1 Score: 226.098 bits (575), Expect = 1.705e-67
Identity = 117/259 (45.17%), Postives = 164/259 (63.32%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFK-----DNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMN 861
            DGT+LLST++ QFP A GL+Y+S  +   RGVR      + P  GW    Y     K     DNKRK D+ + + AK K+ +  K +DLIVL +PW+T ++ LK YFS FG+V+MVQVKR+  T  SKG+ F+RF +++ Q   +A++H ID RWC+ K+P SK     P+      K+ VGR +E +TAD LR FF QYG+V  ++IP+PFR+FAFV+F D+  A SL G +L I     V IS A PK N++++ M+
Sbjct:   24 DGTVLLSTVSAQFPGACGLRYRSPISQCMRGVRLVEGVLHAPENGWGNLVYVVNYPKEPALPDNKRKMDEIEASSAKMKRGD-HKTSDLIVLGLPWKTSEQDLKDYFSTFGEVIMVQVKRDVKTGNSKGFGFVRFGEWETQSKVIAQRHMIDGRWCDCKLPNSKQ---GPDEPMRSRKVFVGRCTEDMTADDLRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVASSLCGEDL-IVKGVSVHISNAEPKHNNSRHMMD 277
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Match: msi2b (RNA-binding protein Musashi homolog 2 [Source:NCBI gene;Acc:103023867])

HSP 1 Score: 91.6633 bits (226), Expect = 6.538e-20
Identity = 58/201 (28.86%), Postives = 97/201 (48.26%), Query Frame = 1 
Query:  340 CTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAE-QHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRG 924
            C+ + +  + W+T  ++L+ YFSKFG++    V R+P T +S+G+ F+ FAD  +    L +  H +D++  + K+ + +  Q  P+      KI VG LS     + ++ +F Q+GKVE   +         R F FV+FE+E   + +        ++ +V    A PK         GRA+   G   T D F  G G
Sbjct:   16 CSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLGQPHHELDSKTIDPKVAFPRRAQ--PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR---GLPYTMDAFMLGMG 211
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Match: msi2b (RNA-binding protein Musashi homolog 2 [Source:NCBI gene;Acc:103023867])

HSP 1 Score: 91.2781 bits (225), Expect = 9.913e-20
Identity = 58/201 (28.86%), Postives = 97/201 (48.26%), Query Frame = 1 
Query:  340 CTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAE-QHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRG 924
            C+ + +  + W+T  ++L+ YFSKFG++    V R+P T +S+G+ F+ FAD  +    L +  H +D++  + K+ + +  Q  P+      KI VG LS     + ++ +F Q+GKVE   +         R F FV+FE+E   + +        ++ +V    A PK         GRA+   G   T D F  G G
Sbjct:   16 CSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLGQPHHELDSKTIDPKVAFPRRAQ--PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR---GLPYTMDAFMLGMG 211
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009806.1 (pep scaffold:Pmarinus_7.0:GL479354:9188:12030:-1 gene:ENSPMAG00000008859.1 transcript:ENSPMAT00000009806.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 228.794 bits (582), Expect = 4.372e-70
Identity = 115/254 (45.28%), Postives = 159/254 (62.60%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTY-------SCVLFKDNKRKSDDEQYTLAKTKKM--EGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK 834
            DGTLL+S +  QFP A GL+Y+  D   +RGVR      +PP  GW +YT+        CVL  +NKRK   E+  +A   KM     + +DL+VL +PW T ++ LK YFS FG VV+ Q+K +P T KSKGY F+RFAD+++Q+  +  +H I  RWC+ K+P SK    +P+    RN+I VGR  E +T + LRSFF Q+G V  +YIP+PFRSF FV+F +E  AQSL G+++ I     V I++A PK
Sbjct:   23 DGTLLVSNVAAQFPGAVGLRYRPPDAQSFRGVRLVDGVLHPPENGWASYTFYVNFPKDPCVLGLENKRKM--EEVDMASASKMLRSEPRVSDLVVLGLPWTTTEDELKDYFSAFGSVVLSQIKTDPATGKSKGYGFVRFADHESQLKAMGMRHMIGGRWCDAKLPQSKMYPTDPD----RNRIFVGRCPEDITPEDLRSFFGQFGDVTDVYIPKPFRSFGFVTFANEHVAQSLCGQDV-IVKGASVHIASAEPK 269
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Sea Lamprey
Match: TARDBP (TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571])

HSP 1 Score: 180.259 bits (456), Expect = 2.626e-53
Identity = 90/195 (46.15%), Postives = 130/195 (66.67%), Query Frame = 1 
Query:  271 DNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNN 855
            DNKRK D+ + +     K   +K +DLIVL +PW+  ++ ++ YFS FG+V+M QVKR+  T  SKG+ F+RF DY+ Q+  LA++H ID RWC+ K+P SK  Q+  +A   R KI VGR +E +TAD LR FF+Q+G+V  ++IP+PFR+FAFV+F D+  AQ L G +L I     V IS+A PK  + + +
Sbjct:    1 DNKRKMDEAEMSNVAKVKRSVQKTSDLIVLGLPWKASEQDIRDYFSTFGEVLMAQVKRDIKTGNSKGFGFVRFRDYETQLKVLAQRHMIDGRWCDCKLPNSKEQQVG-DAFRSR-KIFVGRCTEDITADDLRQFFSQFGEVTDVFIPKPFRAFAFVTFSDDQIAQGLCGEDLIIK-GTSVHISSAEPKFGYARGD 192
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007723.1 (pep scaffold:Pmarinus_7.0:GL496487:1152:2091:-1 gene:ENSPMAG00000006977.1 transcript:ENSPMAT00000007723.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 102.449 bits (254), Expect = 1.669e-26
Identity = 45/103 (43.69%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:  271 DNKRKSDD-EQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSK 576
            DNKRK D+ + + +AK K+   +K +DLIVL +PW+ +++ L+ YF++ GDV+MVQVKR+  +  SKG+ F+RF+++++Q+  ++++H I  RWC+VK+P +K
Sbjct:    1 DNKRKMDESDAWNVAKIKR-SVQKTSDLIVLGLPWKCNEQDLRDYFTEVGDVLMVQVKRDAKSGTSKGFGFVRFSEFESQLKAISQRHLIGGRWCDVKLPNTK 102
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004893.1 (pep scaffold:Pmarinus_7.0:GL479484:4:2056:-1 gene:ENSPMAG00000004449.1 transcript:ENSPMAT00000004893.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 76.2554 bits (186), Expect = 6.718e-16
Identity = 58/213 (27.23%), Postives = 95/213 (44.60%), Query Frame = 1 
Query:  319 KKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADY-DAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNRN 939
            K  E ++   L V  + + T +E L+ YF ++G +    V ++  + +S+G+ F+ F+   +      A  H ID R  E K   S+   M P A+    KI VG + +    + LR +F +YG++E + +         R FAFV+F D      ++ ++    +     I  A PK    QN         YG   +Y     GRGG NR+
Sbjct:    3 KDREPEQFRKLFVGGLSFETTEEGLRQYFEQWGSLTDCVVMKDTQSKRSRGFGFVTFSSMSEVDAAMSARPHKIDGRMVEPKRAVSREDSMRPGAHLSVKKIFVGGIKDDTDEEHLRDYFEKYGRIEIVEVMTERESGKKRGFAFVTFNDHDPVDKIVVQKYHTINGHNCEIRKALPKQE-LQN---------YGRGKSY---YSGRGGYNRD 202
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Sea Lamprey
Match: HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0 [Source:HGNC Symbol;Acc:HGNC:5030])

HSP 1 Score: 73.1738 bits (178), Expect = 3.552e-14
Identity = 50/198 (25.25%), Postives = 90/198 (45.45%), Query Frame = 1 
Query:  349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRF-ADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPR-----PFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRG 924
            L +  + + T +E+++ +F ++G +    V R+P T +S+G+ F+ + +  +         H +D R  E K   S+   + P A+    KI VG + +    D LR +F++YG VES+ +         R F FV+F D      ++ ++    +     +  A   S    N++ G  + G        VFS GRG
Sbjct:   35 LFIGGLSFETTEESMQKHFEQWGTLTDCVVMRDPHTKRSRGFGFVTYMSAEEVDAAMEVRPHHLDGRVVEAKRAISREDSLKPGAHLKVKKIFVGGIKDNTDEDHLRDYFSEYGMVESVDVMEDRQSGKKRGFGFVTFSDHDAVDKVVVQKYHTINGHKAEVRKAL--SKQEMNSLGGDPRQG-----ENSVFSKGRG 225

HSP 2 Score: 48.9062 bits (115), Expect = 2.287e-6
Identity = 29/93 (31.18%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:  337 KCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDA-QVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVR 612
            K   + V  I   TD++ L+ YFS++G V  V V  +  + K +G+ F+ F+D+DA   + + + H I+    EV+   SK  +MN    + R
Sbjct:  122 KVKKIFVGGIKDNTDEDHLRDYFSEYGMVESVDVMEDRQSGKKRGFGFVTFSDHDAVDKVVVQKYHTINGHKAEVRKALSKQ-EMNSLGGDPR 213
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Yeast
Match: HRP1 (Subunit of cleavage factor I; cleavage factor I is a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences; required for genome stability [Source:SGD;Acc:S000005483])

HSP 1 Score: 60.077 bits (144), Expect = 5.754e-10
Identity = 37/172 (21.51%), Postives = 73/172 (42.44%), Query Frame = 1 
Query:  334 KKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK 834
            K+   + +  + W T ++ L+ YF K+G V  +++ ++P T +S+G+ F+ F    +    +  QH +D +  + K    +  Q      +   KI VG +   V       FF+Q+G +    +         R F FV+++       +   +     D  + I  A P+
Sbjct:  156 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQ------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 321
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Yeast
Match: NSR1 (Nucleolar protein that binds nuclear localization sequences; required for pre-rRNA processing and ribosome biogenesis; binds to single stranded telomeric DNA and mRNA; methylated by Hmt1p; interaction with Top1p and nucleolar localization are negatively regulated by polyphosphorylation [Source:SGD;Acc:S000003391])

HSP 1 Score: 57.7658 bits (138), Expect = 2.121e-9
Identity = 50/194 (25.77%), Postives = 88/194 (45.36%), Query Frame = 1 
Query:  313 KTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFAD--YDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEA-------NEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIP------RPFRSFAFVSFED-ESTAQSLLGRELKINDDCVVTISAASPKSNHN 846
            K K  E ++   + V  + W  DDE LK  F   G V+  +V  E  T +S+GY ++ F +  Y  + +   +   ID R     +  SK    N  A       +E  + + +G LS     D +   F ++G+V S+ IP      +P + F +V F + E   ++L   + +  D+  V +  +SP+ N++
Sbjct:  158 KQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQP-KGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNND 350
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Yeast
Match: MRD1 (Essential conserved small ribosomal subunit (40s) synthesis factor; component of the 90S preribosome; required for production of 18S rRNA and small ribosomal subunit; contains five consensus RNA-binding domains and binds to the pre-rRNA at two sites within the 18S region [Source:SGD;Acc:S000006316])

HSP 1 Score: 54.299 bits (129), Expect = 4.541e-8
Identity = 49/171 (28.65%), Postives = 79/171 (46.20%), Query Frame = 1 
Query:  349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPD------TLKSKGYAFIRFADYDAQ--VMCLAEQHCIDNRWCEVKIPYSKSVQ---MNPEANEVRNKIHVGRLS-EAVTADVLRSFFNQYGKVESIYIPRPF----RSFAFVSF---------EDESTAQSLLGREL 786
            + + N+ + T ++ L   F  F   V+ QVK +PD      TL S G+ F+ F   +    V+   +   ID    ++K+ + ++ Q      ++N+   KI V  L  EA   DV    FN +G+++S+ +P+ F    R FAFV F          D+     LLGR L
Sbjct:  665 IFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTL-SMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGKIIVKNLPFEATRKDVF-ELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGVHLLGRRL 833
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Yeast
Match: SNP1 (Component of U1 snRNP required for mRNA splicing via spliceosome; substrate of the arginine methyltransferase Hmt1p; may interact with poly(A) polymerase to regulate polyadenylation; homolog of human U1 70K protein; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000001323])

HSP 1 Score: 49.6766 bits (117), Expect = 5.883e-7
Identity = 27/84 (32.14%), Postives = 45/84 (53.57%), Query Frame = 1 
Query:  349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHC-----IDNRWCEVKIPYSKSVQ 585
            + +  +P+  D+  L+ YF KFG++  +++ ++  T KSKGYAFI F D  +  M   E        I +R C V I   ++V+
Sbjct:  109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEIGVHRGIQIKDRICIVDIERGRTVK 192
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Nematostella
Match: EDO44940 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RU25])

HSP 1 Score: 173.711 bits (439), Expect = 1.390e-49
Identity = 97/255 (38.04%), Postives = 143/255 (56.08%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPE-GWETYTYSCVLFK--DNKRKSDDEQYTLAK-----TKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSN 840
            DGTLLLS +  QFP A GL+Y++ +T  +RGVR   D  YPP E GW    +  V  K  D+  K   E+  + K       K+EG    DLIVL +P+ T +  +K YF++FG++   +VK +P+T +S+G+ F+RF   +     L+  H I  R CEV++P  K      E   V  K+ VGRL E+ T   L  +F Q+G+V  +YIP+PFR F FV+F     A+ +L +  +I+   ++ I+ A PKS 
Sbjct:   26 DGTLLLSNVNGQFPGACGLRYRNPETQAFRGVRLVEDVLYPPFEDGWGDTLFLVVPSKAADSASKRKIEESPIGKEPETKITKVEGVDVGDLIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLSTSHRIQGRLCEVRLPRPK------EELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHFGFVTFASGELAKKVLSQNHRIS-GSLLNITFAEPKST 273
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Nematostella
Match: EDO39879 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8S5])

HSP 1 Score: 69.3218 bits (168), Expect = 1.138e-13
Identity = 43/168 (25.60%), Postives = 83/168 (49.40%), Query Frame = 1 
Query:  349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDA-QVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK 834
            + +  + W+T  E L+ +F KFG++    V R+P T +S+G+ F+ F D  A  V+  +    +D +  + K+   K  +   +      KI +G LS   + + ++ +F+Q+GK+    +      +  R F FV+FE E++A      +  + ++  V +  A PK
Sbjct:    2 MFIGGLSWQTTAEGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGKKIDPKLAVPK--RAPAKMVTTTKKIFIGGLSTNTSEEDMKKYFSQFGKITETMLMFDKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKAQPK 167
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Nematostella
Match: EDO38417 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SCX6])

HSP 1 Score: 64.3142 bits (155), Expect = 2.561e-11
Identity = 54/185 (29.19%), Postives = 87/185 (47.03%), Query Frame = 1 
Query:  313 KTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRF---ADYDAQVMCLAEQHCIDNRWCEVK--IPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQ-YGKVESI-YIPRPF----RSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPK 834
            KT+  +      L V  + + T  E+LK YFSK+G++V V +K +  T + +G+AF++F   ++ DA V+   + H +D R  + K   P  K   +         KI VG L    + + +R +F + Y  V+ I YI        R F FVSF+ E T   +   +    +   V +  A PK
Sbjct:   19 KTRMTKDDDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEADA-VLNQVDPHVLDGRTIDPKPAAPIGKPPHLR------VKKIFVGGLKPETSDEKIREYFGKAYAPVKEIEYITEHSSNRRRGFCFVSFDSEDTVDKICETQFHNIEGNKVEVKRALPK 196
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Nematostella
Match: EDO49349 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RG33])

HSP 1 Score: 60.4622 bits (145), Expect = 9.315e-11
Identity = 43/155 (27.74%), Postives = 76/155 (49.03%), Query Frame = 1 
Query:  349 LIVLNIPWRTDDEALKMYFSKFGDVV-MVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQ-HCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQY----GKVESIYI--------PRPFRSFAFVSFEDESTAQSL 771
            + +  + W T +E LK YFS++G +V  V +KR+    +S+G+ F+ +   D+    L ++ H +D+R  E K    +     PEA     KI VG L+     + ++ +FN      G  E I +        P+  R FAFV+F+++   + +
Sbjct:    2 IFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDG---RSRGFGFVTYESSDSVNEVLKKKDHVLDDREIEPKRSVPRDESGAPEAMSKTRKIFVGGLASTTVEEDIKEYFNSLCRKNGMGEVIDVDLKRDRDNPKRIRGFAFVTFDNDEIVEKV 153
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Nematostella
Match: EDO33389 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSE1])

HSP 1 Score: 58.151 bits (139), Expect = 5.388e-10
Identity = 39/146 (26.71%), Postives = 66/146 (45.21%), Query Frame = 1 
Query:  349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQ-HCIDNRWCEVKIPYSKSVQMNPEANEVRN--KIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTA 762
            + V  +   TD   L+ YF K+G+V    +  +P T +S+ + FI F D       + ++ H +D +  + K    +     P      N  KI VG L+ + +   L  +F  YGKV S+ +      +  R F FV+FE + + 
Sbjct:    3 IFVGGLAISTDSAGLQGYFEKYGEVTDCVLMTDPVTKRSRCFGFITFRDPSVVQNVMDDKPHQLDGKMIDPKPAVPRGPGQGPPQGNQNNEFKIFVGGLAHSTSKQDLEDYFTAYGKVVSVNLMVDPQTQKMRGFGFVTFESKDSV 148
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Match: tardbp (TAR DNA-binding protein 43-like [Source:NCBI gene;Acc:101167445])

HSP 1 Score: 231.491 bits (589), Expect = 1.634e-69
Identity = 118/262 (45.04%), Postives = 160/262 (61.07%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYG 885
            DGT+LLST+  QFP A GL+++S  +   RGVR      + P  GW    Y     KDNKRK D+   + A   K    K +DLIVL +PW+T ++ LK YFS FG+V+MVQVKR+  T  SKG+ F+RF +Y+AQ   ++++H ID RWC+ K+P SK     P+      K+ VGR +E +T D LR FF QYG+V  ++IP+PFR+FAFV+F D+  AQSL G +L I     V IS A PK  + Q +   R   G+G
Sbjct:   24 DGTVLLSTVAAQFPGACGLRFRSPVSQCMRGVRLVEGVLHAPETGWGNVVYVVNYPKDNKRKMDEIDASSAVKMKRGDMKTSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFTEYEAQEKVISQRHMIDGRWCDCKLPNSKQ---GPDEPLRSRKVFVGRCTEDMTTDDLRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIK-GVSVHISNAEPKHGNRQYDRTARFGNGFG 281
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Match: tardbpl (TAR DNA binding protein [Source:NCBI gene;Acc:101173545])

HSP 1 Score: 220.705 bits (561), Expect = 1.040e-66
Identity = 116/260 (44.62%), Postives = 159/260 (61.15%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPG 879
            DGT+LLS++  QFP A GL+Y++ ++   RGVR      + P   W    Y     KDNKRK ++     A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVKR+  T  SKG+ F+RFADY+ Q   + ++H ID RWC+ K+P SK   + P+      KI VGR +E +T D LR +F QYG+V  ++IP+PFR+FAFV+F D+  AQ+L G +L I     V IS A PK  HN  +   R  PG
Sbjct:   24 DGTVLLSSVAAQFPGACGLRYRNPESQCMRGVRLVEGVLHAPENEWGNLVYVVNYPKDNKRKMEEIDAASAVKVKRGFQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFADYETQTKVITQRHMIDGRWCDCKLPNSK---VCPDEPMRSRKIFVGRCTEDMTPDELRQYFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQALCGEDLIIK-GVSVHISNAEPK--HNNIHQLFRNFPG 277
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Match: tardbpl (TAR DNA binding protein [Source:NCBI gene;Acc:101173545])

HSP 1 Score: 201.06 bits (510), Expect = 7.062e-60
Identity = 99/218 (45.41%), Postives = 139/218 (63.76%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDE 753
            DGT+LLS++  QFP A GL+Y++ ++   RGVR      + P   W    Y     KDNKRK ++     A   K   +K +DLIVL +PW+T ++ LK YFS FG+V+MVQVKR+  T  SKG+ F+RFADY+ Q   + ++H ID RWC+ K+P SK   + P+      KI VGR +E +T D LR +F QYG+V  ++IP+PFR+FAFV+F D+
Sbjct:   24 DGTVLLSSVAAQFPGACGLRYRNPESQCMRGVRLVEGVLHAPENEWGNLVYVVNYPKDNKRKMEEIDAASAVKVKRGFQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFADYETQTKVITQRHMIDGRWCDCKLPNSK---VCPDEPMRSRKIFVGRCTEDMTPDELRQYFMQYGEVTDVFIPKPFRAFAFVTFADD 238
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Match: msi2a (musashi RNA binding protein 2 [Source:NCBI gene;Acc:101163923])

HSP 1 Score: 86.6557 bits (213), Expect = 2.841e-18
Identity = 56/198 (28.28%), Postives = 95/198 (47.98%), Query Frame = 1 
Query:  349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHC-IDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRG 924
            + +  + W+T  ++L+ YFSKFG++    V R+P T +S+G+ F+ F D  +    LA+QH  +D++  + K+ + +  Q  P+      KI VG LS     + ++ +F Q+GKV+   +         R F F++FE E   + +        ++ +V    A PK         GRA+   G   T D F  G G
Sbjct:   23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQQHHELDSKTIDPKVAFPRRAQ--PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR---GLPYTMDAFMLGMG 215
[Close]
BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Match: msi2a (musashi RNA binding protein 2 [Source:NCBI gene;Acc:101163923])

HSP 1 Score: 86.6557 bits (213), Expect = 3.809e-18
Identity = 56/198 (28.28%), Postives = 95/198 (47.98%), Query Frame = 1 
Query:  349 LIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHC-IDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYI-----PRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRG 924
            + +  + W+T  ++L+ YFSKFG++    V R+P T +S+G+ F+ F D  +    LA+QH  +D++  + K+ + +  Q  P+      KI VG LS     + ++ +F Q+GKV+   +         R F F++FE E   + +        ++ +V    A PK         GRA+   G   T D F  G G
Sbjct:   23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQQHHELDSKTIDPKVAFPRRAQ--PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR---GLPYTMDAFMLGMG 215
[Close]
BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Match: SMESG000012144.1 (SMESG000012144.1)

HSP 1 Score: 759.599 bits (1960), Expect = 0.000e+0
Identity = 434/434 (100.00%), Postives = 434/434 (100.00%), Query Frame = 1 
Query:   37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLXXXXXXXXXXXXXXXFTTPDMSQNTNAMAALNIINNPSVVXXXXXXXXXXXQQGDVTSGHLMPTVSSXXXXXXXXXKPDVGXXXXXXXXXXXXXXXXFLYSHIPNQNSWGY 1338
            MKYVIVCEEEEEPTIELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLQQQHMHASQAQAQRQFTTPDMSQNTNAMAALNIINNPSVVAAIMSAAAARAQQGDVTSGHLMPTVSSGLGGGGYMGKPDVGQNQQQSQQPQPQPQQQFLYSHIPNQNSWGY
Sbjct:    1 MKYVIVCEEEEEPTIELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLQQQHMHASQAQAQRQFTTPDMSQNTNAMAALNIINNPSVVAAIMSAAAARAQQGDVTSGHLMPTVSSGLGGGGYMGKPDVGQNQQQSQQPQPQPQQQFLYSHIPNQNSWGY 434
[Close]
BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Match: SMESG000012144.1 (SMESG000012144.1)

HSP 1 Score: 748.814 bits (1932), Expect = 0.000e+0
Identity = 431/434 (99.31%), Postives = 431/434 (99.31%), Query Frame = 1 
Query:   37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLXXXXXXXXXXXXXXXFTTPDMSQNTNAMAALNIINNPSVVXXXXXXXXXXXQQGDVTSGHLMPTVSSXXXXXXXXXKPDVGXXXXXXXXXXXXXXXXFLYSHIPNQNSWGY 1338
            MKYVIVCEEEEEPTIELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSK   MNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLQQQHMHASQAQAQRQFTTPDMSQNTNAMAALNIINNPSVVAAIMSAAAARAQQGDVTSGHLMPTVSSGLGGGGYMGKPDVGQNQQQSQQPQPQPQQQFLYSHIPNQNSWGY
Sbjct:    1 MKYVIVCEEEEEPTIELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSK---MNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLQQQHMHASQAQAQRQFTTPDMSQNTNAMAALNIINNPSVVAAIMSAAAARAQQGDVTSGHLMPTVSSGLGGGGYMGKPDVGQNQQQSQQPQPQPQQQFLYSHIPNQNSWGY 431
[Close]
BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Match: SMESG000012144.1 (SMESG000012144.1)

HSP 1 Score: 748.814 bits (1932), Expect = 0.000e+0
Identity = 431/434 (99.31%), Postives = 431/434 (99.31%), Query Frame = 1 
Query:   37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLXXXXXXXXXXXXXXXFTTPDMSQNTNAMAALNIINNPSVVXXXXXXXXXXXQQGDVTSGHLMPTVSSXXXXXXXXXKPDVGXXXXXXXXXXXXXXXXFLYSHIPNQNSWGY 1338
            MKYVIVCEEEEEPTIELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYD   DGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLQQQHMHASQAQAQRQFTTPDMSQNTNAMAALNIINNPSVVAAIMSAAAARAQQGDVTSGHLMPTVSSGLGGGGYMGKPDVGQNQQQSQQPQPQPQQQFLYSHIPNQNSWGY
Sbjct:    1 MKYVIVCEEEEEPTIELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYD---DGRGGMNRNRSCQNKLMPNSNQMPHEWSNYLQQQHMHASQAQAQRQFTTPDMSQNTNAMAALNIINNPSVVAAIMSAAAARAQQGDVTSGHLMPTVSSGLGGGGYMGKPDVGQNQQQSQQPQPQPQQQFLYSHIPNQNSWGY 431
[Close]
BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Match: SMESG000032661.1 (SMESG000032661.1)

HSP 1 Score: 280.411 bits (716), Expect = 8.534e-88
Identity = 145/273 (53.11%), Postives = 196/273 (71.79%), Query Frame = 1 
Query:   37 MKYVIVCXXXXXXXXXXXXXXDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFKDN-KRKSDDE-QYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQ 849
            M Y+ VCE EE  TIE+P+EED T+LL+TL   FP   GLKY++ +T  +R ++ +  +FY P EGWE   + CV  KDN KRK D+E +  L K+K++EG+KCTDLIVLN+ W+ D+E L+ YFSKFG++V+VQVK++ +T  SKGYAFIRFADY AQV+CLAE+H ID RWC VK+P+SK+     +  E+  KIHVG  SE ++ + LR  F QYG V  I+IP+PFR+FAFV+F+   TAQSL+G+ + IN    +TI +A PK N N+
Sbjct:    1 MYYIAVCEYEESETIEIPVEEDDTVLLTTLGGIFPNVCGLKYRAPETNTFRALKLSDGKFYKPVEGWEDLKFYCVFPKDNNKRKIDEEIEKPLQKSKRLEGRKCTDLIVLNLGWKVDEETLRKYFSKFGELVLVQVKKDRETSHSKGYAFIRFADYAAQVLCLAEKHLIDGRWCAVKVPFSKN---EADKQEISKKIHVGYASEEISMEDLRIAFEQYGYVTDIFIPKPFRNFAFVTFDSSDTAQSLIGQSININ-GITLTIGSAVPKINSNR 269
[Close]
BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Match: SMESG000032660.1 (SMESG000032660.1)

HSP 1 Score: 262.307 bits (669), Expect = 4.699e-81
Identity = 150/377 (39.79%), Postives = 211/377 (55.97%), Query Frame = 1 
Query:  100 DGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRFYPPPEGWETYTYSCVLFK--DNKRKSDDE-QYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGRELKINDDCVVTISAASPKSNHNQN------------NMNGRAQPGYGHWNTYD------------------VFSD-----GRGGMNRNRSCQNKLMPNSNQMPHEWSNYLXXXXXXXXXXXXXXXFTTPDMSQNTNAMAALNIINNP 1116
            D T+L +TL+ QFPK +GLKY+   +  +R ++ +  + + P EGW +    CV  K  DNKRK  +E +    KTK+++ +KCTDLIVLN+ W+ D+E L+ YFSKFGD+V+VQ+K++ +T  SKGYAF+RFADYD QV+CLAEQH ID RWC VK+P+SKS     +  E+  KIHV   +E +  + LR  F +YG V  I+IP+PFR+FAFV+FE    AQ L+GR + +     +TI +A PK   N+             N  G    G   W++Y+                  +  +         +  + S Q+ LM N    PH     L     +  Q+  Q      D+ QNT AMAALNI+NNP
Sbjct:   22 DDTILFTTLSGQFPKVSGLKYRFSGSLNFRAIKLSEGKLFKPLEGWGSLKLICVFPKEIDNKRKCKEEYEIPTPKTKRLDTRKCTDLIVLNLGWKVDEEMLRNYFSKFGDLVLVQIKKDRETNHSKGYAFVRFADYDGQVLCLAEQHLIDGRWCSVKVPFSKS---EADKQEITKKIHVSYSAEELEMEDLRKAFEEYGYVVDIFIPKPFRNFAFVTFELSEVAQQLIGRCVTVKGH-TLTIGSAVPKITGNKKLPIPAQFPICPYNEQGPMTAGRYGWSSYEPAPMQSSRYKARQFRNSAIMGNYGTLMSTAAVANSSSNQSYLMSNGRIHPHG----LISFEYNHQQSSQQAVPAATDIGQNTAAMAALNILNNP 390
The following BLAST results are available for this feature:
BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
TARDBP2.505e-7046.69TAR DNA binding protein [Source:HGNC Symbol;Acc:HG... [more]
TARDBP2.505e-7046.69TAR DNA binding protein [Source:HGNC Symbol;Acc:HG... [more]
AL109811.32.505e-7046.69novel protein[more]
TARDBP2.512e-7046.69TAR DNA binding protein [Source:HGNC Symbol;Acc:HG... [more]
TARDBP2.512e-7046.69TAR DNA binding protein [Source:HGNC Symbol;Acc:HG... [more]
back to top
BLAST of TAR DNA-binding protein 43 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
tdp-17.488e-3631.13Tar DNA-binding protein homolog 1 [Source:UniProt... [more]
tdp-12.175e-3531.13Tar DNA-binding protein homolog 1 [Source:UniProt... [more]
sqd-16.396e-1427.81Homologous to Drosophila SQD (Squid) protein [Sou... [more]
sqd-16.396e-1427.81Homologous to Drosophila SQD (Squid) protein [Sou... [more]
sqd-16.396e-1427.81Homologous to Drosophila SQD (Squid) protein [Sou... [more]
back to top
BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
TBPH4.717e-7744.11gene:FBgn0025790 transcript:FBtr0089626[more]
TBPH1.458e-7648.91gene:FBgn0025790 transcript:FBtr0089625[more]
TBPH1.458e-7648.91gene:FBgn0025790 transcript:FBtr0089624[more]
TBPH1.458e-7648.91gene:FBgn0025790 transcript:FBtr0089627[more]
TBPH1.458e-7648.91gene:FBgn0025790 transcript:FBtr0301643[more]
back to top
BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
tardbpl1.948e-6945.31TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB... [more]
tardbpl2.085e-6945.42TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB... [more]
tardbpl2.085e-6945.42TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB... [more]
tardbpl2.457e-6945.38TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB... [more]
tardbpl2.457e-6945.38TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB... [more]
back to top
BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
jarid21.683e-7245.58jumonji and AT-rich interaction domain containing ... [more]
jarid29.345e-4646.49jumonji and AT-rich interaction domain containing ... [more]
kcnj48.422e-1828.79potassium inwardly rectifying channel subfamily J ... [more]
kcnj42.290e-1728.79potassium inwardly rectifying channel subfamily J ... [more]
kcnj42.811e-1728.79potassium inwardly rectifying channel subfamily J ... [more]
back to top
BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Tardbp7.886e-6945.91TAR DNA binding protein [Source:MGI Symbol;Acc:MGI... [more]
Tardbp9.411e-6945.91TAR DNA binding protein [Source:MGI Symbol;Acc:MGI... [more]
Tardbp9.411e-6945.91TAR DNA binding protein [Source:MGI Symbol;Acc:MGI... [more]
Tardbp9.411e-6945.91TAR DNA binding protein [Source:MGI Symbol;Acc:MGI... [more]
Tardbp9.411e-6945.91TAR DNA binding protein [Source:MGI Symbol;Acc:MGI... [more]
back to top
BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q28F51|TADBP_XENTR9.338e-7245.58TAR DNA-binding protein 43 OS=Xenopus tropicalis O... [more]
sp|Q13148|TADBP_HUMAN2.148e-6946.80TAR DNA-binding protein 43 OS=Homo sapiens OX=9606... [more]
sp|Q5R5W2|TADBP_PONAB2.217e-6946.80TAR DNA-binding protein 43 OS=Pongo abelii OX=9601... [more]
sp|Q5ZLN5|TADBP_CHICK5.167e-6846.40TAR DNA-binding protein 43 OS=Gallus gallus OX=903... [more]
sp|Q921F2|TADBP_MOUSE3.071e-6746.00TAR DNA-binding protein 43 OS=Mus musculus OX=1009... [more]
back to top
BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A183SYD12.141e-9344.96TAR DNA-binding protein 43 OS=Schistocephalus soli... [more]
A0A0X3NQN62.178e-9344.96TAR DNA-binding protein 43 OS=Schistocephalus soli... [more]
A0A068Y5Q16.519e-9155.51Tar DNA binding protein OS=Echinococcus multilocul... [more]
A0A068WI346.519e-9155.51Tar DNA binding protein OS=Echinococcus granulosus... [more]
A0A0R3W3I11.356e-9055.51Uncharacterized protein OS=Taenia asiatica OX=6051... [more]
back to top
BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
tardbpl1.787e-7046.09TAR DNA binding protein [Source:NCBI gene;Acc:1030... [more]
tardbpl2.163e-7046.36TAR DNA binding protein [Source:NCBI gene;Acc:1030... [more]
tardbp1.705e-6745.17TAR DNA-binding protein 43-like [Source:NCBI gene;... [more]
msi2b6.538e-2028.86RNA-binding protein Musashi homolog 2 [Source:NCBI... [more]
msi2b9.913e-2028.86RNA-binding protein Musashi homolog 2 [Source:NCBI... [more]
back to top
BLAST of TAR DNA-binding protein 43 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSPMAT00000009806.14.372e-7045.28pep scaffold:Pmarinus_7.0:GL479354:9188:12030:-1 g... [more]
TARDBP2.626e-5346.15TAR DNA binding protein [Source:HGNC Symbol;Acc:HG... [more]
ENSPMAT00000007723.11.669e-2643.69pep scaffold:Pmarinus_7.0:GL496487:1152:2091:-1 ge... [more]
ENSPMAT00000004893.16.718e-1627.23pep scaffold:Pmarinus_7.0:GL479484:4:2056:-1 gene:... [more]
HNRNPA03.552e-1425.25heterogeneous nuclear ribonucleoprotein A0 [Source... [more]
back to top
BLAST of TAR DNA-binding protein 43 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 4
Match NameE-valueIdentityDescription
HRP15.754e-1021.51Subunit of cleavage factor I; cleavage factor I is... [more]
NSR12.121e-925.77Nucleolar protein that binds nuclear localization ... [more]
MRD14.541e-828.65Essential conserved small ribosomal subunit (40s) ... [more]
SNP15.883e-732.14Component of U1 snRNP required for mRNA splicing v... [more]
back to top
BLAST of TAR DNA-binding protein 43 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO449401.390e-4938.04Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO398791.138e-1325.60Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO384172.561e-1129.19Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO493499.315e-1127.74Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO333895.388e-1026.71Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
tardbp1.634e-6945.04TAR DNA-binding protein 43-like [Source:NCBI gene;... [more]
tardbpl1.040e-6644.62TAR DNA binding protein [Source:NCBI gene;Acc:1011... [more]
tardbpl7.062e-6045.41TAR DNA binding protein [Source:NCBI gene;Acc:1011... [more]
msi2a2.841e-1828.28musashi RNA binding protein 2 [Source:NCBI gene;Ac... [more]
msi2a3.809e-1828.28musashi RNA binding protein 2 [Source:NCBI gene;Ac... [more]
back to top
BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000012144.10.000e+0100.00SMESG000012144.1[more]
SMESG000012144.10.000e+099.31SMESG000012144.1[more]
SMESG000012144.10.000e+099.31SMESG000012144.1[more]
SMESG000032661.18.534e-8853.11SMESG000032661.1[more]
SMESG000032660.14.699e-8139.79SMESG000032660.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30034732 ID=SMED30034732|Name=TAR DNA-binding protein 43|organism=Schmidtea mediterranea sexual|type=transcript|length=1830bp
ATCTATATAAATCTTATATGAGAATTTTAAATTAAAATGAAGTATGTGAT
TGTTTGTGAAGAAGAAGAAGAGCCAACAATTGAGTTACCATTAGAAGAAG
ATGGAACTCTTTTATTATCTACTTTAACATGCCAGTTTCCCAAAGCTACT
GGTTTAAAATATAAAAGTAAAGATACTGGAATATATAGAGGAGTTAGATT
TGCTTCTGATAGATTTTATCCACCTCCCGAGGGTTGGGAGACTTATACCT
ACTCTTGTGTTTTATTTAAAGATAATAAACGAAAATCAGACGATGAACAA
TATACATTAGCTAAGACTAAGAAAATGGAAGGCAAAAAATGTACAGATTT
AATTGTATTAAATATACCTTGGCGAACAGACGATGAAGCTTTGAAGATGT
ATTTTTCTAAATTTGGCGATGTCGTTATGGTTCAAGTGAAAAGAGAACCA
GATACATTAAAGAGTAAAGGTTATGCATTTATCAGATTTGCTGATTACGA
TGCACAAGTCATGTGTCTAGCAGAACAACATTGTATTGATAATCGGTGGT
GCGAAGTTAAAATTCCATATTCAAAATCTGTTCAGATGAATCCAGAAGCC
AATGAAGTTCGAAACAAAATACATGTTGGACGTCTGTCGGAAGCTGTAAC
TGCAGACGTTTTACGGAGCTTTTTCAACCAATATGGAAAAGTTGAATCTA
TTTATATTCCAAGGCCGTTTAGGTCGTTCGCTTTCGTTAGTTTTGAAGAT
GAGTCAACGGCACAGAGTTTATTAGGAAGAGAGTTGAAAATAAATGACGA
TTGTGTAGTGACAATCAGTGCAGCTTCACCAAAATCCAATCACAACCAGA
ACAATATGAATGGTCGCGCGCAGCCGGGTTATGGGCATTGGAATACATAT
GATGTATTTTCAGATGGCAGAGGCGGAATGAACCGGAACCGATCCTGTCA
AAATAAATTAATGCCAAATTCCAATCAAATGCCACACGAGTGGTCCAATT
ATCTCCAACAGCAGCACATGCATGCGTCCCAAGCGCAGGCCCAACGACAA
TTCACAACCCCAGACATGAGCCAGAACACGAATGCAATGGCTGCATTGAA
TATCATCAACAATCCCAGTGTGGTGGCAGCGATTATGAGCGCGGCTGCCG
CCCGTGCCCAACAAGGAGATGTTACCAGCGGTCATTTGATGCCGACAGTG
TCAAGCGGACTCGGTGGTGGCGGCTACATGGGCAAGCCTGATGTTGGTCA
GAATCAACAGCAATCTCAACAGCCTCAACCTCAGCCTCAACAACAGTTTC
TCTATTCTCATATTCCGAATCAGAACAGTTGGGGTTACTAGCCACCATCG
CGTCAAGAAGATTTGATTTTGTAGGAATGGTGTAGTTTTGTCTTTGTTGG
TGTGCAGTGTGGTAGTATGTGCTAATTCTGCTGACACAAGTGATAGTTTT
GAGATGATATTTATACTCGTGACTTGACAGGATAGATGGTGATAATAATG
ATGGTGATGATGCTGCTGGTGATATGTGACTTCTTGATGCTGGAACGTGA
AATCAAATGCTTATTTGTTATTATATTTCATTATTATGTCACTCTCACTT
GTATAAATTGCGATAGTTGTTTGTCAGTTTTTTGGAGTTATTTTGTGCTG
TATTTATTTTCTCTTTGCTCGCTCGGAATGCTTAGTTTGTGCGGTCGTGT
CTCTTTAGAAATGGTTTGTGTTCATTATAATTAAGAAAATTTAAATAAAA
GACGCATGTTTTGTTATTTAAATTTTGTAACAACTTGTTTTGTTATAATA
AAATGAATTTATATTTTGCGTTAAAAAAAA
back to top

protein sequence of SMED30034732-orf-1

>SMED30034732-orf-1 ID=SMED30034732-orf-1|Name=SMED30034732-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=435bp
MKYVIVCEEEEEPTIELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIY
RGVRFASDRFYPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGK
KCTDLIVLNIPWRTDDEALKMYFSKFGDVVMVQVKREPDTLKSKGYAFIR
FADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRL
SEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDESTAQSLLGREL
KINDDCVVTISAASPKSNHNQNNMNGRAQPGYGHWNTYDVFSDGRGGMNR
NRSCQNKLMPNSNQMPHEWSNYLQQQHMHASQAQAQRQFTTPDMSQNTNA
MAALNIINNPSVVAAIMSAAAARAQQGDVTSGHLMPTVSSGLGGGGYMGK
PDVGQNQQQSQQPQPQPQQQFLYSHIPNQNSWGY*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0003677DNA binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000070intestinal phagocyte
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR041105TDP43_N
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 194..261
e-value: 1.1E-10
score: 51.5
coord: 104..175
e-value: 2.2E-15
score: 67.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 196..244
e-value: 8.2E-10
score: 38.4
coord: 105..162
e-value: 2.8E-12
score: 46.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 103..181
score: 13.328
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 193..253
score: 13.754
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 185..270
e-value: 2.8E-17
score: 64.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 90..184
e-value: 6.5E-19
score: 70.0
IPR041105TAR DNA-binding protein 43, N-terminalPFAMPF18694TDP43_Ncoord: 3..76
e-value: 4.1E-29
score: 100.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 403..425
NoneNo IPR availablePANTHERPTHR23147:SF103TAR DNA-BINDING PROTEIN 43coord: 2..377
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 2..377
NoneNo IPR availableCDDcd12321RRM1_TDP43coord: 104..180
e-value: 1.07539E-40
score: 137.518
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 105..246