SMED30034553

Overview
NameSMED30034553
Smed IDSMED30034553
Length (bp)2314
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30034553 (SMED30034553) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30034553 (SMED30034553) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30034553 (SMED30034553) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30034553 (SMED30034553) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30034553

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30034553SMESG000076754.1 SmedASXL_015463SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30034553SMESG000076754.1 SmedASXL_015463SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30034553SMESG000076754.1 Contig47850newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30034553SMESG000076754.1 Contig47850uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30034553 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001709:44243..48812 +11558
Homology
[Close]
BLAST of SMED30034553 vs. TrEMBL
Match: A0A0H3YJ76 (Slc17a-11 (Fragment) OS=Schmidtea mediterranea OX=79327 GN=slc17a-11 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.423e-24
Identity = 83/311 (26.69%), Postives = 152/311 (48.87%), Query Frame = 2 
Query:  818 LFNWLRMPYLMKTHSKIVRILSLHLDVFKFKNNVFIDDIKREYSICETLANQFPMEKVRPVFYRFMNCLYGIIDKTPSNHLINKEMDERVIDLLLRLFEKY----DSKGSLKLEYTTEFSCSFCDYKGSVNSKNYILSLKRNRFLMKFKENQLIHNIKCLICKNALKETISFKRIPEFAIFHYPKGLREDISKYENKIITDDNRKLSIVGIVESSSEYPF--AEVPENPISYLEYVFNDVTMDNQFRPKYTVHVRNKRGWYSLNGYQQLLCNPQEALGPIDFNHVKFIIFGVISDPQAYRHQFSLQEFIDN 1732
            + NWL++  L K  SKI+  L LHLDVF+  ++  ++++K EYSI    AN   ME V  + + F++ L  ++ K+ S    N++ DE   + +L+    Y    +SK  +  +YT  F C  C+   S    +Y+L+L  +++  +  +  + + I C  C N  +  I+ + I +F I H   G RE+I ++E       N    ++G++ES  ++P    +   N   YL  +             Y +H R++ GW++++     L  P +++        +F+I+G +S  Q    +F ++EF  N
Sbjct:   94 IINWLKLSTL-KVQSKIICFLILHLDVFRLNSDSLLNELKDEYSIINKFANLCKMELVNSLCFNFISKL-SLLSKSVSK---NEDFDENFENQILKSLNNYLININSKERVLCKYTFHFDCRSCNVVYSKLHCDYVLTLPYDKYYFRISKKGISYRISCEKCSNRAEIKITVQNISKFLIIHNENGCRENIKRFEAGFHL-RNDSFPLIGVLESKDDFPRIDGKYQMNFQQYLTTIAISEKPAGSISDDYAIHYRHQNGWFTMSENGLPLSCPADSITTTAGLSARFLIYGKLSSSQLIDDRFDVKEFFRN 398
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BLAST of SMED30034553 vs. Planmine SMEST
Match: SMESG000076754.1 (SMESG000076754.1)

HSP 1 Score: 1384.39 bits (3582), Expect = 0.000e+0
Identity = 743/743 (100.00%), Postives = 743/743 (100.00%), Query Frame = 2 
Query:   77 CPMCFESNVFSKIVTLGTVQYCENDLCSFCKILGDTTALSNYENEFYKTQEYYDMAVNTKLPLVTNDNKYGLDTDNIEKEIVALQMDSNLEFNNNIFNGKCPLCLKFNILSEIIYVNGIYLCENKSCLFFETHRSYIEHLHTKTVELEEKKLSSNFIHDTNNILPENMSSENIKLKDQYSSDIVKNIEIIDLSKELNNFDQYEXXXXXXXXXXXXXXXXXXXXXXXXVIDPAVASMWESSFYQFNNKLFNWLRMPYLMKTHSKIVRILSLHLDVFKFKNNVFIDDIKREYSICETLANQFPMEKVRPVFYRFMNCLYGIIDKTPSNHLINKEMDERVIDLLLRLFEKYDSKGSLKLEYTTEFSCSFCDYKGSVNSKNYILSLKRNRFLMKFKENQLIHNIKCLICKNALKETISFKRIPEFAIFHYPKGLREDISKYENKIITDDNRKLSIVGIVESSSEYPFAEVPENPISYLEYVFNDVTMDNQFRPKYTVHVRNKRGWYSLNGYQQLLCNPQEALGPIDFNHVKFIIFGVISDPQAYRHQFSLQEFIDNHGQYVRENTIENPLSIQNETDTNKIINGKSNIKSRPKRKLKQCLRKEKNMKQNPNILNENNFDNGKKNQIATEKNSNQINIDKLVLASSQLPCYILSRSPEQFIPDYNSQLXXXXXXXXXXXXXXXXXALELDALQFPKKRKINDLRXXXXXXXXXXXXPLPPKSETQNITINIDYLISKTSKKISQLINK 2305
            CPMCFESNVFSKIVTLGTVQYCENDLCSFCKILGDTTALSNYENEFYKTQEYYDMAVNTKLPLVTNDNKYGLDTDNIEKEIVALQMDSNLEFNNNIFNGKCPLCLKFNILSEIIYVNGIYLCENKSCLFFETHRSYIEHLHTKTVELEEKKLSSNFIHDTNNILPENMSSENIKLKDQYSSDIVKNIEIIDLSKELNNFDQYENSFKKKDKIIKKRKLRNNNNSKHNVIDPAVASMWESSFYQFNNKLFNWLRMPYLMKTHSKIVRILSLHLDVFKFKNNVFIDDIKREYSICETLANQFPMEKVRPVFYRFMNCLYGIIDKTPSNHLINKEMDERVIDLLLRLFEKYDSKGSLKLEYTTEFSCSFCDYKGSVNSKNYILSLKRNRFLMKFKENQLIHNIKCLICKNALKETISFKRIPEFAIFHYPKGLREDISKYENKIITDDNRKLSIVGIVESSSEYPFAEVPENPISYLEYVFNDVTMDNQFRPKYTVHVRNKRGWYSLNGYQQLLCNPQEALGPIDFNHVKFIIFGVISDPQAYRHQFSLQEFIDNHGQYVRENTIENPLSIQNETDTNKIINGKSNIKSRPKRKLKQCLRKEKNMKQNPNILNENNFDNGKKNQIATEKNSNQINIDKLVLASSQLPCYILSRSPEQFIPDYNSQLENTSNGNNSSGESSNSSALELDALQFPKKRKINDLRSQSTSSFSSNISPLPPKSETQNITINIDYLISKTSKKISQLINK
Sbjct:    3 CPMCFESNVFSKIVTLGTVQYCENDLCSFCKILGDTTALSNYENEFYKTQEYYDMAVNTKLPLVTNDNKYGLDTDNIEKEIVALQMDSNLEFNNNIFNGKCPLCLKFNILSEIIYVNGIYLCENKSCLFFETHRSYIEHLHTKTVELEEKKLSSNFIHDTNNILPENMSSENIKLKDQYSSDIVKNIEIIDLSKELNNFDQYENSFKKKDKIIKKRKLRNNNNSKHNVIDPAVASMWESSFYQFNNKLFNWLRMPYLMKTHSKIVRILSLHLDVFKFKNNVFIDDIKREYSICETLANQFPMEKVRPVFYRFMNCLYGIIDKTPSNHLINKEMDERVIDLLLRLFEKYDSKGSLKLEYTTEFSCSFCDYKGSVNSKNYILSLKRNRFLMKFKENQLIHNIKCLICKNALKETISFKRIPEFAIFHYPKGLREDISKYENKIITDDNRKLSIVGIVESSSEYPFAEVPENPISYLEYVFNDVTMDNQFRPKYTVHVRNKRGWYSLNGYQQLLCNPQEALGPIDFNHVKFIIFGVISDPQAYRHQFSLQEFIDNHGQYVRENTIENPLSIQNETDTNKIINGKSNIKSRPKRKLKQCLRKEKNMKQNPNILNENNFDNGKKNQIATEKNSNQINIDKLVLASSQLPCYILSRSPEQFIPDYNSQLENTSNGNNSSGESSNSSALELDALQFPKKRKINDLRSQSTSSFSSNISPLPPKSETQNITINIDYLISKTSKKISQLINK 745
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BLAST of SMED30034553 vs. Planmine SMEST
Match: SMESG000019961.1 (SMESG000019961.1)

HSP 1 Score: 124.79 bits (312), Expect = 1.751e-29
Identity = 80/307 (26.06%), Postives = 148/307 (48.21%), Query Frame = 2 
Query:  818 LFNWLRMPYLMKTHSKIVRILSLHLDVFKFKNNVFIDDIKREYSICETLANQFPMEKVRPVFYRFMNCLYGIIDKTPSNHLINKEMDERVIDLLLRLFEKYDSKGSLKLEYTTEFSCSFCDYKGSVNSKNYILSLKRNRFLMKFKENQLIHNIKCLICKNALKETISFKRIPEFAIFHYPKGLREDISKYENKIITDDNRKLSIVGIVESSSEYPF--AEVPENPISYLEYVFNDVTMDNQFRPKYTVHVRNKRGWYSLNGYQQLLCNPQEALGPIDFNHVKFIIFGVISDPQAYRHQFSLQEFIDN 1732
            + NWL++  L K  SKI+  L LHLDVF+   +  ++++K EYSI    AN F ME V  + + F++ L  +      N   ++  + +++  L      ++SK  +  +YT  F C  C+   S    +Y+L+L  +++  +  +  + + I C  C N  +  I+ + IP+F I H   G RE+I ++E       N    ++G++ES  ++P    +   N   YL  +             Y +H R++ GW++++     L  P +++        +F+I+G +S  Q    +F ++EF  N
Sbjct:  109 IINWLKLSTL-KVQSKIICFLILHLDVFRLNIDSLLNELKNEYSIINKFANLFKMELVNSLCFNFISKLSLLSKSVSKNEDFDENFENQILKSLNNYLINFNSKERVLCKYTFHFDCRSCNVVYSKLHCDYVLNLPYDKYYFRISKKGISYRISCEKCSNRAEIKITVQNIPKFLIIHNENGCRENIKRFEAGFHL-RNDSFPLIGVLESKDDFPQIDGKYQMNFQQYLTTIAISEKPAGSISDDYAIHYRHQNGWFTMSENGLPLSCPTDSITTTAGLSARFLIYGKLSSSQLIDDRFDVKEFFRN 413
[Close]
BLAST of SMED30034553 vs. Planmine SMEST
Match: SMESG000057083.1 (SMESG000057083.1)

HSP 1 Score: 101.679 bits (252), Expect = 5.464e-23
Identity = 62/184 (33.70%), Postives = 90/184 (48.91%), Query Frame = 2 
Query:  815 KLFNWLRMPYLMKTHSKIVRILSLHLDVFKFKNNVFIDDIKREYSICETLANQFPMEKVRPVFYRFMNCLYGIIDKTPSNHLINKEMDERVIDLLLRLFEKYDSKGSLKLEYTTEFSCSFCDYKGSVNSKNYILSLKRNRFLMKFKENQLIHNIKCLICKNALKETISFKRIPEFAIFHYPKGL 1366
            KLFNWLR P    TH  IVRIL LHL+ FK   N  + D+K +Y   +  +N FP   ++ +FY FM  +Y +I+K   + +  K   + V++LL     KYD      LEY +   C  C  +    +K Y   L  +  L    EN +     C  C N   + I+F ++PE  IF++  G 
Sbjct:  168 KLFNWLRFPNAFNTHYSIVRILLLHLEAFKLNENEVL-DVKHQYEAIDLFSNYFPRNCIKHIFYNFMENVYYLINK---DEVSMKPHKDEVLNLLTSFLRKYDFDQKFSLEYESVSVCKNCGQQLRTLNKKYFFELADHFCL---SENSITSESICSKCTNVCCKKINFSKVPEAVIFYFSNGF 344
[Close]
BLAST of SMED30034553 vs. Planmine SMEST
Match: SMESG000019961.1 (SMESG000019961.1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.412e-22
Identity = 61/215 (28.37%), Postives = 110/215 (51.16%), Query Frame = 2 
Query:  818 LFNWLRMPYLMKTHSKIVRILSLHLDVFKFKNNVFIDDIKREYSICETLANQFPMEKVRPVFYRFMNCLYGIIDKTPSNHLINKEMDERVIDLLLRLFEKYDSKGSLKLEYTTEFSCSFCDYKGSVNSKNYILSLKRNRFLMKFKENQLIHNIKCLICKNALKETISFKRIPEFAIFHYPKGLREDISKYENKIITDDNRKLSIVGIVESSSEYP 1462
            + NWL++  L K  SKI+  L LHLDVF+   +  ++++K EYSI    AN F ME V  + + F++ L  +      N   ++  + +++  L      ++SK  +  +YT  F C  C+   S    +Y+L+L  +++  +  +  + + I C  C N  +  I+ + IP+F I H   G RE+I ++E       N    ++G++ES  ++P
Sbjct:  109 IINWLKLSTL-KVQSKIICFLILHLDVFRLNIDSLLNELKNEYSIINKFANLFKMELVNSLCFNFISKLSLLSKSVSKNEDFDENFENQILKSLNNYLINFNSKERVLCKYTFHFDCRSCNVVYSKLHCDYVLNLPYDKYYFRISKKGISYRISCEKCSNRAEIKITVQNIPKFLIIHNENGCRENIKRFEAGFHL-RNDSFPLIGVLESKDDFP 321
[Close]
BLAST of SMED30034553 vs. Planmine SMEST
Match: SMESG000068800.1 (SMESG000068800.1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.992e-19
Identity = 74/305 (24.26%), Postives = 136/305 (44.59%), Query Frame = 2 
Query:  818 LFNWLRMPYLMKTHSKIVRILSLHLDVFKFKNNVFIDDIKREYSICETLANQFPMEKVRPVFYRFMNCLYGIIDKTPSNHLINK-------EMDERVIDLLLRLFEKYDSKGSLKLEYTTEFSCSFCDYKGSVNSKNYILSLKRN-RFLMKFKENQLIHNIKCLICKNALKETISFKRIPEFAIFHYPKGLREDISKYENKIITDDNRKLSIVGIVESSSEYPFAEVPENPISYLEYVFNDVTMDNQFRPKYT--VHVRNKRGWYSLNGYQQLLCNP-QEALGPIDFNHVKFIIFGVISDPQAYR 1699
            +FNW   P ++K H K+   L +HL+ F       I ++++ Y  CE +A + P   V    Y+F+  L+        +H I K        M ER++  + +     D   S +  Y    +C  C +K S   +++ + L  +  +++  K N L     C  C  + +  I  +R+ +F     P+G+ +   +    I+   ++ L + GI+E      F ++PE      E++     M N  +PK+   +H RN  GW+ ++    +  +P  E+   I  N VK ++F  I+DP  +R
Sbjct:  112 IFNWFGFPIMLKFHIKVCYFLLIHLNFFDHTMYNQIYELRQFYYQCENIAFKIPSRLVSLTSYKFVKYLF-------DHHQIFKLFDIKKLNMSERILKSMDKFITALDKNASHRSIYGYVETCRSCGHKFSYLKEDFSIKLIESFDYIINNKFNYL---TGCKKCYGSSQVEIKLERLADFLYIDCPRGVNKTFQELNEIILEKPSKNLKLQGIIELKCPDQFDDLPEKEPKIEEFI-----MKNAVKPKFEFRIHFRNTFGWHCVDTNSGISIDPISESDIKISPNKVKILVFAEINDPSCFR 401
The following BLAST results are available for this feature:
BLAST of SMED30034553 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30034553 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30034553 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30034553 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30034553 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30034553 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30034553 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30034553 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0H3YJ761.423e-2426.69Slc17a-11 (Fragment) OS=Schmidtea mediterranea OX=... [more]
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BLAST of SMED30034553 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30034553 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30034553 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30034553 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30034553 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30034553 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000076754.10.000e+0100.00SMESG000076754.1[more]
SMESG000019961.11.751e-2926.06SMESG000019961.1[more]
SMESG000057083.15.464e-2333.70SMESG000057083.1[more]
SMESG000019961.13.412e-2228.37SMESG000019961.1[more]
SMESG000068800.16.992e-1924.26SMESG000068800.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30034553 ID=SMED30034553|Name=SMED30034553|organism=Schmidtea mediterranea sexual|type=transcript|length=2314bp
TTTTTGATAATGTTTTGAATTTATCTAATTTAATATTTAATTTAATTTTA
ATATTCTCATAATAACAATTATGAATTGTCCAATGTGTTTTGAATCAAAT
GTATTTTCCAAAATTGTTACTTTGGGAACAGTTCAATACTGTGAAAACGA
TTTGTGTTCATTCTGTAAAATTCTTGGAGATACCACAGCTTTAAGTAACT
ATGAAAATGAATTCTATAAAACTCAAGAATATTATGATATGGCAGTAAAT
ACGAAATTGCCATTAGTTACTAATGACAATAAATATGGTCTTGATACAGA
TAACATTGAAAAAGAAATTGTTGCCTTGCAAATGGATTCTAATTTAGAAT
TCAATAACAACATTTTTAATGGAAAATGTCCGTTGTGCCTCAAATTTAAT
ATACTTTCAGAAATCATTTATGTGAACGGTATTTACCTTTGTGAAAATAA
ATCATGCTTATTTTTCGAAACACATCGATCATATATTGAGCATTTACATA
CAAAAACAGTTGAGCTTGAAGAAAAGAAATTATCATCAAATTTTATACAT
GATACAAATAATATATTACCAGAGAATATGTCATCGGAAAATATTAAGTT
AAAAGATCAATACAGCTCAGATATTGTTAAAAATATTGAAATTATTGACT
TATCCAAAGAACTTAATAATTTTGACCAATATGAGAATAGTTTTAAAAAA
AAAGATAAAATAATCAAAAAAAGAAAATTACGAAATAACAATAATTCGAA
GCACAATGTAATTGATCCAGCCGTAGCGTCCATGTGGGAATCCAGTTTCT
ATCAATTTAATAATAAATTATTTAACTGGTTACGAATGCCATACTTAATG
AAGACTCATTCGAAAATTGTCAGGATACTTTCATTGCATCTCGATGTGTT
TAAGTTTAAAAACAATGTATTTATTGATGATATTAAACGCGAATATAGTA
TTTGTGAAACACTAGCCAATCAATTCCCTATGGAAAAAGTGAGGCCCGTG
TTTTACAGATTTATGAATTGTCTTTATGGAATAATCGACAAAACTCCAAG
TAATCATCTCATAAACAAGGAAATGGATGAAAGAGTTATAGATTTATTAC
TGCGATTGTTTGAGAAATATGATAGCAAAGGATCACTGAAACTAGAATAC
ACAACCGAGTTCTCCTGCTCATTCTGTGATTACAAAGGCTCGGTGAATTC
TAAAAACTACATATTGTCACTTAAACGTAACAGATTTCTGATGAAATTTA
AGGAAAATCAATTAATCCACAATATTAAATGTCTGATATGCAAGAACGCA
TTGAAAGAAACGATTTCGTTCAAGCGAATTCCAGAATTCGCCATTTTCCA
TTATCCTAAAGGATTGAGGGAAGACATCAGTAAGTATGAGAACAAAATCA
TCACCGATGACAATAGGAAACTGTCGATCGTGGGAATAGTCGAATCCAGC
TCCGAGTATCCATTCGCGGAAGTGCCGGAGAATCCAATCAGTTACTTGGA
ATACGTTTTTAATGATGTAACAATGGACAACCAGTTTCGTCCCAAATACA
CGGTCCATGTTCGCAACAAGCGCGGGTGGTATAGTTTGAATGGCTACCAA
CAGCTCCTGTGTAACCCACAGGAAGCATTAGGACCAATCGATTTTAATCA
TGTCAAGTTTATTATTTTTGGAGTAATTTCTGATCCTCAAGCATATCGTC
ATCAATTTTCACTGCAAGAATTTATTGATAATCACGGGCAATATGTGAGG
GAGAATACAATAGAAAACCCATTAAGTATCCAAAATGAAACCGATACCAA
TAAAATCATCAATGGAAAATCAAATATTAAATCAAGGCCAAAGCGAAAGT
TAAAACAATGCCTGAGAAAAGAAAAAAACATGAAGCAGAATCCAAATATC
TTAAATGAGAATAATTTCGATAATGGGAAGAAGAATCAAATTGCAACAGA
AAAAAATTCAAATCAAATCAATATTGACAAATTAGTATTAGCATCCTCGC
AATTACCGTGTTACATTTTGTCTCGTTCTCCAGAACAATTTATCCCAGAT
TATAACTCACAATTAGAAAATACTTCCAATGGAAACAATTCATCTGGGGA
ATCATCTAATTCGTCAGCACTAGAGTTAGATGCCCTACAATTTCCCAAAA
AACGAAAAATTAATGATTTGCGATCTCAATCCACATCTTCATTTTCCAGT
AATATTTCTCCCTTGCCGCCAAAATCCGAAACACAAAATATCACGATCAA
TATAGATTATTTAATTAGTAAGACATCTAAAAAAATCAGTCAATTAATTA
ATAAGTAGTTATAT
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protein sequence of SMED30034553-orf-1

>SMED30034553-orf-1 ID=SMED30034553-orf-1|Name=SMED30034553-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=746bp
MNCPMCFESNVFSKIVTLGTVQYCENDLCSFCKILGDTTALSNYENEFYK
TQEYYDMAVNTKLPLVTNDNKYGLDTDNIEKEIVALQMDSNLEFNNNIFN
GKCPLCLKFNILSEIIYVNGIYLCENKSCLFFETHRSYIEHLHTKTVELE
EKKLSSNFIHDTNNILPENMSSENIKLKDQYSSDIVKNIEIIDLSKELNN
FDQYENSFKKKDKIIKKRKLRNNNNSKHNVIDPAVASMWESSFYQFNNKL
FNWLRMPYLMKTHSKIVRILSLHLDVFKFKNNVFIDDIKREYSICETLAN
QFPMEKVRPVFYRFMNCLYGIIDKTPSNHLINKEMDERVIDLLLRLFEKY
DSKGSLKLEYTTEFSCSFCDYKGSVNSKNYILSLKRNRFLMKFKENQLIH
NIKCLICKNALKETISFKRIPEFAIFHYPKGLREDISKYENKIITDDNRK
LSIVGIVESSSEYPFAEVPENPISYLEYVFNDVTMDNQFRPKYTVHVRNK
RGWYSLNGYQQLLCNPQEALGPIDFNHVKFIIFGVISDPQAYRHQFSLQE
FIDNHGQYVRENTIENPLSIQNETDTNKIINGKSNIKSRPKRKLKQCLRK
EKNMKQNPNILNENNFDNGKKNQIATEKNSNQINIDKLVLASSQLPCYIL
SRSPEQFIPDYNSQLENTSNGNNSSGESSNSSALELDALQFPKKRKINDL
RSQSTSSFSSNISPLPPKSETQNITINIDYLISKTSKKISQLINK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 697..716
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 701..716