WD_REPEATS_REGION domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppEmbryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30034465 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Match: NWD1 (NACHT and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:27619]) HSP 1 Score: 55.8398 bits (133), Expect = 2.536e-8 Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 1 Query: 106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKL---QPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546 N RKL ELPYHL S + EEL + L + +++ + S I +L D+++ P++ D + ++R+ L+L ++L + + L +++ RL + ++ Q+ + S + C L+PL F+Q PGGPL G H+ Sbjct: 725 NLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLCA---PHL---DSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSH---PALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPGGPLRATLSGCHK 869
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Match: NWD1 (NACHT and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:27619]) HSP 1 Score: 55.8398 bits (133), Expect = 2.536e-8 Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 1 Query: 106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKL---QPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546 N RKL ELPYHL S + EEL + L + +++ + S I +L D+++ P++ D + ++R+ L+L ++L + + L +++ RL + ++ Q+ + S + C L+PL F+Q PGGPL G H+ Sbjct: 725 NLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLCA---PHL---DSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSH---PALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPGGPLRATLSGCHK 869
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Match: NWD1 (NACHT and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:27619]) HSP 1 Score: 55.8398 bits (133), Expect = 2.536e-8 Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 1 Query: 106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKL---QPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546 N RKL ELPYHL S + EEL + L + +++ + S I +L D+++ P++ D + ++R+ L+L ++L + + L +++ RL + ++ Q+ + S + C L+PL F+Q PGGPL G H+ Sbjct: 725 NLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLCA---PHL---DSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSH---PALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPGGPLRATLSGCHK 869
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Match: NWD1 (NACHT and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:27619]) HSP 1 Score: 55.8398 bits (133), Expect = 2.554e-8 Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 1 Query: 106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKL---QPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546 N RKL ELPYHL S + EEL + L + +++ + S I +L D+++ P++ D + ++R+ L+L ++L + + L +++ RL + ++ Q+ + S + C L+PL F+Q PGGPL G H+ Sbjct: 725 NLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLCA---PHL---DSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSH---PALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPGGPLRATLSGCHK 869
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Match: NWD1 (NACHT and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:27619]) HSP 1 Score: 55.8398 bits (133), Expect = 2.561e-8 Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 1 Query: 106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKL---QPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546 N RKL ELPYHL S + EEL + L + +++ + S I +L D+++ P++ D + ++R+ L+L ++L + + L +++ RL + ++ Q+ + S + C L+PL F+Q PGGPL G H+ Sbjct: 725 NLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLCA---PHL---DSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSH---PALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPGGPLRATLSGCHK 869
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Celegans
Match: T05C3.2 (pep chromosome:WBcel235:V:5493747:5503010:1 gene:WBGene00020254.1 transcript:T05C3.2.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:T05C3.2) HSP 1 Score: 119.783 bits (299), Expect = 1.666e-30 Identity = 65/182 (35.71%), Postives = 107/182 (58.79%), Query Frame = 1 Query: 100 RYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLND--DPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGE 639 RYN RKLNELPYHL +S + +EL +CLF++ FLHAKVSSF + S++ DYE + + D IS Q + D LRLS++ + P+ L +++GRLLP ++ +L I+ +K + +P + PGGPL+F + HQF + + + L++ S +I+++++ +G+ Sbjct: 856 RYNTRKLNELPYHLLRSGRVDELLTLCLFDYEFLHAKVSSFPLQSLIADYEDAIQNVRDVEISR----QLSLAVDALRLSASILSRNPSMLAFELLGRLLPLVATNKYVSKLL--IKCDKEGPQHNSFVPAHHCFHAPGGPLKFSLEE-HQFAVFGMQLTSDRKLLVSTSTQIIVWDVSTGD 1030
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Fly
Match: CG10185 (gene:FBgn0038397 transcript:FBtr0083235) HSP 1 Score: 120.168 bits (300), Expect = 1.610e-30 Identity = 65/188 (34.57%), Postives = 107/188 (56.91%), Query Frame = 1 Query: 79 STDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYE-MVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGE 639 S D + RYN RK ELP+H +S++ ++LFE LFN+++LHAK+SS + ++L D+E N D + +L+ ++ D LRL + + PN L PQ+VGRLLP I+M+L ++ + C LIP+ + TPGGPL++ +G HQF + ++++S + F+L + + Sbjct: 780 SKDGLSKRYNLRKFGELPFHFVRSRRFKDLFEHVLFNYDWLHAKLSSCPLQAVLADFEDASSNTDDKEAKRELM---LVSDALRLGGAILAIYPNMLAPQLVGRLLPEIGGNPNIKMLLRAC--DRSGPKDCALIPVNHCLHTPGGPLKYSLEG-HQFAVFAFCLTSDMRYMVSISTHFITFDLSTSD 961
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Zebrafish
Match: si:ch211-212k18.6 (si:ch211-212k18.6 [Source:ZFIN;Acc:ZDB-GENE-130530-938]) HSP 1 Score: 58.5362 bits (140), Expect = 2.299e-9 Identity = 34/99 (34.34%), Postives = 51/99 (51.52%), Query Frame = 1 Query: 94 CVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRL 390 C +N RKL+ LPYH S + L CLFN+ FL K+ SI + +D + + I ++DL+ +L L LS + + P L Q++GRL Sbjct: 1038 CYVFNLRKLHCLPYHYIHSGQIIPLLTECLFNYEFLLHKLWGLSIYHVQEDLKAAV-----IVDKDLLDVAVLAQVLSLSHSVLLNDPCQLASQLLGRL 1131
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Zebrafish
Match: nwd1 (NACHT and WD repeat domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-071116-8]) HSP 1 Score: 48.9062 bits (115), Expect = 3.071e-6 Identity = 46/156 (29.49%), Postives = 73/156 (46.79%), Query Frame = 1 Query: 106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMV--LNDDPYISNEDLVQCQILRDCLRLSSNCI-----KLQPNNLGPQIVGR---LLPYFNDMFWIQMILNQIR--FEKYSLEKCCLIPLYSFIQTPGGPLEFCFDG 537 N RK++ELPYHL + K +EL + L + ++L K + ++QD + L D P I Q+L++ L + ++ P+ L +I R L ++ M I + +Q FE YS L+P SF + PGGPL+ G Sbjct: 783 NLRKIHELPYHLAHAGKWDELRQSVLGSLDWLCCKTLQCGVSCVIQDLTLCTDLTDCPEI--------QLLKETFLLLKPSLDFSDGRVDPSLLVTEIFARLQGLADHYPSM--IGQLCSQCMDWFESYS--DPLLVPKCSFFEAPGGPLKSTLRG 926
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Xenopus
Match: ppp1r3c.1 (protein phosphatase 1, regulatory (inhibitor) subunit 3C, gene 1 [Source:Xenbase;Acc:XB-GENE-969181]) HSP 1 Score: 56.225 bits (134), Expect = 2.021e-8 Identity = 52/191 (27.23%), Postives = 91/191 (47.64%), Query Frame = 1 Query: 106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIV-----GRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQF-------PQQCIHVIPSQNRLITMSN--KIVIFNLVSG 636 N RK++ELPYHL + +EL L N +++ +K+ S I S+++D+EM + IS+ +++ +LRD LS+ C+ P+N P IV R+ + I + Q + IP F Q PGGPL+ G + P + V+ S++ ++ + N I + + ++G Sbjct: 719 NRRKMSELPYHLLNAGCIDELQGEILGNMDWISSKIVSCGIQSVIKDFEMSVK---LISSREIM---LLRDT--LSTLCL---PSNTDPVIVFTEMLARMHFFQLSYRLIDELCQQCTGWLHQYPHPTFIPTCGFFQPPGGPLQTTVTGFKKGVTVMELCPDHDLLVVGSEDGIMIVWNIKDIEVIHTLTG 898
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000003639.1 (uncharacterized LOC101730828 [Source:NCBI gene;Acc:101730828]) HSP 1 Score: 49.6766 bits (117), Expect = 2.683e-6 Identity = 30/96 (31.25%), Postives = 50/96 (52.08%), Query Frame = 1 Query: 103 YNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRL 390 +N RK+ + +HL S + L CLFN+ +L KV + S++ + +D + +N P DL +L + L+LS+ + P L Q+ GRL Sbjct: 393 FNLRKILGISHHLIHSNQFPRLITECLFNYEYLLHKVWATSVVGLQEDIKAAIN--PERPAPDL---NLLSEALQLSTKVLLRDPTQLASQLKGRL 483
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Mouse
Match: Nwd1 (NACHT and WD repeat domain containing 1 [Source:MGI Symbol;Acc:MGI:2442268]) HSP 1 Score: 60.077 bits (144), Expect = 7.919e-10 Identity = 42/154 (27.27%), Postives = 80/154 (51.95%), Query Frame = 1 Query: 106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIK---LQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546 N RKL ELP+HL + + EEL + L N +++ + S I +L D++M P++++ ++ ++R+ ++L ++ L+ + L +++ RLL + ++ Q+ + S + C L+PL F+Q PGGPL G H+ Sbjct: 725 NLRKLTELPFHLLHAGRLEELKQEVLGNMSWISCRGISGGIEVLLDDFDMCA---PHMNSPEV---DLVREAIQLCGPAVELRGLEKSVLYTELLARLLFFAASH---PAMIGQLCQQAQSWFRACPYPMLVPLAGFLQPPGGPLRATLTGCHK 869
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Mouse
Match: Nwd1 (NACHT and WD repeat domain containing 1 [Source:MGI Symbol;Acc:MGI:2442268]) HSP 1 Score: 60.077 bits (144), Expect = 7.943e-10 Identity = 42/154 (27.27%), Postives = 80/154 (51.95%), Query Frame = 1 Query: 106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIK---LQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546 N RKL ELP+HL + + EEL + L N +++ + S I +L D++M P++++ ++ ++R+ ++L ++ L+ + L +++ RLL + ++ Q+ + S + C L+PL F+Q PGGPL G H+ Sbjct: 766 NLRKLTELPFHLLHAGRLEELKQEVLGNMSWISCRGISGGIEVLLDDFDMCA---PHMNSPEV---DLVREAIQLCGPAVELRGLEKSVLYTELLARLLFFAASH---PAMIGQLCQQAQSWFRACPYPMLVPLAGFLQPPGGPLRATLTGCHK 910
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Mouse
Match: Nwd1 (NACHT and WD repeat domain containing 1 [Source:MGI Symbol;Acc:MGI:2442268]) HSP 1 Score: 60.077 bits (144), Expect = 7.943e-10 Identity = 42/154 (27.27%), Postives = 80/154 (51.95%), Query Frame = 1 Query: 106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIK---LQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546 N RKL ELP+HL + + EEL + L N +++ + S I +L D++M P++++ ++ ++R+ ++L ++ L+ + L +++ RLL + ++ Q+ + S + C L+PL F+Q PGGPL G H+ Sbjct: 725 NLRKLTELPFHLLHAGRLEELKQEVLGNMSWISCRGISGGIEVLLDDFDMCA---PHMNSPEV---DLVREAIQLCGPAVELRGLEKSVLYTELLARLLFFAASH---PAMIGQLCQQAQSWFRACPYPMLVPLAGFLQPPGGPLRATLTGCHK 869
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Mouse
Match: Nwd2 (NACHT and WD repeat domain containing 2 [Source:MGI Symbol;Acc:MGI:1920464]) HSP 1 Score: 49.6766 bits (117), Expect = 2.061e-6 Identity = 36/137 (26.28%), Postives = 67/137 (48.91%), Query Frame = 1 Query: 106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGP 516 N RK++EL YHL + K ++L + NF++L+ + +L D E+ N Y ++L + L LR N + P +L ++ RLLP + + ++ +L + +K + C ++PL+S + P Sbjct: 830 NHRKMSELLYHLTRCGKTDDLLYGIIMNFSWLYTMIKIGQFDKVLADIELAYN---YSQEKEL---KFLASTLRSIRNKVIAFPGSLSAELQQRLLPVVSSLPKLRHLL--LECDKDGPKYCSIVPLHSSMDVTYSP 958
BLAST of WD_REPEATS_REGION domain-containing protein vs. UniProt/SwissProt
Match: sp|A6H603|NWD1_MOUSE (NACHT domain- and WD repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Nwd1 PE=2 SV=2) HSP 1 Score: 60.077 bits (144), Expect = 5.556e-9 Identity = 42/154 (27.27%), Postives = 80/154 (51.95%), Query Frame = 1 Query: 106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIK---LQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546 N RKL ELP+HL + + EEL + L N +++ + S I +L D++M P++++ ++ ++R+ ++L ++ L+ + L +++ RLL + ++ Q+ + S + C L+PL F+Q PGGPL G H+ Sbjct: 725 NLRKLTELPFHLLHAGRLEELKQEVLGNMSWISCRGISGGIEVLLDDFDMCA---PHMNSPEV---DLVREAIQLCGPAVELRGLEKSVLYTELLARLLFFAASH---PAMIGQLCQQAQSWFRACPYPMLVPLAGFLQPPGGPLRATLTGCHK 869
BLAST of WD_REPEATS_REGION domain-containing protein vs. UniProt/SwissProt
Match: sp|Q149M9|NWD1_HUMAN (NACHT domain- and WD repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=NWD1 PE=1 SV=3) HSP 1 Score: 55.8398 bits (133), Expect = 1.230e-7 Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 1 Query: 106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKL---QPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCC----LIPLYSFIQTPGGPLEFCFDGIHQ 546 N RKL ELPYHL S + EEL + L + +++ + S I +L D+++ P++ D + ++R+ L+L ++L + + L +++ RL + ++ Q+ + S + C L+PL F+Q PGGPL G H+ Sbjct: 725 NLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLCA---PHL---DSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSH---PALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPGGPLRATLSGCHK 869
BLAST of WD_REPEATS_REGION domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9ULI1|NWD2_HUMAN (NACHT and WD repeat domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NWD2 PE=2 SV=3) HSP 1 Score: 51.2174 bits (121), Expect = 4.067e-6 Identity = 37/146 (25.34%), Postives = 69/146 (47.26%), Query Frame = 1 Query: 106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIH 543 N RK++EL YHL + K ++L + NF++L+ + +L D E+ N Y ++L + L + LR N + P +L ++ RLLP + + ++ +L + +K + C ++PL+S + P H Sbjct: 830 NHRKMSELLYHLTRCGKTDDLLYGIIMNFSWLYTMIKIGQFDKVLSDIELAYN---YSQEKEL---KFLANTLRSIKNKVTAFPGSLSAELQQRLLPVVSSLPKLRHLL--LECDKDGPKYCSIVPLHSSMDVTYSPERLPLSSSH 967
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A267GGQ3 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig005707g1 PE=4 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 1.319e-36 Identity = 73/186 (39.25%), Postives = 115/186 (61.83%), Query Frame = 1 Query: 82 TDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGE 639 T + RYN RKL+ELP+ L KS + EL CLFN+ FLHAK+S+F + ++L D D I+ + +IL +CLRLS++ I PN LGPQ+ GRLLPY+ + ++ ++++ ++ C L+P + ++ TPGGPLE+ +G HQF + V N L+++SN+ +I++L +GE Sbjct: 1483 TSRTAARYNLRKLSELPFQLLKSGRMAELASECLFNYQFLHAKLSAFPLQALLSDL------DSMIAKTNDKDARILSECLRLSASIITKSPNMLGPQVSGRLLPYYANYEKVRNLIHEC--DREGPTHCALVPGHHYLYTPGGPLEYSLEG-HQFACYGMQVTSDSNYLVSVSNQFIIWDLQTGE 1659
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A267GDZ8 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig026001g1 PE=4 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 1.425e-36 Identity = 73/186 (39.25%), Postives = 115/186 (61.83%), Query Frame = 1 Query: 82 TDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGE 639 T + RYN RKL+ELP+ L KS + EL CLFN+ FLHAK+S+F + ++L D D I+ + +IL +CLRLS++ I PN LGPQ+ GRLLPY+ + ++ ++++ ++ C L+P + ++ TPGGPLE+ +G HQF + V N L+++SN+ +I++L +GE Sbjct: 1495 TSRTAARYNLRKLSELPFQLLKSGRMAELASECLFNYQFLHAKLSAFPLQALLSDL------DSMIAKTNDKDARILSECLRLSASIITKSPNMLGPQVSGRLLPYYANYEKVRNLIHEC--DREGPTHCALVPGHHYLYTPGGPLEYSLEG-HQFACYGMQVTSDSNYLVSVSNQFIIWDLQTGE 1671
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A267FFL7 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig027966g1 PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 2.530e-36 Identity = 73/186 (39.25%), Postives = 115/186 (61.83%), Query Frame = 1 Query: 82 TDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGE 639 T + RYN RKL+ELP+ L KS + EL CLFN+ FLHAK+S+F + ++L D D I+ + +IL +CLRLS++ I PN LGPQ+ GRLLPY+ + ++ ++++ ++ C L+P + ++ TPGGPLE+ +G HQF + V N L+++SN+ +I++L +GE Sbjct: 1585 TSRTAARYNLRKLSELPFQLLKSGRMAELASECLFNYQFLHAKLSAFPLQALLSDL------DSMIAKTNDKDARILSECLRLSASIITKSPNMLGPQVSGRLLPYYANYEKVRNLIHEC--DREGPTHCALVPGHHYLYTPGGPLEYSLEG-HQFACYGMQVTSDSNYLVSVSNQFIIWDLQTGE 1761
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A267FH80 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig015065g1 PE=4 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.769e-35 Identity = 73/182 (40.11%), Postives = 112/182 (61.54%), Query Frame = 1 Query: 94 CVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGE 639 VRYN RKL+ELP+ L KS + EL CLFN+ FLHAK+S+F + ++L D D I+ +IL +CLRLS++ I PN LGPQI GRLLPY+ ++ ++++ ++ + C L+P + ++ TPGGPLE+ +G HQF + V L+++SN+ +I++L +GE Sbjct: 168 TVRYNLRKLSELPFQLLKSGRMAELASECLFNYQFLHAKLSAFPLQALLSDL------DSMIAKTSDRNARILSECLRLSASIITKDPNMLGPQISGRLLPYYAIFEKVRHLIHEC--DREAPVHCALVPAHHYLYTPGGPLEYSLEG-HQFACYGMQVTSDSKYLVSVSNQFIIWDLQTGE 340
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A210PU69 (Uncharacterized protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT19717 PE=4 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 2.578e-35 Identity = 72/187 (38.50%), Postives = 119/187 (63.64%), Query Frame = 1 Query: 79 STDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGE 639 ++D R+N RKL+ELPYHL +S + E+L+ LFN+ +LHAK+SS + S+L D+E +L ++ +D+ +++ D +RLSS+ + P+ LGPQI+GRLLPY+ I+ ++ Q + LE C L+P + + TPGGPL++ +G H F I + L+++SNK +I++L++GE Sbjct: 796 TSDGTVTRFNLRKLSELPYHLVRSHQYEDLYSTVLFNYKWLHAKMSSMPLQSVLADFEDLLE---HVYQKDV---KLIADAIRLSSSILNHYPDMLGPQIIGRLLPYYQQNTNIRSLIQQC--DSDGLEDCALVPAHHCLHTPGGPLQYSLEG-HPFAPFGIGTTSNGRYLVSVSNKFIIWDLLNGE 973
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Cavefish
Match: si:ch211-212k18.6 (si:ch211-212k18.6 [Source:ZFIN;Acc:ZDB-GENE-130530-938]) HSP 1 Score: 63.929 bits (154), Expect = 2.570e-11 Identity = 46/147 (31.29%), Postives = 69/147 (46.94%), Query Frame = 1 Query: 103 YNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLL-------PYFNDMF---WIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGG 513 +N RKL+ LPYHL +S + LF C+FN+ FL K+ S I +D + + D DLV +L L LS + + P L Q++GRLL P D ++ ++ Q + + L+P YS + PGG Sbjct: 963 FNLRKLHGLPYHLIRSGQILPLFSQCIFNYEFLLHKLWGLSFCHIEEDLKAAIIPD------DLVDKDMLVQALCLSRSVLLKDPCQLASQLLGRLLHITTQDKPVAPDPLRYTYLHTLMAQCQHSTLPV----LVPSYSCLMPPGG 1099
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Cavefish
Match: nwd1 (NACHT and WD repeat domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-071116-8]) HSP 1 Score: 57.7658 bits (138), Expect = 3.723e-9 Identity = 46/155 (29.68%), Postives = 74/155 (47.74%), Query Frame = 1 Query: 106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQC---QILRDCLRLSSNCIKLQPNN-----LGPQIVGR---LLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDG 537 NFRKL+ELP+HL + K EEL ++ L N +L+ K S + S++QD+ D++ C +++R+C L I N L +I R L + D+ I + +Q + S L+P SF++ PGG L+ +G Sbjct: 725 NFRKLHELPFHLLHAGKWEELRQLLLGNLEWLYCKTLSCGVASVIQDFTFC---------TDVMDCPEIRLIRECFLLLKPTIDFIDGNIDSSLLCTEITARFQALAHAYPDL--IGCLYSQCQDWFASCADPVLVPRCSFMEAPGGALKNTLNG 868
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Cavefish
Match: nwd1 (NACHT and WD repeat domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-071116-8]) HSP 1 Score: 56.6102 bits (135), Expect = 7.585e-9 Identity = 45/155 (29.03%), Postives = 74/155 (47.74%), Query Frame = 1 Query: 106 NFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQC---QILRDCLRLSSNCIKLQPNN-----LGPQIVGR---LLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDG 537 NFRKL+ELP+HL + K EEL ++ L + +L+ K S + S++QD+ D++ C +++R+C L I N L +I R L + D+ I + +Q + S L+P SF++ PGG L+ +G Sbjct: 401 NFRKLHELPFHLLHAGKWEELRQLLLGSLEWLYCKTLSCGVASVIQDFTFC---------TDVMDCPEIRLIRECFLLLKPTIDFIDGNIDSSLLCTEITARFQALAHAYPDL--IGCLYSQCQDWFASCADPVLVPRCSFMEAPGGALKNTLNG 544
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Nematostella
Match: EDO31117 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SYV4]) HSP 1 Score: 90.8929 bits (224), Expect = 8.031e-21 Identity = 59/165 (35.76%), Postives = 88/165 (53.33%), Query Frame = 1 Query: 103 YNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLIT 597 +N RKL+ELPYHL SK+ L + LFNF ++ AKV + S+ S+L DY+ L P DL ++++D L LSS+ IK N+L PQ++GRLL + I +L Q Y+ + P+ + + +PGGPL G H C+ V ++T Sbjct: 761 FNLRKLSELPYHLVHSKQFNALSQEVLFNFEWIMAKVKAQSLNSVLADYDTALQAKP-----DL-DIRLVQDTLILSSSNIKHDLNSLAPQLIGRLLAFKGKFPRIASLLEQAYRWIYARNIPVIAPMNACLISPGGPLITNLHG-HTQRLDCVTVTRDDKFIVT 918
BLAST of WD_REPEATS_REGION domain-containing protein vs. Planmine SMEST
Match: SMESG000018097.1 (SMESG000018097.1) HSP 1 Score: 468.774 bits (1205), Expect = 6.719e-156 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1 Query: 1 QNKKMPDKNVRNCRLKLKKASIAKSQSTDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGEXXXXXXXXXXXXXXXXXXXXXXPNTLKTCFACTSGG 747 QNKKMPDKNVRNCRLKLKKASIAKSQSTDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGEIILHLSIKGLKSSSSFKILKFIPNTLKTCFACTSGG Sbjct: 480 QNKKMPDKNVRNCRLKLKKASIAKSQSTDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGEIILHLSIKGLKSSSSFKILKFIPNTLKTCFACTSGG 728
BLAST of WD_REPEATS_REGION domain-containing protein vs. Planmine SMEST
Match: SMESG000018097.1 (SMESG000018097.1) HSP 1 Score: 467.618 bits (1202), Expect = 9.117e-154 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1 Query: 1 QNKKMPDKNVRNCRLKLKKASIAKSQSTDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGEXXXXXXXXXXXXXXXXXXXXXXPNTLKTCFACTSGG 747 QNKKMPDKNVRNCRLKLKKASIAKSQSTDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGEIILHLSIKGLKSSSSFKILKFIPNTLKTCFACTSGG Sbjct: 733 QNKKMPDKNVRNCRLKLKKASIAKSQSTDKICVRYNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPLEFCFDGIHQFPQQCIHVIPSQNRLITMSNKIVIFNLVSGEIILHLSIKGLKSSSSFKILKFIPNTLKTCFACTSGG 981
BLAST of WD_REPEATS_REGION domain-containing protein vs. Planmine SMEST
Match: SMESG000012845.1 (SMESG000012845.1) HSP 1 Score: 50.447 bits (119), Expect = 7.209e-7 Identity = 32/139 (23.02%), Postives = 69/139 (49.64%), Query Frame = 1 Query: 103 YNFRKLNELPYHLYKSKKKEELFEMCLFNFNFLHAKVSSFSILSILQDYEMVLNDDPYISNEDLVQCQILRDCLRLSSNCIKLQPNNLGPQIVGRLLPYFNDMFWIQMILNQIRFEKYSLEKCCLIPLYSFIQTPGGPL 519 YN+RK +L HL +EL + +F+F++L+ K + + +L D+++ N I +L + + S+ I+ ++L +++ +LLPY + ++ ++ +K + + +P+Y + PG PL Sbjct: 796 YNYRKFRQLVRHLVAIDNYDELIKNVIFDFDYLYNKTKALKVSELLDDFQLARNGGKEIV--------LLEESINNSALVIENDLDSLAGELIMQLLPYVSYYPNLRFLIENC--DKVAPKHNAFVPIYPSNKLPGSPL 924 The following BLAST results are available for this feature:
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of WD_REPEATS_REGION domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 3
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of WD_REPEATS_REGION domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30034465 ID=SMED30034465|Name=WD_REPEATS_REGION domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=748bpback to top protein sequence of SMED30034465-orf-1 >SMED30034465-orf-1 ID=SMED30034465-orf-1|Name=SMED30034465-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=249bp QNKKMPDKNVRNCRLKLKKASIAKSQSTDKICVRYNFRKLNELPYHLYKSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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