Heterogeneous nuclear ribonucleoprotein U-like protein 1

Overview
NameHeterogeneous nuclear ribonucleoprotein U-like protein 1
Smed IDSMED30034534
Length (bp)1034
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Heterogeneous nuclear ribonucleoprotein U-like protein 1 (SMED30034534) t-SNE clustered cells

Violin plots show distribution of expression levels for Heterogeneous nuclear ribonucleoprotein U-like protein 1 (SMED30034534) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Heterogeneous nuclear ribonucleoprotein U-like protein 1 (SMED30034534) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Heterogeneous nuclear ribonucleoprotein U-like protein 1 (SMED30034534) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30034534

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30034534h1SMcG0009537 SmedASXL_006169SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
epidermisSMED30034534h1SMcG0009537 dd_Smed_v4_4199_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Human
Match: CCDC97 (coiled-coil domain containing 97 [Source:HGNC Symbol;Acc:HGNC:28289])

HSP 1 Score: 57.3806 bits (137), Expect = 1.094e-8
Identity = 39/140 (27.86%), Postives = 65/140 (46.43%), Query Frame = 1 
Query:  100 CNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNPVNVKNRR------YKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKE 501
              V  M H ++ +   + +    + D +    K  ++   + + P +FLE++   L  E H   F ++  D ++  FY  ++   G       R       Y  L  LI+ G+YFS EQM+ R PLLY +YIG  L+ +E
Sbjct:   61 AAVSAMLHAVAASRLPVCSQQQGEPD-LTEHEKVAILAQLYHEKPLVFLERFRTGLR-EEHLACFGHVRGDHRA-DFYCAEVARQGTARPRTLRTRLRNRRYAALRELIQGGEYFSDEQMRFRAPLLYEQYIGQYLTQEE 197
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Celegans
Match: R10D12.13 (pep chromosome:WBcel235:V:13962417:13963840:1 gene:WBGene00011194.1 transcript:R10D12.13a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:R10D12.13)

HSP 1 Score: 50.0618 bits (118), Expect = 9.750e-7
Identity = 34/106 (32.08%), Postives = 59/106 (55.66%), Query Frame = 1 
Query:  196 KYDVIKA-SFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNPVNVKNR--RYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQ 504
            K +++K  S EK P +FL +Y KYL     G IF +   DD  V   + +++        + R  R+  + NL++EG++FS  +M+ R+P L+   IG  L+++E+
Sbjct:   31 KMEILKTLSKEKLP-VFLSRYQKYLE-PVDGQIFAD--NDDFVVQSIMKQIRGQQKMTEKEKRNYRFNAMQNLLKEGEFFSDAKMREREPYLFDAMIGKFLNDEER 132
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Celegans
Match: R10D12.13 (pep chromosome:WBcel235:V:13962417:13963840:1 gene:WBGene00011194.1 transcript:R10D12.13b.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:R10D12.13)

HSP 1 Score: 48.9062 bits (115), Expect = 2.159e-6
Identity = 34/108 (31.48%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:  196 KYDVIKA-SFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNPV----NVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQ 504
            K +++K  S EK P +FL +Y KYL     G IF +   DD  V   + +++            +N R+  + NL++EG++FS  +M+ R+P L+   IG  L+++E+
Sbjct:   31 KMEILKTLSKEKLP-VFLSRYQKYLE-PVDGQIFAD--NDDFVVQSIMKQIRGQQKMTEKEFQKRNYRFNAMQNLLKEGEFFSDAKMREREPYLFDAMIGKFLNDEER 134
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Fly
Match: CG7810 (gene:FBgn0032017 transcript:FBtr0079612)

HSP 1 Score: 90.8929 bits (224), Expect = 2.935e-20
Identity = 81/296 (27.36%), Postives = 137/296 (46.28%), Query Frame = 1 
Query:  106 VDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVA--------FYLDKLKNYGN--PVNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQEEKLGRCYD----SFSGFLMNNM-------LFREDRFRKNEDLKKEEKSLENSNC-------------IDNCXXXXXXXXXXXXXXXXXXNFKCTLD-----DKRFLEDEFLSIMKYKFLNGDD-DYNYSEVDNDSTLDDLEEITRDLEDRYF 873
            + ++F +L+ N +I+F         +    K  + + +F+K+   FL ++  +LN    G  F  LA  +   A          L+  +   N   V++KNRRY  +  L+++G+YFS  +M  R P LY   +G  L+  E E+K    YD    SFSG LM+ +       L  E +    + ++   +S   ++C              D+           EV          T +     ++  L +EFLS+MK +FL+G+D D++Y  VD+++ LDDL++I +D ED YF
Sbjct:   29 IIDIFKSLAENNQIVFKSQQIDDPEIPVEEKQQIARDAFDKNRENFLIRFGGFLNVRQLGS-FQELAVKEPIKADENLEEMCLLLEDFRRKLNTRAVSIKNRRYHAMQQLLDKGEYFSEHEMMQRAPDLYQELVGQYLT--EAEKKARDSYDVRNTSFSGILMHTLEKKQRDELLEETQQEGKQSVQVTSESNPQADCDVPVACRKQWGGFEDDEPVACSTSRNAEVRAPMNTTMISTPEFYNPGERELLRNEFLSMMKERFLSGEDKDFDYKAVDDNTLLDDLKQIEQDEEDAYF 321
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Zebrafish
Match: ccdc97 (coiled-coil domain containing 97 [Source:ZFIN;Acc:ZDB-GENE-131127-366])

HSP 1 Score: 97.8265 bits (242), Expect = 1.732e-22
Identity = 71/224 (31.70%), Postives = 120/224 (53.57%), Query Frame = 1 
Query:  196 KYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNPV----NVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQEEKLGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCXXXXXXXXXXXXXXXXXXNFKCTLDDKRFLEDEFLSIMKYKFLNGDDDYNYSEVDNDSTLDDLEEITRD 855
            K +V+   +   P +FLE+Y  +L  E H   F +L++D + V +Y  +++   +       V+N RY  L  L ++G+YFS EQM+ R PLLY +YIG  LS +E  ++      S +G L + ++   D +++     + E+  E   C        E  ++EE  +     ++   ++K  L +EFLS M  +FL+G DD+NYSEVD +   D+L+ ++RD
Sbjct:  121 KREVLMDQYRSRPLVFLERYQAHLKPE-HIDAFSHLSSDCR-VQYYCKEIQRRASGSADRRRVRNHRYAALRALQKDGQYFSEEQMRVRDPLLYEQYIGQYLSEEEILQRSEEVMRSGTGGLADLLI---DSYQEKLIQSRLEQEQEKEQCA------LEESEDEECEEVRQAEYEPNAEEKAMLREEFLSQMHQRFLDGKDDFNYSEVDENPDYDNLDIVSRD 333
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Xenopus
Match: a1cf (APOBEC1 complementation factor [Source:Xenbase;Acc:XB-GENE-952965])

HSP 1 Score: 76.2554 bits (186), Expect = 5.588e-15
Identity = 77/241 (31.95%), Postives = 129/241 (53.53%), Query Frame = 1 
Query:  220 FEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYG----NPVNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKE---QEEKLGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLE---NSNCIDNCXXXXXXXXXXXXXXXXXXNFKCTL--DDKRFLEDEFLSIMKYKFLNGDD-DYNYSEVDNDSTLDDLEEITRDLEDRYFEEEDATESHS 903
            +E  P +FLE++ K L  E H   F++L + D +  +Y  ++        +   V+N+RY  L  LI  G+YFS EQM+ R PL+Y  Y+G   S +E   Q  K      S S  L+N+                +E++L+    +         EE EDE+E   E   + +C++  +++  + +EF+S M  +FL+G D D++YS+VD+D  LD+L+ +T+D E+RYF++ED  E+ +
Sbjct:  111 YESKPLIFLERFRKVLK-EEHLECFNHL-SGDYTADYYCKEICKASLKRVDHTRVRNKRYAALQKLITAGEYFSDEQMRERDPLMYEHYVGQYQSEEEIMSQNSKDMSEATSLSTVLLNSC---------------QEQALQCRLKAQRELEESCMEEEEDEDEEESEIESDEECSVNSEERALMREEFISRMHQRFLDGKDRDFDYSQVDDDPDLDNLDIVTQDEEERYFDDEDPEEAKA 334
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Mouse
Match: Ccdc97 (coiled-coil domain containing 97 [Source:MGI Symbol;Acc:MGI:1196455])

HSP 1 Score: 85.1149 bits (209), Expect = 4.122e-18
Identity = 78/284 (27.46%), Postives = 140/284 (49.30%), Query Frame = 1 
Query:   97 TCNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNPVNVKNRR------YKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQEEKLGRCYDSFSG------FLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCXXXXXXXXXXXXXXXXXXNFKCTLDDKRFLEDEFLSIMKYKFLNG-DDDYNYSEVDNDSTLDDLEEITRDLEDRYFEEEDATESHSAQ 909
            +  V  M H ++ +   + +    + D +    K  ++   + K P +FLE++   L  E H   F +L  D ++  FY  ++   G       R       Y  L  LI+ G+YFS EQM+ R PLLY +YIG  L+ +E   +        SG      + ++++LF+       E   +++   +        + EE+ ++E++ SD+D + +    +++  L +EF S M  +FL+G D  ++YS VD++   D+L+ + RD EDRYF+EE+  +  SA+
Sbjct:   60 SPAVSAMLHAIAASHLPVCSQQQGEPD-LTEPEKVAILGQLYHKKPLVFLERFRTGLR-EEHLACFGHLRGDHRA-DFYCAEVARQGTARPRTLRTRLRNRRYAALRELIQGGEYFSDEQMRFRAPLLYEQYIGQYLTQEELNARTAAPQAPRSGSPGTPAYPLSDLLFQS----YQERELQQKLLQQQEEEEACFEEEEDSDEEDQRSDKDSEAWVPDSEERLILREEFTSRMHQRFLDGKDGGFDYSTVDDNPDFDNLDIVARDEEDRYFDEEEPEDVSSAE 336
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Mouse
Match: Ccdc97 (coiled-coil domain containing 97 [Source:MGI Symbol;Acc:MGI:1196455])

HSP 1 Score: 58.9214 bits (141), Expect = 5.447e-10
Identity = 40/135 (29.63%), Postives = 64/135 (47.41%), Query Frame = 1 
Query:  115 MFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNPVNVKNRR------YKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKE 501
            M H ++ +   + +    + D +    K  ++   + K P +FLE++   L  E H   F +L  D ++  FY  ++   G       R       Y  L  LI+ G+YFS EQM+ R PLLY +YIG  L+ +E
Sbjct:    1 MLHAIAASHLPVCSQQQGEPD-LTEPEKVAILGQLYHKKPLVFLERFRTGLR-EEHLACFGHLRGDHRA-DFYCAEVARQGTARPRTLRTRLRNRRYAALRELIQGGEYFSDEQMRFRAPLLYEQYIGQYLTQEE 132
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. UniProt/SwissProt
Match: sp|Q9DBT3|CCD97_MOUSE (Coiled-coil domain-containing protein 97 OS=Mus musculus OX=10090 GN=Ccdc97 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.883e-17
Identity = 78/284 (27.46%), Postives = 140/284 (49.30%), Query Frame = 1 
Query:   97 TCNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNPVNVKNRR------YKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQEEKLGRCYDSFSG------FLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCXXXXXXXXXXXXXXXXXXNFKCTLDDKRFLEDEFLSIMKYKFLNG-DDDYNYSEVDNDSTLDDLEEITRDLEDRYFEEEDATESHSAQ 909
            +  V  M H ++ +   + +    + D +    K  ++   + K P +FLE++   L  E H   F +L  D ++  FY  ++   G       R       Y  L  LI+ G+YFS EQM+ R PLLY +YIG  L+ +E   +        SG      + ++++LF+       E   +++   +        + EE+ ++E++ SD+D + +    +++  L +EF S M  +FL+G D  ++YS VD++   D+L+ + RD EDRYF+EE+  +  SA+
Sbjct:   60 SPAVSAMLHAIAASHLPVCSQQQGEPD-LTEPEKVAILGQLYHKKPLVFLERFRTGLR-EEHLACFGHLRGDHRA-DFYCAEVARQGTARPRTLRTRLRNRRYAALRELIQGGEYFSDEQMRFRAPLLYEQYIGQYLTQEELNARTAAPQAPRSGSPGTPAYPLSDLLFQS----YQERELQQKLLQQQEEEEACFEEEEDSDEEDQRSDKDSEAWVPDSEERLILREEFTSRMHQRFLDGKDGGFDYSTVDDNPDFDNLDIVARDEEDRYFDEEEPEDVSSAE 336
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. UniProt/SwissProt
Match: sp|Q96F63|CCD97_HUMAN (Coiled-coil domain-containing protein 97 OS=Homo sapiens OX=9606 GN=CCDC97 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 5.255e-8
Identity = 39/140 (27.86%), Postives = 65/140 (46.43%), Query Frame = 1 
Query:  100 CNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNPVNVKNRR------YKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKE 501
              V  M H ++ +   + +    + D +    K  ++   + + P +FLE++   L  E H   F ++  D ++  FY  ++   G       R       Y  L  LI+ G+YFS EQM+ R PLLY +YIG  L+ +E
Sbjct:   61 AAVSAMLHAVAASRLPVCSQQQGEPD-LTEHEKVAILAQLYHEKPLVFLERFRTGLR-EEHLACFGHVRGDHRA-DFYCAEVARQGTARPRTLRTRLRNRRYAALRELIQGGEYFSDEQMRFRAPLLYEQYIGQYLTQEE 197
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. TrEMBL
Match: K7F555 (Coiled-coil domain containing 97 OS=Pelodiscus sinensis OX=13735 GN=CCDC97 PE=4 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.076e-26
Identity = 81/233 (34.76%), Postives = 133/233 (57.08%), Query Frame = 1 
Query:  205 VIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNP----VNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKE-----QEEKLGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCXXXXXXXXXXXXXXXXXXNFKCTLDDKRFLEDEFLSIMKYKFLNGDD-DYNYSEVDNDSTLDDLEEITRDLEDRYF 873
            +++A +   P +FLE++ + L  E H G F +LA     V FY D+++  G        V+N+RY  L  LI+ G+YFS EQM+ R+PLLY +YIG  LS +E      + + G C  S SG LM++  ++E   +    +++E+   E++   +  + +++     E S    D++    ++K FL +EF S M  +FL+G D D++YSEVD +   D+L+ +TRD E+RYF
Sbjct:    3 ILRALYRDKPVVFLERFRRALRVE-HLGCFAHLAAR-YEVRFYCDEVRRAGRAKAGRTRVRNKRYAALQQLIKGGEYFSDEQMRAREPLLYEQYIGQYLSEEELLALGSQAQAGPC--SLSGVLMDS--YQEQVLQLRLHIQQEQ---EHACMEEEEEEDDDEGQCGEGSSSASDSWVPDTEEKAFLREEFTSRMHQRFLDGKDRDFDYSEVDENPEFDNLDIVTRDEEERYF 226
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. TrEMBL
Match: A0A4W3HBD4 (DUF2052 domain-containing protein OS=Callorhinchus milii OX=7868 GN=ccdc97 PE=4 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.873e-26
Identity = 92/281 (32.74%), Postives = 151/281 (53.74%), Query Frame = 1 
Query:   94 LTCNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYG----NPVNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKE---QEEKLGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCX-XXXXXXXXXXXXXXXXXNFKCTLDDKRFLEDEFLSIMKYKFLNGDD-DYNYSEVDNDSTLDDLEEITRDLEDRYFEEEDATESHSAQ 909
            +  ++  MFH+++ +   + +    + D +D   K D+I+  F   P +FLE+++K L  E H   F +L  D  +V FY D ++          NV+N+RY  L  LI++G+YFS EQM+NR PLLY  YIG  ++  E   Q  K      S S  LM+    R            +++  +     D C   EEE E+E+E S    +++  + D+K  L +EF+S M  +FL+G++ D++YS VD +   D+LE ++RD ED+YF+EE+  ++ S +
Sbjct:   88 MNASLKSMFHSVASSSVPVKSQQMDEPD-LDYEQKLDIIEELFWGKPVIFLERFHKLLR-EEHLSCFDHLPRD-YTVTFYCDSVRKCSVKKTARANVRNKRYAALQQLIKDGEYFSDEQMRNRDPLLYEHYIGQHMTEDEYVAQRSKTPGDAMSLSELLMDTYQER----------MVQQRLQQQQEQEDACVEEEEEDEEEDEESVSRAEDWMPSADEKTLLREEFVSQMHQRFLDGEERDFDYSAVDENPEFDNLEIVSRDEEDKYFDEEEPVDADSME 355
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. TrEMBL
Match: V9KY83 (Coiled-coil domain-containing protein 97-like protein (Fragment) OS=Callorhinchus milii OX=7868 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.432e-26
Identity = 92/281 (32.74%), Postives = 151/281 (53.74%), Query Frame = 1 
Query:   94 LTCNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYG----NPVNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKE---QEEKLGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCX-XXXXXXXXXXXXXXXXXNFKCTLDDKRFLEDEFLSIMKYKFLNGDD-DYNYSEVDNDSTLDDLEEITRDLEDRYFEEEDATESHSAQ 909
            +  ++  MFH+++ +   + +    + D +D   K D+I+  F   P +FLE+++K L  E H   F +L  D  +V FY D ++          NV+N+RY  L  LI++G+YFS EQM+NR PLLY  YIG  ++  E   Q  K      S S  LM+    R            +++  +     D C   EEE E+E+E S    +++  + D+K  L +EF+S M  +FL+G++ D++YS VD +   D+LE ++RD ED+YF+EE+  ++ S +
Sbjct:   90 MNASLKSMFHSVASSSVPVKSQQMDEPD-LDYEQKLDIIEELFWGKPVIFLERFHKLLR-EEHLSCFDHLPRD-YTVTFYCDSVRKCSVKKTARANVRNKRYAALQQLIKDGEYFSDEQMRNRDPLLYEHYIGQHMTEDEYVAQRSKTPGDAMSLSELLMDTYQER----------MVQQRLQQQQEQEDACVEEEEEDEEEDEESVSRAEDWMPSADEKTLLREEFVSQMHQRFLDGEERDFDYSAVDENPEFDNLEIVSRDEEDKYFDEEEPVDADSME 357
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. TrEMBL
Match: A0A0P7VRD3 (Coiled-coil domain-containing protein 97-like OS=Scleropages formosus OX=113540 GN=Z043_104510 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.717e-25
Identity = 89/270 (32.96%), Postives = 149/270 (55.19%), Query Frame = 1 
Query:   91 DLTCNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNP----VNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKE----QEEKLGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCXXXXXXXXXXXXXXXXXXNFKCTLDDKRFLEDEFLSIMKYKFLNG-DDDYNYSEVDNDSTLDDLEEITRDLEDRYF 873
            D   ++  M   ++++E  + +    + D +    +  ++   +   P +FLE+Y  +L  E H G F +L +DD  V  Y  +++   +       VKN+RY  L  L +EG+YFS EQM+ R+PLLY +YIG  LS +E     EE L       +  L+N+    ++R  +N  L+++E+  E++   +  D EEE ED++E    +G  ++ + ++K  L DEF+S M  +FL G D D+NYSEVD +   D+L+ ++RD E+RYF
Sbjct:   87 DCPGDLLAMIEAVAVSESPVKSQQLGEPD-LTLGERRALLLQQYRTKPLVFLERYQAHLKPE-HLGAFSHL-SDDCRVQHYGQEVRRRASSQTSKTRVKNQRYAALRALQQEGQYFSEEQMRLREPLLYEQYIGQYLSEEELVKRSEELLQGGTGGLADLLINSY---QERLLQNRLLEQQER--EDAAQEETEDEEEEEEDDDEARGPEGPEWEPSAEEKALLRDEFVSQMHRRFLEGKDKDFNYSEVDENPDYDNLDIVSRDAEERYF 348
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. TrEMBL
Match: A0A2D0S2P4 (adenylate cyclase type 2-like isoform X5 OS=Ictalurus punctatus OX=7998 GN=LOC108272792 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.221e-25
Identity = 75/236 (31.78%), Postives = 131/236 (55.51%), Query Frame = 1 
Query:  196 KYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLK----NYGNPVNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKE----QEEKLGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCXXXXXXXXXXXXXXXXXXNFKCTLDDKRFLEDEFLSIMKYKFLNG-DDDYNYSEVDNDSTLDDLEEITRDLEDRYFE 876
            K  ++   +   P +FLE+Y+ +L  E H   F ++++D ++  +Y  +++    +  N   V+N RY  L  L +EG+YFS EQM+ R+PLLY +YIG  LS +E     EE + +     S  L+N+       +++ E  K+ ++  +  NC D        E+E+   +    +++ T ++K  L +EFLS M  +FL G D ++NYSEVD +   D+L+ ++RD E++YF+
Sbjct:   81 KKQLLMEQYNTKPVVFLERYHTHLKPE-HMEAFSHVSSDCRT-QYYCTEVQKQASSSANKTRVRNHRYAALRALQKEGQYFSEEQMRFREPLLYEQYIGQYLSEEEILKRSEESMQKGPTGLSDLLINS-------YQEKELQKRLQEEQDRENCADQ-------EEEDGEEEPTHADWEPTAEEKALLREEFLSQMHQRFLEGKDKEFNYSEVDENPDYDNLDILSRDAEEKYFD 300
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Cavefish
Match: ccdc97 (coiled-coil domain containing 97 [Source:NCBI gene;Acc:103036659])

HSP 1 Score: 108.612 bits (270), Expect = 1.023e-26
Identity = 77/268 (28.73%), Postives = 137/268 (51.12%), Query Frame = 1 
Query:   97 TCNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYG----NPVNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKE----QEEKLGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCXXXXXXXXXXXXXXXXXXNFKCTLDDKRFLEDEFLSIMKYKFLNGDD-DYNYSEVDNDSTLDDLEEITRDLEDRYF 873
            +C +  M   ++ +   + +    + D +    K  V+   +E  P +FLE+Y+ ++  E H   F +L++D ++  +Y  +++       N   V+N RY  L  L +EG+YFS EQM+ R+PLLY +YIG  LS++E     E+ + +     S  L+++   ++ + R  E+  +E+ + E      N                    ++ + ++K  L +EFLS M  +FL+G D D+NYSEVD +   D+L+ + RD E+RYF
Sbjct:   58 SCGLSAMIEAIASSGSPVKSQQLGEPD-LSVEEKKKVLLEQYETKPLVFLERYHAHMQPE-HLEAFSHLSSDCRA-QYYCTEVQKRASCSSNRTRVRNHRYAALRALQKEGQYFSEEQMRFREPLLYEQYIGQYLSDEEILQRSEQAMQQGPACLSDLLISSYQEKQLQNRLQEEQDREQCAEEEEEEETNA--------------SRQAEWEPSAEEKAMLREEFLSQMHQRFLDGKDRDFNYSEVDENPDYDNLDILNRDAEERYF 308
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Cavefish
Match: ccdc97 (coiled-coil domain containing 97 [Source:NCBI gene;Acc:103036659])

HSP 1 Score: 108.612 bits (270), Expect = 1.023e-26
Identity = 77/268 (28.73%), Postives = 137/268 (51.12%), Query Frame = 1 
Query:   97 TCNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYG----NPVNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKE----QEEKLGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCXXXXXXXXXXXXXXXXXXNFKCTLDDKRFLEDEFLSIMKYKFLNGDD-DYNYSEVDNDSTLDDLEEITRDLEDRYF 873
            +C +  M   ++ +   + +    + D +    K  V+   +E  P +FLE+Y+ ++  E H   F +L++D ++  +Y  +++       N   V+N RY  L  L +EG+YFS EQM+ R+PLLY +YIG  LS++E     E+ + +     S  L+++   ++ + R  E+  +E+ + E      N                    ++ + ++K  L +EFLS M  +FL+G D D+NYSEVD +   D+L+ + RD E+RYF
Sbjct:   58 SCGLSAMIEAIASSGSPVKSQQLGEPD-LSVEEKKKVLLEQYETKPLVFLERYHAHMQPE-HLEAFSHLSSDCRA-QYYCTEVQKRASCSSNRTRVRNHRYAALRALQKEGQYFSEEQMRFREPLLYEQYIGQYLSDEEILQRSEQAMQQGPACLSDLLISSYQEKQLQNRLQEEQDREQCAEEEEEEETNA--------------SRQAEWEPSAEEKAMLREEFLSQMHQRFLDGKDRDFNYSEVDENPDYDNLDILNRDAEERYF 308
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Cavefish
Match: ccdc97 (coiled-coil domain containing 97 [Source:NCBI gene;Acc:103036659])

HSP 1 Score: 108.612 bits (270), Expect = 1.023e-26
Identity = 77/268 (28.73%), Postives = 137/268 (51.12%), Query Frame = 1 
Query:   97 TCNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYG----NPVNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKE----QEEKLGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCXXXXXXXXXXXXXXXXXXNFKCTLDDKRFLEDEFLSIMKYKFLNGDD-DYNYSEVDNDSTLDDLEEITRDLEDRYF 873
            +C +  M   ++ +   + +    + D +    K  V+   +E  P +FLE+Y+ ++  E H   F +L++D ++  +Y  +++       N   V+N RY  L  L +EG+YFS EQM+ R+PLLY +YIG  LS++E     E+ + +     S  L+++   ++ + R  E+  +E+ + E      N                    ++ + ++K  L +EFLS M  +FL+G D D+NYSEVD +   D+L+ + RD E+RYF
Sbjct:   58 SCGLSAMIEAIASSGSPVKSQQLGEPD-LSVEEKKKVLLEQYETKPLVFLERYHAHMQPE-HLEAFSHLSSDCRA-QYYCTEVQKRASCSSNRTRVRNHRYAALRALQKEGQYFSEEQMRFREPLLYEQYIGQYLSDEEILQRSEQAMQQGPACLSDLLISSYQEKQLQNRLQEEQDREQCAEEEEEEETNA--------------SRQAEWEPSAEEKAMLREEFLSQMHQRFLDGKDRDFNYSEVDENPDYDNLDILNRDAEERYF 308
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Sea Lamprey
Match: ccdc97 (coiled-coil domain containing 97 [Source:ZFIN;Acc:ZDB-GENE-131127-366])

HSP 1 Score: 85.8853 bits (211), Expect = 9.850e-20
Identity = 68/253 (26.88%), Postives = 129/253 (50.99%), Query Frame = 1 
Query:  160 NNSKTDP-MDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNP---VNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQEEKLGR------CYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCXXXXXXXXXXXXXXXXXXN--FKCTLDDKRFLEDEFLSIMKYKFLNG-DDDYNYSEVDNDSTLDDLEEITRDLEDRYFEE 879
            +  + DP +   +K  +++  + + P+ FLE+Y++ L+    G   H    D   V FYL+ ++          ++N+R+  L  L+  G+YFS E M+ R PLLY + IG  LS   +EE L R        +S +  L++          +  +L++  +  +++      + E+  ++ +    E   N  +     ++  L++EF+S M  +FL+G D D++YS VD+++  D+L+ + +D EDRYF+E
Sbjct:   17 SQQRGDPDLSAEDKVTLLRELWAEQPARFLERYHEALSVRDLGCFEHVTEEDAYLVNFYLEAVRKRTEQRAGTAIRNKRFAALRELVNAGEYFSEECMRARDPLLYEQCIGRFLS---EEEVLARRSIATGTPESLADVLID--------VHQEVELRRRLQQQQDAEDDMEEEEEDSDDENDMDQREARPNQAWAPFSKERALLKEEFVSRMYRRFLDGHDQDFDYSSVDDNADYDNLDIVEQDEEDRYFDE 258
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Sea Lamprey
Match: ccdc97 (coiled-coil domain containing 97 [Source:ZFIN;Acc:ZDB-GENE-131127-366])

HSP 1 Score: 67.781 bits (164), Expect = 2.482e-13
Identity = 39/125 (31.20%), Postives = 65/125 (52.00%), Query Frame = 1 
Query:  160 NNSKTDP-MDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNP---VNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQEEKLGR 522
            +  + DP +   +K  +++  + + P+ FLE+Y++ L+    G   H    D   V FYL+ ++          ++N+R+  L  L+  G+YFS E M+ R PLLY + IG  LS   +EE L R
Sbjct:    2 SQQRGDPDLSAEDKVTLLRELWAEQPARFLERYHEALSVRDLGCFEHVTEEDAYLVNFYLEAVRKRTEQRAGTAIRNKRFAALRELVNAGEYFSEECMRARDPLLYEQCIGRFLS---EEEVLAR 123
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Nematostella
Match: EDO48482 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RIY8])

HSP 1 Score: 64.3142 bits (155), Expect = 8.002e-12
Identity = 73/280 (26.07%), Postives = 133/280 (47.50%), Query Frame = 1 
Query:   88 IDLTCNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYL---NYETHGGIFHNLATDDKSVAFYLDKLKNY----GNPVNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQEEKLGRCYDSFSG-FLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDN-----CXXXXXXXXXXXXXXXXXXNFKCTLDDKRFLEDEFLSIMKYKFLNG-DDDYNYSEVDNDSTLDDLEEITRDLEDRYFEEED 885
            ++   N D+MF  + +N  +           +    K  +++   + +P+ FL ++ + L   + E    ++      +  + F L ++K +     + V V+NRRY+ +  LI +  +FS E+M+ R PLLY +YIG  L+   +EEKL R      G   ++ ++F              +   E +  I N         EE E++ E   E+      T ++K  L +EF   M+ KFL G +++++YS VD +   DDL+   +D E+RYF+++D
Sbjct:    9 VECGGNDDDMFLRI-VNSGVTIKSQQRDEPDLSSEQKIKILEEIKKTNPASFLMRFGQSLVTKDLEYFESLYKQNTLTNYEIGFRLKEIKKHLDQQKHHVEVQNRRYEAMQRLINDSTFFSEEEMRKRNPLLYEQYIGQYLT---EEEKLERDIAEREGEPSLSQLMFS-------------KYDAEKTQWIYNYQREQEREMEEEEEDSEEEMEEDSQGTPTEEEKEMLRNEFFYEMQEKFLLGKEEEFDYSTVDMNDEYDDLKLREQDEEERYFDDDD 271
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Medaka
Match: ccdc97 (coiled-coil domain containing 97 [Source:NCBI gene;Acc:101168216])

HSP 1 Score: 91.2781 bits (225), Expect = 2.113e-20
Identity = 72/232 (31.03%), Postives = 120/232 (51.72%), Query Frame = 1 
Query:  220 FEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYG----NPVNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQEEK---------------LGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCXXXXXXXXXXXXXXXXXXNFKCTLDDKRFLEDEFLSIMKYKFLNG-DDDYNYSEVDNDSTLDDLEEITRD 855
            F   P +FLE+Y+ YL  E H  +F ++++D ++   Y + ++       +   V+N RY  L  L +EGKYFS E+M+ R+PLLY +YIG  L++ E  E+                G      +  L+N+   R  + R  E+ ++E+ +             +E E++EE  D     ++ T ++K  L +EF+S M  +FL+G D D+NYSEVD +   D+L+ + RD
Sbjct:   95 FRSRPLVFLERYHAYLKPE-HLPVFSHVSSDPRA-QHYSNVVRTRAACCTSRTRVRNHRYAALRALQKEGKYFSEEEMRRREPLLYEQYIGQYLTDDEVIERSHEAMSDGADEGQGAPGSGTGGLANLLLNSYQERLIQSRLQEEQEREDGA-------------QEEEEDEEDDDTQQKEWEPTDEEKALLREEFVSQMHQRFLDGKDKDFNYSEVDENPEYDNLDIVNRD 311
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Planmine SMEST
Match: SMESG000051339.1 (SMESG000051339.1)

HSP 1 Score: 562.377 bits (1448), Expect = 0.000e+0
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 1 
Query:   82 MEIDLTCNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNPVNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQEEKLGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCXXXXXXXXXXXXXXXXXXNFKCTLDDKRFLEDEFLSIMKYKFLNGDDDYNYSEVDNDSTLDDLEEITRDLEDRYFEEEDATESHSAQPMEDCDDGDFIEYKARDKLNKYLSQ 984
            MEIDLTCNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNPVNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQEEKLGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCDSEEEMEDEEEVSDEDGDNFKCTLDDKRFLEDEFLSIMKYKFLNGDDDYNYSEVDNDSTLDDLEEITRDLEDRYFEEEDATESHSAQPMEDCDDGDFIEYKARDKLNKYLSQ
Sbjct:    1 MEIDLTCNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNPVNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQEEKLGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCDSEEEMEDEEEVSDEDGDNFKCTLDDKRFLEDEFLSIMKYKFLNGDDDYNYSEVDNDSTLDDLEEITRDLEDRYFEEEDATESHSAQPMEDCDDGDFIEYKARDKLNKYLSQ 301
[Close]
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Planmine SMEST
Match: SMESG000051339.1 (SMESG000051339.1)

HSP 1 Score: 384.8 bits (987), Expect = 1.134e-135
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 
Query:   82 MEIDLTCNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNPVNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQEEKLGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNC 648
            MEIDLTCNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNPVNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQEEKLGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNC
Sbjct:    1 MEIDLTCNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKSPSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNPVNVKNRRYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQEEKLGRCYDSFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNC 189
The following BLAST results are available for this feature:
BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CCDC971.094e-827.86coiled-coil domain containing 97 [Source:HGNC Symb... [more]
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BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
R10D12.139.750e-732.08pep chromosome:WBcel235:V:13962417:13963840:1 gene... [more]
R10D12.132.159e-631.48pep chromosome:WBcel235:V:13962417:13963840:1 gene... [more]
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BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CG78102.935e-2027.36gene:FBgn0032017 transcript:FBtr0079612[more]
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BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ccdc971.732e-2231.70coiled-coil domain containing 97 [Source:ZFIN;Acc:... [more]
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BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
a1cf5.588e-1531.95APOBEC1 complementation factor [Source:Xenbase;Acc... [more]
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BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Ccdc974.122e-1827.46coiled-coil domain containing 97 [Source:MGI Symbo... [more]
Ccdc975.447e-1029.63coiled-coil domain containing 97 [Source:MGI Symbo... [more]
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BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 2
Match NameE-valueIdentityDescription
sp|Q9DBT3|CCD97_MOUSE2.883e-1727.46Coiled-coil domain-containing protein 97 OS=Mus mu... [more]
sp|Q96F63|CCD97_HUMAN5.255e-827.86Coiled-coil domain-containing protein 97 OS=Homo s... [more]
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BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
K7F5551.076e-2634.76Coiled-coil domain containing 97 OS=Pelodiscus sin... [more]
A0A4W3HBD46.873e-2632.74DUF2052 domain-containing protein OS=Callorhinchus... [more]
V9KY838.432e-2632.74Coiled-coil domain-containing protein 97-like prot... [more]
A0A0P7VRD36.717e-2532.96Coiled-coil domain-containing protein 97-like OS=S... [more]
A0A2D0S2P48.221e-2531.78adenylate cyclase type 2-like isoform X5 OS=Ictalu... [more]
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BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
ccdc971.023e-2628.73coiled-coil domain containing 97 [Source:NCBI gene... [more]
ccdc971.023e-2628.73coiled-coil domain containing 97 [Source:NCBI gene... [more]
ccdc971.023e-2628.73coiled-coil domain containing 97 [Source:NCBI gene... [more]
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BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ccdc979.850e-2026.88coiled-coil domain containing 97 [Source:ZFIN;Acc:... [more]
ccdc972.482e-1331.20coiled-coil domain containing 97 [Source:ZFIN;Acc:... [more]
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BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO484828.002e-1226.07Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ccdc972.113e-2031.03coiled-coil domain containing 97 [Source:NCBI gene... [more]
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BLAST of Heterogeneous nuclear ribonucleoprotein U-like protein 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000051339.10.000e+0100.00SMESG000051339.1[more]
SMESG000051339.11.134e-135100.00SMESG000051339.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30034534 ID=SMED30034534|Name=Heterogeneous nuclear ribonucleoprotein U-like protein 1|organism=Schmidtea mediterranea sexual|type=transcript|length=1034bp
TTTTTTTAAATTTGTAAATCAGTATTGAATTAAATTTTTTAGTACAAGTT
TCTAGTAATTTTTATATTCCTCTATTTTAAAATGGAAATCGATTTAACCT
GTAATGTCGATGAAATGTTTCATAATTTAAGCTTAAATGAAAAAATTATT
TTTAATTTGAACAATTCTAAAACCGATCCAATGGATTGTTCCAACAAATA
CGATGTTATTAAAGCATCATTCGAAAAATCACCATCGTTATTTTTGGAAA
AATATTATAAATACTTAAATTACGAAACTCACGGCGGTATTTTCCACAAT
TTGGCTACTGATGATAAATCTGTAGCCTTTTATTTGGATAAGCTTAAAAA
TTACGGTAATCCAGTAAATGTTAAAAATCGGCGATACAAAAAGTTATCGA
ACTTAATCGAAGAGGGAAAGTATTTTAGTCATGAACAAATGAAAAATAGA
CAGCCCTTATTATATTCAAGATATATTGGAAATGTTTTATCAAATAAAGA
ACAGGAAGAAAAACTCGGTCGATGTTATGATTCATTCAGTGGATTTTTAA
TGAATAATATGCTTTTCCGCGAAGACAGATTTCGTAAAAATGAAGATTTA
AAAAAAGAAGAAAAATCTCTCGAAAATTCTAACTGCATAGACAATTGTGA
TTCCGAAGAAGAGATGGAAGATGAAGAGGAAGTGAGTGATGAAGATGGAG
ATAACTTTAAATGTACTTTGGATGACAAACGTTTTCTAGAAGATGAATTC
TTATCGATTATGAAGTATAAATTCCTCAATGGTGATGATGACTATAATTA
TAGTGAGGTGGATAATGATTCGACATTGGATGATTTAGAAGAAATAACCA
GAGATTTAGAGGACAGATATTTTGAGGAAGAAGATGCGACAGAGTCGCAT
TCAGCACAACCAATGGAGGATTGTGATGATGGAGATTTCATTGAATATAA
GGCTCGGGATAAACTGAATAAATATCTGTCTCAGTGATTATTTATTTCAA
TTAATGCCGATGTTGCTGTGCTTGTGGTTGTGAT
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protein sequence of SMED30034534-orf-1

>SMED30034534-orf-1 ID=SMED30034534-orf-1|Name=SMED30034534-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=302bp
MEIDLTCNVDEMFHNLSLNEKIIFNLNNSKTDPMDCSNKYDVIKASFEKS
PSLFLEKYYKYLNYETHGGIFHNLATDDKSVAFYLDKLKNYGNPVNVKNR
RYKKLSNLIEEGKYFSHEQMKNRQPLLYSRYIGNVLSNKEQEEKLGRCYD
SFSGFLMNNMLFREDRFRKNEDLKKEEKSLENSNCIDNCDSEEEMEDEEE
VSDEDGDNFKCTLDDKRFLEDEFLSIMKYKFLNGDDDYNYSEVDNDSTLD
DLEEITRDLEDRYFEEEDATESHSAQPMEDCDDGDFIEYKARDKLNKYLS
Q*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: biological process
TermDefinition
GO:0006396RNA processing
GO:0009615response to virus
GO:0008150biological_process
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR040233DUF2052
IPR018613Ccdc97-like
Vocabulary: molecular function
TermDefinition
GO:0003674molecular_function
Vocabulary: cellular component
TermDefinition
GO:0005686U2 snRNP
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 249..269
IPR040233Domain of unknown function DUF2052PFAMPF09747DUF2052coord: 99..267
e-value: 8.3E-28
score: 97.9
IPR018613Ccdc97-likePANTHERPTHR31840FAMILY NOT NAMEDcoord: 8..272