PDZ ring finger protein 4
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Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30034470 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of PDZ ring finger protein 4 vs. Ensembl Human
Match: PDZRN4 (PDZ domain containing ring finger 4 [Source:HGNC Symbol;Acc:HGNC:30552]) HSP 1 Score: 92.0485 bits (227), Expect = 3.074e-18 Identity = 111/365 (30.41%), Postives = 158/365 (43.29%), Query Frame = 2
Query: 587 ILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSIS-------------NTSVKPTIPF--MMDLS-VNIPTQSTNDYILPYPSSVFGQPLHGYINSSQKTNQINNHTDSNHSLSS-----YSNNCALKSFLNDAIKNRD-DYSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF--QKCGLEVKLLLGRPNI-ISKFNGNTNRNGNYSSEL-------------PPLEEVEYASVYDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSEC-----DSNQTSLK 1549
I++VNGKDLS A+H++ +EAF +A EPI V+V RR +S N S + I F +M L+ + PT D I P+ S DS HSL Y +N + S DA + D +Y EV L + S+E GLT+ Y D ++ +Y+S ++PNS+A K+ IR GD+ILQIN DV ++ + V+L +C + LL+ RP I + + RN P EVE +E EG T+ + +KDSG+GR TDE+ + +ESSE D N TSLK
Sbjct: 279 IMEVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRTPLSRPAYGMASEVQLMNASTQTDITFEHIMALAKLRPPTPPVPD-ICPFLLS-----------------------DSCHSLHPMEHEFYEDNEYISSLPADADRTEDFEYE-------------------------------EVELCRVSSQEKLGLTVCYRT---DDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQNREEAVALLSNDECK-RIVLLVARPEIQLDEGWLEDERNEFLEELNLEMLEEEHNEAMQPTANEVEQPKKQEEEEGTTDTATSSSNNHEKDSGVGR-TDESLRNDESSEQENAAEDPNSTSLK 583 HSP 2 Score: 72.0182 bits (175), Expect = 4.620e-12 Identity = 69/235 (29.36%), Postives = 113/235 (48.09%), Query Frame = 2
Query: 1817 NTSAYSTGADSTRSSPLTMELPPTISSASFLSL--KIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRM-----ASSTIL-----HQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQL------IKSDKL-DSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
++SAY+T A+S RS+PLT++ P S ++L K ++R+ + S T ++Q ++ S L S++ A S + + SS + IP H+ +Y Y L I+Q + VE Y +QL +S K + KMEW VK R DGTRYIT+RP+R+R++K+R K+ EER+ T ++D +++ + R W+
Sbjct: 735 SSSAYNT-AESCRSTPLTVDRSPDSSLPRVINLTNKKNLRSTMAATQSSSGQSSKESTSTKAKTTEQGCSAESKEKVLEGSKLPDQEKAVSEHIPYLSPYHSSSYRYANIPAHA------RHYQSYMQL-----------------IQQKSAVE---YAQSQLSLVSMCKESQKCSEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWS 942
BLAST of PDZ ring finger protein 4 vs. Ensembl Human
Match: PDZRN4 (PDZ domain containing ring finger 4 [Source:HGNC Symbol;Acc:HGNC:30552]) HSP 1 Score: 89.7373 bits (221), Expect = 1.109e-17 Identity = 110/370 (29.73%), Postives = 160/370 (43.24%), Query Frame = 2
Query: 572 RMDFIILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSIS-------------NTSVKPTIPF--MMDLS-VNIPTQSTNDYILPYPSSVFGQPLHGYINSSQKTNQINNHTDSNHSL-----SSYSNNCALKSFLNDAIKNRD-DYSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF--QKCGLEVKLLLGRPNI-ISKFNGNTNRNGNYSSEL-------------PPLEEVEYASVYDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSEC-----DSNQTSLK 1549
++ + + +VNGKDLS A+H++ +EAF +A EPI V+V RR +S N S + I F +M L+ + PT D I P+ S DS HSL Y +N + S DA + D +Y EV L + S+E GLT+ Y D ++ +Y+S ++PNS+A K+ IR GD+ILQIN DV ++ + V+L +C + LL+ RP I + + RN P EVE +E EG T+ + +KDSG+GR TDE+ + +ESSE D N TSLK
Sbjct: 16 KLLYEVSQVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRTPLSRPAYGMASEVQLMNASTQTDITFEHIMALAKLRPPTPPVPD-ICPFLLS-----------------------DSCHSLHPMEHEFYEDNEYISSLPADADRTEDFEYE-------------------------------EVELCRVSSQEKLGLTVCYRT---DDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQNREEAVALLSNDECK-RIVLLVARPEIQLDEGWLEDERNEFLEELNLEMLEEEHNEAMQPTANEVEQPKKQEEEEGTTDTATSSSNNHEKDSGVGR-TDESLRNDESSEQENAAEDPNSTSLK 325 HSP 2 Score: 71.633 bits (174), Expect = 5.273e-12 Identity = 69/235 (29.36%), Postives = 113/235 (48.09%), Query Frame = 2
Query: 1817 NTSAYSTGADSTRSSPLTMELPPTISSASFLSL--KIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRM-----ASSTIL-----HQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQL------IKSDKL-DSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
++SAY+T A+S RS+PLT++ P S ++L K ++R+ + S T ++Q ++ S L S++ A S + + SS + IP H+ +Y Y L I+Q + VE Y +QL +S K + KMEW VK R DGTRYIT+RP+R+R++K+R K+ EER+ T ++D +++ + R W+
Sbjct: 477 SSSAYNT-AESCRSTPLTVDRSPDSSLPRVINLTNKKNLRSTMAATQSSSGQSSKESTSTKAKTTEQGCSAESKEKVLEGSKLPDQEKAVSEHIPYLSPYHSSSYRYANIPAHA------RHYQSYMQL-----------------IQQKSAVE---YAQSQLSLVSMCKESQKCSEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWS 684
BLAST of PDZ ring finger protein 4 vs. Ensembl Human
Match: PDZRN4 (PDZ domain containing ring finger 4 [Source:HGNC Symbol;Acc:HGNC:30552]) HSP 1 Score: 88.9669 bits (219), Expect = 2.019e-17 Identity = 110/362 (30.39%), Postives = 155/362 (42.82%), Query Frame = 2
Query: 596 VNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSIS-------------NTSVKPTIPF--MMDLS-VNIPTQSTNDYILPYPSSVFGQPLHGYINSSQKTNQINNHTDSNHSL-----SSYSNNCALKSFLNDAIKNRD-DYSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF--QKCGLEVKLLLGRPNI-ISKFNGNTNRNGNYSSEL-------------PPLEEVEYASVYDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSEC-----DSNQTSLK 1549
VNGKDLS A+H++ +EAF +A EPI V+V RR +S N S + I F +M L+ + PT D I P+ S DS HSL Y +N + S DA + D +Y EV L + S+E GLT+ Y D ++ +Y+S ++PNS+A K+ IR GD+ILQIN DV ++ + V+L +C + LL+ RP I + + RN P EVE +E EG T+ + +KDSG+GR TDE+ + +ESSE D N TSLK
Sbjct: 22 VNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRTPLSRPAYGMASEVQLMNASTQTDITFEHIMALAKLRPPTPPVPD-ICPFLLS-----------------------DSCHSLHPMEHEFYEDNEYISSLPADADRTEDFEYE-------------------------------EVELCRVSSQEKLGLTVCYRT---DDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQNREEAVALLSNDECK-RIVLLVARPEIQLDEGWLEDERNEFLEELNLEMLEEEHNEAMQPTANEVEQPKKQEEEEGTTDTATSSSNNHEKDSGVGR-TDESLRNDESSEQENAAEDPNSTSLK 323 HSP 2 Score: 71.633 bits (174), Expect = 5.542e-12 Identity = 69/235 (29.36%), Postives = 113/235 (48.09%), Query Frame = 2
Query: 1817 NTSAYSTGADSTRSSPLTMELPPTISSASFLSL--KIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRM-----ASSTIL-----HQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQL------IKSDKL-DSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
++SAY+T A+S RS+PLT++ P S ++L K ++R+ + S T ++Q ++ S L S++ A S + + SS + IP H+ +Y Y L I+Q + VE Y +QL +S K + KMEW VK R DGTRYIT+RP+R+R++K+R K+ EER+ T ++D +++ + R W+
Sbjct: 475 SSSAYNT-AESCRSTPLTVDRSPDSSLPRVINLTNKKNLRSTMAATQSSSGQSSKESTSTKAKTTEQGCSAESKEKVLEGSKLPDQEKAVSEHIPYLSPYHSSSYRYANIPAHA------RHYQSYMQL-----------------IQQKSAVE---YAQSQLSLVSMCKESQKCSEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWS 682
BLAST of PDZ ring finger protein 4 vs. Ensembl Human
Match: PDZRN3 (PDZ domain containing ring finger 3 [Source:HGNC Symbol;Acc:HGNC:17704]) HSP 1 Score: 72.0182 bits (175), Expect = 1.527e-12 Identity = 57/172 (33.14%), Postives = 91/172 (52.91%), Query Frame = 2
Query: 1064 LRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNII--SKFNGNTNRNGNYSSELPPLEEVEY------ASV-----YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSECDSN 1534
L + S++ GLT+ Y D + +YIS I+PNS+A K+ IR GD+I+QIN I+V ++ + V+L + LL+ RP + + + + + LEE + ASV +DE G T+ + Q +KDSG+GR TDE+ + +ESSE ++N
Sbjct: 19 LYRMNSQDKLGLTVCYRT---DDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASVLQQKKHDEDGGTTDTATILSNQHEKDSGVGR-TDESTRNDESSEQENN 186 HSP 2 Score: 62.3882 bits (150), Expect = 1.743e-9 Identity = 28/71 (39.44%), Postives = 48/71 (67.61%), Query Frame = 2
Query: 2252 YINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
+I+A +D L + W VK R DGTRYIT+RP+R+R++++R K+ EER+ T ++D +++ + R W+
Sbjct: 222 FISADCTDADYL--GIPWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGMTTDDDAVSEMKMGRYWS 290
BLAST of PDZ ring finger protein 4 vs. Ensembl Human
Match: PDZRN3 (PDZ domain containing ring finger 3 [Source:HGNC Symbol;Acc:HGNC:17704]) HSP 1 Score: 72.4034 bits (176), Expect = 1.796e-12 Identity = 57/172 (33.14%), Postives = 91/172 (52.91%), Query Frame = 2
Query: 1064 LRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNII--SKFNGNTNRNGNYSSELPPLEEVEY------ASV-----YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSECDSN 1534
L + S++ GLT+ Y D + +YIS I+PNS+A K+ IR GD+I+QIN I+V ++ + V+L + LL+ RP + + + + + LEE + ASV +DE G T+ + Q +KDSG+GR TDE+ + +ESSE ++N
Sbjct: 120 LYRMNSQDKLGLTVCYRT---DDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASVLQQKKHDEDGGTTDTATILSNQHEKDSGVGR-TDESTRNDESSEQENN 287
BLAST of PDZ ring finger protein 4 vs. Ensembl Celegans
Match: C50F7.6 (pep chromosome:WBcel235:IV:7720566:7723199:-1 gene:WBGene00016846.1 transcript:C50F7.6a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:C50F7.6) HSP 1 Score: 52.373 bits (124), Expect = 1.054e-6 Identity = 23/55 (41.82%), Postives = 38/55 (69.09%), Query Frame = 2
Query: 2300 EWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
+W VK+R DG+RYI +RPIR++++K RE ++ ER + ++D ++L L R T
Sbjct: 285 KWKVKRRCDGSRYIVKRPIRSQILKKREAQVYRERAPISTDDDAMSELKLGRYHT 339
BLAST of PDZ ring finger protein 4 vs. Ensembl Celegans
Match: C50F7.6 (pep chromosome:WBcel235:IV:7720568:7722408:-1 gene:WBGene00016846.1 transcript:C50F7.6b.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:C50F7.6) HSP 1 Score: 51.9878 bits (123), Expect = 1.144e-6 Identity = 23/55 (41.82%), Postives = 38/55 (69.09%), Query Frame = 2
Query: 2300 EWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
+W VK+R DG+RYI +RPIR++++K RE ++ ER + ++D ++L L R T
Sbjct: 200 KWKVKRRCDGSRYIVKRPIRSQILKKREAQVYRERAPISTDDDAMSELKLGRYHT 254
BLAST of PDZ ring finger protein 4 vs. Ensembl Fly
Match: Slip1 (gene:FBgn0024728 transcript:FBtr0310536) HSP 1 Score: 54.6842 bits (130), Expect = 4.070e-7 Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 2
Query: 2258 NAQLIKSDKLDS-KMEWVVKKRPDGTRYITRRPIRNR--MMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
NA L+ + + M W VK+RPDGTRYI +RP+RNR + + + NE TT E+D +++ + R WT
Sbjct: 569 NATLLNGESAEEIPMVWKVKRRPDGTRYIVKRPVRNRPQVALRKNMRYNE---VTTTEDDTISEVKIGRYWT 637
BLAST of PDZ ring finger protein 4 vs. Ensembl Fly
Match: Slip1 (gene:FBgn0024728 transcript:FBtr0089090) HSP 1 Score: 54.6842 bits (130), Expect = 4.338e-7 Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 2
Query: 2297 MEWVVKKRPDGTRYITRRPIRNR--MMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
M W VK+RPDGTRYI +RP+RNR + + + NE TT E+D +++ + R WT
Sbjct: 689 MVWKVKRRPDGTRYIVKRPVRNRPQVALRKNMRYNE---VTTTEDDTISEVKIGRYWT 743
BLAST of PDZ ring finger protein 4 vs. Ensembl Zebrafish
Match: BX640588.1 (pep chromosome:GRCz11:CHR_ALT_CTG6_1_42:44244096:44258433:-1 gene:ENSDARG00000115237.1 transcript:ENSDART00000180410.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX640588.1) HSP 1 Score: 70.0922 bits (170), Expect = 8.609e-12 Identity = 68/233 (29.18%), Postives = 113/233 (48.50%), Query Frame = 2
Query: 1796 LPPASGSNTS-AYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSST---RTKYNLSNSDQKS---TSGSSTNNLTESRMASSTILHQFSST--GFPEIP-QHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
LP S ++S AY+TG +S RS+PLT+EL P S +R N + + S++ R L + Q++ T G T L ES + + + + P+ P +H+ +Y Y L + K + + SQ+ + D + S L KMEW VK R DGTRYIT+RP+R++++K+R ++ EER+ T ++D +++ + R W+
Sbjct: 503 LPEKSDKDSSSAYNTG-ESCRSTPLTLELSPDNS----------LRRGNESQAEAGASSSTSGPSRILKPLLSPVQEACSPTRGRPTL-LKESEVGTQPEVRERKGGRHAHPQSPYKHAHIPAHAQHYQSYMQLIQQ-----KSVEYAQSQMSLVSMCRDP-------VTSADLGPKMEWKVKIRSDGTRYITKRPVRDKLLKERALRIREERSGMTTDDDAVSEMKMGRYWS 711 HSP 2 Score: 65.855 bits (159), Expect = 1.897e-10 Identity = 48/159 (30.19%), Postives = 82/159 (51.57%), Query Frame = 2
Query: 1091 FGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNII--SKFNGNTNRNGNYSSELPPLEEVEYASV-----------YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSE 1522
G T+ Y D E+ +Y+S I+PNS+A K+ IR GD+I+QIN I++ ++ + V+L + V LLL RP I + + + + LE+ + ++ ++E G T+ + +KDSG+GR TD++ + +ESSE
Sbjct: 183 LGFTVCYRT---DDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNREEAVALLTSEEHPNVCLLLARPEIQLDEGWMDDDRNDYLDDLHMDMLEQQHHQAMQFTASMLQQKKHEEDGGTTDTATLLSHHHEKDSGVGR-TDDSTRNDESSE 337 HSP 3 Score: 53.9138 bits (128), Expect = 8.529e-7 Identity = 43/127 (33.86%), Postives = 60/127 (47.24%), Query Frame = 2
Query: 518 YVPLIKFVHTRLNYYY*NRMDFIIL--KVNGKDLSTASHQQVLEAFNSASEPIFVEVARRY------------SISNTSVKPTIPF--MMDLSVNIPTQST-----NDYILPYPSSVFGQPLHGYIN 835
YVP++ + N+ ++ L +VNGKDLS A+H Q +EAF A EPI V+V RR + + S + I F +M LS +PT ST Y+LP S P H Y +
Sbjct: 41 YVPVVFILGL-------NQCSYVCLFQQVNGKDLSKATHDQAVEAFRMAKEPIMVQVLRRAPRPKPTGPTGEGQVVDISTQTDITFQHIMALS-KLPTSSTPVDVLEQYLLPEGHS----PAHEYFD 155
BLAST of PDZ ring finger protein 4 vs. Ensembl Zebrafish
Match: pdzrn3b (PDZ domain containing RING finger 3b [Source:NCBI gene;Acc:100005518]) HSP 1 Score: 70.4774 bits (171), Expect = 8.666e-12 Identity = 68/233 (29.18%), Postives = 113/233 (48.50%), Query Frame = 2
Query: 1796 LPPASGSNTS-AYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSST---RTKYNLSNSDQKS---TSGSSTNNLTESRMASSTILHQFSST--GFPEIP-QHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
LP S ++S AY+TG +S RS+PLT+EL P S +R N + + S++ R L + Q++ T G T L ES + + + + P+ P +H+ +Y Y L + K + + SQ+ + D + S L KMEW VK R DGTRYIT+RP+R++++K+R ++ EER+ T ++D +++ + R W+
Sbjct: 713 LPEKSDKDSSSAYNTG-ESCRSTPLTLELSPDNS----------LRRGNESQAEAGASSSTSGPSRILKPLLSPVQEACSPTRGRPTL-LKESEVGTQPEVRERKGGRHAHPQSPYKHAHIPAHAQHYQSYMQLIQQ-----KSVEYAQSQMSLVSMCRDP-------VTSADLGPKMEWKVKIRSDGTRYITKRPVRDKLLKERALRIREERSGMTTDDDAVSEMKMGRYWS 921 HSP 2 Score: 67.3958 bits (163), Expect = 6.517e-11 Identity = 47/146 (32.19%), Postives = 73/146 (50.00%), Query Frame = 2
Query: 1091 FGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSE 1522
G T+ Y D E+ +Y+S I+PNS+A K+ IR GD+I+QIN I++ ++ + V+L + V LLL RP I K ++E G T+ + +KDSG+GR TD++ + +ESSE
Sbjct: 432 LGFTVCYRT---DDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNREEAVALLTSEEHPNVCLLLARPEIQKK--------------------------HEEDGGTTDTATLLSHHHEKDSGVGR-TDDSTRNDESSE 547 HSP 3 Score: 55.8398 bits (133), Expect = 2.858e-7 Identity = 39/102 (38.24%), Postives = 51/102 (50.00%), Query Frame = 2
Query: 587 ILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRY------------SISNTSVKPTIPF--MMDLSVNIPTQST-----NDYILPYPSSVFGQPLHGYIN 835
I++VNGKDLS A+H Q +EAF A EPI V+V RR + + S + I F +M LS +PT ST Y+LP S P H Y +
Sbjct: 303 IMEVNGKDLSKATHDQAVEAFRMAKEPIMVQVLRRAPRPKPTGPTGEGQVVDISTQTDITFQHIMALS-KLPTSSTPVDVLEQYLLPEGHS----PAHEYFD 399
BLAST of PDZ ring finger protein 4 vs. Ensembl Zebrafish
Match: pdzrn3b (PDZ domain containing RING finger 3b [Source:NCBI gene;Acc:100005518]) HSP 1 Score: 70.4774 bits (171), Expect = 8.944e-12 Identity = 68/233 (29.18%), Postives = 113/233 (48.50%), Query Frame = 2
Query: 1796 LPPASGSNTS-AYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSST---RTKYNLSNSDQKS---TSGSSTNNLTESRMASSTILHQFSST--GFPEIP-QHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
LP S ++S AY+TG +S RS+PLT+EL P S +R N + + S++ R L + Q++ T G T L ES + + + + P+ P +H+ +Y Y L + K + + SQ+ + D + S L KMEW VK R DGTRYIT+RP+R++++K+R ++ EER+ T ++D +++ + R W+
Sbjct: 752 LPEKSDKDSSSAYNTG-ESCRSTPLTLELSPDNS----------LRRGNESQAEAGASSSTSGPSRILKPLLSPVQEACSPTRGRPTL-LKESEVGTQPEVRERKGGRHAHPQSPYKHAHIPAHAQHYQSYMQLIQQ-----KSVEYAQSQMSLVSMCRDP-------VTSADLGPKMEWKVKIRSDGTRYITKRPVRDKLLKERALRIREERSGMTTDDDAVSEMKMGRYWS 960 HSP 2 Score: 65.855 bits (159), Expect = 2.249e-10 Identity = 48/159 (30.19%), Postives = 82/159 (51.57%), Query Frame = 2
Query: 1091 FGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNII--SKFNGNTNRNGNYSSELPPLEEVEYASV-----------YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSE 1522
G T+ Y D E+ +Y+S I+PNS+A K+ IR GD+I+QIN I++ ++ + V+L + V LLL RP I + + + + LE+ + ++ ++E G T+ + +KDSG+GR TD++ + +ESSE
Sbjct: 432 LGFTVCYRT---DDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNREEAVALLTSEEHPNVCLLLARPEIQLDEGWMDDDRNDYLDDLHMDMLEQQHHQAMQFTASMLQQKKHEEDGGTTDTATLLSHHHEKDSGVGR-TDDSTRNDESSE 586 HSP 3 Score: 55.8398 bits (133), Expect = 2.887e-7 Identity = 39/102 (38.24%), Postives = 51/102 (50.00%), Query Frame = 2
Query: 587 ILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRY------------SISNTSVKPTIPF--MMDLSVNIPTQST-----NDYILPYPSSVFGQPLHGYIN 835
I++VNGKDLS A+H Q +EAF A EPI V+V RR + + S + I F +M LS +PT ST Y+LP S P H Y +
Sbjct: 303 IMEVNGKDLSKATHDQAVEAFRMAKEPIMVQVLRRAPRPKPTGPTGEGQVVDISTQTDITFQHIMALS-KLPTSSTPVDVLEQYLLPEGHS----PAHEYFD 399
BLAST of PDZ ring finger protein 4 vs. Ensembl Zebrafish
Match: pdzrn3b (PDZ domain containing RING finger 3b [Source:NCBI gene;Acc:100005518]) HSP 1 Score: 70.4774 bits (171), Expect = 9.156e-12 Identity = 68/233 (29.18%), Postives = 113/233 (48.50%), Query Frame = 2
Query: 1796 LPPASGSNTS-AYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSST---RTKYNLSNSDQKS---TSGSSTNNLTESRMASSTILHQFSST--GFPEIP-QHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
LP S ++S AY+TG +S RS+PLT+EL P S +R N + + S++ R L + Q++ T G T L ES + + + + P+ P +H+ +Y Y L + K + + SQ+ + D + S L KMEW VK R DGTRYIT+RP+R++++K+R ++ EER+ T ++D +++ + R W+
Sbjct: 723 LPEKSDKDSSSAYNTG-ESCRSTPLTLELSPDNS----------LRRGNESQAEAGASSSTSGPSRILKPLLSPVQEACSPTRGRPTL-LKESEVGTQPEVRERKGGRHAHPQSPYKHAHIPAHAQHYQSYMQLIQQ-----KSVEYAQSQMSLVSMCRDP-------VTSADLGPKMEWKVKIRSDGTRYITKRPVRDKLLKERALRIREERSGMTTDDDAVSEMKMGRYWS 931 HSP 2 Score: 66.2402 bits (160), Expect = 1.770e-10 Identity = 48/159 (30.19%), Postives = 82/159 (51.57%), Query Frame = 2
Query: 1091 FGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNII--SKFNGNTNRNGNYSSELPPLEEVEYASV-----------YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSE 1522
G T+ Y D E+ +Y+S I+PNS+A K+ IR GD+I+QIN I++ ++ + V+L + V LLL RP I + + + + LE+ + ++ ++E G T+ + +KDSG+GR TD++ + +ESSE
Sbjct: 403 LGFTVCYRT---DDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNREEAVALLTSEEHPNVCLLLARPEIQLDEGWMDDDRNDYLDDLHMDMLEQQHHQAMQFTASMLQQKKHEEDGGTTDTATLLSHHHEKDSGVGR-TDDSTRNDESSE 557 HSP 3 Score: 55.8398 bits (133), Expect = 2.544e-7 Identity = 39/102 (38.24%), Postives = 51/102 (50.00%), Query Frame = 2
Query: 587 ILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRY------------SISNTSVKPTIPF--MMDLSVNIPTQST-----NDYILPYPSSVFGQPLHGYIN 835
I++VNGKDLS A+H Q +EAF A EPI V+V RR + + S + I F +M LS +PT ST Y+LP S P H Y +
Sbjct: 274 IMEVNGKDLSKATHDQAVEAFRMAKEPIMVQVLRRAPRPKPTGPTGEGQVVDISTQTDITFQHIMALS-KLPTSSTPVDVLEQYLLPEGHS----PAHEYFD 370
BLAST of PDZ ring finger protein 4 vs. Ensembl Zebrafish
Match: PDZD4 (si:ch73-162j3.4 [Source:ZFIN;Acc:ZDB-GENE-090313-136]) HSP 1 Score: 68.9366 bits (167), Expect = 1.850e-11 Identity = 51/161 (31.68%), Postives = 79/161 (49.07%), Query Frame = 2
Query: 1064 LRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECDSNQTS 1543
L K ++ GLT+ Y D + +Y+ + PNS+A K+ IR GD+ILQIN +DV ++ + V++ ++ + LLL RP+ SK + + + P L NN + DSG+GR TDE+ + EESSE + TS
Sbjct: 127 LYKSCQQDKLGLTVCYRT---DDEEDLGIYVGEVNPNSIAAKDGRIREGDRILQINGVDVQNREEAVAILTREDSTNISLLLARPHHRSKASSLLSDVSGIRANRPNLWHTAL-----------NNSQEL-----DSGVGR-TDESTRCEESSELAEDATS 267 HSP 2 Score: 58.151 bits (139), Expect = 4.410e-8 Identity = 22/54 (40.74%), Postives = 38/54 (70.37%), Query Frame = 2
Query: 2303 WVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
W VK R DG+RY+ +RP+R+R++K R K+ EER+ T ++D +++ + R W+
Sbjct: 539 WKVKIRSDGSRYVAKRPVRDRLLKARAMKIREERSGMTTDDDAVSEMKMGRYWS 592
BLAST of PDZ ring finger protein 4 vs. Ensembl Xenopus
Match: frem2 (FRAS1 related extracellular matrix protein 2 [Source:Xenbase;Acc:XB-GENE-1004431]) HSP 1 Score: 78.9518 bits (193), Expect = 2.998e-14 Identity = 67/240 (27.92%), Postives = 116/240 (48.33%), Query Frame = 2
Query: 1796 LPPASGSNTS-AYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSD--------QKSTSGSSTNNLTESRMASSTIL-HQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIK-------SDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
LP S ++S AY+TG +S RS+PLT+E+ P S +R N + D+ S R L ++D ++ TS + + ++ +++ S ++ S IP H+ +Y Y L I+Q + VE Y +Q+ S+ ++ +MEW VK R DGTRYIT+RP+R++++K+R K+ EER+ T ++D +++ + R W+
Sbjct: 745 LPEKSDKDSSSAYNTG-ESCRSTPLTLEISPDNS----------LRRKNLQTHGDSRESSPARYHLPLKDTDPSKQAENKERKTSDAGKSQTSQDKLSGSYAPPYRHSPYKHAHIPAHA------QHYQSYMQL-----------------IQQKSAVE---YAQSQMSLVSMCKDLSNSIEPRMEWKVKVRSDGTRYITKRPVRDKLLKERAIKIKEERSGMTTDDDAISEMKMGRYWS 947 HSP 2 Score: 69.707 bits (169), Expect = 1.908e-11 Identity = 52/168 (30.95%), Postives = 88/168 (52.38%), Query Frame = 2
Query: 1064 LRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLE-VKLLLGRPNII--SKFNGNTNRNGNYSSELPPLEEVEYASV-----------YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSE 1522
L + S++ GLT+ Y D ++ +Y+S I+PNS+A K+ IR GD+I+QIN IDV++ + V+L + V LL+ RP + + + + + LEE + ++ +E G T+ + ++KDSG+GR TDE+ + +ESSE
Sbjct: 421 LYRMNSQDKLGLTVCYRT---DDEDDTGIYVSEIDPNSIAAKDGRIREGDRIIQINGIDVNNHEEAVALLTSEDTKNVFLLVARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASMLQQKKLEEDGGTTDTATLLSNHLEKDSGVGR-TDESTRNDESSE 584 HSP 3 Score: 52.373 bits (124), Expect = 4.816e-6 Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 2
Query: 587 ILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSISNTSVKPTIPFMMDLSVNIPTQSTNDYI 784
I++VNGKDLS A+H Q +EAF +A EPI V+V RR + P ++D+ T+ T ++I
Sbjct: 301 IIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKVFSPPADVQLLDMGTQ--TEITFEHI 364
BLAST of PDZ ring finger protein 4 vs. Ensembl Xenopus
Match: pip5k1c (phosphatidylinositol-4-phosphate 5-kinase, type I, gamma [Source:Xenbase;Acc:XB-GENE-5823861]) HSP 1 Score: 77.411 bits (189), Expect = 6.652e-14 Identity = 68/235 (28.94%), Postives = 117/235 (49.79%), Query Frame = 2
Query: 1796 LPPASGSNTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSS--TNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQ---IEQNNCVEDHEYINAQL------IKSDKL-DSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
L + ++SAY+T A+S RS+PL ++ P S +S+ + +N + ++F+ ++ NS KST+G N ++++ S + Q + EI HY Y F P S I+QN+ VE Y +QL ++ +L + +MEW VK R DGTRYIT+RP+R++++K+R K+ EER+ T ++D +++ + R W+
Sbjct: 466 LERSDKDSSSAYNT-AESCRSTPLNIDRSPDSSLQRIISI-TNKKNLRSTIVTNHFSSGIN----SIENSPSKSTAGGQRIINEFQDTKLQCSRLSEQ-KNQSIEEI----------HYLSPYHSSEYKFGNLPVHARHYQSYMQLIQQNSAVE---YTQSQLNLVTMCKETQRLTEPRMEWKVKIRSDGTRYITKRPVRDKLLKERALKIKEERSGMTTDDDTMSEMKMGRYWS 680 HSP 2 Score: 65.855 bits (159), Expect = 3.013e-10 Identity = 48/167 (28.74%), Postives = 82/167 (49.10%), Query Frame = 2
Query: 1079 SREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF--QKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELP--------------PLEEVEYASVYDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSECD 1528
S++ GLT+ Y D ++ +Y+S ++PN A ++ IR GD+ILQIN D+ ++ + V+L +C + LL+ RP + + + EL EV+ +E +G T+ + +KDSG+GR TDE+ + +ESSE +
Sbjct: 151 SQDRLGLTVCYRT---DDEEDTGIYVSEVDPNGTAARDGRIREGDRILQINGQDIQNREEAVALLSSDECK-RITLLVARPELQLDEGWMDDERNEFLEELNNQKLGEQHNEAMQYKANEVQQQKKREEEDGTTDTATSSSNNHEKDSGVGR-TDESQRNDESSEVE 312
BLAST of PDZ ring finger protein 4 vs. Ensembl Xenopus
Match: frem2 (FRAS1 related extracellular matrix protein 2 [Source:Xenbase;Acc:XB-GENE-1004431]) HSP 1 Score: 72.4034 bits (176), Expect = 3.009e-12 Identity = 67/253 (26.48%), Postives = 116/253 (45.85%), Query Frame = 2
Query: 1796 LPPASGSNTS-AYSTGADSTRSSPLTMELPPTIS-------------SASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSD--------QKSTSGSSTNNLTESRMASSTIL-HQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIK-------SDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
LP S ++S AY+TG +S RS+PLT+E+ P S + S N + D+ S R L ++D ++ TS + + ++ +++ S ++ S IP H+ +Y Y L I+Q + VE Y +Q+ S+ ++ +MEW VK R DGTRYIT+RP+R++++K+R K+ EER+ T ++D +++ + R W+
Sbjct: 745 LPEKSDKDSSSAYNTG-ESCRSTPLTLEISPDNSLRRVADVINCPNAEGAAGSAPCSAPQKNLQTHGDSRESSPARYHLPLKDTDPSKQAENKERKTSDAGKSQTSQDKLSGSYAPPYRHSPYKHAHIPAHA------QHYQSYMQL-----------------IQQKSAVE---YAQSQMSLVSMCKDLSNSIEPRMEWKVKVRSDGTRYITKRPVRDKLLKERAIKIKEERSGMTTDDDAISEMKMGRYWS 970 HSP 2 Score: 70.0922 bits (170), Expect = 1.693e-11 Identity = 52/168 (30.95%), Postives = 88/168 (52.38%), Query Frame = 2
Query: 1064 LRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLE-VKLLLGRPNII--SKFNGNTNRNGNYSSELPPLEEVEYASV-----------YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSE 1522
L + S++ GLT+ Y D ++ +Y+S I+PNS+A K+ IR GD+I+QIN IDV++ + V+L + V LL+ RP + + + + + LEE + ++ +E G T+ + ++KDSG+GR TDE+ + +ESSE
Sbjct: 421 LYRMNSQDKLGLTVCYRT---DDEDDTGIYVSEIDPNSIAAKDGRIREGDRIIQINGIDVNNHEEAVALLTSEDTKNVFLLVARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASMLQQKKLEEDGGTTDTATLLSNHLEKDSGVGR-TDESTRNDESSE 584 HSP 3 Score: 52.373 bits (124), Expect = 4.601e-6 Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 2
Query: 587 ILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSISNTSVKPTIPFMMDLSVNIPTQSTNDYI 784
I++VNGKDLS A+H Q +EAF +A EPI V+V RR + P ++D+ T+ T ++I
Sbjct: 301 IIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKVFSPPADVQLLDMGTQ--TEITFEHI 364
BLAST of PDZ ring finger protein 4 vs. Ensembl Xenopus
Match: frem2 (FRAS1 related extracellular matrix protein 2 [Source:Xenbase;Acc:XB-GENE-1004431]) HSP 1 Score: 72.4034 bits (176), Expect = 3.283e-12 Identity = 67/253 (26.48%), Postives = 116/253 (45.85%), Query Frame = 2
Query: 1796 LPPASGSNTS-AYSTGADSTRSSPLTMELPPTIS-------------SASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSD--------QKSTSGSSTNNLTESRMASSTIL-HQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIK-------SDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
LP S ++S AY+TG +S RS+PLT+E+ P S + S N + D+ S R L ++D ++ TS + + ++ +++ S ++ S IP H+ +Y Y L I+Q + VE Y +Q+ S+ ++ +MEW VK R DGTRYIT+RP+R++++K+R K+ EER+ T ++D +++ + R W+
Sbjct: 706 LPEKSDKDSSSAYNTG-ESCRSTPLTLEISPDNSLRRVADVINCPNAEGAAGSAPCSAPQKNLQTHGDSRESSPARYHLPLKDTDPSKQAENKERKTSDAGKSQTSQDKLSGSYAPPYRHSPYKHAHIPAHA------QHYQSYMQL-----------------IQQKSAVE---YAQSQMSLVSMCKDLSNSIEPRMEWKVKVRSDGTRYITKRPVRDKLLKERAIKIKEERSGMTTDDDAISEMKMGRYWS 931 HSP 2 Score: 71.2478 bits (173), Expect = 7.825e-12 Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = 2
Query: 1064 LRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLE-VKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSE 1522
L + S++ GLT+ Y D ++ +Y+S I+PNS+A K+ IR GD+I+QIN IDV++ + V+L + V LL+ RP + K +E G T+ + ++KDSG+GR TDE+ + +ESSE
Sbjct: 421 LYRMNSQDKLGLTVCYRT---DDEDDTGIYVSEIDPNSIAAKDGRIREGDRIIQINGIDVNNHEEAVALLTSEDTKNVFLLVARPELQKKL--------------------------EEDGGTTDTATLLSNHLEKDSGVGR-TDESTRNDESSE 545 HSP 3 Score: 52.373 bits (124), Expect = 4.798e-6 Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 2
Query: 587 ILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSISNTSVKPTIPFMMDLSVNIPTQSTNDYI 784
I++VNGKDLS A+H Q +EAF +A EPI V+V RR + P ++D+ T+ T ++I
Sbjct: 301 IIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKVFSPPADVQLLDMGTQ--TEITFEHI 364
BLAST of PDZ ring finger protein 4 vs. Ensembl Xenopus
Match: frem2 (FRAS1 related extracellular matrix protein 2 [Source:Xenbase;Acc:XB-GENE-1004431]) HSP 1 Score: 72.4034 bits (176), Expect = 3.439e-12 Identity = 67/253 (26.48%), Postives = 116/253 (45.85%), Query Frame = 2
Query: 1796 LPPASGSNTS-AYSTGADSTRSSPLTMELPPTIS-------------SASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSD--------QKSTSGSSTNNLTESRMASSTIL-HQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIK-------SDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
LP S ++S AY+TG +S RS+PLT+E+ P S + S N + D+ S R L ++D ++ TS + + ++ +++ S ++ S IP H+ +Y Y L I+Q + VE Y +Q+ S+ ++ +MEW VK R DGTRYIT+RP+R++++K+R K+ EER+ T ++D +++ + R W+
Sbjct: 716 LPEKSDKDSSSAYNTG-ESCRSTPLTLEISPDNSLRRVADVINCPNAEGAAGSAPCSAPQKNLQTHGDSRESSPARYHLPLKDTDPSKQAENKERKTSDAGKSQTSQDKLSGSYAPPYRHSPYKHAHIPAHA------QHYQSYMQL-----------------IQQKSAVE---YAQSQMSLVSMCKDLSNSIEPRMEWKVKVRSDGTRYITKRPVRDKLLKERAIKIKEERSGMTTDDDAISEMKMGRYWS 941 HSP 2 Score: 70.0922 bits (170), Expect = 1.565e-11 Identity = 52/168 (30.95%), Postives = 88/168 (52.38%), Query Frame = 2
Query: 1064 LRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLE-VKLLLGRPNII--SKFNGNTNRNGNYSSELPPLEEVEYASV-----------YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSE 1522
L + S++ GLT+ Y D ++ +Y+S I+PNS+A K+ IR GD+I+QIN IDV++ + V+L + V LL+ RP + + + + + LEE + ++ +E G T+ + ++KDSG+GR TDE+ + +ESSE
Sbjct: 392 LYRMNSQDKLGLTVCYRT---DDEDDTGIYVSEIDPNSIAAKDGRIREGDRIIQINGIDVNNHEEAVALLTSEDTKNVFLLVARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASMLQQKKLEEDGGTTDTATLLSNHLEKDSGVGR-TDESTRNDESSE 555 HSP 3 Score: 52.373 bits (124), Expect = 4.649e-6 Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 2
Query: 587 ILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSISNTSVKPTIPFMMDLSVNIPTQSTNDYI 784
I++VNGKDLS A+H Q +EAF +A EPI V+V RR + P ++D+ T+ T ++I
Sbjct: 272 IIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKVFSPPADVQLLDMGTQ--TEITFEHI 335
BLAST of PDZ ring finger protein 4 vs. Ensembl Mouse
Match: Pdzrn4 (PDZ domain containing RING finger 4 [Source:MGI Symbol;Acc:MGI:3056996]) HSP 1 Score: 73.9442 bits (180), Expect = 7.778e-13 Identity = 70/238 (29.41%), Postives = 111/238 (46.64%), Query Frame = 2
Query: 1817 NTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQ---------------FSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQL-----IKSDKLDS--KMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
++SAY+T A+S RS+PLT++ P S ++L + N + + + T+ S + + G S +L E + SS +L Q SS + IP H+ +Y Y L I+Q + VE Y +QL K + S KMEW VK R DGTRYIT+RP+R+R++K+R K+ EER+ T ++D +++ + R W+
Sbjct: 713 SSSAYNT-AESCRSTPLTVDRSPDSSLPRMINLT--NKKNLRSMMTAHQSPPRQSTREYTSTKVKATDEGCSVESL-EKGLESSQLLDQEHTVSEHPPYLSPYHSSSYRYANIPAHA------RHYQSYMQL-----------------IQQKSAVE---YAQSQLSLVSMCKESQRGSEPKMEWKVKIRSDGTRYITKRPVRDRLLKERALKIKEERSGMTTDDDTMSEMKMGRYWS 920 HSP 2 Score: 67.781 bits (164), Expect = 5.685e-11 Identity = 54/174 (31.03%), Postives = 86/174 (49.43%), Query Frame = 2
Query: 1079 SREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF--QKCGLEVKLLLGRPNI-----------------------ISKFNGNTNRNGNYSSEL-PPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSE 1522
S+E GLT+ Y D ++ +Y+S ++PNS+A K+ IR GD+ILQIN D+ ++ + V+L +C + LL+ RP++ N R +SEL P ++ E D ++NN+ +KDSG+GR TDE+ + +ESSE
Sbjct: 391 SQEKLGLTVCYRT---DDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDIQNREEAVALLSSDECK-RIVLLIARPDMQLDEGWLEDERNEFLEELNSELLEEDHNEGAQRT---ASELQQPKKQEEEEGTTDTATSSSNNQ------EKDSGVGR-TDESLRNDESSE 550 HSP 3 Score: 51.2174 bits (121), Expect = 7.990e-6 Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 2
Query: 587 ILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSISNTSVKPTIPFMMDLSVNIPTQSTNDYI 784
I+ VNG+DLS A+H++ +EAF +A EPI V+V RR +S +PT + M V + ST I
Sbjct: 260 IIAVNGRDLSKATHEEAVEAFRTAKEPIVVQVLRRTPLS----RPT--YGMTPEVQLTNASTQTDI 319
BLAST of PDZ ring finger protein 4 vs. Ensembl Mouse
Match: Pdzrn4 (PDZ domain containing RING finger 4 [Source:MGI Symbol;Acc:MGI:3056996]) HSP 1 Score: 73.1738 bits (178), Expect = 1.218e-12 Identity = 70/238 (29.41%), Postives = 111/238 (46.64%), Query Frame = 2
Query: 1817 NTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQ---------------FSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQL-----IKSDKLDS--KMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
++SAY+T A+S RS+PLT++ P S ++L + N + + + T+ S + + G S +L E + SS +L Q SS + IP H+ +Y Y L I+Q + VE Y +QL K + S KMEW VK R DGTRYIT+RP+R+R++K+R K+ EER+ T ++D +++ + R W+
Sbjct: 474 SSSAYNT-AESCRSTPLTVDRSPDSSLPRMINLT--NKKNLRSMMTAHQSPPRQSTREYTSTKVKATDEGCSVESL-EKGLESSQLLDQEHTVSEHPPYLSPYHSSSYRYANIPAHA------RHYQSYMQL-----------------IQQKSAVE---YAQSQLSLVSMCKESQRGSEPKMEWKVKIRSDGTRYITKRPVRDRLLKERALKIKEERSGMTTDDDTMSEMKMGRYWS 681 HSP 2 Score: 68.5514 bits (166), Expect = 3.170e-11 Identity = 54/171 (31.58%), Postives = 88/171 (51.46%), Query Frame = 2
Query: 1079 SREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF--QKCGLEVKLLLGRPNI-ISKFNGNTNRNGNY-------------------SSEL-PPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSE 1522
S+E GLT+ Y D ++ +Y+S ++PNS+A K+ IR GD+ILQIN D+ ++ + V+L +C + LL+ RP++ + + RN +SEL P ++ E D ++NN+ +KDSG+GR TDE+ + +ESSE
Sbjct: 152 SQEKLGLTVCYRT---DDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDIQNREEAVALLSSDECK-RIVLLIARPDMQLDEGWLEDERNEFLEELNSELLEEDHNEGAQRTASELQQPKKQEEEEGTTDTATSSSNNQ------EKDSGVGR-TDESLRNDESSE 311
BLAST of PDZ ring finger protein 4 vs. Ensembl Mouse
Match: Pdzrn3 (PDZ domain containing RING finger 3 [Source:MGI Symbol;Acc:MGI:1933157]) HSP 1 Score: 70.4774 bits (171), Expect = 4.921e-12 Identity = 56/172 (32.56%), Postives = 91/172 (52.91%), Query Frame = 2
Query: 1064 LRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNII--SKFNGNTNRNGNYSSELPPLEEVEY------ASV-----YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSECDSN 1534
L + S++ GLT+ Y D + +YIS I+PNS+A K+ IR GD+I+QIN I+V ++ + V+L + LL+ RP + + + + + LEE + ASV ++E G T+ + Q +KDSG+GR TDE+ + +ESSE ++N
Sbjct: 139 LYRMNSQDKLGLTVCYRT---DDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASVLQQKKHEEDGGTTDTATILSNQHEKDSGVGR-TDESTRNDESSEQENN 306
BLAST of PDZ ring finger protein 4 vs. Ensembl Mouse
Match: Pdzrn3 (PDZ domain containing RING finger 3 [Source:MGI Symbol;Acc:MGI:1933157]) HSP 1 Score: 69.707 bits (169), Expect = 1.642e-11 Identity = 56/172 (32.56%), Postives = 91/172 (52.91%), Query Frame = 2
Query: 1064 LRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNII--SKFNGNTNRNGNYSSELPPLEEVEY------ASV-----YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSECDSN 1534
L + S++ GLT+ Y D + +YIS I+PNS+A K+ IR GD+I+QIN I+V ++ + V+L + LL+ RP + + + + + LEE + ASV ++E G T+ + Q +KDSG+GR TDE+ + +ESSE ++N
Sbjct: 422 LYRMNSQDKLGLTVCYRT---DDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASVLQQKKHEEDGGTTDTATILSNQHEKDSGVGR-TDESTRNDESSEQENN 589 HSP 2 Score: 69.3218 bits (168), Expect = 1.849e-11 Identity = 27/63 (42.86%), Postives = 47/63 (74.60%), Query Frame = 2
Query: 2276 SDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
S+ ++ +MEW VK R DGTRYIT+RP+R+R++++R K+ EER+ T ++D +++ + R W+
Sbjct: 909 SNSVEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGLTTDDDAMSEMKMGRYWS 971 HSP 3 Score: 51.6026 bits (122), Expect = 5.607e-6 Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 2
Query: 587 ILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARR 691
I++VNGKDLS A+H Q +EAF +A EPI V+V RR
Sbjct: 304 IIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRR 338
BLAST of PDZ ring finger protein 4 vs. Ensembl Mouse
Match: Pdzd4 (PDZ domain containing 4 [Source:MGI Symbol;Acc:MGI:2443483]) HSP 1 Score: 64.3142 bits (155), Expect = 5.494e-10 Identity = 25/57 (43.86%), Postives = 41/57 (71.93%), Query Frame = 2
Query: 2294 KMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
+MEW VK R DGTRY+ +RP+R+R++K R K+ EER+ T ++D +++ + R W+
Sbjct: 624 RMEWKVKVRSDGTRYVAKRPVRDRLLKARALKIREERSGMTTDDDAVSEMKMGRYWS 680 HSP 2 Score: 63.1586 bits (152), Expect = 1.324e-9 Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 2
Query: 1091 FGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRP--NIISKFN-----------GNTNRNGNYSSEL--PPLEEV--EYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECD 1528
GL + Y D +Y+ + PNS+A K+ IR GD+I+QIN +DV ++ + V++ Q+ + LL+ RP + ++ G+ N + +L PP++++ + D G N++ D DSG+GR TDE+ + EESSE D
Sbjct: 148 LGLMVCYRTDEEEDLG---IYVGEVNPNSIAAKDGRIREGDRIIQINGMDVQNREEAVAILSQEENTNISLLVARPESQLAKRWKDSDRDDFLDDFGSENEGDLRARKLKSPPVQQIGNDEKGAPDGGPGLNNSQ------DLDSGVGR-TDESTRNEESSEHD 301
BLAST of PDZ ring finger protein 4 vs. UniProt/SwissProt
Match: sp|Q6ZMN7|PZRN4_HUMAN (PDZ domain-containing RING finger protein 4 OS=Homo sapiens OX=9606 GN=PDZRN4 PE=2 SV=3) HSP 1 Score: 92.0485 bits (227), Expect = 1.476e-17 Identity = 111/365 (30.41%), Postives = 158/365 (43.29%), Query Frame = 2
Query: 587 ILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSIS-------------NTSVKPTIPF--MMDLS-VNIPTQSTNDYILPYPSSVFGQPLHGYINSSQKTNQINNHTDSNHSLSS-----YSNNCALKSFLNDAIKNRD-DYSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF--QKCGLEVKLLLGRPNI-ISKFNGNTNRNGNYSSEL-------------PPLEEVEYASVYDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSEC-----DSNQTSLK 1549
I++VNGKDLS A+H++ +EAF +A EPI V+V RR +S N S + I F +M L+ + PT D I P+ S DS HSL Y +N + S DA + D +Y EV L + S+E GLT+ Y D ++ +Y+S ++PNS+A K+ IR GD+ILQIN DV ++ + V+L +C + LL+ RP I + + RN P EVE +E EG T+ + +KDSG+GR TDE+ + +ESSE D N TSLK
Sbjct: 279 IMEVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRTPLSRPAYGMASEVQLMNASTQTDITFEHIMALAKLRPPTPPVPD-ICPFLLS-----------------------DSCHSLHPMEHEFYEDNEYISSLPADADRTEDFEYE-------------------------------EVELCRVSSQEKLGLTVCYRT---DDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQNREEAVALLSNDECK-RIVLLVARPEIQLDEGWLEDERNEFLEELNLEMLEEEHNEAMQPTANEVEQPKKQEEEEGTTDTATSSSNNHEKDSGVGR-TDESLRNDESSEQENAAEDPNSTSLK 583 HSP 2 Score: 72.0182 bits (175), Expect = 2.219e-11 Identity = 69/235 (29.36%), Postives = 113/235 (48.09%), Query Frame = 2
Query: 1817 NTSAYSTGADSTRSSPLTMELPPTISSASFLSL--KIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRM-----ASSTIL-----HQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQL------IKSDKL-DSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
++SAY+T A+S RS+PLT++ P S ++L K ++R+ + S T ++Q ++ S L S++ A S + + SS + IP H+ +Y Y L I+Q + VE Y +QL +S K + KMEW VK R DGTRYIT+RP+R+R++K+R K+ EER+ T ++D +++ + R W+
Sbjct: 735 SSSAYNT-AESCRSTPLTVDRSPDSSLPRVINLTNKKNLRSTMAATQSSSGQSSKESTSTKAKTTEQGCSAESKEKVLEGSKLPDQEKAVSEHIPYLSPYHSSSYRYANIPAHA------RHYQSYMQL-----------------IQQKSAVE---YAQSQLSLVSMCKESQKCSEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWS 942
BLAST of PDZ ring finger protein 4 vs. UniProt/SwissProt
Match: sp|Q9UPQ7|PZRN3_HUMAN (E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens OX=9606 GN=PDZRN3 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 3.707e-11 Identity = 57/172 (33.14%), Postives = 91/172 (52.91%), Query Frame = 2
Query: 1064 LRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNII--SKFNGNTNRNGNYSSELPPLEEVEY------ASV-----YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSECDSN 1534
L + S++ GLT+ Y D + +YIS I+PNS+A K+ IR GD+I+QIN I+V ++ + V+L + LL+ RP + + + + + LEE + ASV +DE G T+ + Q +KDSG+GR TDE+ + +ESSE ++N
Sbjct: 422 LYRMNSQDKLGLTVCYRT---DDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASVLQQKKHDEDGGTTDTATILSNQHEKDSGVGR-TDESTRNDESSEQENN 589 HSP 2 Score: 67.781 bits (164), Expect = 4.154e-10 Identity = 26/57 (45.61%), Postives = 43/57 (75.44%), Query Frame = 2
Query: 2294 KMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
+MEW VK R DGTRYIT+RP+R+R++++R K+ EER+ T ++D +++ + R W+
Sbjct: 918 RMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGMTTDDDAVSEMKMGRYWS 974
BLAST of PDZ ring finger protein 4 vs. UniProt/SwissProt
Match: sp|E7FDW2|PZR3B_DANRE (E3 ubiquitin-protein ligase PDZRN3-B OS=Danio rerio OX=7955 GN=pdzrn3b PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.752e-11 Identity = 68/233 (29.18%), Postives = 113/233 (48.50%), Query Frame = 2
Query: 1796 LPPASGSNTS-AYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSST---RTKYNLSNSDQKS---TSGSSTNNLTESRMASSTILHQFSST--GFPEIP-QHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
LP S ++S AY+TG +S RS+PLT+EL P S +R N + + S++ R L + Q++ T G T L ES + + + + P+ P +H+ +Y Y L + K + + SQ+ + D + S L KMEW VK R DGTRYIT+RP+R++++K+R ++ EER+ T ++D +++ + R W+
Sbjct: 752 LPEKSDKDSSSAYNTG-ESCRSTPLTLELSPDNS----------LRRGNESQAEAGASSSTSGPSRILKPLLSPVQEACSPTRGRPTL-LKESEVGTQPEVRERKGGRHAHPQSPYKHAHIPAHAQHYQSYMQLIQQ-----KSVEYAQSQMSLVSMCRDP-------VTSADLGPKMEWKVKIRSDGTRYITKRPVRDKLLKERALRIREERSGMTTDDDAVSEMKMGRYWS 960 HSP 2 Score: 65.855 bits (159), Expect = 1.698e-9 Identity = 48/159 (30.19%), Postives = 82/159 (51.57%), Query Frame = 2
Query: 1091 FGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNII--SKFNGNTNRNGNYSSELPPLEEVEYASV-----------YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSE 1522
G T+ Y D E+ +Y+S I+PNS+A K+ IR GD+I+QIN I++ ++ + V+L + V LLL RP I + + + + LE+ + ++ ++E G T+ + +KDSG+GR TD++ + +ESSE
Sbjct: 432 LGFTVCYRT---DDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNREEAVALLTSEEHPNVCLLLARPEIQLDEGWMDDDRNDYLDDLHMDMLEQQHHQAMQFTASMLQQKKHEEDGGTTDTATLLSHHHEKDSGVGR-TDDSTRNDESSE 586
BLAST of PDZ ring finger protein 4 vs. UniProt/SwissProt
Match: sp|Q69ZS0|PZRN3_MOUSE (E3 ubiquitin-protein ligase PDZRN3 OS=Mus musculus OX=10090 GN=Pdzrn3 PE=1 SV=3) HSP 1 Score: 69.707 bits (169), Expect = 1.148e-10 Identity = 56/172 (32.56%), Postives = 91/172 (52.91%), Query Frame = 2
Query: 1064 LRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNII--SKFNGNTNRNGNYSSELPPLEEVEY------ASV-----YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSECDSN 1534
L + S++ GLT+ Y D + +YIS I+PNS+A K+ IR GD+I+QIN I+V ++ + V+L + LL+ RP + + + + + LEE + ASV ++E G T+ + Q +KDSG+GR TDE+ + +ESSE ++N
Sbjct: 422 LYRMNSQDKLGLTVCYRT---DDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASVLQQKKHEEDGGTTDTATILSNQHEKDSGVGR-TDESTRNDESSEQENN 589 HSP 2 Score: 69.3218 bits (168), Expect = 1.294e-10 Identity = 27/63 (42.86%), Postives = 47/63 (74.60%), Query Frame = 2
Query: 2276 SDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
S+ ++ +MEW VK R DGTRYIT+RP+R+R++++R K+ EER+ T ++D +++ + R W+
Sbjct: 909 SNSVEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGLTTDDDAMSEMKMGRYWS 971
BLAST of PDZ ring finger protein 4 vs. UniProt/SwissProt
Match: sp|P68907|PZRN3_RAT (E3 ubiquitin-protein ligase PDZRN3 OS=Rattus norvegicus OX=10116 GN=Pdzrn3 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.188e-10 Identity = 56/172 (32.56%), Postives = 91/172 (52.91%), Query Frame = 2
Query: 1064 LRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNII--SKFNGNTNRNGNYSSELPPLEEVEY------ASV-----YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSECDSN 1534
L + S++ GLT+ Y D + +YIS I+PNS+A K+ IR GD+I+QIN I+V ++ + V+L + LL+ RP + + + + + LEE + ASV ++E G T+ + Q +KDSG+GR TDE+ + +ESSE ++N
Sbjct: 421 LYRMNSQDKLGLTVCYRT---DDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASVLQQKKHEEDGGTTDTATILSNQHEKDSGVGR-TDESTRNDESSEQENN 588 HSP 2 Score: 68.5514 bits (166), Expect = 2.620e-10 Identity = 27/63 (42.86%), Postives = 46/63 (73.02%), Query Frame = 2
Query: 2276 SDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
S+ + +MEW VK R DGTRYIT+RP+R+R++++R K+ EER+ T ++D +++ + R W+
Sbjct: 908 SNSAEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGLTTDDDAMSEMKMGRYWS 970
BLAST of PDZ ring finger protein 4 vs. TrEMBL
Match: A0A023ZS19 (PDZ ring finger protein 4 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 872.463 bits (2253), Expect = 0.000e+0 Identity = 489/490 (99.80%), Postives = 489/490 (99.80%), Query Frame = 2
Query: 734 MMDLSVNIPTQSTNDYILPYPSSVFGQPLHGYINSSQKTNQINNHTDSNHSLSSYSNNCALKSFLNDAIKNRDDYSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECDSNQTSLKKXXXXXXXXXXXXXXXXXXIAQLMQHLAIEYQQLQKLLHGSSDSSIPRVQALPPPTLFQSTSRIVPRMGTKLDPPQTKSPIPLPP-ASGSNTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPM 2200
MMDLSVNIPTQSTNDYILPYPSSVFGQPLHGYINSSQKTNQINNHTDSNHSLSSYSNNCALKSFLNDAIKNRDDYSCGDLLKIEGILEEEEDAELDDDEEQVEIIKEEVVLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECDSNQTSLKKSAQYQSSDSSGSRPDPQQIAQLMQHLAIEYQQLQKLLHGSSDSSIPRVQALPPPTLFQSTSRIVPRMGTKLDPPQTKSPIPLPP ASGSNTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPM
Sbjct: 1 MMDLSVNIPTQSTNDYILPYPSSVFGQPLHGYINSSQKTNQINNHTDSNHSLSSYSNNCALKSFLNDAIKNRDDYSCGDLLKIEGILEEEEDAELDDDEEQVEIIKEEVVLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECDSNQTSLKKSAQYQSSDSSGSRPDPQQIAQLMQHLAIEYQQLQKLLHGSSDSSIPRVQALPPPTLFQSTSRIVPRMGTKLDPPQTKSPIPLPPAASGSNTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPM 490
BLAST of PDZ ring finger protein 4 vs. TrEMBL
Match: A0A1I7RIJ2 (PDZ domain-containing protein OS=Bursaphelenchus xylophilus OX=6326 PE=4 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 9.595e-20 Identity = 131/508 (25.79%), Postives = 214/508 (42.13%), Query Frame = 2
Query: 1091 FGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGL-EVKLLLGRPNIISKFNGNTNRNGNYSSELPPL----EEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTD-----EANKTEESSECDSNQTSLKKXXXXXXXXXXXXXXXXXXIAQLMQHLAIEYQQLQKLLHGSSDSSIPRVQALPPPTLFQSTSRIVPRMGTKLDPPQTKSPIPL-----------PPASG--------SNTSAYSTGADSTRSSP-----LTMELPPTISSASFLSLKIDVRNNN----------YKFLDDNF-NMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKP-----KPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
GLTL Y + D ++++IS IEP SVA ++ IR+GDQILQIN V + + + F + LLL RP+ + ++ L + + + YD ++N EN Q +KDSG+ R TD + + +SS+ ++ ++L K + A+LM E + + L D Q P L + R +M K P+ KSP PL P G + +SAY+TG DS RS+P + +E P LS++ N Y+ +D +++S ++ L + + L ++ +S+ L Q T P ++S + + L K P KP + + S CV + Y K + + EW +K+R DG+RYITRRP+R++++K RE++LN ER + ++D +DL + WT
Sbjct: 118 LGLTLCYGGTADDD---TDIFISQIEPGSVADRDGRIRIGDQILQINGQSVRGRDEAMRQFARGDTNHTSLLLARPSAEQDDDDEDVHVVVEEADPTELTTITKNLHTLAEYD----DSNTENSL-QHEKDSGVSRTTDSEPDVKGVEKGKSSDFENELSALHK----------EMENVRLECARLMNKHMTERKPMNSALVEMLDKI---NQPFIPTKLPAALDRRSNKMSVK---PEMKSPTPLRRTVKEFTAPKTPKMGKVGVTYDETTSSAYNTGGDSCRSTPNKNEYMHVETAPANQRPGTLSIQHRRVEPNLMSPTSSEHPYQTIDTPVASVTSPPVQFRLPQFNFQPPQEQKKGTLRRCQIQASSALPQI--TFRPGDIMYTSPEKLGETIALQQRLLKQSLGDPHASQLKPTTSAVS------CVTSNNYAKYYDNKVAEQPNTYEWKIKRRADGSRYITRRPLRSQVLKAREEQLNRERTGMSTDDDACSDLKTGKFWT 593
BLAST of PDZ ring finger protein 4 vs. TrEMBL
Match: H0X8S8 (PDZ domain containing ring finger 4 OS=Otolemur garnettii OX=30611 GN=PDZRN4 PE=4 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.333e-17 Identity = 99/341 (29.03%), Postives = 157/341 (46.04%), Query Frame = 2
Query: 581 FIILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSISNTSVKPTIPFMMDLSVNIPTQSTNDYILPYPSSVFGQP----LHGYINSSQKTNQINNHTDSNHSLSS-----YSNNCALKSFLNDAIKNRD-DYSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF--QKCGLEVKLLLGRPNI--------------ISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSE 1522
++++ VNGKDLS A+H++ +EAF +A EPI V+V RR +S S T+P + ++ + T T ++I+ P + ++ S DS HSL Y +N + S DA + D +Y EV L + S+E GLT+ Y D ++ +Y+S ++PNS+A K+ IR GD+ILQIN DV ++ + V+L +C + LL+ RP I + + N + + + P EVE +E EG T+ + +KDSG+GR TDE+ + +ESSE
Sbjct: 20 YVLILVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRTPLSRPSYG-TVPEVQLMNASTQTDITFEHIMALAKLRPPTPPVPDICPFLLS-----------DSCHSLHPMEHEFYEDNEYISSLPADADRTEDFEYE-------------------------------EVELCRVSSQEKLGLTVCYRT---DDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQNREEAVALLSSDEC-RRIVLLVARPEIQLDEGWLEDERNEFLEELNLEMLKEQHNEAAQHPASEVEQPKKQEEEEGTTDTATSSSNNHEKDSGVGR-TDESLRNDESSE 312 HSP 2 Score: 72.7886 bits (177), Expect = 3.307e-9 Identity = 66/226 (29.20%), Postives = 104/226 (46.02%), Query Frame = 2
Query: 1817 NTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQ---IEQNNCVEDHEYINAQLI-------KSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
++SAY+T A+S RS+PLT++ P S ++L N K N+ ST S+ S S+ TE ++ + S P+ Q + + Y Y + P S I+Q + VE Y +QL + KMEW VK R DGTRYIT+RP+R+R++K+R K+ EER+ T ++D +++ + R W+
Sbjct: 479 SSSAYNT-AESCRSTPLTVDRSPDSSLPRMINL------TNKK------NLRSTVAAQRSSSGHSGKESASAKTTTTEPGCSTESKEKALESKQLPDQEQTAGEAVP--YLSPYHGSSYRCANIPAHARHYQSYMQLIQQKSAVE---YAQSQLSLVSVCKEAQKGAEPKMEWKVKVRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWS 686
BLAST of PDZ ring finger protein 4 vs. TrEMBL
Match: G5BGJ9 (PDZ domain-containing RING finger protein 4 OS=Heterocephalus glaber OX=10181 GN=GW7_19029 PE=4 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.323e-16 Identity = 103/337 (30.56%), Postives = 153/337 (45.40%), Query Frame = 2
Query: 593 KVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSISNTSVKPTIPFMMDLSVNIPTQSTNDYILPYPSSVFGQP----LHGYINSSQKTNQINNHTDSNHSLSS-----YSNNCALKSFLNDAIKNRD-DYSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF--QKCGLEVKLLLGRPNI-ISKFNGNTNRNGNYSSELPPLE-------------EVEYASVYDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSE 1522
KVNGKDLS A+H++ +EAF +A EPI V+V RR +S S T+P + ++ + T T ++I+ P + ++ S DS HSL Y +N L S DA + D +Y EV L + S+E GLT+ Y D ++ +Y+S ++PNS+A K+ IR GD+ILQIN DVH++ + V+L ++C + LL+ RP I + + RN + EVE +E EG T+ + +KDSG+GR TDE+ EESSE
Sbjct: 20 KVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRTPLSRPSYG-TVPEVQLMNASTQTDITFEHIMALAKLRPPTPPVPDICPFLLS-----------DSCHSLHPMEREFYEDNEYLSSLPADADRTEDFEYE-------------------------------EVELCRVNSQEKLGLTVCYRT---DDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVHNREEAVALLSSEECK-RIVLLVARPEIQLDEGWLEDERNEFLEELNLEMLEEQHNEAMQHTANEVEQPKKQEEEEGTTDTATSSSNNHEKDSGVGR-TDESLPNEESSE 308 HSP 2 Score: 72.0182 bits (175), Expect = 5.546e-9 Identity = 75/236 (31.78%), Postives = 112/236 (47.46%), Query Frame = 2
Query: 1817 NTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFN----MSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTIL--HQFSSTGFPEI-PQHSSD------DTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQL-----IKSDKLDS--KMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
++SAY+T A+S RS+PLT++ P S ++L N K L S +K ++S + + G ST + E + SS L + S P + P HSS T +Y Y L I+Q + VE Y +QL K + S KMEW VK R DGTRYIT+RP+R+R++K+R K+ EER+ T ++D ++L + R W+
Sbjct: 473 SSSAYNT-AESCRSTPLTVDRSPDSSLPRTINL------TNKKNLRSTMAPRQPSSGQSSKESMSTRAKATEQGCSTES-QEKLLESSQRLDPEKTGSEPIPYLSPYHSSSYRCANIPTHARHYQSYMQL-----------------IQQKSAVE---YAQSQLSLVSVCKDPQKGSEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSELKMGRYWS 680
BLAST of PDZ ring finger protein 4 vs. TrEMBL
Match: A0A402FLH3 (PDZ domain-containing protein OS=Paroedura picta OX=143630 GN=parPi_0020138 PE=4 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.775e-16 Identity = 91/333 (27.33%), Postives = 145/333 (43.54%), Query Frame = 2
Query: 572 RMDFIILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARR------------YSISNTSVKPTIPF--MMDLSVNIPTQSTNDYILPYPSSVFGQPLHGYINSSQKTNQINNHTDSNHSLSSYSNNCALKSFLNDAIKNRDDYSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF--QKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSE 1522
++ + + +VNG+DLS A+H++ +E F +A EPI V+V RR +++ S + I F +M L+ PT I P+ S LH +H Y N L S DA + +D+ C ++ L + +S+E GLT+ Y D ++ +YIS I+PNS+A ++ IR GD+ILQIN DV ++ + V+L +C ++ LL+ RP E+ P + E D ++NN +KDSG+G TDE+ + +ESSE
Sbjct: 16 KLLYEVSQVNGRDLSKATHEEAVEVFRNAKEPIVVQVLRRAPLLKAHGSSQDVQLTDASTQTDITFEHIMALAKLRPTTPPVPEICPFLLSDSCHSLHPV----------------DHEF--YEGNEYLSSLPTDADRT-EDFECEEIE-----------------------------LCRVKSQEKLGLTVCYRT---DDEEDTGIYISEIDPNSIAARDGRIREGDRILQINGQDVQNREEAVALLSSDECK-KIVLLVARP------------------EMQPKKHEEEEGTTDTATSSSNNN------EKDSGVG-PTDESQRNDESSE 271 HSP 2 Score: 80.1073 bits (196), Expect = 1.488e-11 Identity = 76/256 (29.69%), Postives = 117/256 (45.70%), Query Frame = 2
Query: 1754 GTKLDPPQTKSPIPLPPASGSNTSAYSTGADSTRSSPLTMELPPTISSASFLS------LKIDVRNNNYKFLDDNFNMSSTRTKYNLSNS--DQKSTSGSSTNNLTESRMASSTILH----QFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQL------IKSDKL-DSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
G KLD I P S +TS+ A+S RS+PL ++ P S +S L+ + N + + +S +TK NS ++K T S + + R + I + SS F IP H+ +Y Y L I+Q + VE Y +QL +S K + KMEW VK R DGTRYIT+RP+R+R++K+R K+ EER+ T ++D +++ + R W+
Sbjct: 420 GGKLD-----DIIEHPEKSDKDTSSAYNTAESCRSTPLNVDRSPDSSLQRMISITNRKNLRSTIVANQLSSRHSSRDTTSNKTKATEQNSSLEEKETVSESGKSTEQERQSPEHIPYLSPYHSSSYRFGNIPAHAK------HYQSYMQL-----------------IQQKSAVE---YAQSQLSLVNMCKESQKCTEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWS 644
BLAST of PDZ ring finger protein 4 vs. Ensembl Cavefish
Match: pdzrn3a (E3 ubiquitin-protein ligase PDZRN3 [Source:NCBI gene;Acc:103022706]) HSP 1 Score: 78.5666 bits (192), Expect = 2.278e-14 Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = 2
Query: 1064 LRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLE-VKLLLGRPNIISKFNGNTNRNGNYSS-ELPPLEEVEYASVY-----------DEVEGNTNNENKFTQ-MDKDSGIGRGTDEANKTEESSE 1522
L+K+ +++ GLTL Y + E+ +Y+S I+P S+A ++ +R GDQI+QIN +D+ + + V++ K V+LLL RP I + + E+ LE+ SV+ +E EG T+ + +KDSG+GR TDE+ + +ESSE
Sbjct: 382 LQKRSTQDKLGLTLCYKT---DEEEETGIYVSEIDPGSIAAQDGRVREGDQIIQINGVDIQNHEEAVAVLSKGNCRNVRLLLARPEIQDDGWLEEDEHSFLEDLEMGTLEKQHCQSVHFTASMLHQREREEDEGTTDTATVLSNPHEKDSGVGR-TDESTRNDESSE 544 HSP 2 Score: 62.3882 bits (150), Expect = 2.361e-9 Identity = 25/57 (43.86%), Postives = 40/57 (70.18%), Query Frame = 2
Query: 2294 KMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
KMEW VK R DGTRYIT+RP + +++++R ++ EER T ++D ++L + R W+
Sbjct: 853 KMEWKVKIRSDGTRYITKRPAKEQLLRERALRIREERRGMTTDDDTVSELKMGRYWS 909
BLAST of PDZ ring finger protein 4 vs. Ensembl Cavefish
Match: pdzrn3b (PDZ domain containing ring finger 3 [Source:NCBI gene;Acc:103033977]) HSP 1 Score: 73.559 bits (179), Expect = 7.836e-13 Identity = 57/170 (33.53%), Postives = 90/170 (52.94%), Query Frame = 2
Query: 1091 FGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNII--SKFNGNTNRNGNYSSELPPLEEVEYASV-----------YDEVEGNTNNENKFTQM-DKDSGIGRGTDEANKTEESSE----CDSNQTS 1543
GLT+ Y D E+ +Y+S I+PNS+A ++ IR GD+I+QIN I+V ++ + V+L + V LL+ RP I + + + + LEE + ++ +DE G T+ +Q +KDSG+GR TDE+ + +ESSE CD +QTS
Sbjct: 430 LGLTVCYRT---DDEDETGIYVSEIDPNSIAARDGRIREGDRIIQINGIEVQNREEAVALLTSEENQNVCLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASMLEQKKHDEDGGTTDTATLLSQRHEKDSGLGR-TDESTRNDESSEQENLCD-DQTS 594 HSP 2 Score: 66.6254 bits (161), Expect = 1.110e-10 Identity = 62/222 (27.93%), Postives = 101/222 (45.50%), Query Frame = 2
Query: 1817 NTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMA-----SSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEER-NYTTEEEDIHADLVLNRCWT 2464
++SAY+TG +S RS+PLT+EL P S DV SS+R + + + Q+ +S + + E+ H S IP H+ +Y Y L ++ + SQ+ + D + L+ KMEW VK R DGTRYIT+RP+R+R++++R ++ EER T ++D ++L + R W+
Sbjct: 755 SSSAYNTG-ESCRSTPLTLELSPDNSLRRVGEGPADVGGAAL--------ASSSRIQKPMLSPVQEVSSRNRPSPTEETEPGPQPETKERNAHPRSVYKHAHIPAHA------RHYQSYMQLI----QQKSAVEYGQSQMSLASMCRD---------AAQDLEPKMEWKVKIRSDGTRYITKRPVRDRLLRERALRIREERSGGMTTDDDAVSELKMGRYWS 948 HSP 3 Score: 53.1434 bits (126), Expect = 1.528e-6 Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 2
Query: 587 ILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARR 691
I++VNGKDLS A+H+Q +EAF +A EPI V+V RR
Sbjct: 304 IMEVNGKDLSKATHEQAVEAFRTAKEPIMVQVLRR 338
BLAST of PDZ ring finger protein 4 vs. Ensembl Cavefish
Match: PDZD4 (PDZ domain containing 4 [Source:HGNC Symbol;Acc:HGNC:21167]) HSP 1 Score: 67.781 bits (164), Expect = 3.890e-11 Identity = 54/171 (31.58%), Postives = 81/171 (47.37%), Query Frame = 2
Query: 1064 LRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPL--EEVEYASVYDEVEGN-------------TNNENKFTQMDKDSGIGRGTDEANKTEESSECD 1528
L K ++ GLT+ Y D + +Y+ + PNS+A K IR GD+ILQIN +DV ++ + V++ ++ + LLL RP I R +E+ L +E + V ++ N NN + DSG+GR TDE+ K EESSE D
Sbjct: 90 LYKSSQQDKLGLTVCYRT---DDEEDQGIYVGEVNPNSIAAKAGRIRKGDRILQINGVDVQNREEAVAILTREDSINFSLLLARPEI--------ERRRGKDAEIKGLLNQEEQQQRVQAGLQENPLHRESPRLSLVTLNNSQEL-----DSGVGR-TDESTKNEESSEHD 243 HSP 2 Score: 65.0846 bits (157), Expect = 2.828e-10 Identity = 32/91 (35.16%), Postives = 60/91 (65.93%), Query Frame = 2
Query: 2294 KMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWTXXXXXXXXXXXXXXXXXXXMITNCQPTDLPLNGQ 2566
+MEW VK R DGTRY+ +RP+R+R++K R K+ EER+ T ++D +++ + R W+K ++++ K ++++ +R+ + C+ L GQ
Sbjct: 596 RMEWKVKIRSDGTRYVAKRPVRDRLLKARAMKIREERSGMTTDDDAVSEMKMGRYWSKEERKQQLLKAREQRRRREFMIQCRLDYLRDQGQ 686
BLAST of PDZ ring finger protein 4 vs. Ensembl Cavefish
Match: PDZRN4 (PDZ domain containing ring finger 4 [Source:NCBI gene;Acc:103023148]) HSP 1 Score: 66.6254 bits (161), Expect = 9.741e-11 Identity = 69/235 (29.36%), Postives = 112/235 (47.66%), Query Frame = 2
Query: 1817 NTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGS-STNNLTESRMA------SSTILHQFSSTGFPEIPQ-HSSDDTECH--YYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLI--------KSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNY-TTEEEDIHADLVLNRCWT 2464
++SAY+T A+S+RS+PL M+ P S +SL N K L + + T S++ +++ SGS +N +ES SS + + P + Q H D H +Y Y L ++Q + VE Y +QL S + K+EW VK R DGTRYIT+RP+R+R++++R K+ EER+ T ++D +++ + R W+
Sbjct: 469 SSSAYNT-AESSRSTPLAMDRSPEHSLQRMVSL------TNQKNLKSSLSSLITGRGSPPSHAIRRAPSGSPDHSNPSESEQTPPAEEESSPRKGKVLGSRIPYLSQRHQQADVPAHARHYQSYMQL-----------------VQQRSAVE---YGQSQLSLLAAGGPQVSRPSEPKLEWKVKVRSDGTRYITKRPVRDRLLRERALKIKEERSSGMTTDDDAMSEMKMGRYWS 676 HSP 2 Score: 60.4622 bits (145), Expect = 8.417e-9 Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 2
Query: 1079 SREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF--QKCGLEVKLLLGRPNI 1321
S+E GLTL Y D + +Y+S I PNS+A ++ IR GD+ILQIN DV + + V++ ++C + LL+ RP I
Sbjct: 151 SQEKLGLTLCYRT---DDEDDIAIYVSEIGPNSIAARDGRIREGDRILQINGQDVQDRQEAVAVLSSEEC-RNIVLLVARPEI 229
BLAST of PDZ ring finger protein 4 vs. Ensembl Cavefish
Match: pdzrn4 (PDZ domain-containing RING finger protein 4 [Source:NCBI gene;Acc:103047366]) HSP 1 Score: 65.855 bits (159), Expect = 1.537e-10 Identity = 48/156 (30.77%), Postives = 75/156 (48.08%), Query Frame = 2
Query: 1079 SREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLE-VKLLLGRPNIISKFNGNTNRNGNYSSELPP--LEEVEYASVYDEVEGNTNNENKF----------TQMDKDSGIGRGTDEANKT 1507
S+E GLTL Y D ++ +Y+S + PNS+A ++ IR GD+ILQIN DV + + V+L + LL+ RP + ++ EL LE+ +Y N + ++K T DKDSG+G G +E ++T
Sbjct: 149 SQEKLGLTLCYRT---DDEEDTAIYVSQVGPNSIAARDGRIREGDRILQINGQDVQDREEAVALLSNEDTRNIVLLVTRPEAQMDDGWLDEEHHDFLEELKMDILEQRRKEDIYQ--SANCDKQSKLIEEDKATCSSTLQDKDSGMGYGGEEDSET 299 HSP 2 Score: 57.7658 bits (138), Expect = 5.315e-8 Identity = 23/59 (38.98%), Postives = 40/59 (67.80%), Query Frame = 2
Query: 2291 SKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEER-NYTTEEEDIHADLVLNRCWT 2464
++EW VK R DGT+Y+ RRP R+R++++R ++ EER T ++D ++L + R W+
Sbjct: 652 GRLEWKVKVRADGTKYVARRPARDRILRERALRIREERSGGMTTDDDAASELKMGRYWS 710
BLAST of PDZ ring finger protein 4 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000743.1 (pep scaffold:Pmarinus_7.0:GL478474:22919:40568:-1 gene:ENSPMAG00000000678.1 transcript:ENSPMAT00000000743.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 64.6994 bits (156), Expect = 5.871e-11 Identity = 25/57 (43.86%), Postives = 42/57 (73.68%), Query Frame = 2
Query: 2294 KMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
+ EW VK R DG+RYIT+RP+R+R++K+R K+ EER+ T ++D +++ + R W+
Sbjct: 472 RGEWKVKVRSDGSRYITKRPVRDRLLKERAMKIKEERSGMTTDDDALSEMKMGRYWS 528 HSP 2 Score: 55.4546 bits (132), Expect = 5.382e-8 Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 2
Query: 1163 IEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSE--LPPLEEVE------YASVYDEV----EGNTNNENKFTQMDKDSGIGRGTDEANKTE----ESSE 1522
I+PNS+A K+ IR GD+ILQIN +D+ + + V+L + V LLL RP I + Y + + LEE + ASV + E + ++ +KDSG+GR TDE+ + + ESSE
Sbjct: 2 IDPNSIAAKDGRIREGDRILQINGVDIQGREEAVALLTNEKNRRVSLLLARPEIQLDEGWMEDERSEYLEDISMDVLEEQDNQDFEVNASVPQQQMRTPEDDGTTDSAHNGQEKDSGVGR-TDESTRNDNDENESSE 137
BLAST of PDZ ring finger protein 4 vs. Ensembl Medaka
Match: pdzrn3b (PDZ domain containing ring finger 3 [Source:NCBI gene;Acc:101166295]) HSP 1 Score: 72.4034 bits (176), Expect = 1.721e-12 Identity = 65/235 (27.66%), Postives = 107/235 (45.53%), Query Frame = 2
Query: 1796 LPPASGSNTS-AYSTGADSTRSSPLTMELPP--TISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQL---------IKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
LP S ++S AY+TG +S RS+PLT+EL P ++ + + + + L + S K + G+ T+ R S S IP H+ +Y Y L I+Q + VE Y +Q+ + + L+ KMEW VK R DGTRYIT+RP+R++++K+R +++EER+ T ++D ++L + R W+
Sbjct: 745 LPEKSDKDSSSAYNTG-ESCRSTPLTLELSPDNSLRRCAENQATAGLSGSTGRMLKPALSPVQEACGPIRSRGSTKDSDGALPVE-TKDRRESGKSSQSRSPYKHAHIPAHAK------HYQSYMQL-----------------IQQKSAVE---YAQSQMSLVSICRDPLSATDLEPKMEWKVKIRSDGTRYITKRPVRDKLLKERAIRIHEERSGLTTDDDAISELKMGRYWS 951 HSP 2 Score: 69.707 bits (169), Expect = 1.139e-11 Identity = 50/159 (31.45%), Postives = 83/159 (52.20%), Query Frame = 2
Query: 1091 FGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSEL--PPLEEVEYASV-----------YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSE 1522
GLTL Y D E+ +YIS ++PNS+A K+ IR GD+I+QIN I++ ++ V+L + + LL+ RP I + + ++ +L LE+ + ++ +E G T+ + +KDSG+GR TDE+ + +ESSE
Sbjct: 431 LGLTLCYRT---DDEDEAGIYISEVDPNSIAAKDGRIREGDKIIQINGIEIQNREDAVALLTSESNQNISLLVARPEIQLDESWLEDDRNDFLDDLHMDMLEQQHHQAMQFTASMLQQKKLEEDGGTTDTATLLSNHHEKDSGVGR-TDESTRNDESSE 585
BLAST of PDZ ring finger protein 4 vs. Ensembl Medaka
Match: pdzrn3b (PDZ domain containing ring finger 3 [Source:NCBI gene;Acc:101166295]) HSP 1 Score: 72.4034 bits (176), Expect = 1.721e-12 Identity = 65/235 (27.66%), Postives = 107/235 (45.53%), Query Frame = 2
Query: 1796 LPPASGSNTS-AYSTGADSTRSSPLTMELPP--TISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQL---------IKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
LP S ++S AY+TG +S RS+PLT+EL P ++ + + + + L + S K + G+ T+ R S S IP H+ +Y Y L I+Q + VE Y +Q+ + + L+ KMEW VK R DGTRYIT+RP+R++++K+R +++EER+ T ++D ++L + R W+
Sbjct: 745 LPEKSDKDSSSAYNTG-ESCRSTPLTLELSPDNSLRRCAENQATAGLSGSTGRMLKPALSPVQEACGPIRSRGSTKDSDGALPVE-TKDRRESGKSSQSRSPYKHAHIPAHAK------HYQSYMQL-----------------IQQKSAVE---YAQSQMSLVSICRDPLSATDLEPKMEWKVKIRSDGTRYITKRPVRDKLLKERAIRIHEERSGLTTDDDAISELKMGRYWS 951 HSP 2 Score: 69.707 bits (169), Expect = 1.139e-11 Identity = 50/159 (31.45%), Postives = 83/159 (52.20%), Query Frame = 2
Query: 1091 FGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSEL--PPLEEVEYASV-----------YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSE 1522
GLTL Y D E+ +YIS ++PNS+A K+ IR GD+I+QIN I++ ++ V+L + + LL+ RP I + + ++ +L LE+ + ++ +E G T+ + +KDSG+GR TDE+ + +ESSE
Sbjct: 431 LGLTLCYRT---DDEDEAGIYISEVDPNSIAAKDGRIREGDKIIQINGIEIQNREDAVALLTSESNQNISLLVARPEIQLDESWLEDDRNDFLDDLHMDMLEQQHHQAMQFTASMLQQKKLEEDGGTTDTATLLSNHHEKDSGVGR-TDESTRNDESSE 585
BLAST of PDZ ring finger protein 4 vs. Ensembl Medaka
Match: pdzrn3b (PDZ domain containing ring finger 3 [Source:NCBI gene;Acc:101166295]) HSP 1 Score: 72.4034 bits (176), Expect = 1.776e-12 Identity = 65/235 (27.66%), Postives = 107/235 (45.53%), Query Frame = 2
Query: 1796 LPPASGSNTS-AYSTGADSTRSSPLTMELPP--TISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQL---------IKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
LP S ++S AY+TG +S RS+PLT+EL P ++ + + + + L + S K + G+ T+ R S S IP H+ +Y Y L I+Q + VE Y +Q+ + + L+ KMEW VK R DGTRYIT+RP+R++++K+R +++EER+ T ++D ++L + R W+
Sbjct: 716 LPEKSDKDSSSAYNTG-ESCRSTPLTLELSPDNSLRRCAENQATAGLSGSTGRMLKPALSPVQEACGPIRSRGSTKDSDGALPVE-TKDRRESGKSSQSRSPYKHAHIPAHAK------HYQSYMQL-----------------IQQKSAVE---YAQSQMSLVSICRDPLSATDLEPKMEWKVKIRSDGTRYITKRPVRDKLLKERAIRIHEERSGLTTDDDAISELKMGRYWS 922 HSP 2 Score: 70.0922 bits (170), Expect = 9.423e-12 Identity = 50/159 (31.45%), Postives = 83/159 (52.20%), Query Frame = 2
Query: 1091 FGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSEL--PPLEEVEYASV-----------YDEVEGNTNNENKFT-QMDKDSGIGRGTDEANKTEESSE 1522
GLTL Y D E+ +YIS ++PNS+A K+ IR GD+I+QIN I++ ++ V+L + + LL+ RP I + + ++ +L LE+ + ++ +E G T+ + +KDSG+GR TDE+ + +ESSE
Sbjct: 402 LGLTLCYRT---DDEDEAGIYISEVDPNSIAAKDGRIREGDKIIQINGIEIQNREDAVALLTSESNQNISLLVARPEIQLDESWLEDDRNDFLDDLHMDMLEQQHHQAMQFTASMLQQKKLEEDGGTTDTATLLSNHHEKDSGVGR-TDESTRNDESSE 556
BLAST of PDZ ring finger protein 4 vs. Ensembl Medaka
Match: si:ch73-162j3.4 (PDZ domain containing 4 [Source:NCBI gene;Acc:101170926]) HSP 1 Score: 65.0846 bits (157), Expect = 2.889e-10 Identity = 58/228 (25.44%), Postives = 103/228 (45.18%), Query Frame = 2
Query: 1817 NTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIE-----QNNCVEDHEYINAQLIKSDKLDS-------KMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
+TSAY+TG +S RS+PL E P+ S+ R+ L ++ S R + S S S + ++ R + + ++ G PE+ S + P + KP R +S ++ ++C+ + + S L +MEW VK R DG+RY+ +RP+R+R++K R K+ EER+ T ++D +++ + R W+
Sbjct: 499 STSAYNTGGESCRSTPLVNEQHPSPSTQ---------RDGIPANLSTPYSPHSHR-RGEARTSSPGSKVRSLSRDVGSRRGSDGGVRRNPTAGGMPEMAGGRSAEN--------SPYLSRREAEAKPPQRYHSCMQLGSPSTSDCLVGLREGTCKDVASLSLPPSLLPASPRMEWKVKIRSDGSRYVAKRPVRDRLLKARAMKIREERSGMTTDDDAVSEMKMGRYWS 708 HSP 2 Score: 63.5438 bits (153), Expect = 8.616e-10 Identity = 48/158 (30.38%), Postives = 79/158 (50.00%), Query Frame = 2
Query: 1070 KKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLF-QKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQM----DKDSGIGRGTDEANKTEESSECD 1528
K + ++ GLT+ Y D + +Y+ + PNS+A + IR GD+IL+IN +D+ ++ + V++ ++ V LLL RP I E+ L E + + NT+ + T + + DSG+GR TDE+ + EESSE D
Sbjct: 157 KSRQQDKLGLTVCYRT---DDEEDLGIYVGEVNPNSIAAMDGRIRKGDRILKINGVDIQNREEAVAILTREDSTNVSLLLARPEI----------------EVRKLCEA-FRECAGRLRLNTDLKRHPTVLSNSQELDSGVGR-TDESTRYEESSEHD 293
BLAST of PDZ ring finger protein 4 vs. Ensembl Medaka
Match: PDZRN4 (PDZ domain-containing RING finger protein 4 [Source:NCBI gene;Acc:101159985]) HSP 1 Score: 64.6994 bits (156), Expect = 3.394e-10 Identity = 63/224 (28.12%), Postives = 110/224 (49.11%), Query Frame = 2
Query: 1817 NTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECH------YYDVYDPLTKSFNEKPKPMSRSNSQIEQ-NNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEER-NYTTEEEDIHADLVLNRCWT 2464
++SAY+T A+S+RS+PL M+ P S +SL + N L ++++R S ++ S T+ + ++ S + Q +S P HSS + + +Y Y L + + + + SQ+ + C E IN + KMEW VK R DGTRYIT+RP+R++++++R K+ EER T ++D +++ + R W+
Sbjct: 454 SSSAYNT-AESSRSTPLAMDRSPEHSLQRMVSLT--NQRNLCSGLAGPSVITASRAPTVGKGSSPDHSNPSETDQMPQAEDESKKKVTQCTSQIPYFSPSHSSQQRQVNIPAHASHYQSYMQLIQQHS----AVEYAQSQLSLLSICKEPQRPIN---------EPKMEWKVKIRSDGTRYITKRPVRDKILRERALKIKEERSGGMTTDDDAMSEMKMGRYWS 661 HSP 2 Score: 55.8398 bits (133), Expect = 1.838e-7 Identity = 31/82 (37.80%), Postives = 47/82 (57.32%), Query Frame = 2
Query: 1079 SREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQ-VVSLFQKCGLEVKLLLGRPNI 1321
S+E GLTL Y D + +Y+S + PNS+A + IR GD+ILQIN DV + + + +LF + LL+ RP++
Sbjct: 151 SQEKLGLTLCYRTDEEEDMA---IYVSEVCPNSIAANDGRIREGDRILQINGQDVKDREEAMAALFNDESRNIVLLVARPDM 229
BLAST of PDZ ring finger protein 4 vs. Planmine SMEST
Match: SMESG000021620.1 (SMESG000021620.1) HSP 1 Score: 1287.32 bits (3330), Expect = 0.000e+0 Identity = 704/705 (99.86%), Postives = 705/705 (100.00%), Query Frame = 2
Query: 575 MDFIILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSISNTSVKPTIPFMMDLSVNIPTQSTNDYILPYPSSVFGQPLHGYINSSQKTNQINNHTDSNHSLSSYSNNCALKSFLNDAIKNRDDYSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECDSNQTSLKKXXXXXXXXXXXXXXXXXXIAQLMQHLAIEYQQLQKLLHGSSDSSIPRVQALPPPTLFQSTSRIVPRMGTKLDPPQTKSPIPLPPASGSNTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWTXXXXXXXXXXXXXXXXXXXMITNCQPTDLPLNGQCSLKNDVYVANNRSFHKDFQNKNLINRNCDIAAFLVGSTMF 2689
MDFIILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSISNTSVKPTIPFMMDLSVNIPTQSTNDYILPYP+SVFGQPLHGYINSSQKTNQINNHTDSNHSLSSYSNNCALKSFLNDAIKNRDDYSCGDLLKIEGILEEEEDAELDDDEEQVEIIKEEVVLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECDSNQTSLKKSAQYQSSDSSGSRPDPQQIAQLMQHLAIEYQQLQKLLHGSSDSSIPRVQALPPPTLFQSTSRIVPRMGTKLDPPQTKSPIPLPPASGSNTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWTKSDKRKYYDKVKDKKHKRKMITNCQPTDLPLNGQCSLKNDVYVANNRSFHKDFQNKNLINRNCDIAAFLVGSTMF
Sbjct: 1 MDFIILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSISNTSVKPTIPFMMDLSVNIPTQSTNDYILPYPTSVFGQPLHGYINSSQKTNQINNHTDSNHSLSSYSNNCALKSFLNDAIKNRDDYSCGDLLKIEGILEEEEDAELDDDEEQVEIIKEEVVLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECDSNQTSLKKSAQYQSSDSSGSRPDPQQIAQLMQHLAIEYQQLQKLLHGSSDSSIPRVQALPPPTLFQSTSRIVPRMGTKLDPPQTKSPIPLPPASGSNTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWTKSDKRKYYDKVKDKKHKRKMITNCQPTDLPLNGQCSLKNDVYVANNRSFHKDFQNKNLINRNCDIAAFLVGSTMF 705
BLAST of PDZ ring finger protein 4 vs. Planmine SMEST
Match: SMESG000021620.1 (SMESG000021620.1) HSP 1 Score: 1283.47 bits (3320), Expect = 0.000e+0 Identity = 704/706 (99.72%), Postives = 705/706 (99.86%), Query Frame = 2
Query: 575 MDFIILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSISNTSVKPTIPFMMDLSVNIPTQSTNDYILPYPSSVFGQPLHGYINSSQKTNQINNHTDSNHSLSSYSNNCALKSFLNDAIKNRDDYSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECDSNQTSLKKXXXXXXXXXXXXXXXXXXIAQLMQHLAIEYQQLQKLLHGSSDSSIPRVQALPPPTLFQSTSRIVPRMGTKLDPPQTKSPIPLPPA-SGSNTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWTXXXXXXXXXXXXXXXXXXXMITNCQPTDLPLNGQCSLKNDVYVANNRSFHKDFQNKNLINRNCDIAAFLVGSTMF 2689
MDFIILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSISNTSVKPTIPFMMDLSVNIPTQSTNDYILPYP+SVFGQPLHGYINSSQKTNQINNHTDSNHSLSSYSNNCALKSFLNDAIKNRDDYSCGDLLKIEGILEEEEDAELDDDEEQVEIIKEEVVLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECDSNQTSLKKSAQYQSSDSSGSRPDPQQIAQLMQHLAIEYQQLQKLLHGSSDSSIPRVQALPPPTLFQSTSRIVPRMGTKLDPPQTKSPIPLPPA SGSNTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWTKSDKRKYYDKVKDKKHKRKMITNCQPTDLPLNGQCSLKNDVYVANNRSFHKDFQNKNLINRNCDIAAFLVGSTMF
Sbjct: 1 MDFIILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSISNTSVKPTIPFMMDLSVNIPTQSTNDYILPYPTSVFGQPLHGYINSSQKTNQINNHTDSNHSLSSYSNNCALKSFLNDAIKNRDDYSCGDLLKIEGILEEEEDAELDDDEEQVEIIKEEVVLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECDSNQTSLKKSAQYQSSDSSGSRPDPQQIAQLMQHLAIEYQQLQKLLHGSSDSSIPRVQALPPPTLFQSTSRIVPRMGTKLDPPQTKSPIPLPPAASGSNTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWTKSDKRKYYDKVKDKKHKRKMITNCQPTDLPLNGQCSLKNDVYVANNRSFHKDFQNKNLINRNCDIAAFLVGSTMF 706
BLAST of PDZ ring finger protein 4 vs. Planmine SMEST
Match: SMESG000021620.1 (SMESG000021620.1) HSP 1 Score: 1173.69 bits (3035), Expect = 0.000e+0 Identity = 651/653 (99.69%), Postives = 652/653 (99.85%), Query Frame = 2
Query: 734 MMDLSVNIPTQSTNDYILPYPSSVFGQPLHGYINSSQKTNQINNHTDSNHSLSSYSNNCALKSFLNDAIKNRDDYSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECDSNQTSLKKXXXXXXXXXXXXXXXXXXIAQLMQHLAIEYQQLQKLLHGSSDSSIPRVQALPPPTLFQSTSRIVPRMGTKLDPPQTKSPIPLPPA-SGSNTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWTXXXXXXXXXXXXXXXXXXXMITNCQPTDLPLNGQCSLKNDVYVANNRSFHKDFQNKNLINRNCDIAAFLVGSTMF 2689
MMDLSVNIPTQSTNDYILPYP+SVFGQPLHGYINSSQKTNQINNHTDSNHSLSSYSNNCALKSFLNDAIKNRDDYSCGDLLKIEGILEEEEDAELDDDEEQVEIIKEEVVLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECDSNQTSLKKSAQYQSSDSSGSRPDPQQIAQLMQHLAIEYQQLQKLLHGSSDSSIPRVQALPPPTLFQSTSRIVPRMGTKLDPPQTKSPIPLPPA SGSNTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWTKSDKRKYYDKVKDKKHKRKMITNCQPTDLPLNGQCSLKNDVYVANNRSFHKDFQNKNLINRNCDIAAFLVGSTMF
Sbjct: 1 MMDLSVNIPTQSTNDYILPYPTSVFGQPLHGYINSSQKTNQINNHTDSNHSLSSYSNNCALKSFLNDAIKNRDDYSCGDLLKIEGILEEEEDAELDDDEEQVEIIKEEVVLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECDSNQTSLKKSAQYQSSDSSGSRPDPQQIAQLMQHLAIEYQQLQKLLHGSSDSSIPRVQALPPPTLFQSTSRIVPRMGTKLDPPQTKSPIPLPPAASGSNTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWTKSDKRKYYDKVKDKKHKRKMITNCQPTDLPLNGQCSLKNDVYVANNRSFHKDFQNKNLINRNCDIAAFLVGSTMF 653
BLAST of PDZ ring finger protein 4 vs. Planmine SMEST
Match: SMESG000021620.1 (SMESG000021620.1) HSP 1 Score: 1171.38 bits (3029), Expect = 0.000e+0 Identity = 650/652 (99.69%), Postives = 651/652 (99.85%), Query Frame = 2
Query: 737 MDLSVNIPTQSTNDYILPYPSSVFGQPLHGYINSSQKTNQINNHTDSNHSLSSYSNNCALKSFLNDAIKNRDDYSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECDSNQTSLKKXXXXXXXXXXXXXXXXXXIAQLMQHLAIEYQQLQKLLHGSSDSSIPRVQALPPPTLFQSTSRIVPRMGTKLDPPQTKSPIPLPPA-SGSNTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWTXXXXXXXXXXXXXXXXXXXMITNCQPTDLPLNGQCSLKNDVYVANNRSFHKDFQNKNLINRNCDIAAFLVGSTMF 2689
MDLSVNIPTQSTNDYILPYP+SVFGQPLHGYINSSQKTNQINNHTDSNHSLSSYSNNCALKSFLNDAIKNRDDYSCGDLLKIEGILEEEEDAELDDDEEQVEIIKEEVVLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECDSNQTSLKKSAQYQSSDSSGSRPDPQQIAQLMQHLAIEYQQLQKLLHGSSDSSIPRVQALPPPTLFQSTSRIVPRMGTKLDPPQTKSPIPLPPA SGSNTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWTKSDKRKYYDKVKDKKHKRKMITNCQPTDLPLNGQCSLKNDVYVANNRSFHKDFQNKNLINRNCDIAAFLVGSTMF
Sbjct: 1 MDLSVNIPTQSTNDYILPYPTSVFGQPLHGYINSSQKTNQINNHTDSNHSLSSYSNNCALKSFLNDAIKNRDDYSCGDLLKIEGILEEEEDAELDDDEEQVEIIKEEVVLRKKQSREIFGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLEVKLLLGRPNIISKFNGNTNRNGNYSSELPPLEEVEYASVYDEVEGNTNNENKFTQMDKDSGIGRGTDEANKTEESSECDSNQTSLKKSAQYQSSDSSGSRPDPQQIAQLMQHLAIEYQQLQKLLHGSSDSSIPRVQALPPPTLFQSTSRIVPRMGTKLDPPQTKSPIPLPPAASGSNTSAYSTGADSTRSSPLTMELPPTISSASFLSLKIDVRNNNYKFLDDNFNMSSTRTKYNLSNSDQKSTSGSSTNNLTESRMASSTILHQFSSTGFPEIPQHSSDDTECHYYDVYDPLTKSFNEKPKPMSRSNSQIEQNNCVEDHEYINAQLIKSDKLDSKMEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWTKSDKRKYYDKVKDKKHKRKMITNCQPTDLPLNGQCSLKNDVYVANNRSFHKDFQNKNLINRNCDIAAFLVGSTMF 652
BLAST of PDZ ring finger protein 4 vs. Planmine SMEST
Match: SMESG000070317.1 (SMESG000070317.1) HSP 1 Score: 72.7886 bits (177), Expect = 4.427e-13 Identity = 28/56 (50.00%), Postives = 43/56 (76.79%), Query Frame = 2
Query: 2297 MEWVVKKRPDGTRYITRRPIRNRMMKDREKKLNEERNYTTEEEDIHADLVLNRCWT 2464
MEWV+KKRPDG++Y+TRRP RN+ +K+R K++ ER T ++D H+++ L R W+
Sbjct: 340 MEWVLKKRPDGSKYVTRRPKRNKFLKERAKQVVAERTGGTTDDDAHSEIKLGRYWS 395 HSP 2 Score: 65.855 bits (159), Expect = 8.342e-11 Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 2
Query: 1091 FGLTLSYSALSASDNSESEVYISAIEPNSVAKKEPNIRLGDQILQINNIDVHSKAQVVSLFQKCGLEVKL 1300
+GLTLSY L E+ V+IS IE NS+A N+R+G++IL IN+ V S++QV+ LF++ LEV L
Sbjct: 108 YGLTLSYELLQLEKEVETSVFISEIEKNSLASFNSNLRVGNEILAINDEPVKSRSQVIDLFRQSDLEVVL 177 HSP 3 Score: 53.5286 bits (127), Expect = 6.249e-7 Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 2
Query: 575 MDFIILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARR 691
MDFIILK+NGKD++T SH + ++ FN A + VE+AR+
Sbjct: 1 MDFIILKINGKDVTTCSHDEAVKYFNEAPDRFLVEIARK 39 The following BLAST results are available for this feature:
BLAST of PDZ ring finger protein 4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of PDZ ring finger protein 4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of PDZ ring finger protein 4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of PDZ ring finger protein 4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of PDZ ring finger protein 4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of PDZ ring finger protein 4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of PDZ ring finger protein 4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of PDZ ring finger protein 4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of PDZ ring finger protein 4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of PDZ ring finger protein 4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of PDZ ring finger protein 4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of PDZ ring finger protein 4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of PDZ ring finger protein 4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of PDZ ring finger protein 4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Cross References
External references for this transcript
Sequences
The following sequences are available for this feature:
transcript sequence >SMED30034470 ID=SMED30034470|Name=PDZ ring finger protein 4|organism=Schmidtea mediterranea sexual|type=transcript|length=2802bpback to top protein sequence of SMED30034470-orf-1 >SMED30034470-orf-1 ID=SMED30034470-orf-1|Name=SMED30034470-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=706bp MDFIILKVNGKDLSTASHQQVLEAFNSASEPIFVEVARRYSISNTSVKPTback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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