Rho_N domain-containing protein

Overview
NameRho_N domain-containing protein
Smed IDSMED30034526
Length (bp)6305
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Rho_N domain-containing protein (SMED30034526) t-SNE clustered cells

Violin plots show distribution of expression levels for Rho_N domain-containing protein (SMED30034526) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Rho_N domain-containing protein (SMED30034526) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Rho_N domain-containing protein (SMED30034526) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30034526

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
posterior sideSMED30034526h1SMcG0010965 dd_Smed_v4_2856_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior muscle cellSMED30034526h1SMcG0010965 dd_Smed_v4_2856_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30034526h1SMcG0010965 dd_Smed_v4_13631_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Rho_N domain-containing protein vs. Ensembl Celegans
Match: ZC53.4 (pep chromosome:WBcel235:X:1925750:1937689:1 gene:WBGene00022511.1 transcript:ZC53.4.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZC53.4)

HSP 1 Score: 46.2098 bits (108), Expect = 6.161e-8
Identity = 27/70 (38.57%), Postives = 36/70 (51.43%), Query Frame = 1 
Query: 5251 GPTHNLCNLRATKRNFVPIYFHNGSGYDNHLIFLALAP---------NVTKIIPITYERYISFSVGTMRF 5433
            GP    CN+   K NF+P++FHN  GYD+HLI   L            + KI   T E++ISFS    +F
Sbjct: 1004 GPFCGSCNILRRKNNFIPVFFHNLKGYDSHLIVGCLESTKYLNEHEIEIEKISSNT-EKFISFSYNPHQF 1072

HSP 2 Score: 31.9574 bits (71), Expect = 6.161e-8
Identity = 28/86 (32.56%), Postives = 45/86 (52.33%), Query Frame = 2 
Query: 5006 HLMKSHYLEYFGEHAVLRFAETINNLSGEFKNLLKVEYSIDISKEQREEYNKATCCYYCEKKST*EDY---KVMEHDNLFENDYRG 5254
            H MKS    Y G +A L F + I  +S E  +L  V     +++++  E+NK   C +C+ +   ED    KV +HD+ +  +YRG
Sbjct:  925 HNMKS----YIGYNATLEFNKYIIKISQEIMSLPSVRMK-KLTQDEWTEFNKNQECPHCQVQYNTEDMKTTKVRDHDH-WTGEYRG 1004
[Close]
BLAST of Rho_N domain-containing protein vs. TrEMBL
Match: A0A533V7R8 (Uncharacterized protein (Fragment) OS=Thaumarchaeota archaeon OX=2026795 GN=E6K97_05330 PE=4 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.580e-38
Identity = 114/389 (29.31%), Postives = 180/389 (46.27%), Query Frame = 2 
Query: 4235 YLNGRVFDEEIEVSGWVFKEFTQISLNICQYKSRFGGTYIKLHFKPNVILNIQNKVNRCFIYSILVYLHPQATTQHPYRPRPYKKYEHELNLEGIDFLIDFNGIKKLCIQNPGIKINVLG--------NNENKRLSITYKSHLDWKG*NL-LLY----------KDHCILCKNVAVFLGNSTYHDFYPCLNCLASFRVENALKTHQELCIQHKEA--VATFHRDEYKEFTNFHQKNKVPFVFGADFEYWN-------KHEGKENKR*EIEQKVFCYGIYIKSNYTHLMKSHYLEYFG---EHAVLRFAETINNLSGEFKNLLKVEYSID--------------ISKEQREEYNKATCCYYCEKKST*ED----YKVMEHDNLFENDYRG 5254
            YL   + + E   S  VF+  +Q+ ++I + +   G +YI   +  + +LN++N+ NRCF  SIL +LHP    +HP RP  Y  +  ELNL+GI+  +  + IKK   QNP I +NV G          +N  ++    S  + +  N+ L+Y            H  L K    F      H  + C  CL S     AL+ H ++C +HKE   V     +   +F  +  K+++PF+  ADFE  N         + K  +  +  Q+  CY  YI S+Y  +++S Y  + G   E  V  F + I  L+ E    L+  +  D              +S E++ EY+ AT C+YCE+  + E+     KV++H N F   YRG
Sbjct:  180 YLRTWIQEREEGESDLVFQSISQVQISIVRIEILGGSSYIPFPYNCHTVLNVKNEDNRCFPLSILAHLHPVGGKEHPNRPSKYLPFMDELNLDGIEMPVKLDDIKKFERQNPSIAVNVFGLEHRGHGSGRDNFSITPLRISKEENREHNIDLVYLCGESDDDEVNAHYCLIKYFDSFASGKNDHK-HVCRRCLNSNASAEALENHMKICKKHKECRIVMPDETNNKLKFMKYVMKSRLPFMGVADFEALNVPIQSASPDDKKPYQEKKTHQRASCYATYIHSDYEKIVESKYSLFRGKTTEENVKHFVDYIIGLNKEMYGKLRPCHKYDKASKKYIYTSNLLPLSPEEQNEYDNATKCFYCEEILSTEENSSKLKVLDH-NHFTGRYRG 566

HSP 2 Score: 57.3806 bits (137), Expect = 2.580e-38
Identity = 41/127 (32.28%), Postives = 56/127 (44.09%), Query Frame = 1 
Query: 5251 GPTHNLCNLRATKR-NFVPIYFHNGSGYDNHLIFLALAPNVT------KIIPITYERYISFSVGTMRFLDSYLLMPSSLDYLGSLLKPEECEIYNKYFTIRVRKGSNFTLKLWIKRMKRNYRRNKLK 5610
            G + + CN+R  K   FVP +FHN  GYD  +    LA          KI+    + YISF  G +RFLDS      SLD +   L+ E+ +I  K  +        F  +  I + K     NK K
Sbjct:  566 GASCSDCNIREGKATKFVPFFFHNLKGYDARMFIKELAKQSDSKFQKLKILAKNEQDYISFQFGCIRFLDSLAFFAESLDNVVKSLQDEDLKITKKVLS------QEFDERNGIAKSKEECDANKEK 686
[Close]
BLAST of Rho_N domain-containing protein vs. TrEMBL
Match: A0A026WBS9 (Uncharacterized protein OS=Ooceraea biroi OX=2015173 GN=X777_07025 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.503e-32
Identity = 95/353 (26.91%), Postives = 158/353 (44.76%), Query Frame = 2 
Query: 4274 SGWVFKEFTQISLNICQYKSRFGGTYIKLHFK---PNVILNIQNKVNRCFIYSILVYLHPQATTQHPYRPRPYKKYEHELNLEGIDFLIDFNGIKKLCIQNPGIKINVLGNNENKR----------LSITYKSHLDWKG*NLLLYKD-------HCILCKNVAVFLGNS---TYHDFYPCLNCLASFRVENALKTHQELCIQHKEAVATF--HRDEYKEFTNFHQKNKVPFVFGADFEYWNKHEGKENKR*EIEQKVFCYGIYIKSNYTHLMKSHYLEYFGEHAVLRFAETINNLSGEFKNLLKVEYS-IDISKEQREEYNKATCCYYCEKKST*EDYKVMEHDNLFENDYRG 5254
            SGW       +++N+ ++     G  IKL  +      ++N+Q+K N CF +S++  LHP    +H  R   Y  Y   LNL+GI   +    IKK  + N  I INV    E K+          + I        K  NLL  +D       H    KN++  + +      H  Y C  CL  F     L+ H   C +  +         D++  FTNF++K ++PFV  AD E     +  +N +     +VF    Y++ NY   + S Y  +     ++ F E + +L+   K +L      +++++++RE++N +T C+ CEK    +D +V +H +L    YRG
Sbjct:  288 SGWALSRILNLTINVNRHNPMHAGCQIKLPEEIKLKKAVVNVQSKDNACFAWSVVAALHP--AEEHVDRSSSYPHYTTVLNLKGIKLSMSLKQIKKFELLN-DISINVYAAQEKKKKKKEKEKLMIVPIRLADEKKCKHVNLLYIQDPQDNNVGHFTYIKNLSRLVSSQLSKKMHKKYICDRCLHYFHTNEKLEAHTADCQRLNDCAIILPNEEDKWLSFTNFNRKERIPFVVYADLECI-LQKTDDNPKLYQRHQVFSIAYYVRCNYDASL-SGYRSHRDTDCIVWFIEQLKDLAHRVKVILSRNVPMVELTRDEREKFNSSTHCHICEKPFASDDTRVYDHCHL-TGRYRG 634

HSP 2 Score: 61.6178 bits (148), Expect = 7.503e-32
Identity = 37/108 (34.26%), Postives = 50/108 (46.30%), Query Frame = 1 
Query: 5251 GPTHNLCNLRATKRNFVPIYFHNGSGYDNHLIFLALA---PNVTKIIPITYERYISFSVG-------------TMRFLDSYLLMPSSLDYLGSLLKPEECEIYNKYFT 5526
            GP H+ CNL       +PI FHN SGYD H I   +A        ++PI  E+YISF+                +RF++S   + SSLD L S L  ++  I    F 
Sbjct:  634 GPAHSNCNLNYKDSYIIPIVFHNLSGYDAHFIIKEIATAFEGAIDVLPINKEKYISFTKHVNESDDKKWHNHVQLRFINSLKFLNSSLDKLSSFLSKDKLRIVRSEFA 741
[Close]
BLAST of Rho_N domain-containing protein vs. TrEMBL
Match: A0A2L2YHS0 (Uncharacterized protein (Fragment) OS=Parasteatoda tepidariorum OX=114398 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 7.922e-32
Identity = 109/390 (27.95%), Postives = 169/390 (43.33%), Query Frame = 2 
Query: 4172 ETKNMIMMIISIL--FQGVILLRYLNGRVFDEEIEVSGWVFKEFTQISLNICQYKSRFGGTYIKLHFKPNVI------LNIQNKVNRCFIYSILVYLHPQATTQHPYRPRPYKKYEHELNLEGIDFLIDFNGIKKLCIQNPGIKINVLGNNE-NKRLSITYKSHLDWKG*NLLLYK----DHCILCKNVAVFLGN--STYHDF-YPCLNCLASFRVENALKTHQELCIQHKEAVATFHRDEYKEFTNFHQKNKVPFVFGADFEYWNK-------HEGKE--NKR*EIEQKVFCYGIYIKSNYTHLMKSHYLEYFGEHAVLRFAETINN----LSGEFKNLLKVEYSIDISKEQREEYNKATCCYYCEKKST*EDYKVMEHDNLFENDYRG 5254
            +TKN  +++ + L  F   I+ + L     D E + SGW   E     + I +Y       +I L   P VI      +N++N  N CF ++IL  LHP+ T  +P R   YK + + LN   I F +    +KK    N  I INV G  E N    +        +  +LL  K     H    KN++  L    S +H   + C  CL  F  +  L  H+  C QH+        D++  F N      VPFV  ADFE   K         G     K  + E   FCY +        L K  Y+ Y G+ A   F E +      +  ++ N L ++    ++++Q ++Y  AT CY C+ + + E+YKV +H ++ + ++RG
Sbjct:   70 KTKNTPILLSTDLEEFYSSIMSKLLT-EAEDFEKKDSGWSLDEIIAFEIRINKYDPLRASGFIPL---PPVISKRLAVVNVKNNDNECFKWAILSALHPKQT--NPCRMSNYKSFANTLNFSNIPFPVKLQDVKKFEKLN-DISINVYGLTEKNSVFPLIITEEEKTQHVDLLFLKTETDSHFCWIKNLSRLLSPQYSQHHGRKFICRRCLQFFTSDAILTRHKISCNQHETVRVKMPTDKWLRFKNVKHTQPVPFVIYADFESLLKPIDSCGPSSGASFTEKYQKHEPISFCYYV---CGIAGLSKPPYV-YRGKDAAKIFMEKMREEALIIHEKYNNPLPMK---SLTEKQTQQYESATNCYVCDSEFSVENYKVKDHCHVTQ-EFRG 444

HSP 2 Score: 75.0998 bits (183), Expect = 7.922e-32
Identity = 46/110 (41.82%), Postives = 61/110 (55.45%), Query Frame = 1 
Query: 5251 GPTHNLCNLRATKRNFVPIYFHNGSGYDNHLIFLALAPNVTKI--IPITYERYISFSVGT-----MRFLDSYLLMPSSLDYLGSLLKPEECEIYNKYFT-----IRVRKG 5544
            G + N CN++    NF+P+ FHN SGYD+HL    L  N   I  IP   E+YISFS        +RF+DSY  M SSLD L   L P++    NK+F+     + +RKG
Sbjct:  444 GASCNNCNMQTKVPNFIPVIFHNLSGYDSHLFIKELGKNEENINVIPENTEKYISFSEYVSGKIFLRFIDSYRFMASSLDQLARNLTPDQFLNMNKFFSSSEVPLVLRKG 553
[Close]
BLAST of Rho_N domain-containing protein vs. TrEMBL
Match: A0A2L2YHT1 (Uncharacterized protein (Fragment) OS=Parasteatoda tepidariorum OX=114398 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 8.256e-32
Identity = 109/390 (27.95%), Postives = 169/390 (43.33%), Query Frame = 2 
Query: 4172 ETKNMIMMIISIL--FQGVILLRYLNGRVFDEEIEVSGWVFKEFTQISLNICQYKSRFGGTYIKLHFKPNVI------LNIQNKVNRCFIYSILVYLHPQATTQHPYRPRPYKKYEHELNLEGIDFLIDFNGIKKLCIQNPGIKINVLGNNE-NKRLSITYKSHLDWKG*NLLLYK----DHCILCKNVAVFLGN--STYHDF-YPCLNCLASFRVENALKTHQELCIQHKEAVATFHRDEYKEFTNFHQKNKVPFVFGADFEYWNK-------HEGKE--NKR*EIEQKVFCYGIYIKSNYTHLMKSHYLEYFGEHAVLRFAETINN----LSGEFKNLLKVEYSIDISKEQREEYNKATCCYYCEKKST*EDYKVMEHDNLFENDYRG 5254
            +TKN  +++ + L  F   I+ + L     D E + SGW   E     + I +Y       +I L   P VI      +N++N  N CF ++IL  LHP+ T  +P R   YK + + LN   I F +    +KK    N  I INV G  E N    +        +  +LL  K     H    KN++  L    S +H   + C  CL  F  +  L  H+  C QH+        D++  F N      VPFV  ADFE   K         G     K  + E   FCY +        L K  Y+ Y G+ A   F E +      +  ++ N L ++    ++++Q ++Y  AT CY C+ + + E+YKV +H ++ + ++RG
Sbjct:   70 KTKNTPILLSTDLEEFYSSIMSKLLT-EAEDFEKKDSGWSLDEIIAFEIRINKYDPLRASGFIPL---PPVISKRLAVVNVKNNDNECFKWAILSALHPKQT--NPCRMSNYKSFANTLNFSNIPFPVKLQDVKKFEKLN-DISINVYGLTEKNSVFPLIITEEEKTQHVDLLFLKTETDSHFCWIKNLSRLLSPQYSQHHGRKFICRRCLQFFTSDAILTRHKISCNQHETVRVKMPTDKWLRFKNVKHTQPVPFVIYADFESLLKPIDSCGPSSGASFTEKYQKHEPISFCYYV---CGIAGLSKPPYV-YRGKDAAKIFMEKMREEALIIHEKYNNPLPMK---SLTEKQTQQYESATNCYVCDSEFSVENYKVKDHCHVTQ-EFRG 444

HSP 2 Score: 75.0998 bits (183), Expect = 8.256e-32
Identity = 46/110 (41.82%), Postives = 61/110 (55.45%), Query Frame = 1 
Query: 5251 GPTHNLCNLRATKRNFVPIYFHNGSGYDNHLIFLALAPNVTKI--IPITYERYISFSVGT-----MRFLDSYLLMPSSLDYLGSLLKPEECEIYNKYFT-----IRVRKG 5544
            G + N CN++    NF+P+ FHN SGYD+HL    L  N   I  IP   E+YISFS        +RF+DSY  M SSLD L   L P++    NK+F+     + +RKG
Sbjct:  444 GASCNNCNMQTKVPNFIPVIFHNLSGYDSHLFIKELGKNEENINVIPENTEKYISFSEYVSGKIFLRFIDSYRFMASSLDQLARNLTPDQFLNMNKFFSSSEVPLVLRKG 553
[Close]
BLAST of Rho_N domain-containing protein vs. TrEMBL
Match: A0A3L8D6Z4 (Uncharacterized protein OS=Ooceraea biroi OX=2015173 GN=DMN91_012007 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.131e-30
Identity = 89/344 (25.87%), Postives = 157/344 (45.64%), Query Frame = 2 
Query: 4274 SGWVFKEFTQISLNICQYKSRFGGTYIKLHFK---PNVILNIQNKVNRCFIYSILVYLHPQATTQHPYRPRPYKKYEHELNLEGIDFLIDFNGIKKLCIQNPGIKINV-----LGNNENKRLSITYKSHLDWKG*---NLLLYKD-------HCILCKNVAVFLGNSTYH---DFYPCLNCLASFRVENALKTHQELCIQHKEAVATF--HRDEYKEFTNFHQKNKVPFVFGADFEYWNKHEGKENKR*EIEQKVFCYGIYIKSNYTHLMKSHYLEYFGEHAVLRFAETINNLSGEFKNLLKVEYS-IDISKEQREEYNKATCCYYCEKKST*EDYKVMEHDNL 5233
            SGW       +++N+ +Y     G  IK+  +      ++N+Q+K N CF +S++  L+P    +H  RP  Y  Y   LNL+GI+F +    IKK+ + N  I +NV         + ++L+I      D K     NLL   D       H    KN++  + +         Y C  CL  F     L+ H   C Q  +         D++  FTN+++K ++PFV   D E   +   +++ +     +V   G Y++ NY   + S Y        +  F E + +L+   K++L      +++++++ E++N AT C+ CEK    +D +V +H +L
Sbjct:  199 SGWALSRILNLTINVNRYNPMHAGCQIKIPEEIKLKKAVVNMQSKDNACFTWSVVTALYP--AKEHVDRPSSYPHYTMVLNLQGIEFPVSLKQIKKIELLN-DISVNVYTIQAKKKKKEEKLTIVLIRLADEKKCTHVNLLYMPDPQDNNVGHFACIKNLSRLVSSQLSKKNGQKYMCDRCLHYFHTNEKLEAHTGDCQQMNDCAIILPNEEDKWLSFTNYNRKERIPFVVYDDLECILQKTEEDDPKLYQRHQVSSIGYYVRCNYDASL-SGYRSRRDTDCIAWFVEQLKDLAHRVKSILSRNVPMVELTQDECEKFNSATHCHICEKPFASDDTRVRDHSHL 538

HSP 2 Score: 58.5362 bits (140), Expect = 2.131e-30
Identity = 37/108 (34.26%), Postives = 49/108 (45.37%), Query Frame = 1 
Query: 5254 PTHNLCNLRATKRNFVPIYFHNGSGYDNHLIFLALA---PNVTKIIPITYERYISFSVG--------------TMRFLDSYLLMPSSLDYLGSLLKPEECEIYNKYFT 5526
            P H  CNL       +PI FHN SGYD+H I   +A        ++PI  E+YISF+                 +RF+DS   + SSLD L S L  ++  I    F 
Sbjct:  545 PAHANCNLNYKDSYTIPIVFHNFSGYDSHFIIKEIATAFEGNVDVLPINKEKYISFTKHVNESDDDKKYRNHVQLRFIDSLRFLNSSLDKLSSFLNKDKLRIVRSEFA 652
[Close]
BLAST of Rho_N domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000030217.1 (pep primary_assembly:Astyanax_mexicanus-2.0:16:12351169:12363564:1 gene:ENSAMXG00000035335.1 transcript:ENSAMXT00000030217.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 51.9878 bits (123), Expect = 9.581e-6
Identity = 37/120 (30.83%), Postives = 63/120 (52.50%), Query Frame = -2 
Query:  995 VFSVLDLSNGFYNF*LKEVDKEKTIWI*Q----NVDRTVY----STGYFSKIDGYDF*KEKREQCLIYIDNVLIYGGTYEQQLGRVRAVLGRLPNQVKQFKSETHNFLL-QVLYLRHGIS 1327
            +FS LDL++G+    + E DK+KT +         +R  +    +   F ++    F  E+ +  L+Y+D+++I+  T++  L R++ VLGRL     + K E  NF   +V YL H IS
Sbjct:  418 LFSTLDLTSGYNQVPMAEEDKQKTAFCTPFGLFEFNRMPFGLCNAPSTFQRLMERVFGDERFQSLLLYLDDIVIFSSTFDSHLERLQMVLGRLQQHNLKLKLEKCNFFQNEVRYLGHVIS 537
[Close]
BLAST of Rho_N domain-containing protein vs. Ensembl Nematostella
Match: EDO46109 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RR56])

HSP 1 Score: 86.6557 bits (213), Expect = 6.327e-29
Identity = 91/356 (25.56%), Postives = 157/356 (44.10%), Query Frame = 2 
Query: 4274 SGWVFKEFTQISLNICQYKSRFGGTYIKLHFKPNV---ILNIQNKVN-RCFIYSILVYLHPQATTQHPYR-PRPYKKYEHELNLEGIDFLIDFNGIKKLCIQNPGIKINVLGNNENKRLSITYKSHLDWKG*NLLLYKD----HCILCKNVAVFLGNST---YHDFYPCLNCLASFRVENALKTHQELCIQHKEAVATFHRDE-----YKEFTNFHQKNKVPFVFGADFEYWNKHE---GKENKR*EIEQ------KVFCYGIYIKSN---YTHLMKSHYLEYFGEHAVLRFAETINNLSGEFKNLLKVEYSIDISKEQREEYNKATCCYYCEKKST*EDYKVMEHDNLFENDYRG 5254
            SGW F       +NI  +    G +Y++L  +  V   I+N++N+ + +CF +++   ++P+    +P R  R   +     +  GI+F +    I K   QNP   +NV    E K   +       +   NLLL  +    H    K+V   + +     +H  + C  CL SFR + AL+ H E C +++        D+     Y  F NF++K +VPFV  ADFE + ++      +  R   +Q        FCY I    +   ++  +    ++   E     F E++ +   E  N  K    +++++E    Y+ AT C+ C  +   ED KV++H +L    YRG
Sbjct:  593 SGWQFDRVEYFDINIDPFDPLSGSSYVELPKELAVKKAIINVRNENDHKCFKWAVTSAVYPK--RDNPQRLSRKMMENSERFDWSGIEFPVSLRQIDKFERQNPHT-VNVFTYEEKKICPLRISGKDPFNAINLLLISNGETSHYCWIKDVMSLVSSQIDKYHHTRFLCFRCLNSFRCKKALEKHYEYCSKNESVRIEMPMDKDGKPLYTRFVNFNRKMRVPFVVYADFESFTENIDTCSPDESRSFTKQYQKHKPSGFCYLIKCSIDDGVFSPKLVQRTVQGSAEDVAQLFVESLESDIKEIYNKFKFPKEVEMTREDEMNYDNATHCHICGGELG-ED-KVLDHCHL-TGKYRG 942

HSP 2 Score: 61.6178 bits (148), Expect = 6.327e-29
Identity = 37/95 (38.95%), Postives = 46/95 (48.42%), Query Frame = 1 
Query: 5251 GPTHNLCNLRATKRNFVPIYFHNGSGYDNHLIFLALAPNVTKI--IPITYERYISFSVGT------------------MRFLDSYLLMPSSLDYL 5475
            G  HN CNLR     F P+ FHN SGYD+HL    L  +  KI  IP   E+YISF+                     +RF+DS+  M +SLD L
Sbjct:  942 GAAHNACNLRFRAPKFFPVLFHNLSGYDSHLFVKNLGTSEGKINCIPNNEEKYISFTKQVVVDRFTNKEGKQVDVKRDIRFIDSFKFMSASLDSL 1036
[Close]
BLAST of Rho_N domain-containing protein vs. Ensembl Nematostella
Match: EDO44110 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RWZ0])

HSP 1 Score: 92.0485 bits (227), Expect = 1.905e-19
Identity = 94/348 (27.01%), Postives = 154/348 (44.25%), Query Frame = 2 
Query: 4226 LLRYLNGRVFDEEIEVSGWVFKEFTQISLNICQYKSRFGGTYIKLHFK---PNVILNIQNKVN-RCFIYSILVYLHPQATTQHPYR-PRPYKKYEHELNLEGIDFLIDFNGIKKLCIQNPGIKINVLGNNENKRLSITYKSHLDWKG*NLLLYKD----HCILCKNVAVFLGNST---YHDFYPCLNCLASFRVENALKTHQELCIQHKEAVATFHRD-----EYKEFTNFHQKNKVPFVFGADFEYWNKH-------EGKENKR*EIEQKV--FCYGI--YIKSNYTHLMKSHYLEYFGEHAVLRFAETINNLSGEFKNLLKVEYSIDISKEQREEYNKATCCYYCE 5185
            +  YL G V   + + SGW F +     +NI   K   G +YI L  +      I+N++N+ +  CF +++   ++P+ T  HP R  +   +     N  GI+F I    I +   QNP   +NV G  E     +      D +  NLLL  D    H    KN++  L +      H    C  CL SF  + AL+ H E C +++E      RD      Y +F +F++K +VPFV  ADFE + ++       E K   +   + K   FCY I  +  S +   +    L+   E     F E++ +   E  +  +    +++++  R +Y+ AT C+ CE
Sbjct:    1 MANYLLGLVEKFQKQGSGWRFDQVEYFDINIDPXKPLSGSSYIPLPSELASKKAIINVKNESDHECFKWAVTSAIYPKET--HPERLNKQMTESSKNFNWSGIEFPISLKQIDEFEKQNPHA-VNVYGY-EGSVYPLRISKRHDTRTINLLLISDDETNHYCWIKNMSRLLSSQIGDHQHASEFCPRCLNSFWCKEALERHSEYCSKNEEVKIEMPRDIDGNPLYTKFRSFNRKMRVPFVVYADFECFTENIDTCSPDESKSFTKQYQKHKPSGFCYLIKCFDDSIFPPTLVRETLQGPTEDVAQMFVESLESDIKEIYDKFRFSKRVEMTQRDRIDYSNATHCHICE 344
[Close]
BLAST of Rho_N domain-containing protein vs. Ensembl Nematostella
Match: EDO34080 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQD5])

HSP 1 Score: 81.2629 bits (199), Expect = 2.930e-15
Identity = 77/255 (30.20%), Postives = 117/255 (45.88%), Query Frame = 2 
Query: 4199 ISILFQGVILLRYLNGRVFDEEIEVSGWVFKEFTQISLNICQYKSRFGGTYIKLHFK---PNVILNIQNKVN-RCFIYSILVYLHPQATTQHPYR-PRPYKKYEHELNLEGIDFLIDFNGIKKLCIQNPGIKINVLGNNENKRLSITYKSHLDWKG*NLLLYKD----HCILCKNVAVFLGNST---YHDFYPCLNCLASFRVENALKTHQELCIQHKEAVATFHRD-----EYKEFTNFHQKNKVPFVFGADFE 4912
            +S LF    +  YL G V   + + SGW F +     +NI  +K   G +YI L  +      I+N++N+ +  CF +++   ++P+ T  HP R  +   +     N  GI+F I    I +   QNP   +NV G  E     +      D +  NLLL  D    H    KN++  L +      H    C  CL SF  + AL+ H E C +++E      RD      Y +F +F++K +VPFV  ADFE
Sbjct:  347 LSDLFD--TMANYLLGLVEKFQKQGSGWRFDQVEYFDINIDPFKPLSGSSYIPLLSELASKKAIINVKNENDHECFKWAVTSAIYPKET--HPERLNKQMTESSKNFNWSGIEFPISLKQIDEFEKQNPHA-VNVYGY-EGSVYPLRISKRHDTRTINLLLISDDETNHYCWIKNMSRLLSSQIGDHQHASEFCPRCLNSFWCKKALERHSEYCSKNEEVKIEMPRDIDGNPLYTKFRSFNRKMRVPFVVYADFE 595
[Close]
BLAST of Rho_N domain-containing protein vs. Ensembl Nematostella
Match: EDO34977 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SMS5])

HSP 1 Score: 78.9518 bits (193), Expect = 1.550e-14
Identity = 65/235 (27.66%), Postives = 108/235 (45.96%), Query Frame = 2 
Query: 4274 SGWVFKEFTQISLNICQYKSRFGGTYIKLHFKPNV---ILNIQNKVN-RCFIYSILVYLHPQATTQHPYR-PRPYKKYEHELNLEGIDFLIDFNGIKKLCIQNPGIKINVLGNNENKRLSITYKSHLDWKG*NLLLYKD----HCILCKNVAVFLGNST---YHDFYPCLNCLASFRVENALKTHQELCIQHKEAVATFHRDE-----YKEFTNFHQKNKVPFVFGADFEYWNKH 4927
            SGW F       +NI  +    G +Y++L  +  V   I+N++N+ + +CF +++   ++P+    +P R  R   +     +  GI+F +    I K   QNP   +NV    E K   +       +   NLLL  +    H    K+V   + +     +H  + C  CL SFR E AL+ H E C +++        D+     Y  F NF++K +VPFV  ADFE + ++
Sbjct:  166 SGWQFDRVEYFDINIDPFDPLSGSSYVELPKELAVKKAIINVRNENDHKCFKWAVTSAVYPK--RDNPQRLSRKMMENSERFDWSGIEFPVSLRQIDKFERQNPHT-VNVFTYEEKKICPLRISGKDPFNAINLLLISNGETSHYCWIKDVMSLVSSQIDKYHHTRFLCFRCLNSFRCEMALEKHYEYCSKNESVRIEMPMDKDGKPLYTRFVNFNRKMRVPFVVYADFESFTEN 397
[Close]
BLAST of Rho_N domain-containing protein vs. Ensembl Nematostella
Match: EDO48021 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKP4])

HSP 1 Score: 74.3294 bits (181), Expect = 2.777e-13
Identity = 90/342 (26.32%), Postives = 153/342 (44.74%), Query Frame = 2 
Query: 4274 SGWVFKEFTQISLNICQYKSRFGGTYIKLHFK---PNVILNIQNKVN-RCFIYSILVYLHPQATTQHPYR-PRPYKKYEHELNLEGIDFLIDFNGIKKLCIQNPGIKINVLGNNEN---KRLSITYKSHLDWKG*NLLLYKD----HCILCKNVAVFLG---NSTYHDFYPCLNCLASFRVENALKTHQELCIQHKEAV----ATFHRD---EYKEFTNFHQKNKVPFVFGADFEYWNKH-------EGKENKR*EIEQKV--FCYGIYIKSNYTHLMKSHYLEYFGEHAVLRFAET-INNLSGEFKNL---LKVEYSIDISKEQREEYNKATCCY-YCEKK 5191
            SGW F +     +NI  ++   G +YI+L  K      I+N++NK +  CF +++   ++P+   + P R     ++   + +  GI+F +    I K   QNP   +NV G N     +R+S    + +     NLLL  +    H    K+++  L    N+  H    C  CL  F  + AL+ H E C  H EAV        +D    + +F N+++K +VPFV  ADFE + ++       E K   +   E K   FCY   IK    ++  S  + Y  E       +  +++L  + K++    K    + ++   R +Y  AT C+ YC ++
Sbjct:  213 SGWRFDQVEYFDINIDPFEPLSGSSYIQLPSKLASKQAIINVKNKNDHECFKWAVTSAMYPRG--KDPQRLNEQIRESSKKFDWAGIEFPVSLKQIDKFEKQNP-YTVNVFGYNGEVFPRRISKKRNARVI----NLLLISNDETNHYCWIKDMSRLLSSQINNHQHATEFCPRCLNPFWCKKALEKHSEYCDNH-EAVRIEMPKIDKDGNLPHIKFKNYNRKMRVPFVVYADFESFTENIDTCSPDESKSFTKQYQEHKPSGFCY--LIKCFDDNIFPSELVRYTAESPDEDIPQMFVDSLESDIKDIYNKFKFPKKVKMTLRDRTDYKNATHCHIYCSRQ 544
[Close]
BLAST of Rho_N domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000040305.1 (pep primary_assembly:ASM223467v1:1:25459511:25466649:-1 gene:ENSORLG00000028409.1 transcript:ENSORLT00000040305.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 37.7354 bits (86), Expect = 1.901e-6
Identity = 24/77 (31.17%), Postives = 40/77 (51.95%), Query Frame = -2 
Query:  959 EQCLIYIDNVLIYGGTYEQQLGRVRAVLGRLPNQVKQFK-SETHNFLLQVLYLRH-----GISD--*DIKRLKEWAV 1165
            E CL+Y+D++++ G    Q + R+  V  RL     + K S+   F  QV YL H     GIS     I+++++W +
Sbjct:  979 EACLVYLDDIIVLGCNSNQMMERLEQVFTRLRQANLKLKPSKCRLFQEQVAYLGHVVSAQGISTDPQKIQKVQDWPI 1055

HSP 2 Score: 35.8094 bits (81), Expect = 1.901e-6
Identity = 15/29 (51.72%), Postives = 20/29 (68.97%), Query Frame = -3 
Query: 1180 KRRLFGFSRMSIGLSTAPATFQRLMDMIF 1266
            ++ LF ++ M  GL  APATFQRLMD + 
Sbjct:  945 RKGLFEWNVMPFGLCNAPATFQRLMDRVL 973
[Close]
BLAST of Rho_N domain-containing protein vs. Planmine SMEST
Match: SMESG000015240.1 (SMESG000015240.1)

HSP 1 Score: 237.654 bits (605), Expect = 5.101e-97
Identity = 138/266 (51.88%), Postives = 172/266 (64.66%), Query Frame = 2 
Query: 4481 YKKY--EHELNLEGIDFLIDFNGIKKLCIQNPGI-KINVLGNNENKRLSITYKSHLDWKG*NLLLYKDHCILCKNVAVFLGNSTYHDFYPCLNCLASFRVENALKTHQELCIQHKEAVATFHRDEYKEFTNFHQKNKVPFVFGADFEYWNKHEGKENKR*EI---EQKVFCYGIYIKSNYTHLMKSHYLEYFGEHAVLRFAETINNLSGEFKNLLKVEYSI-DISKEQREEYNKATCCYYCEKKST*EDYKVMEHDNLFE-NDYRG 5254
            YK+Y    ELN+ GI+F I  NGI+K   QN  I KINV   N+NK+L I Y+ HLD KG NLLLYKDH +LCKN  VFL NS     + CLNC ASF VENALK HQ+ C++H+E +A+F    Y EF N++ KNKVPFV  +DFE WNK  G    R ++   EQK FC+ IY+KSNY  L++   + Y GE A   FAETIN+LS E K  LK  Y I ++S EQ  EY     C+YC K+ T  + KVM+HD+  E N+YRG
Sbjct:  183 YKQYLENGELNISGINFPIHLNGIQKFARQNYTIVKINVFTINDNKKLGILYRDHLDPKGCNLLLYKDHYVLCKNFGVFLKNSKVDVSFLCLNCFASFTVENALKKHQQFCVEHEEGIASFPHVPYHEFQNYNYKNKVPFVCYSDFEAWNKVAGDTLDRNDLIRSEQKGFCFSIYLKSNYPLLVEDRNIVYEGEDATTAFAETINSLSEELKPKLKTNYIISELSDEQLNEYRNEVICFYCGKEFTPTNDKVMDHDHYLEKNNYRG 448

HSP 2 Score: 139.428 bits (350), Expect = 5.101e-97
Identity = 63/101 (62.38%), Postives = 80/101 (79.21%), Query Frame = 1 
Query: 5251 GPTHNLCNLRATKRNFVPIYFHNGSGYDNHLIFLALAPNVTKIIPITYERYISFSVGTMRFLDSYLLMPSSLDYLGSLLKPEECEIYNKY---FTIRVRKG 5544
            G  HN CNL+A   NF+P+YFHNGSGYDNHL+FL LAPN+TKIIP T E+YISF+VG +RFLDS+  MP SL+YL SLL+PE  + +NK+   F +++RKG
Sbjct:  448 GAAHNDCNLKARTNNFIPLYFHNGSGYDNHLVFLPLAPNITKIIPSTDEKYISFTVGCIRFLDSFKTMPLSLEYLASLLEPEHLKTFNKFYPQFNLKIRKG 548
[Close]
BLAST of Rho_N domain-containing protein vs. Planmine SMEST
Match: SMESG000022562.1 (SMESG000022562.1)

HSP 1 Score: 320.087 bits (819), Expect = 1.205e-93
Identity = 169/276 (61.23%), Postives = 196/276 (71.01%), Query Frame = 2 
Query: 4214 QGVILLRYLNGRVFDEEIEVSGWVFKEFTQISLNICQYKSRFGGTYIKLHFKPNVILNIQNKVNRCFIYSILVYLHPQATTQHPYRPRPYKKYEHELNLEGIDFLIDFNGIKKLCIQNPG-IKINVLGNNENKRLSITYKSHLDWKG*NLLLYKDHCILCKNVAVFLGNSTYHDFYPCLNCLASFRVENALKTHQELCIQHKEAVATFHRDEYKEFTNFHQKNKVPFVFGADFEYWNKHEGKENKR*EIEQKVFCYGIYIKSNYTHLMKSHYLEYF 5038
            Q V  L YLN R FDE++E SGWV KEFTQISLNICQYKS  G TYIK  FK NVILNIQNK+N+CF+YSIL YLHP ATTQHPYRP  Y KYE ELNLE IDF   F   +++  QN   +KINV    E K+LSI ++ HLD KG NLLLYK H +LCKN++VF+GN+T +  +PCLNC ASFR EN LK+HQ LC+ H E VATF RDEYKE            +  ADFE WN  +  +N    IEQK FCYGIYIKSNY +LMKS Y++YF
Sbjct:  414 QIVKQLPYLNDREFDEQLEGSGWVLKEFTQISLNICQYKSSVGRTYIKFPFKSNVILNIQNKINKCFVYSILGYLHPVATTQHPYRPGQYNKYESELNLEEIDFPKKFKWNQEIQQQNSDKLKINVFNIIEKKKLSIIFRDHLDPKGCNLLLYKQHYVLCKNISVFMGNNTGNTIHPCLNCFASFRAENTLKSHQRLCVHHDEVVATFCRDEYKE-----------SICSADFESWNHLKSVDNV---IEQKGFCYGIYIKSNYPNLMKSRYIDYF 675
[Close]
BLAST of Rho_N domain-containing protein vs. Planmine SMEST
Match: SMESG000057392.1 (SMESG000057392.1)

HSP 1 Score: 246.514 bits (628), Expect = 2.217e-75
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 
Query: 5947 ADLPDEMCVFSKFPFIFGNERIDIKNIKQDLHLPLACDSCCYILKTGGDKHYFELILCEDDIYPEFPEEFSTHDNYANHVFINNGNNSDIKNSGDCFKLERFTTTQLFNLMGPRIKKFE 6303
            ADLPDEMCVFSKFPFIFGNERIDIKNIKQDLHLPLACDSCCYILKTGGDKHYFELILCEDDIYPEFPEEFSTHDNYANHVFINNGNNSDIKNSGDCFKLERFTTTQLFNLMGPRIKKFE
Sbjct:   10 ADLPDEMCVFSKFPFIFGNERIDIKNIKQDLHLPLACDSCCYILKTGGDKHYFELILCEDDIYPEFPEEFSTHDNYANHVFINNGNNSDIKNSGDCFKLERFTTTQLFNLMGPRIKKFE 128
[Close]
BLAST of Rho_N domain-containing protein vs. Planmine SMEST
Match: SMESG000052330.1 (SMESG000052330.1)

HSP 1 Score: 150.599 bits (379), Expect = 1.498e-68
Identity = 73/85 (85.88%), Postives = 74/85 (87.06%), Query Frame = 1 
Query: 5251 GPTHNLCNLRATKRNFVPIYFHNGSGYDNHLIFLALAPNVTKIIPITYERYISFSVGTMRFLDSYLLMPSSLDYLGSLLKPEECE 5505
            G  HN CNL+A K NFVPIYFHNGSG DNHLIFLALAPNVTKIIP T ERYISFSVGTMRFLDSY LMP SLDYL SLLKPEECE
Sbjct:   82 GTAHNRCNLKAKKINFVPIYFHNGSGCDNHLIFLALAPNVTKIIPSTDERYISFSVGTMRFLDSYRLMPLSLDYLASLLKPEECE 166

HSP 2 Score: 131.339 bits (329), Expect = 1.498e-68
Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 2 
Query: 5012 MKSHYLEYFGEHAVLRFAETINNLSGEFKNLLKVEYSIDISKEQREEYNKATCCYYCEKKST*EDYKVMEHDN-LFENDYRG 5254
            MKSHY+EYFGEH  L FAETINNLS +FKN+LK EYSID+SKEQREEYNK++CCYYCEKK T EDYKVM+HD+ LFE +YRG
Sbjct:    1 MKSHYVEYFGEHEALHFAETINNLSVKFKNILKTEYSIDVSKEQREEYNKSSCCYYCEKKFTEEDYKVMDHDHYLFEKNYRG 82
[Close]
BLAST of Rho_N domain-containing protein vs. Planmine SMEST
Match: SMESG000069360.1 (SMESG000069360.1)

HSP 1 Score: 145.206 bits (365), Expect = 2.227e-66
Identity = 71/90 (78.89%), Postives = 77/90 (85.56%), Query Frame = 1 
Query: 5260 HNLCNLRATKRNFVPIYFHNGSGYDNHLIFLALAPNVTKIIPITYERYISFSVGTMRFLDSYLLMPSSLDYLGSLLKPEECEIYNKYFTI 5529
            +N CNL+A K NFVPIYF+NG+G DNH IFLALA NVT+IIP TYE YI FSVGTMRFLDSY LMPSSL YL SLLKPEECE+YNKYF I
Sbjct:  537 YNSCNLKAKKINFVPIYFYNGNGNDNHFIFLALAHNVTQIIPSTYEIYIPFSVGTMRFLDSYRLMPSSLYYLASLLKPEECEVYNKYFNI 626

HSP 2 Score: 129.798 bits (325), Expect = 2.227e-66
Identity = 66/86 (76.74%), Postives = 72/86 (83.72%), Query Frame = 2 
Query: 4952 EIEQKVFCYGIYIKSNYTHLMKSHYLEYFGEHAVLRFAETINNLSGEFKNLLKVEYSIDISKEQREEYNKATCCYYCEKKST*EDY 5209
            +IEQK FCYGI IKSNY +L K HYLEYFGE+A L FAETINNLS EFKN+LK EYSID+SKEQ EEYNK+ CCYY EKK T EDY
Sbjct:  452 DIEQKGFCYGICIKSNYLYLTKYHYLEYFGENAALHFAETINNLSEEFKNILKTEYSIDVSKEQLEEYNKSICCYYYEKKFTEEDY 537
The following BLAST results are available for this feature:
BLAST of Rho_N domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ZC53.46.161e-838.57pep chromosome:WBcel235:X:1925750:1937689:1 gene:W... [more]
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A533V7R82.580e-3829.31Uncharacterized protein (Fragment) OS=Thaumarchaeo... [more]
A0A026WBS97.503e-3226.91Uncharacterized protein OS=Ooceraea biroi OX=20151... [more]
A0A2L2YHS07.922e-3227.95Uncharacterized protein (Fragment) OS=Parasteatoda... [more]
A0A2L2YHT18.256e-3227.95Uncharacterized protein (Fragment) OS=Parasteatoda... [more]
A0A3L8D6Z42.131e-3025.87Uncharacterized protein OS=Ooceraea biroi OX=20151... [more]
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSAMXT00000030217.19.581e-630.83pep primary_assembly:Astyanax_mexicanus-2.0:16:123... [more]
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO461096.327e-2925.56Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO441101.905e-1927.01Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO340802.930e-1530.20Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO349771.550e-1427.66Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO480212.777e-1326.32Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSORLT00000040305.11.901e-631.17pep primary_assembly:ASM223467v1:1:25459511:254666... [more]
back to top
BLAST of Rho_N domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000015240.15.101e-9751.88SMESG000015240.1[more]
SMESG000022562.11.205e-9361.23SMESG000022562.1[more]
SMESG000057392.12.217e-75100.00SMESG000057392.1[more]
SMESG000052330.11.498e-6885.88SMESG000052330.1[more]
SMESG000069360.12.227e-6678.89SMESG000069360.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30034526 ID=SMED30034526|Name=Rho_N domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=6305bp
CATGCTTCATGCTCTTAACCACATGCTCTGATTTTTGAGCATATGCTCTT
TAAACTTGATGTTTGTCAGGAGCAACCTCATTTATTAAAATTTTATGCTT
TGCGCACAACTATTGATGTGAAAAGTGATGAGGATAACAAAAAATTACAC
CGATTTACCCGTGATCATGTAATCTGGTTGTCCTATACATTTTTGGATGG
TTCATTTGAAACTCGTGGTGGACCTCTGTCATCCGTGAAGAAAATGGAAA
TCACTCTGCGATATTGTACAGATCCGGGCTTTCAGCAAGGAGTTGCTCAT
GATTACGGAGTGACTCAATCGACTGTATCAAAAACGGTTACAAGCACTCT
GAAAAAGGTGGCACATAAACATCATGAATCTATCAAGATAAAGCAAAGTG
GGCTGCTGCTTGGGATTTCATGCAACCATCGGTGCATTAGGCTGTAGCAT
GTGAGAATCGAAAAACCAAGTGGAGTGCATGGTGATGAGTATATCAACAG
GAAAGGGTTTCCTTCTTTAAATGCCCAGGTAAGCTGTAACTGTTGAAACC
TTTATATTTGTTGTTAAATGTCTGGACTTGTTTATCAGGCCACTTGTAAT
GAAAAATGCTTGCTGGCCTGGGTTAGTACATGATAATTGTGACCTGAAAA
ATATTCATATTTTAATAAGTCAAAGAAGGGAAACATCCGAAATGATTAAC
CGCAAAACTCTTCAGTAACCAATCAGCAGTTTTCTGTGTGTGATTGTGTG
TGAGAGAGTGCTTTTATTTATCTCAGCGCAGCTTGGTGTACCGTTATGGC
GTAGCACATGCTCACGAGAATAAGCATGTACTCGGTAGTATGAGCAATAG
GTTATTAATAAACCTTAGAGTACATGCTTATGCACTTGAACACATGCTCA
CACCCTAATGCTCATACTCAAGGCATTTGCTCCATGAGCACATGATCAAC
TTTATTCATACGGCCCATTCTTTTAGTCTTTTTATATCTTAATCAGAAAT
ACCATGTCTCAAATATAGAACCTGTAGTAAAAAATTATGTGTTTCGGATT
TAAATTGTTTCACTTGATTTGGCAATCTTCCAAGCACCGCTCTTACTCTT
CCTAGTTGTTGTTCATATGTACCTCCATATATCAAAACATTGTCAATGTA
TATCAAACATTGTTCACGCTTTTCTTTTTAAAAATCATATCCATCAATCT
TTGAAAAGTAGCCGGTGCTGTAGACAGTCCGATCGACATTCTGCTAAATC
CAAATAGTCTTCTCTTTATCAACTTCTTTTAGCTAGAAATTATAAAATCC
ATTTGACAAATCTAAAACGCTGAACACTGTTAGTATACAAGGAAACTAAA
ATTCAAATTATGACACACTAACATAATCTATTATTGCCATTTTCCGTCTC
TTGAGTTTTCAGGGTCATATATTTTCCCTCGCACACCTCACAATTTCCCA
CTTCACTGTCATCTACCCATGAGCGAACCCACCTTGGTACCGCACATGAC
TTCCGTAAACTATTCGAGAAGGTGAGCACCGTTTCCGGTACTACTCCTCG
AATAACACTCGTTACGGGTTCCAGACAGCCGCTAGAAGGTCCTACGTCGA
CATGGCTTTCCTGGGTGAACTGAATTCCCATCGGTTCCATGCATATACTT
GTAGAAAATTTTCGTATTCAAATCGGTACTTAGTAAATTTTCCTTTTGTT
TAGAAATTTTCTACCGTTGGGGCAAAGTCGTAAAAATTATGTGATTTGAA
CTAATATGTACTACTTGAGTAAAATATTAGGAAAATAAACTTTAACCCCA
TTTTATTACAAAAGACTATTTCATTTCAGCTTTGTTTTACTATTCTAATT
GTGCAGACTCATACCGTGTTTCTACGAATATAAGACCCGGTCTTATATTA
ATTTCATAGCCAAAAAACGAACTAGGTTTCATTTTCGTGAGGAAAACCAA
AAGTACAAAACACGTTATTTTATAAAAACTCAACATTTTTACAATCAAAA
TTGTTTATTTGTTAAGCAAGAGCAACATACATTAACAAAACAAAACATTT
AATAAATAGAAACATAACACATTGATTCTAACATCATTTCCTTCTCTTCT
GGGACGTCGTCATAACACATCAAACCTTGAACGCCAGACTGTATTTCTTG
CAAATGGATCTCTTCTAGAATACGTTGACCAAATATCTCGTGTTTAACGA
TCACTTTGTTAGAAGGAACAAATATCCTGCACGAAATGCATTGACAACAC
AATTAGCGGTAATTTTATTCCATGAATTATTTATCCACGATTTCTGTCAG
GTTTGACCTAATAAAATTTCCATGTTAGTTTCTCTCCATTCTATGTTCGA
TGTAAACATTAACTTTGTTGGTGTATTGGGAACATTTAAACAATTAATTA
ACAGTTCCTACCCAAATATCTCTCTCTTTATCTCCTCATCATTAAGGTCA
CATTTCCCTCGCACTCTACACAATTTACGCCATGTACCCATGAGCAAACC
CATGTTAGTACTGTACATTATGGCCAAATGCTACTCAAGCATGTGAGCGT
CGTTACCAACACTACTCCTTGAATAACCTTCGATTCGGGTACAATGCGGC
CGTTAGAAGGACTTACGCTTTACTTATTTAATATAATTTCCCATCAAACC
AAGTATTCTAACCTTGGAAGATTTCGTGAGGTTATTGAGAAATCAAAACG
TTTACTAAAGCTTTTATTAATTTTTTGACCGATTTAACAGGAGATGACTA
GATCAAACTTTTTCATATTTATATTGACAGTTTAATTATTTAATTAACTT
ATTAATTACTATATTTAAAAATCGTTACAAAAGTTCTTAATCACTTATTA
ATAAAATTCACAAATATTTAATTCACAATCTACTCTATTTGTTTTATATC
AAAGAGAACAAACAACTAAAATTGAGATTCTTTTCCGATTAAGAAAACTA
AAACTACAGTTCAATCACTATAAAGATAAGTATTATCGTCAAAGTCGGAT
TTCATCATCAATCTTCTTCGGCATCGATGTCTGGGCCTTCTTATAGTTGG
ATTTGAATGTTGTTGAGAAACATTTCTAGCTGCCAGGTCGAAATTATTAC
GTACCGGTGGTTCGGTGACCGAAATGATTTGCGGAGGGGATCTTCCGCTG
GAGATTTCGTGTACTTCTTCCAGGGCAGGAGATGCTCTAGTGAATATCGT
TATTTGCACGTTGGTTGATGCGTCCGCGGAGAGGCTATCCATCGAGATAT
TTAATTGAGACGATGTCGGGGCCGGCTGGGAGAGATCCAGCAATCTGGGT
GTATAAATTATCTCAAGATCGGAGTCGTCGGGCATGTATATAGGCTCGCG
CGAAGTTACTTCAAACATCCTACTCGAATTGGTATTTTTTTATGGCGTTC
AAATGTTAAGCCAATGCCATTTAGAAACGTTCTGTGAGTATTGCAACAAT
TATTATAAGAACGCGTACTATGCAGGTCATTTAATAACTAAATTACATAA
ACAAAATGTGATTAAAGTTCGCTCCACCACCACAAAAAGCCAATAGCTTA
GGGGAATTCACGTACACTTATCCAGGAATCTCTCAAGAAGCCACTTTTAA
AAACTCGACTGCTCTGAAATTTGTTATGGATAAGAAGAGATTGAAGAAAA
TGAGGGATTTGAATGTTGATGGATTCCACAGTATTCTTTTCAATTACTTT
AAACATTTCCAAAAAGCTCTTATAAAAATTTTCAATTGGGATTTCAGTAT
TGTACTTAAAACCAAAGCCAGACCTTCTGATTTTAATGTTTTGAATACTC
CTGAAGGAGATCGAGAAGAGGATGTGGAGAACAGACGAGAGGAAGAACTT
AGAAAGGAATCATAGAAATATAACAAACAGAGAAAAATAAAAAATATGAT
GATGGATTACCTGGAGACTTAAAAAGGGGATTGAAGAAGATATTGAAAAA
GAGGGAAAAGGAGAAAAAACAAACAAAAAAACAAGTCCAGCAGAGATTAG
AACGTGAAATCGAACATATAATGAGGAAGAAACAGAGACTCCGACAAATA
ATGAAGAACCAACAATTACAGAATCAACAAGGGAAACGAAGGAACAAACA
AGAAATAAGAAGAAGTGTTTTAATTAAAAAATGACTGCCTGCATATTATC
AGATAAGAGTGGATATGTTGAGAAACCAAGAACATGATAATGATGATCAT
TTCGATACTATTCCAAGGTGTTATACTGCTCCGGTATTTAAATGGACGGG
TATTTGATGAGGAAATTGAAGTTAGTGGATGGGTCTTCAAGGAATTCACA
CAGATATCCCTGAATATATGCCAGTATAAATCACGGTTTGGTGGGACGTA
TATAAAACTCCATTTTAAACCAAACGTTATTTTAAATATCCAGAATAAAG
TCAATAGGTGTTTCATATATTCTATTCTGGTATATTTACATCCACAAGCA
ACGACTCAACATCCGTACAGGCCTAGACCATACAAAAAATACGAGCATGA
ATTGAACCTAGAGGGAATTGATTTCCTTATTGATTTTAATGGAATAAAGA
AATTGTGTATACAAAATCCAGGCATTAAAATTAATGTGTTGGGGAATAAT
GAGAATAAGAGATTAAGTATTACATACAAATCTCATTTAGATTGGAAGGG
ATGAAATTTATTATTGTATAAAGACCATTGTATACTGTGTAAGAACGTGG
CTGTATTTCTAGGGAACAGTACATACCACGATTTTTATCCGTGTCTCAAC
TGTCTTGCGTCGTTCAGAGTTGAGAATGCGTTGAAGACTCACCAGGAATT
ATGTATTCAACATAAAGAAGCGGTTGCCACATTTCATCGTGACGAGTATA
AGGAATTTACGAATTTTCATCAAAAGAACAAGGTTCCGTTCGTATTTGGT
GCAGACTTTGAATATTGGAATAAACATGAGGGAAAAGAAAATAAACGGTA
GGAAATCGAGCAAAAAGTATTTTGTTATGGAATATACATAAAGAGTAACT
ATACTCATTTAATGAAATCCCATTATCTCGAGTACTTTGGGGAACATGCA
GTTTTACGTTTTGCTGAAACCATCAATAATTTATCCGGGGAGTTTAAAAA
TCTTTTAAAGGTCGAATATTCTATAGATATATCAAAAGAACAGAGGGAGG
AATATAATAAAGCTACTTGTTGTTATTATTGCGAAAAGAAATCCACATAA
GAAGATTATAAGGTGATGGAGCATGATAACCTATTCGAGAATGATTATCG
GGGCCGACACATAACTTATGTAATTTAAGGGCAACGAAAAGAAATTTCGT
GCCAATATATTTTCATAATGGAAGTGGGTATGATAATCATCTAATCTTCT
TGGCTTTAGCTCCTAATGTAACTAAAATAATTCCTATCACATATGAAAGA
TATATTTCCTTCAGTGTTGGAACAATGAGGTTCTTGGATTCGTATCTATT
GATGCCATCGTCTTTAGATTACCTCGGATCTCTTTTAAAACCTGAAGAGT
GTGAGATTTACAATAAATATTTTACTATCCGGGTAAGAAAGGGATCGAAT
TTTACTCTGAAGTTATGGATAAAACGAATGAAAAGAAATTACCGGAGAAA
CAAATTAAAAGTAATCAGTGGTGAAAACTAAGGAAGTTATTATATATATA
TATATATATCTGTGTGTGTGATCATAATAAGATTATGACCATAATTATGT
GATGATTATAACATTACATATTCATATTATGCGGTATTTTATTGTTCATT
AATATATATGCAATAATTATAAATTATTTGGCTGTACTTTTGCAACAACT
ACTAACGTCATTCGACGGGATATGTATATGATAGTTATTATTATAAATTT
TTATTTGGAATAATAAAATTTGTCATTTTTGACGAGTTATAGGTAGTTTT
TAAATAATTTTCTTTTTTTACAATTTTTTTCAAATATTATAATTAGGCAG
ACTTACCTGATGAAATGTGCGTGTTTTCAAAATTCCCGTTTATATTTGGA
AACGAAAGGATCGATATCAAGAATATAAAGCAAGATCTGCATTTGCCTTT
AGCATGTGATTCTTGTTGTTATATTTTGAAAACAGGAGGGGATAAACATT
ATTTTGAACTGATTTTGTGTGAGGATGACATTTATCCAGAATTTCCAGAG
GAATTTTCAACTCACGATAACTATGCCAATCATGTATTTATCAACAATGG
GAATAATTCCGATATCAAAAACTCTGGGGATTGTTTCAAGCTGGAAAGGT
TTACTACAACTCAACTATTTAACTTAATGGGACCTAGAATAAAAAAATTT
GAAAA
back to top

protein sequence of SMED30034526-orf-1

>SMED30034526-orf-1 ID=SMED30034526-orf-1|Name=SMED30034526-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=113bp
MCVFSKFPFIFGNERIDIKNIKQDLHLPLACDSCCYILKTGGDKHYFELI
LCEDDIYPEFPEEFSTHDNYANHVFINNGNNSDIKNSGDCFKLERFTTTQ
LFNLMGPRIKKFE
back to top

protein sequence of SMED30034526-orf-2

>SMED30034526-orf-2 ID=SMED30034526-orf-2|Name=SMED30034526-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=136bp
MFEVTSREPIYMPDDSDLEIIYTPRLLDLSQPAPTSSQLNISMDSLSADA
STNVQITIFTRASPALEEVHEISSGRSPPQIISVTEPPVRNNFDLAARNV
SQQHSNPTIRRPRHRCRRRLMMKSDFDDNTYLYSD*
back to top

protein sequence of SMED30034526-orf-3

>SMED30034526-orf-3 ID=SMED30034526-orf-3|Name=SMED30034526-orf-3|organism=Schmidtea mediterranea sexual|type=polypeptide|length=135bp
MLFKLDVCQEQPHLLKFYALRTTIDVKSDEDNKKLHRFTRDHVIWLSYTF
LDGSFETRGGPLSSVKKMEITLRYCTDPGFQQGVAHDYGVTQSTVSKTVT
STLKKVAHKHHESIKIKQSGLLLGISCNHRCIRL*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: biological process
TermDefinition
GO:0006353DNA-templated transcription, termination
GO:0006260DNA replication
GO:0071897DNA biosynthetic process
GO:0090305nucleic acid phosphodiester bond hydrolysis
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0003677DNA binding
GO:0003887DNA-directed DNA polymerase activity
GO:00084083'-5' exonuclease activity
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.677