WD_REPEATS_REGION domain-containing protein

Overview
NameWD_REPEATS_REGION domain-containing protein
Smed IDSMED30034465
Length (bp)748
Neoblast Clusters

Zeng et. al., 2018




 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30034465

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30034465h1SMcG0003267 SmedASXL_012755SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30034465h1SMcG0003267 SmedASXL_004094SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30034465h1SMcG0003267 dd_Smed_v4_29867_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30034465h1SMcG0003267 dd_Smed_v4_29867_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30034465h1SMcG0003267 dd_Smed_v4_74366_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30034465h1SMcG0003267 dd_Smed_v4_74366_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30034465h1SMcG0003267 dd_Smed_v4_29867_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30034465h1SMcG0003267 dd_Smed_v4_21908_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Match: NWD1 (NACHT and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:27619])

HSP 1 Score: 55.8398 bits (133), Expect = 2.536e-8
Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 1
Query:  106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKL---QPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546
            N RKL ELPYHL  S + EEL +  L + +++  +  S  I  +L D+++     P++   D  +  ++R+ L+L    ++L   + + L  +++ RL  +         ++ Q+  +  S  + C    L+PL  F+Q PGGPL     G H+
Sbjct:  725 NLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLCA---PHL---DSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSH---PALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPGGPLRATLSGCHK 869          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Match: NWD1 (NACHT and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:27619])

HSP 1 Score: 55.8398 bits (133), Expect = 2.536e-8
Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 1
Query:  106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKL---QPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546
            N RKL ELPYHL  S + EEL +  L + +++  +  S  I  +L D+++     P++   D  +  ++R+ L+L    ++L   + + L  +++ RL  +         ++ Q+  +  S  + C    L+PL  F+Q PGGPL     G H+
Sbjct:  725 NLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLCA---PHL---DSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSH---PALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPGGPLRATLSGCHK 869          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Match: NWD1 (NACHT and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:27619])

HSP 1 Score: 55.8398 bits (133), Expect = 2.536e-8
Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 1
Query:  106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKL---QPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546
            N RKL ELPYHL  S + EEL +  L + +++  +  S  I  +L D+++     P++   D  +  ++R+ L+L    ++L   + + L  +++ RL  +         ++ Q+  +  S  + C    L+PL  F+Q PGGPL     G H+
Sbjct:  725 NLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLCA---PHL---DSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSH---PALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPGGPLRATLSGCHK 869          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Match: NWD1 (NACHT and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:27619])

HSP 1 Score: 55.8398 bits (133), Expect = 2.554e-8
Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 1
Query:  106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKL---QPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546
            N RKL ELPYHL  S + EEL +  L + +++  +  S  I  +L D+++     P++   D  +  ++R+ L+L    ++L   + + L  +++ RL  +         ++ Q+  +  S  + C    L+PL  F+Q PGGPL     G H+
Sbjct:  725 NLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLCA---PHL---DSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSH---PALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPGGPLRATLSGCHK 869          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Match: NWD1 (NACHT and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:27619])

HSP 1 Score: 55.8398 bits (133), Expect = 2.561e-8
Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 1
Query:  106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKL---QPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546
            N RKL ELPYHL  S + EEL +  L + +++  +  S  I  +L D+++     P++   D  +  ++R+ L+L    ++L   + + L  +++ RL  +         ++ Q+  +  S  + C    L+PL  F+Q PGGPL     G H+
Sbjct:  725 NLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLCA---PHL---DSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSH---PALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPGGPLRATLSGCHK 869          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Celegans
Match: T05C3.2 (pep chromosome:WBcel235:V:5493747:5503010:1 gene:WBGene00020254.1 transcript:T05C3.2.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:T05C3.2)

HSP 1 Score: 119.783 bits (299), Expect = 1.666e-30
Identity = 65/182 (35.71%), Postives = 107/182 (58.79%), Query Frame = 1
Query:  100 RYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLND--DPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGE 639
            RYN RKLNELPYHL +S + +EL  +CLF++ FLHAKVSSF + S++ DYE  + +  D  IS     Q  +  D LRLS++ +   P+ L  +++GRLLP      ++  +L  I+ +K   +    +P +     PGGPL+F  +  HQF    + +   +  L++ S +I+++++ +G+
Sbjct:  856 RYNTRKLNELPYHLLRSGRVDELLTLCLFDYEFLHAKVSSFPLQSLIADYEDAIQNVRDVEISR----QLSLAVDALRLSASILSRNPSMLAFELLGRLLPLVATNKYVSKLL--IKCDKEGPQHNSFVPAHHCFHAPGGPLKFSLEE-HQFAVFGMQLTSDRKLLVSTSTQIIVWDVSTGD 1030          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Fly
Match: CG10185 (gene:FBgn0038397 transcript:FBtr0083235)

HSP 1 Score: 120.168 bits (300), Expect = 1.610e-30
Identity = 65/188 (34.57%), Postives = 107/188 (56.91%), Query Frame = 1
Query:   79 STDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYE-MVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGE 639
            S D +  RYN RK  ELP+H  +S++ ++LFE  LFN+++LHAK+SS  + ++L D+E    N D   +  +L+   ++ D LRL    + + PN L PQ+VGRLLP       I+M+L     ++   + C LIP+   + TPGGPL++  +G HQF      +      ++++S   + F+L + +
Sbjct:  780 SKDGLSKRYNLRKFGELPFHFVRSRRFKDLFEHVLFNYDWLHAKLSSCPLQAVLADFEDASSNTDDKEAKRELM---LVSDALRLGGAILAIYPNMLAPQLVGRLLPEIGGNPNIKMLLRAC--DRSGPKDCALIPVNHCLHTPGGPLKYSLEG-HQFAVFAFCLTSDMRYMVSISTHFITFDLSTSD 961          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Zebrafish
Match: si:ch211-212k18.6 (si:ch211-212k18.6 [Source:ZFIN;Acc:ZDB-GENE-130530-938])

HSP 1 Score: 58.5362 bits (140), Expect = 2.299e-9
Identity = 34/99 (34.34%), Postives = 51/99 (51.52%), Query Frame = 1
Query:   94 CVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRL 390
            C  +N RKL+ LPYH   S +   L   CLFN+ FL  K+   SI  + +D +  +     I ++DL+   +L   L LS + +   P  L  Q++GRL
Sbjct: 1038 CYVFNLRKLHCLPYHYIHSGQIIPLLTECLFNYEFLLHKLWGLSIYHVQEDLKAAV-----IVDKDLLDVAVLAQVLSLSHSVLLNDPCQLASQLLGRL 1131          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Zebrafish
Match: nwd1 (NACHT and WD repeat domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-071116-8])

HSP 1 Score: 48.9062 bits (115), Expect = 3.071e-6
Identity = 46/156 (29.49%), Postives = 73/156 (46.79%), Query Frame = 1
Query:  106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMV--LNDDPYISNEDLVQCQILRDCLRLSSNCI-----KLQPNNLGPQIVGR---LLPYFNDMFWIQMILNQIR--FEKYSLEKCCLIPLYSFIQTPGGPLEFCFDG 537
            N RK++ELPYHL  + K +EL +  L + ++L  K     +  ++QD  +   L D P I        Q+L++   L    +     ++ P+ L  +I  R   L  ++  M  I  + +Q    FE YS     L+P  SF + PGGPL+    G
Sbjct:  783 NLRKIHELPYHLAHAGKWDELRQSVLGSLDWLCCKTLQCGVSCVIQDLTLCTDLTDCPEI--------QLLKETFLLLKPSLDFSDGRVDPSLLVTEIFARLQGLADHYPSM--IGQLCSQCMDWFESYS--DPLLVPKCSFFEAPGGPLKSTLRG 926          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Xenopus
Match: ppp1r3c.1 (protein phosphatase 1, regulatory (inhibitor) subunit 3C, gene 1 [Source:Xenbase;Acc:XB-GENE-969181])

HSP 1 Score: 56.225 bits (134), Expect = 2.021e-8
Identity = 52/191 (27.23%), Postives = 91/191 (47.64%), Query Frame = 1
Query:  106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIV-----GRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQF-------PQQCIHVIPSQNRLITMSN--KIVIFNLVSG 636
            N RK++ELPYHL  +   +EL    L N +++ +K+ S  I S+++D+EM +     IS+ +++   +LRD   LS+ C+   P+N  P IV      R+  +      I  +  Q     +       IP   F Q PGGPL+    G  +        P   + V+ S++ ++ + N   I + + ++G
Sbjct:  719 NRRKMSELPYHLLNAGCIDELQGEILGNMDWISSKIVSCGIQSVIKDFEMSVK---LISSREIM---LLRDT--LSTLCL---PSNTDPVIVFTEMLARMHFFQLSYRLIDELCQQCTGWLHQYPHPTFIPTCGFFQPPGGPLQTTVTGFKKGVTVMELCPDHDLLVVGSEDGIMIVWNIKDIEVIHTLTG 898          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000003639.1 (uncharacterized LOC101730828 [Source:NCBI gene;Acc:101730828])

HSP 1 Score: 49.6766 bits (117), Expect = 2.683e-6
Identity = 30/96 (31.25%), Postives = 50/96 (52.08%), Query Frame = 1
Query:  103 YNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRL 390
            +N RK+  + +HL  S +   L   CLFN+ +L  KV + S++ + +D +  +N  P     DL    +L + L+LS+  +   P  L  Q+ GRL
Sbjct:  393 FNLRKILGISHHLIHSNQFPRLITECLFNYEYLLHKVWATSVVGLQEDIKAAIN--PERPAPDL---NLLSEALQLSTKVLLRDPTQLASQLKGRL 483          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Mouse
Match: Nwd1 (NACHT and WD repeat domain containing 1 [Source:MGI Symbol;Acc:MGI:2442268])

HSP 1 Score: 60.077 bits (144), Expect = 7.919e-10
Identity = 42/154 (27.27%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIK---LQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546
            N RKL ELP+HL  + + EEL +  L N +++  +  S  I  +L D++M     P++++ ++    ++R+ ++L    ++   L+ + L  +++ RLL +         ++ Q+  +  S  + C    L+PL  F+Q PGGPL     G H+
Sbjct:  725 NLRKLTELPFHLLHAGRLEELKQEVLGNMSWISCRGISGGIEVLLDDFDMCA---PHMNSPEV---DLVREAIQLCGPAVELRGLEKSVLYTELLARLLFFAASH---PAMIGQLCQQAQSWFRACPYPMLVPLAGFLQPPGGPLRATLTGCHK 869          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Mouse
Match: Nwd1 (NACHT and WD repeat domain containing 1 [Source:MGI Symbol;Acc:MGI:2442268])

HSP 1 Score: 60.077 bits (144), Expect = 7.943e-10
Identity = 42/154 (27.27%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIK---LQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546
            N RKL ELP+HL  + + EEL +  L N +++  +  S  I  +L D++M     P++++ ++    ++R+ ++L    ++   L+ + L  +++ RLL +         ++ Q+  +  S  + C    L+PL  F+Q PGGPL     G H+
Sbjct:  766 NLRKLTELPFHLLHAGRLEELKQEVLGNMSWISCRGISGGIEVLLDDFDMCA---PHMNSPEV---DLVREAIQLCGPAVELRGLEKSVLYTELLARLLFFAASH---PAMIGQLCQQAQSWFRACPYPMLVPLAGFLQPPGGPLRATLTGCHK 910          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Mouse
Match: Nwd1 (NACHT and WD repeat domain containing 1 [Source:MGI Symbol;Acc:MGI:2442268])

HSP 1 Score: 60.077 bits (144), Expect = 7.943e-10
Identity = 42/154 (27.27%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIK---LQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546
            N RKL ELP+HL  + + EEL +  L N +++  +  S  I  +L D++M     P++++ ++    ++R+ ++L    ++   L+ + L  +++ RLL +         ++ Q+  +  S  + C    L+PL  F+Q PGGPL     G H+
Sbjct:  725 NLRKLTELPFHLLHAGRLEELKQEVLGNMSWISCRGISGGIEVLLDDFDMCA---PHMNSPEV---DLVREAIQLCGPAVELRGLEKSVLYTELLARLLFFAASH---PAMIGQLCQQAQSWFRACPYPMLVPLAGFLQPPGGPLRATLTGCHK 869          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Mouse
Match: Nwd2 (NACHT and WD repeat domain containing 2 [Source:MGI Symbol;Acc:MGI:1920464])

HSP 1 Score: 49.6766 bits (117), Expect = 2.061e-6
Identity = 36/137 (26.28%), Postives = 67/137 (48.91%), Query Frame = 1
Query:  106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGP 516
            N RK++EL YHL +  K ++L    + NF++L+  +       +L D E+  N   Y   ++L   + L   LR   N +   P +L  ++  RLLP  + +  ++ +L  +  +K   + C ++PL+S +     P
Sbjct:  830 NHRKMSELLYHLTRCGKTDDLLYGIIMNFSWLYTMIKIGQFDKVLADIELAYN---YSQEKEL---KFLASTLRSIRNKVIAFPGSLSAELQQRLLPVVSSLPKLRHLL--LECDKDGPKYCSIVPLHSSMDVTYSP 958          
BLAST of WD_REPEATS_REGION domain-containing protein vs. UniProt/SwissProt
Match: sp|A6H603|NWD1_MOUSE (NACHT domain- and WD repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Nwd1 PE=2 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 5.556e-9
Identity = 42/154 (27.27%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIK---LQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546
            N RKL ELP+HL  + + EEL +  L N +++  +  S  I  +L D++M     P++++ ++    ++R+ ++L    ++   L+ + L  +++ RLL +         ++ Q+  +  S  + C    L+PL  F+Q PGGPL     G H+
Sbjct:  725 NLRKLTELPFHLLHAGRLEELKQEVLGNMSWISCRGISGGIEVLLDDFDMCA---PHMNSPEV---DLVREAIQLCGPAVELRGLEKSVLYTELLARLLFFAASH---PAMIGQLCQQAQSWFRACPYPMLVPLAGFLQPPGGPLRATLTGCHK 869          
BLAST of WD_REPEATS_REGION domain-containing protein vs. UniProt/SwissProt
Match: sp|Q149M9|NWD1_HUMAN (NACHT domain- and WD repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=NWD1 PE=1 SV=3)

HSP 1 Score: 55.8398 bits (133), Expect = 1.230e-7
Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 1
Query:  106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKL---QPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546
            N RKL ELPYHL  S + EEL +  L + +++  +  S  I  +L D+++     P++   D  +  ++R+ L+L    ++L   + + L  +++ RL  +         ++ Q+  +  S  + C    L+PL  F+Q PGGPL     G H+
Sbjct:  725 NLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLCA---PHL---DSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSH---PALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPGGPLRATLSGCHK 869          
BLAST of WD_REPEATS_REGION domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9ULI1|NWD2_HUMAN (NACHT and WD repeat domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NWD2 PE=2 SV=3)

HSP 1 Score: 51.2174 bits (121), Expect = 4.067e-6
Identity = 37/146 (25.34%), Postives = 69/146 (47.26%), Query Frame = 1
Query:  106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIH 543
            N RK++EL YHL +  K ++L    + NF++L+  +       +L D E+  N   Y   ++L   + L + LR   N +   P +L  ++  RLLP  + +  ++ +L  +  +K   + C ++PL+S +     P        H
Sbjct:  830 NHRKMSELLYHLTRCGKTDDLLYGIIMNFSWLYTMIKIGQFDKVLSDIELAYN---YSQEKEL---KFLANTLRSIKNKVTAFPGSLSAELQQRLLPVVSSLPKLRHLL--LECDKDGPKYCSIVPLHSSMDVTYSPERLPLSSSH 967          
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A267GGQ3 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig005707g1 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.319e-36
Identity = 73/186 (39.25%), Postives = 115/186 (61.83%), Query Frame = 1
Query:   82 TDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGE 639
            T +   RYN RKL+ELP+ L KS +  EL   CLFN+ FLHAK+S+F + ++L D       D  I+  +    +IL +CLRLS++ I   PN LGPQ+ GRLLPY+ +   ++ ++++   ++     C L+P + ++ TPGGPLE+  +G HQF    + V    N L+++SN+ +I++L +GE
Sbjct: 1483 TSRTAARYNLRKLSELPFQLLKSGRMAELASECLFNYQFLHAKLSAFPLQALLSDL------DSMIAKTNDKDARILSECLRLSASIITKSPNMLGPQVSGRLLPYYANYEKVRNLIHEC--DREGPTHCALVPGHHYLYTPGGPLEYSLEG-HQFACYGMQVTSDSNYLVSVSNQFIIWDLQTGE 1659          
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A267GDZ8 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig026001g1 PE=4 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.425e-36
Identity = 73/186 (39.25%), Postives = 115/186 (61.83%), Query Frame = 1
Query:   82 TDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGE 639
            T +   RYN RKL+ELP+ L KS +  EL   CLFN+ FLHAK+S+F + ++L D       D  I+  +    +IL +CLRLS++ I   PN LGPQ+ GRLLPY+ +   ++ ++++   ++     C L+P + ++ TPGGPLE+  +G HQF    + V    N L+++SN+ +I++L +GE
Sbjct: 1495 TSRTAARYNLRKLSELPFQLLKSGRMAELASECLFNYQFLHAKLSAFPLQALLSDL------DSMIAKTNDKDARILSECLRLSASIITKSPNMLGPQVSGRLLPYYANYEKVRNLIHEC--DREGPTHCALVPGHHYLYTPGGPLEYSLEG-HQFACYGMQVTSDSNYLVSVSNQFIIWDLQTGE 1671          
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A267FFL7 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig027966g1 PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.530e-36
Identity = 73/186 (39.25%), Postives = 115/186 (61.83%), Query Frame = 1
Query:   82 TDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGE 639
            T +   RYN RKL+ELP+ L KS +  EL   CLFN+ FLHAK+S+F + ++L D       D  I+  +    +IL +CLRLS++ I   PN LGPQ+ GRLLPY+ +   ++ ++++   ++     C L+P + ++ TPGGPLE+  +G HQF    + V    N L+++SN+ +I++L +GE
Sbjct: 1585 TSRTAARYNLRKLSELPFQLLKSGRMAELASECLFNYQFLHAKLSAFPLQALLSDL------DSMIAKTNDKDARILSECLRLSASIITKSPNMLGPQVSGRLLPYYANYEKVRNLIHEC--DREGPTHCALVPGHHYLYTPGGPLEYSLEG-HQFACYGMQVTSDSNYLVSVSNQFIIWDLQTGE 1761          
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A267FH80 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig015065g1 PE=4 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.769e-35
Identity = 73/182 (40.11%), Postives = 112/182 (61.54%), Query Frame = 1
Query:   94 CVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGE 639
             VRYN RKL+ELP+ L KS +  EL   CLFN+ FLHAK+S+F + ++L D       D  I+       +IL +CLRLS++ I   PN LGPQI GRLLPY+     ++ ++++   ++ +   C L+P + ++ TPGGPLE+  +G HQF    + V      L+++SN+ +I++L +GE
Sbjct:  168 TVRYNLRKLSELPFQLLKSGRMAELASECLFNYQFLHAKLSAFPLQALLSDL------DSMIAKTSDRNARILSECLRLSASIITKDPNMLGPQISGRLLPYYAIFEKVRHLIHEC--DREAPVHCALVPAHHYLYTPGGPLEYSLEG-HQFACYGMQVTSDSKYLVSVSNQFIIWDLQTGE 340          
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A210PU69 (Uncharacterized protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT19717 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.578e-35
Identity = 72/187 (38.50%), Postives = 119/187 (63.64%), Query Frame = 1
Query:   79 STDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGE 639
            ++D    R+N RKL+ELPYHL +S + E+L+   LFN+ +LHAK+SS  + S+L D+E +L    ++  +D+   +++ D +RLSS+ +   P+ LGPQI+GRLLPY+     I+ ++ Q   +   LE C L+P +  + TPGGPL++  +G H F    I    +   L+++SNK +I++L++GE
Sbjct:  796 TSDGTVTRFNLRKLSELPYHLVRSHQYEDLYSTVLFNYKWLHAKMSSMPLQSVLADFEDLLE---HVYQKDV---KLIADAIRLSSSILNHYPDMLGPQIIGRLLPYYQQNTNIRSLIQQC--DSDGLEDCALVPAHHCLHTPGGPLQYSLEG-HPFAPFGIGTTSNGRYLVSVSNKFIIWDLLNGE 973          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Cavefish
Match: si:ch211-212k18.6 (si:ch211-212k18.6 [Source:ZFIN;Acc:ZDB-GENE-130530-938])

HSP 1 Score: 63.929 bits (154), Expect = 2.570e-11
Identity = 46/147 (31.29%), Postives = 69/147 (46.94%), Query Frame = 1
Query:  103 YNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLL-------PYFNDMF---WIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGG 513
            +N RKL+ LPYHL +S +   LF  C+FN+ FL  K+   S   I +D +  +  D      DLV   +L   L LS + +   P  L  Q++GRLL       P   D     ++  ++ Q +     +    L+P YS +  PGG
Sbjct:  963 FNLRKLHGLPYHLIRSGQILPLFSQCIFNYEFLLHKLWGLSFCHIEEDLKAAIIPD------DLVDKDMLVQALCLSRSVLLKDPCQLASQLLGRLLHITTQDKPVAPDPLRYTYLHTLMAQCQHSTLPV----LVPSYSCLMPPGG 1099          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Cavefish
Match: nwd1 (NACHT and WD repeat domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-071116-8])

HSP 1 Score: 57.7658 bits (138), Expect = 3.723e-9
Identity = 46/155 (29.68%), Postives = 74/155 (47.74%), Query Frame = 1
Query:  106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQC---QILRDCLRLSSNCIKLQPNN-----LGPQIVGR---LLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDG 537
            NFRKL+ELP+HL  + K EEL ++ L N  +L+ K  S  + S++QD+             D++ C   +++R+C  L    I     N     L  +I  R   L   + D+  I  + +Q +    S     L+P  SF++ PGG L+   +G
Sbjct:  725 NFRKLHELPFHLLHAGKWEELRQLLLGNLEWLYCKTLSCGVASVIQDFTFC---------TDVMDCPEIRLIRECFLLLKPTIDFIDGNIDSSLLCTEITARFQALAHAYPDL--IGCLYSQCQDWFASCADPVLVPRCSFMEAPGGALKNTLNG 868          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Cavefish
Match: nwd1 (NACHT and WD repeat domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-071116-8])

HSP 1 Score: 56.6102 bits (135), Expect = 7.585e-9
Identity = 45/155 (29.03%), Postives = 74/155 (47.74%), Query Frame = 1
Query:  106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQC---QILRDCLRLSSNCIKLQPNN-----LGPQIVGR---LLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDG 537
            NFRKL+ELP+HL  + K EEL ++ L +  +L+ K  S  + S++QD+             D++ C   +++R+C  L    I     N     L  +I  R   L   + D+  I  + +Q +    S     L+P  SF++ PGG L+   +G
Sbjct:  401 NFRKLHELPFHLLHAGKWEELRQLLLGSLEWLYCKTLSCGVASVIQDFTFC---------TDVMDCPEIRLIRECFLLLKPTIDFIDGNIDSSLLCTEITARFQALAHAYPDL--IGCLYSQCQDWFASCADPVLVPRCSFMEAPGGALKNTLNG 544          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Nematostella
Match: EDO31117 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SYV4])

HSP 1 Score: 90.8929 bits (224), Expect = 8.031e-21
Identity = 59/165 (35.76%), Postives = 88/165 (53.33%), Query Frame = 1
Query:  103 YNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLIT 597
            +N RKL+ELPYHL  SK+   L +  LFNF ++ AKV + S+ S+L DY+  L   P     DL   ++++D L LSS+ IK   N+L PQ++GRLL +      I  +L Q     Y+     + P+ + + +PGGPL     G H     C+ V      ++T
Sbjct:  761 FNLRKLSELPYHLVHSKQFNALSQEVLFNFEWIMAKVKAQSLNSVLADYDTALQAKP-----DL-DIRLVQDTLILSSSNIKHDLNSLAPQLIGRLLAFKGKFPRIASLLEQAYRWIYARNIPVIAPMNACLISPGGPLITNLHG-HTQRLDCVTVTRDDKFIVT 918          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Planmine SMEST
Match: SMESG000018097.1 (SMESG000018097.1)

HSP 1 Score: 468.774 bits (1205), Expect = 6.719e-156
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1
Query:    1 QNKKMPDKNVRNCRLKLKKASIAKSQSTDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGEXXXXXXXXXXXXXXXXXXXXXXPNTLKTCFACTSGG 747
            QNKKMPDKNVRNCRLKLKKASIAKSQSTDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGEIILHLSIKGLKSSSSFKILKFIPNTLKTCFACTSGG
Sbjct:  480 QNKKMPDKNVRNCRLKLKKASIAKSQSTDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGEIILHLSIKGLKSSSSFKILKFIPNTLKTCFACTSGG 728          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Planmine SMEST
Match: SMESG000018097.1 (SMESG000018097.1)

HSP 1 Score: 467.618 bits (1202), Expect = 9.117e-154
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1
Query:    1 QNKKMPDKNVRNCRLKLKKASIAKSQSTDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGEXXXXXXXXXXXXXXXXXXXXXXPNTLKTCFACTSGG 747
            QNKKMPDKNVRNCRLKLKKASIAKSQSTDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGEIILHLSIKGLKSSSSFKILKFIPNTLKTCFACTSGG
Sbjct:  733 QNKKMPDKNVRNCRLKLKKASIAKSQSTDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGEIILHLSIKGLKSSSSFKILKFIPNTLKTCFACTSGG 981          
BLAST of WD_REPEATS_REGION domain-containing protein vs. Planmine SMEST
Match: SMESG000012845.1 (SMESG000012845.1)

HSP 1 Score: 50.447 bits (119), Expect = 7.209e-7
Identity = 32/139 (23.02%), Postives = 69/139 (49.64%), Query Frame = 1
Query:  103 YNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPL 519
            YN+RK  +L  HL      +EL +  +F+F++L+ K  +  +  +L D+++  N    I         +L + +  S+  I+   ++L  +++ +LLPY +    ++ ++     +K + +    +P+Y   + PG PL
Sbjct:  796 YNYRKFRQLVRHLVAIDNYDELIKNVIFDFDYLYNKTKALKVSELLDDFQLARNGGKEIV--------LLEESINNSALVIENDLDSLAGELIMQLLPYVSYYPNLRFLIENC--DKVAPKHNAFVPIYPSNKLPGSPL 924          
The following BLAST results are available for this feature:
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
NWD12.536e-827.92NACHT and WD repeat domain containing 1 [Source:HG... [more]
NWD12.536e-827.92NACHT and WD repeat domain containing 1 [Source:HG... [more]
NWD12.536e-827.92NACHT and WD repeat domain containing 1 [Source:HG... [more]
NWD12.554e-827.92NACHT and WD repeat domain containing 1 [Source:HG... [more]
NWD12.561e-827.92NACHT and WD repeat domain containing 1 [Source:HG... [more]
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BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
T05C3.21.666e-3035.71pep chromosome:WBcel235:V:5493747:5503010:1 gene:W... [more]
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BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CG101851.610e-3034.57gene:FBgn0038397 transcript:FBtr0083235[more]
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BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
si:ch211-212k18.62.299e-934.34si:ch211-212k18.6 [Source:ZFIN;Acc:ZDB-GENE-130530... [more]
nwd13.071e-629.49NACHT and WD repeat domain containing 1 [Source:ZF... [more]
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BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ppp1r3c.12.021e-827.23protein phosphatase 1, regulatory (inhibitor) subu... [more]
ENSXETT00000003639.12.683e-631.25uncharacterized LOC101730828 [Source:NCBI gene;Acc... [more]
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BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Nwd17.919e-1027.27NACHT and WD repeat domain containing 1 [Source:MG... [more]
Nwd17.943e-1027.27NACHT and WD repeat domain containing 1 [Source:MG... [more]
Nwd17.943e-1027.27NACHT and WD repeat domain containing 1 [Source:MG... [more]
Nwd22.061e-626.28NACHT and WD repeat domain containing 2 [Source:MG... [more]
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BLAST of WD_REPEATS_REGION domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 3
Match NameE-valueIdentityDescription
sp|A6H603|NWD1_MOUSE5.556e-927.27NACHT domain- and WD repeat-containing protein 1 O... [more]
sp|Q149M9|NWD1_HUMAN1.230e-727.92NACHT domain- and WD repeat-containing protein 1 O... [more]
sp|Q9ULI1|NWD2_HUMAN4.067e-625.34NACHT and WD repeat domain-containing protein 2 OS... [more]
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BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A267GGQ31.319e-3639.25Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267GDZ81.425e-3639.25Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267FFL72.530e-3639.25Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267FH801.769e-3540.11Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A210PU692.578e-3538.50Uncharacterized protein OS=Mizuhopecten yessoensis... [more]
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BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
si:ch211-212k18.62.570e-1131.29si:ch211-212k18.6 [Source:ZFIN;Acc:ZDB-GENE-130530... [more]
nwd13.723e-929.68NACHT and WD repeat domain containing 1 [Source:ZF... [more]
nwd17.585e-929.03NACHT and WD repeat domain containing 1 [Source:ZF... [more]
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BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO311178.031e-2135.76Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of WD_REPEATS_REGION domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000018097.16.719e-156100.00SMESG000018097.1[more]
SMESG000018097.19.117e-154100.00SMESG000018097.1[more]
SMESG000012845.17.209e-723.02SMESG000012845.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30034465 ID=SMED30034465|Name=WD_REPEATS_REGION domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=748bp
CAAAATAAAAAAATGCCTGATAAAAACGTACGAAATTGCCGATTGAAATT
GAAGAAAGCTTCAATTGCTAAAAGTCAATCAACAGATAAAATTTGCGTTA
GATATAATTTCAGGAAACTTAATGAGCTTCCATATCATCTTTACAAGTCT
AAGAAAAAGGAAGAATTATTTGAAATGTGTTTATTCAATTTTAATTTTTT
GCATGCCAAAGTGAGCTCTTTCTCAATTTTATCCATTTTACAAGATTATG
AAATGGTTTTAAATGATGACCCATATATAAGTAATGAAGATTTAGTTCAG
TGTCAAATACTGCGCGATTGTCTAAGATTATCATCCAATTGCATTAAACT
TCAACCAAATAATTTAGGTCCCCAAATCGTAGGGCGTTTATTACCATACT
TCAATGATATGTTTTGGATACAAATGATTTTAAATCAAATTCGATTTGAA
AAATATTCTCTTGAAAAATGTTGTCTTATTCCATTGTATTCTTTTATACA
AACTCCTGGAGGACCCCTAGAATTCTGTTTTGATGGAATTCATCAATTTC
CACAACAATGCATACATGTTATACCAAGCCAAAATCGTTTAATAACTATG
TCCAATAAAATTGTCATATTTAACCTTGTAAGCGGTGAAATTATTTTGCA
TTTATCAATTAAAGGGCTCAAGTCAAGTTCCAGTTTTAAAATATTAAAAT
TTATACCAAATACTTTAAAAACTTGTTTTGCTTGTACTAGTGGAGGAC
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protein sequence of SMED30034465-orf-1

>SMED30034465-orf-1 ID=SMED30034465-orf-1|Name=SMED30034465-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=249bp
QNKKMPDKNVRNCRLKLKKASIAKSQSTDKICVRYNFRKLNELPYHLYKS
KKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQ
CQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFE
KYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITM
SNKIVIFNLVSGEIILHLSIKGLKSSSSFKILKFIPNTLKTCFACTSGG
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0000166nucleotide binding
GO:0003674molecular_function
GO:0005524ATP binding
Vocabulary: cellular component
TermDefinition
GO:0005682U5 snRNP
GO:0005737cytoplasm
GO:0005829cytosol
GO:0071011precatalytic spliceosome
GO:0071013catalytic step 2 spliceosome
Vocabulary: biological process
TermDefinition
GO:0008380RNA splicing
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.25.40.370coord: 10..127
e-value: 5.3E-6
score: 28.2
NoneNo IPR availablePANTHERPTHR19871:SF14GH25853Pcoord: 24..231
NoneNo IPR availablePANTHERPTHR19871BETA TRANSDUCIN-RELATED PROTEINcoord: 24..231