DNA-directed RNA polymerase subunit

Overview


Name	DNA-directed RNA polymerase subunit
Smed ID	SMED30034401
Length (bp)	4094

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of DNA-directed RNA polymerase subunit (SMED30034401) t-SNE clustered cells

Violin plots show distribution of expression levels for DNA-directed RNA polymerase subunit (SMED30034401) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of DNA-directed RNA polymerase subunit (SMED30034401) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for DNA-directed RNA polymerase subunit (SMED30034401) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30034401

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 5

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30034401	SMESG000069361.1	SmedASXL_017441	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30034401	SMESG000069361.1	SmedASXL_017441	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
neoblast	SMED30034401	SMESG000069361.1	dd_Smed_v4_11775_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30034401	SMESG000075647.1 SMESG000075219.1 SMESG000069350.1 SMESG000069339.1 SMESG000064447.1 SMESG000058621.1 SMESG000041678.1 SMESG000038782.1 SMESG000019458.1 SMESG000069361.1	Contig33429	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30034401	SMESG000075647.1 SMESG000075219.1 SMESG000069350.1 SMESG000069339.1 SMESG000064447.1 SMESG000058621.1 SMESG000041678.1 SMESG000038782.1 SMESG000019458.1 SMESG000069361.1	Contig33429	uc_Smed_v2	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Match: POLR3A (RNA polymerase III subunit A [Source:HGNC Symbol;Acc:HGNC:30074])

HSP 1 Score: 929.472 bits (2401), Expect = 0.000e+0
Identity = 562/1397 (40.23%), Postives = 803/1397 (57.48%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIY--DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKY--------ALXXXXXXXXXXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPDATCIR----------------SVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDYTY-NEPALD-NEI----QYILKE---------FLDSHERKFENLDENLVKTLSDY----YNSTEGLVF----GITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNV--IIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIG----KVQIMGVKNVKRTVIQRNEQN---RHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSD 4047
            K +  I FG+ S E++ QQ+H++V + ++Y  DN   P   G++D RMGT    + C TC +    C+GH+GYIDL    F  G+ + ++ IL+ ICKTC HI+L++ +       L++P LTY+QK+ ++  I  K  K   C  C   NG+VKK   L +I H+KY         +     + FE    +++E++ LL      L P  V  LF+ IP +    L M N +  K S+LI   + VPP+CIRPS  +  ++ + EDD+T+ L   I  N   K H +     +MI  D   ++                ++  KK  RG +QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L+I+E+++P + A  LTF E     NI  L+KL+ NG   +PGA            QQ  +Q+K  +       K  N   R + A++LK GD V+RH+   D+VLFNRQPSLH+LS  A    VK  +TF FN C C P+NADFDGDEMN+H PQT EAKAEA+ L+ +  N  +P +GEPL A +QD LT AYLLT KDTF++  +   +I  I+        V +P P I+KPV L++GKQ+ S+++ P      D   V  + R     +      + L  ND+ V I NS+L+ G + K  LG GSK +IF+ +L+D G   +  +M RL ++A   L +RGFS+GI DV+P   L   + EL+   +  C+E+I+    G L   PGC+ EETLE+ I  +LS IRD  G  C   L K NSPL MA+CGSKGS+INISQM+ CVGQQ I G RV +    NR+L ++ ++ + P +KGFV+NSFYSGL P EF FH M+GREGL+DTAVKTAETGYMQRRL+K LEDL  ++D TVR  TG+++QF YG DG DP+ +E    P +F + L +    +   +EPAL  NE+    + I+K+         FL   ++  + + E + KT   Y      +TE  V      IT +Q++ F++ C  KY +A +EPG+A+G +C QS+GEP TQMTLKTFHFAGVASMNIT GVPR++EI+NA   I TPIIT  L  D    +A+ ++ +I+   L  +   I+   L     +   L L  +++ +L +  E V  ++ + K++     V       V +      K +   VL+ +     KV + G+  V R VI  +EQ+   ++ + VEG  L  +    GV G  T SN+  E+ + LGI+AA+  IINE+   M  H ++ D RHVMLL+D+M Y G++ G  R G++K K SVL LASFEKT DHL +AAY  QKD + G+S+ +  G    IGTG+  ++     + +  +RP + D
Sbjct:   13 KKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKCGLLKII-HEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLM-NPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFI---------QQRHTQMKRFL-------KYGN---REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRP-----SDDNPVRANLRTKG--KQYCGKGEDLCANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD-GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPNPPKRPLIFD 1380

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Match: POLR2A (RNA polymerase II subunit A [Source:HGNC Symbol;Acc:HGNC:9187])

HSP 1 Score: 387.111 bits (993), Expect = 1.939e-110
Identity = 272/793 (34.30%), Postives = 421/793 (53.09%), Query Frame = 1

Query:  625 LLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSA--QTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPD--------ATCI--------RSV-KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITD-VSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE----STYCPCD--FTKELYHALQDYTYNEPALDNEIQY-ILKEFL-DSH-----ERKFENLDEN 2895
            LL P  V ++F+ I  +    LGM   +  +   +I   +PVPP+ +RP+   Q S+ N   +DD+T  L   +  N   + ++ +   A +I  D        AT +        R++ K  + ++ + QRL GK+GR RGN+MGKR +F++RTVI+PDP+L I+++ +P   A  +TF E  T +NI  L++L+  G  +YPGA                 +  +  N +    ++D       +   L+ G  V+RH+   DIV+FNRQP+LH++S     + +    TF  N     P+NADFDGDEMN+H PQ+ E +AE  EL    +   +P S  P+   +QD LTA    T +D F    E  NL++ +           +P+P I+KP  L++GKQ+ SL+I P       +    PD       +  S P  +++P DT VV+ N +LIMG L KK LG  +   +    L+   D+        +  +    L   G ++GI D ++ S   + IQ  + +    + E  I+   N  L   PG ++ +T E++++  L+  RD+ G   + +L + N+   M + G+KGS INISQ++  VGQQ +EGKR+      +RTL ++ ++   P S+GFV NS+ +GL P EF FHAM GREGLIDTAVKTAETGY+QRRLIK +E + +++D TVR+    +VQ +YG DG     +E    +T  P +  F K+      DYT NE AL   +Q  ++K+ L ++H     ER+FE + E+
Sbjct:  215 LLSPERVHEIFKRISDEECFVLGME-PRYARPEWMIVTVLPVPPLSVRPAVVMQGSARN---QDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGA-----------------KYIIRDNGD----RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWD-----GKVPQPAILKPRPLWTGKQIFSLII-PGHINCIRTHSTHPD-------DEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRL-FYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIE-VIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP-FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRF---DYT-NERALRRTLQEDLVKDVLSNAHIQNELEREFERMRED 962

HSP 2 Score: 90.8929 bits (224), Expect = 1.730e-17
Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = 1

Query: 3586 VEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
             +G  L+ +   + VD + T SN I+EI+ VLGI+A +  +  EL  V+       + RH+ LL D M   G +    R G+++     L   SFE+T+D L+EAA H + D + G+S+++  G+  P GTG
Sbjct: 1338 TDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTG 1469

HSP 3 Score: 86.6557 bits (213), Expect = 2.804e-16
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 1

Query: 2944 FGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYL 3201
            F ++       +     K+ +AI  PG  +G +  QS+GEPATQMTL TFH+AGV++ N+T GVPR++E++N     KTP +TV+L
Sbjct: 1058 FRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFL 1143

HSP 4 Score: 68.5514 bits (166), Expect = 9.718e-11
Identity = 40/132 (30.30%), Postives = 68/132 (51.52%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDI----YDNLAKPAENGLMDQRMGTCSST-KCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEH-----DVMSHEKELRKPNLTYI 408
            + +  ++FG+ S +++ + S   VT   I         +P   GLMD R G    T +C TC      C GHFG+I+L+  +F  GFL   +K+L+C+C  C  +L++ +     D+++  K   K  LT++
Sbjct:   16 RTIKRVQFGVLSPDELKRMS---VTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHV 144

[Close]

Query:  625 LLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSA--QTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPD--------ATCI--------RSV-KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITD-VSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE----STYCPCD--FTKELYHALQDYTYNEPALDNEIQY-ILKEFL-DSH-----ERKFENLDEN 2895
            LL P  V ++F+ I  +    LGM   +  +   +I   +PVPP+ +RP+   Q S+ N   +DD+T  L   +  N   + ++ +   A +I  D        AT +        R++ K  + ++ + QRL GK+GR RGN+MGKR +F++RTVI+PDP+L I+++ +P   A  +TF E  T +NI  L++L+  G  +YPGA                 +  +  N +    ++D       +   L+ G  V+RH+   DIV+FNRQP+LH++S     + +    TF  N     P+NADFDGDEMN+H PQ+ E +AE  EL    +   +P S  P+   +QD LTA    T +D F    E  NL++ +           +P+P I+KP  L++GKQ+ SL+I P       +    PD       +  S P  +++P DT VV+ N +LIMG L KK LG  +   +    L+   D+        +  +    L   G ++GI D ++ S   + IQ  + +    + E  I+   N  L   PG ++ +T E++++  L+  RD+ G   + +L + N+   M + G+KGS INISQ++  VGQQ +EGKR+      +RTL ++ ++   P S+GFV NS+ +GL P EF FHAM GREGLIDTAVKTAETGY+QRRLIK +E + +++D TVR+    +VQ +YG DG     +E    +T  P +  F K+      DYT NE AL   +Q  ++K+ L ++H     ER+FE + E+
Sbjct:  215 LLSPERVHEIFKRISDEECFVLGME-PRYARPEWMIVTVLPVPPLSVRPAVVMQGSARN---QDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGA-----------------KYIIRDNGD----RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWD-----GKVPQPAILKPRPLWTGKQIFSLII-PGHINCIRTHSTHPD-------DEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRL-FYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIE-VIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP-FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRF---DYT-NERALRRTLQEDLVKDVLSNAHIQNELEREFERMRED 962

HSP 2 Score: 90.8929 bits (224), Expect = 1.730e-17
Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = 1

Query: 3586 VEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
             +G  L+ +   + VD + T SN I+EI+ VLGI+A +  +  EL  V+       + RH+ LL D M   G +    R G+++     L   SFE+T+D L+EAA H + D + G+S+++  G+  P GTG
Sbjct: 1338 TDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTG 1469

HSP 3 Score: 86.6557 bits (213), Expect = 2.804e-16
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 1

Query: 2944 FGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYL 3201
            F ++       +     K+ +AI  PG  +G +  QS+GEPATQMTL TFH+AGV++ N+T GVPR++E++N     KTP +TV+L
Sbjct: 1058 FRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFL 1143

HSP 4 Score: 68.5514 bits (166), Expect = 9.718e-11
Identity = 40/132 (30.30%), Postives = 68/132 (51.52%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDI----YDNLAKPAENGLMDQRMGTCSST-KCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEH-----DVMSHEKELRKPNLTYI 408
            + +  ++FG+ S +++ + S   VT   I         +P   GLMD R G    T +C TC      C GHFG+I+L+  +F  GFL   +K+L+C+C  C  +L++ +     D+++  K   K  LT++
Sbjct:   16 RTIKRVQFGVLSPDELKRMS---VTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHV 144

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Match: POLR1A (RNA polymerase I subunit A [Source:HGNC Symbol;Acc:HGNC:17264])

HSP 1 Score: 278.485 bits (711), Expect = 2.085e-75
Identity = 196/640 (30.63%), Postives = 326/640 (50.94%), Query Frame = 1

Query:  940 GMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNI-VVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKI--VMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRI------------NQIVETSSNPVDYLNPN---DTLVVIHNSKLIMGQLPXXXXXXXXXXXIF--FRILKDVGDLASCQSMERLCQIALADLK-SRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIK----------YYENGSLISDPGCSIEE----TLESKISSQLSKIRDEGGKECKT-TLHKR---NSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE 2742
            G+ Q L  K+G FR ++MGKR ++ +R+VI PD  +  NEI IP   A KLT+ +  T +N+  L++ ++NG   +PGA    S +I+++  +       M   E +  +L         A K +    V RH+ + DI+L NRQP+LHR S QA    ++ +EK    +   C  +NADFDGDEMN HFPQ+   +AEA  L  + +    P  G+PL   +QD + +   +T++  F+  + +  L+   +     +K+  V +  P I+KP  L++GKQ++S ++            +IP+  I               V+ +   V   NP+   ++ V+I   +L+ G L K   G  +   +   + I    G   S + +  L ++  A L+  RGF+LG+ D+    K    ++ ++E++     + ++          Y E      D     ++     ++ K   +++   +E  K C    LH++   NS  +M   G+KGS +N  Q+   +GQ  +EG+R   +  + ++L  +     +P + GFV+  F +G+ P EF FH M+GREGL+DTAVKT+ +GY+QR +IK LE L +++D TVRD  G++VQF YG DG D  K +
Sbjct:  416 GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGA----SMVINEDGSRTALSAVDMTQREAVAKQLLTPA---TGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLT----DKVGRVKLLSPSILKPFPLWTGKQVVSTLLI----------NIIPEDHIPLNLSGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEI---YGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRR-PPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQ 1030

HSP 2 Score: 90.5077 bits (223), Expect = 2.038e-17
Identity = 42/87 (48.28%), Postives = 64/87 (73.56%), Query Frame = 1

Query: 2995 KYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEI-MNAVANIKTPIITVYLTDDVRESFAKTMQLKIQ 3252
            K+ +++ EPG A+G++  QS+GEP+TQMTL TFHFAG   MN+T G+PR++EI M A ANIKTP+++V +  + +++  +   LK Q
Sbjct: 1199 KWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQ 1284

HSP 3 Score: 67.3958 bits (163), Expect = 2.283e-10
Identity = 50/161 (31.06%), Postives = 75/161 (46.58%), Query Frame = 1

Query: 3517 IMGVKNVKRTVIQRNEQNRHN----IYVEGGKLLDLFQ-IEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGM 3984
            I   K + R ++     N++     +  EG  L +LF+  E +D    +SN I  I    GI+AA  +I  E+  V   + +  D RH+ L+AD MC+ G      R GI +S +S L   +FE +   L +A      D+L   S  L  GK    GTG+
Sbjct: 1492 IYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGL 1651

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Match: POLR1A (RNA polymerase I subunit A [Source:HGNC Symbol;Acc:HGNC:17264])

HSP 1 Score: 278.1 bits (710), Expect = 2.977e-75
Identity = 196/640 (30.63%), Postives = 326/640 (50.94%), Query Frame = 1

Query:  940 GMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNI-VVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKI--VMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRI------------NQIVETSSNPVDYLNPN---DTLVVIHNSKLIMGQLPXXXXXXXXXXXIF--FRILKDVGDLASCQSMERLCQIALADLK-SRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIK----------YYENGSLISDPGCSIEE----TLESKISSQLSKIRDEGGKECKT-TLHKR---NSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE 2742
            G+ Q L  K+G FR ++MGKR ++ +R+VI PD  +  NEI IP   A KLT+ +  T +N+  L++ ++NG   +PGA    S +I+++  +       M   E +  +L         A K +    V RH+ + DI+L NRQP+LHR S QA    ++ +EK    +   C  +NADFDGDEMN HFPQ+   +AEA  L  + +    P  G+PL   +QD + +   +T++  F+  + +  L+   +     +K+  V +  P I+KP  L++GKQ++S ++            +IP+  I               V+ +   V   NP+   ++ V+I   +L+ G L K   G  +   +   + I    G   S + +  L ++  A L+  RGF+LG+ D+    K    ++ ++E++     + ++          Y E      D     ++     ++ K   +++   +E  K C    LH++   NS  +M   G+KGS +N  Q+   +GQ  +EG+R   +  + ++L  +     +P + GFV+  F +G+ P EF FH M+GREGL+DTAVKT+ +GY+QR +IK LE L +++D TVRD  G++VQF YG DG D  K +
Sbjct:  416 GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGA----SMVINEDGSRTALSAVDMTQREAVAKQLLTPA---TGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLT----DKVGRVKLLSPSILKPFPLWTGKQVVSTLLI----------NIIPEDHIPLNLSGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEI---YGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRR-PPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQ 1030

HSP 2 Score: 90.5077 bits (223), Expect = 2.095e-17
Identity = 42/87 (48.28%), Postives = 64/87 (73.56%), Query Frame = 1

Query: 2995 KYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEI-MNAVANIKTPIITVYLTDDVRESFAKTMQLKIQ 3252
            K+ +++ EPG A+G++  QS+GEP+TQMTL TFHFAG   MN+T G+PR++EI M A ANIKTP+++V +  + +++  +   LK Q
Sbjct: 1199 KWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQ 1284

HSP 3 Score: 67.3958 bits (163), Expect = 2.339e-10
Identity = 50/161 (31.06%), Postives = 75/161 (46.58%), Query Frame = 1

Query: 3517 IMGVKNVKRTVIQRNEQNRHN----IYVEGGKLLDLFQ-IEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGM 3984
            I   K + R ++     N++     +  EG  L +LF+  E +D    +SN I  I    GI+AA  +I  E+  V   + +  D RH+ L+AD MC+ G      R GI +S +S L   +FE +   L +A      D+L   S  L  GK    GTG+
Sbjct: 1553 IYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGL 1712

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Match: rpc-1 (DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q18566])

HSP 1 Score: 892.878 bits (2306), Expect = 0.000e+0
Identity = 537/1401 (38.33%), Postives = 786/1401 (56.10%), Query Frame = 1

Query:   40 DKA--VCAIEFGINSIEDIVQQSHVKVTNHDIYDNLA---KPAENGLMDQRMGTCSST-KCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLN--EHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKYALXXXXXXXXXXXXNYSQEIKNLLNS-GVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDNKLHDMHSEYARMIKPDATCIRS----------------------VKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKI-VMIPRPMIMKPVKLYSGKQLMSLVISP-YGTLSPDSKRVIPDSRINQIVETSSNPVDY-LNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLEST-YCPCDFTKELYHALQDYTYNE-PALDNEIQYILKEFLDSHERKFENLDENLVKTLSDYYNSTE---------------------------------------GLVFG--ITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVIIQSQLLACSTGMFFYLHLNN--VKMNQLAILPEDVEKALKSVKI--QNNAVRVVYKETGRVYIEVFSEKKINCQKVLKV----IGKVQIMGVKNVKRTVIQRNEQ--NRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
            DKA  V  ++F     E + Q +HV + N+ +Y+++    +PA  G +D +MG  + T  C TC      C+GHFGY DL   +F  GF K  +++L+CICK C  ILL   +H V S  +++  PNL Y+ +K++   I+    K   C  C   NG+VKK     +       +   +   F    + +QE+ + +     TLL P  V KLF  I       L + + +    ++L+   +PVPP+CIRPS  +  +  + EDD+T+ L   +  N   D+  ++ R   P  T   +                      ++ K+ +R   QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L+I+++ +P + AM LTF E   A NI  +++L++NG+  +PGA                     ++  +    KL     R E A+ L++GD ++RH+D  D+VLFNRQPSLH++S  +    V   +TF FN C C P+NADFDGDEMN+H PQT+EAKAEA EL++   N  +P SGEPL A +QD +T  YLLT KDTF    E       ++      +  + IP P I +PV+L++GKQL+ L+I P  G+          D  +N   +  S   +  L   D+ V+I NS L+ G L K LLG  SK++IF+ +++D G+ A+  +M RL ++A   L +RGFS+GI DV PS +L   + +LV+  ++ C ++IK  E G L + PGC+ EETLES I  +LS IRD  G+ C   L K N+PL MA+CGSKGS+INISQM+ CVGQQ I G R  +     R+L ++    ++P +KGFV+NSFYSGL P EF FH M GREGL+DTAVKTAETGYMQRRL+K LEDL   +D TVR   G++++F +G DG DP+ +E+      DFT  L HA    T  E P   +++  +LK  +   ++KF+    +    LS+Y   TE                                        L+    +T++Q+  FI+ CY K  +AI EPGTA+G I   S+GEP+TQMTLKTFHFAGVASMNIT+GVPR++EI+NAV  I TPIIT  L D   ES A+ ++ +I+   L  +    + +      F  + LN+  +++ QL +  E +  A+ + K+  Q    ++V      + I   S  K++    +++    +  V + G+ +V R VI  +E+  + +++ VEG     +    GVD   T+ N+ L + +VLGI+AA+  IINE+ A M AH +  D RHVMLLAD+M Y G++ G  R+G+ K K+SVL LASFEKT+DHL EAA+ +Q+D +HG+S+ +  G    +GTG
Sbjct:   10 DKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVSTKTGTCSTCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFS--RQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTN---DVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGA-------------------NYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKIRIPPPAIRRPVELWTGKQLIELIIRPDKGS----------DVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPD-GFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEI---QKKFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAIRPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTG 1372

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Match: ama-1 (DNA-directed RNA polymerase II subunit RPB1 [Source:UniProtKB/Swiss-Prot;Acc:P16356])

HSP 1 Score: 431.795 bits (1109), Expect = 3.386e-126
Identity = 303/953 (31.79%), Postives = 480/953 (50.37%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIYDNLAKPAENGLMDQRMGTCSST-KCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLS------MICHKKYA--LXXXXXXXXXXXXNYSQEIKNLLNSGVT----LLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQT--SSENTSREDDITILLRMQIGDNK---LHDMHSEYARMIKPDA------------TCIRSV-----KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAAR-KLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIAL-----------ADLKSRGFSLGITD-VSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCP 2757
            + V  ++FGI   E+I + S   V   ++Y+N  KP   GLMD R G      +C+TC      C GHFG+++L+  +F  GFL   +KIL+C+C  CG +L+++            P +  I KK+      + +     C+  +   G+ +K + +       M   KK A      Q  +     + + E K  +N        +L    V ++FQ I  +    +GM + +  +   +I   +PVPP+ +RP+  T  S++N   +DD+T  L   I  N+    ++ +   A ++  D              CI  +     K  + ++ + QRL GK+GR RGN+MGKR +F++RTVI+ DP+L I+ + +P   A  LTF E  T +N+  L++L+  G  +YPGA                   K ++        L   ++   AA   L+ G  V+RH+   DI++FNRQP+LH++S     + +    TF  N    +P+NADFDGDEMN+H PQ+ E +AE  E+    +   +P + +P+   +QD L A  ++T +D F +     +L++ +     P     +P+P I+KP  L++GKQ+ SL+I P       +    PDS         S P  +++P DT V+I + +L+ G +  K             + K  G+L    ++E   +IA            A L   G ++GI D ++  A    IQ  + +    + +  I+   N  L   PG ++ +T E+K++  L+  RD  G   + +L + N+   M + GSKGS INISQ++ CVGQQ +EGKR+      +RTL ++ ++   P SKGFV NS+ +GL P EF FHAM GREGLIDTAVKTAETGY+QRRLIK +E + + +D TVR+    +VQ +YG DG D   +E+   P
Sbjct:   13 RIVSRVQFGILGPEEIKRMSVAHVEFPEVYEN-GKPKLGGLMDPRQGVIDRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKS----------APRVLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRYQPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGM-DPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKN---QDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-------------------KYIIRENGARVDL---RYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYL-----PTWDGKVPQPAILKPKPLWTGKQVFSLII-PGNVNVLRTHSTHPDSE-------DSGPYKWISPGDTKVIIEHGELLSGIVCSKT------------VGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVD-VIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIP-FGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMP 901

HSP 2 Score: 92.4337 bits (228), Expect = 1.782e-18
Identity = 46/110 (41.82%), Postives = 71/110 (64.55%), Query Frame = 1

Query: 2995 KYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESF--AKTMQLKIQPVFLKNVIIQSQLLACSTGMFF 3318
            ++ +AI +PG  +G +  QS+GEPATQMTL TFH+AGV++ N+T GVPR++EI+N    +KTP +TV+LT    +    AK +  K++   LK V        C+T +++
Sbjct: 1069 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKV-------TCNTAIYY 1171

HSP 3 Score: 92.4337 bits (228), Expect = 1.989e-18
Identity = 47/139 (33.81%), Postives = 78/139 (56.12%), Query Frame = 1

Query: 3586 VEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFN 4002
             +G  LL +     +D + T SN I EI+EVLGI+A +  I  E++ V+       + RH+ LL D+M   G +    R GI++ +   L   SFE+T+D L+EAA H ++D + G+S+++  G+    GTG   ++ +
Sbjct: 1330 TDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLD 1468

[Close]

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIYDNLAKPAENGLMDQRMGTCSST-KCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLS------MICHKKYA--LXXXXXXXXXXXXNYSQEIKNLLNSGVT----LLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQT--SSENTSREDDITILLRMQIGDNK---LHDMHSEYARMIKPDA------------TCIRSV-----KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAAR-KLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIAL-----------ADLKSRGFSLGITD-VSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCP 2757
            + V  ++FGI   E+I + S   V   ++Y+N  KP   GLMD R G      +C+TC      C GHFG+++L+  +F  GFL   +KIL+C+C  CG +L+++            P +  I KK+      + +     C+  +   G+ +K + +       M   KK A      Q  +     + + E K  +N        +L    V ++FQ I  +    +GM + +  +   +I   +PVPP+ +RP+  T  S++N   +DD+T  L   I  N+    ++ +   A ++  D              CI  +     K  + ++ + QRL GK+GR RGN+MGKR +F++RTVI+ DP+L I+ + +P   A  LTF E  T +N+  L++L+  G  +YPGA                   K ++        L   ++   AA   L+ G  V+RH+   DI++FNRQP+LH++S     + +    TF  N    +P+NADFDGDEMN+H PQ+ E +AE  E+    +   +P + +P+   +QD L A  ++T +D F +     +L++ +     P     +P+P I+KP  L++GKQ+ SL+I P       +    PDS         S P  +++P DT V+I + +L+ G +  K             + K  G+L    ++E   +IA            A L   G ++GI D ++  A    IQ  + +    + +  I+   N  L   PG ++ +T E+K++  L+  RD  G   + +L + N+   M + GSKGS INISQ++ CVGQQ +EGKR+      +RTL ++ ++   P SKGFV NS+ +GL P EF FHAM GREGLIDTAVKTAETGY+QRRLIK +E + + +D TVR+    +VQ +YG DG D   +E+   P
Sbjct:   13 RIVSRVQFGILGPEEIKRMSVAHVEFPEVYEN-GKPKLGGLMDPRQGVIDRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKS----------APRVLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRYQPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGM-DPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKN---QDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-------------------KYIIRENGARVDL---RYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYL-----PTWDGKVPQPAILKPKPLWTGKQVFSLII-PGNVNVLRTHSTHPDSE-------DSGPYKWISPGDTKVIIEHGELLSGIVCSKT------------VGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVD-VIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIP-FGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMP 901

HSP 2 Score: 92.4337 bits (228), Expect = 1.782e-18
Identity = 46/110 (41.82%), Postives = 71/110 (64.55%), Query Frame = 1

Query: 2995 KYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESF--AKTMQLKIQPVFLKNVIIQSQLLACSTGMFF 3318
            ++ +AI +PG  +G +  QS+GEPATQMTL TFH+AGV++ N+T GVPR++EI+N    +KTP +TV+LT    +    AK +  K++   LK V        C+T +++
Sbjct: 1069 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKV-------TCNTAIYY 1171

HSP 3 Score: 92.4337 bits (228), Expect = 1.989e-18
Identity = 47/139 (33.81%), Postives = 78/139 (56.12%), Query Frame = 1

Query: 3586 VEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFN 4002
             +G  LL +     +D + T SN I EI+EVLGI+A +  I  E++ V+       + RH+ LL D+M   G +    R GI++ +   L   SFE+T+D L+EAA H ++D + G+S+++  G+    GTG   ++ +
Sbjct: 1330 TDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLD 1468

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Match: rpoa-1 (DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:G5EDG7])

HSP 1 Score: 297.745 bits (761), Expect = 7.195e-82
Identity = 208/639 (32.55%), Postives = 331/639 (51.80%), Query Frame = 1

Query:  922 DKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDF--------VQRHIDSTDIVLFNRQPSLHRLSFQAFNI-VVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVIS---PYGT--LSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDV-----------SPSAKLRTIQKELVEQNFAICEEF----IKYYENGSLISDPGCSIE-ETLESKISSQLSKIRDEGGKECKTT----LHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSK 2736
            D+  I G+ Q L  K+G FR ++MGKR NF  R+VI+PDP L I+EI IP+  A KLTFTE   A+N+  +K L+  G  ++PGA  +       EP    S  K M+       K + +K R++ A+ L             V RH+ + D+++ NRQPSLH+ S       V+  ++    N   C  +NADFDGDEMN H  Q+  A+ E  E+ +   N   P    PL   +QD + +  LL+ +D F N+++F +L+L        +K + IP P I+ P +L++GKQ+++ ++    P G   ++ D K   P S    IV     P    + +++ VV    +L++G L  K   G ++  +     +  G     Q +    ++    L+  GF+LG+ D+               + RTI  ++V+  F + +      IK     +  +  G   + + L+  +   ++K  D   K C  T    L  +N+  +M   G+KGS +N  Q+  C+GQ  +EGKR++ ++   RTL  +     SP + G++   F +G+NP E  FH M+GREGLIDTAVKT+ +GY+QR +IK LE + + +D+TVRD  G+++QF+YG DG D +K
Sbjct:  449 DRDSIAGIKQILEKKQGLFRMHMMGKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPHQHPGANFFV------EP----SGKKTMLGD-----KPEEKKRRMQMAKTLNAATTENLRQTPKVLRHMKNGDMIMMNRQPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKEDFMHLVL--ASFAQYSKRIEIPPPTILYPKRLWTGKQVITTIVKNCIPDGKPLINLDGKAKTPLS--CWIVPGFDAP--QFDMSESHVVFRQGELLVGVL-DKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTYLQFHGFTLGVADILVVKDADGKRKEAVMESRTIGNQVVKTAFGLPDTATPAEIKRTLAATYCNPRGQGTDVKMLDFGMKQGIAKYNDAITKSCVPTGLLRLFPQNALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMA-VTIAGRTLPSFRCFDPSPRAGGYIDQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDGSVIQFRYGEDGMDTTK 1064

HSP 2 Score: 83.5741 bits (205), Expect = 1.082e-15
Identity = 37/97 (38.14%), Postives = 62/97 (63.92%), Query Frame = 1

Query: 2989 YQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEI-MNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVI 3276
            Y K  +++ +PG  +G++  QS+GEP+TQMTL TFHFAG   MN+T G+PR++EI M A  +I TP  ++ +          +++ ++  V+LK ++
Sbjct: 1221 YWKGMRSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIATPSASIAVIAGTSRDRIDSIKRELDRVYLKQLL 1317

HSP 3 Score: 71.2478 bits (173), Expect = 5.019e-12
Identity = 50/164 (30.49%), Postives = 79/164 (48.17%), Query Frame = 1

Query: 3514 QIMGVKNVKRTVIQRNEQNRHNIYVEGGKLLDLFQIEGVDGINT-HSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFN 4002
            Q  G++    T  Q+N +    +  +G  L   F+   V  +N+ +SN +  I E  G++A    I  E+N V   + +    RH+ L AD M +TGQI  F R  +S S +S L   +FE T+  L EA  H ++D ++  S  L  G     GTG   ++ +
Sbjct: 1551 QTPGIERCVETTEQKNGKEMTILQTQGVNLAAFFKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMS-SSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDLLLD 1713

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Match: rpoa-1 (DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:G5EDG7])

HSP 1 Score: 55.4546 bits (132), Expect = 6.828e-9
Identity = 33/89 (37.08%), Postives = 46/89 (51.69%), Query Frame = 1

Query: 3715 ELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
            E+N V   + +    RH+ L AD M +TGQI  F R  +S S +S L   +FE T+  L EA  H ++D ++  S  L  G     GTG
Sbjct:    2 EMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMS-SSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTG 89

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Fly
Match: RpIIIC160 (gene:FBgn0030687 transcript:FBtr0300811)

HSP 1 Score: 859.751 bits (2220), Expect = 0.000e+0
Identity = 516/1381 (37.36%), Postives = 768/1381 (55.61%), Query Frame = 1

Query:   13 KSLVRPGTEDKAVCAIEFGINSIEDIVQQSHVKVTNHDIYDNLAKPAENGLMDQRMG-TCSSTKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKY------ALXXXXXXXXXXXXNYSQEIKNLLNSGVTL--LRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDIT-----------ILLRMQIGDNKLHDMHSEYARMIKPDATCIRS--------VKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDY-LNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQ-------DYTYNEPALDNEIQYILK--EFLDSHE------RKFENLDENLVKTLSDYYNSTEGLVFGI---TRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVIIQSQLLACSTGMFFYLHLNNVKMNQLAI---LPEDVEKALKS-VKIQNNAVRVVYKETG-RVYIEVFSEKKINCQ--KVLKVIGKVQIMGVKNVKRTVIQRNEQNRHNIY---VEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGM 3984
            K   R    +K +  ++FGI+  ++I Q++ V++ + ++Y    +P   G++D+RMG +     C TC +    C+GHFGY+DL+  +F  G  +  + IL+ ICK C H++L   D   +EK+L  PN +Y+ KK++   ++ K+ K+ +C  C   NG VKK   L  I H  Y      +L         +    ++++ + L +  T   L P  V  LF+ IP +    LGM +  +    +LI   + VPP CIRPS  +  +  + EDD+T           ++ R      K+  +H ++  +    A    S        +  KK  RG++QRL GK+GRFR N+ GKR +F+ RTVISPDP+L IN++ +P   A  LT+ E     NI H+++L+ NG   +PGA            QQ  S  K        +    N   R + A++LK GD V+RH+   DIVLFNRQPSLH++S       V+ ++TF FN C C P+NADFDGDEMN+H PQT EA+AEA+ L+ +  N  +P +GE L A  QD +T  YLLT K+ F  ++E   L    +        + +P P ++KP +L++GKQ+ SL++ P      D  +V    R+N + +  +   +  L  ND+ + I NS+L+ G + K  +G G+K  IF+ +L+D G+  + ++M RL +IA   L++RGFS GI+DV+PS KL   ++ L+   +A C E+I+  + G+L   PGC+ EETLES +  +LS IR++  K C   LH  NS LIMA+ GSKGS INISQM+ CVGQQ I GKRV N    NR L ++  +   P ++GFV NSFYSGL P EF FH M+GREGL+DTAVKTAETGY+QRRL+K LEDL + +D TVR+    +V   YG DG DP  +E+   P D   + Y  L+       D   N   +   ++ +L+  EF ++ +      R   N     +  L   Y     L   I   T  Q+  F+     +Y +A+ EPGTA+G I  QS+GEP TQMTLKTFHFAGVASMNIT+GVPR+ EI+NA   I TPIIT  L +     FA+ ++ +I+   L  +    +++      +  + ++  ++  L +   L   V   LKS ++++   V VV  ++   V +E      IN +  ++   +  V + G+ N+ R VI  ++  +   Y   +EG  L D+    GV G  T SN+I EIY+ LGI+AA+ +I++E+  VM  H ++ D RH+MLLA  M   G++ G  R G++K + SV  LASFEKT DHL +AAY+ Q D ++G+S+ +  G    IGTG+
Sbjct:    3 KEQFRASALNKKISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGISTKDAMCETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQLYEKKLHNPNFSYLGKKALHVQMLAKAKKVTKCPHCGSPNGGVKKGPGLLKILHDPYKGRKMDSLFTSNMNEMLRSTQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSH-DAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGA---------NYVQQRGSSFK-------KYLAYGN---REKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPN-----DDSQV----RLNMVNKGRNYTRNKDLCSNDSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSFGISDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPN-GFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSMETRNKPVDLVHQ-YDNLRAQHPQGKDRPLNAEEMSEALETLLRTPEFAEARDDFKLDVRNHINTVSKRIGQLQKRYEKCIDLCHQIECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKARIEKTTLAELSSYVEVVCGPYSCYLAIGVDMARIKLLGLHIDLDTIVFSILKSRMRVKPTQVEVVASQSRIVVRVEATRTSTINAELARLALSLQNVVVAGLPNINRAVIAVDDARQPPTYKLCIEGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTGI 1352

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Fly
Match: RpII215 (gene:FBgn0003277 transcript:FBtr0073542)

HSP 1 Score: 382.489 bits (981), Expect = 3.106e-109
Identity = 243/713 (34.08%), Postives = 385/713 (54.00%), Query Frame = 1

Query:  643 VFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDNKL--HDMHSEYARMIKPD--------ATCI--------RSV-KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGF 2724
            V+++ + I  +    LGM + K  +   +I   +PVPP+ +RP+        +++D    L  +   +N+L  ++     A +I+ +        AT +        R++ K  K ++ +  RL GK+GR RGN+MGKR +F++RTVI+PDP+L+I+++ +P   A  LTF E  T +NI  +++L+  G  +YPGA                 +  +  N E    ++D       +   L+ G  V+RH+   D+V+FNRQP+LH++S     + V    TF  N  C +P+NADFDGDEMN+H PQ+ E +AE   +  + +   +P + +P+   +QD LTA   +T +D F   ++  NL++ +     P     +P+P I+KP  L++GKQ+ SL+I P       +    PD       E    P  +++P DT V++ + +LIMG L KK LG  +   +    L+   D+A  +    +  +    L   G S+GI D     +     ++ +++        I+   N  L   PG ++ +T E+K++  L+  RD+ G   K +L + N+   M + GSKGS INISQ++ CVGQQ +EGKR+       RTL ++ ++   P S+GFV NS+ +GL P EF FHAM GREGLIDTAVKTAETGY+QRRLIK +E + + +D TVR+  G L+Q +YG DG 
Sbjct:  213 VWEILKHITDEECFILGM-DPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGA-----------------KYIVRDNGE----RIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFL-----PTWDAKMPQPCILKPRPLWTGKQIFSLII-PGNVNMIRTHSTHPD-------EEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAG-RFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIP-YGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGL 888

HSP 2 Score: 98.9821 bits (245), Expect = 2.375e-20
Identity = 55/169 (32.54%), Postives = 91/169 (53.85%), Query Frame = 1

Query: 3493 LKVIGKV--QIMGVKNVKRTVIQRNEQ----NRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
            ++ IGKV   +    + KR VI    +        +  +G  ++ +     VD I T SN I EI++VLGI+A +  +  E+NAV+  + L  + RH+ LL D+M   G +    R GI++     L   SFE+T+D L++AA H + D + G+S+++  G+   +GTG
Sbjct: 1293 IEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTG 1461

HSP 3 Score: 87.4261 bits (215), Expect = 7.745e-17
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = 1

Query: 2905 TLSDYYNSTEGLVFGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLT 3204
            TL   Y S E   F ++    +  +     ++ +A   PG  +G +  QS+GEPATQMTL TFHFAGV+S N+T GVPR++EI+N     K P +TV+LT
Sbjct: 1040 TLCTKYVSEE---FRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLT 1136

HSP 4 Score: 72.4034 bits (176), Expect = 2.905e-12
Identity = 44/131 (33.59%), Postives = 67/131 (51.15%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIYDNL--AKPAENGLMDQRMGTCSST-KCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHD------VMSHEKELRKPNLTYI 408
            + V  ++FGI S ++I + S V        + +   +P   GLMD R G    T +C TC      C GHFG+IDL+  +F  GF+   +KIL+C+C  C  +L++ H+      VM    + RK  L Y+
Sbjct:   12 RQVKRVQFGILSPDEIRRMS-VTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSRGQPRK-RLAYV 140

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Fly
Match: RpI1 (gene:FBgn0019938 transcript:FBtr0087511)

HSP 1 Score: 286.189 bits (731), Expect = 3.650e-78
Identity = 215/688 (31.25%), Postives = 345/688 (50.15%), Query Frame = 1

Query:  766 RPSAQTSSENTSREDDITILLRMQIGDNKLHDMHSEYARMIKPDATCIRSVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGA--VAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNI-VVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVI-----SPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNP-----NDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGI-----TDVSPSAKLRTIQKELVEQNFAIC-----------EEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECK----TTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVS-NISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFD 2727
            + + QT    T+ E   T  L +Q+  + L D++                 ++ K   G+ Q +  K G  R ++MGKR N+ +RTVI+PDP++ ++EI IP+  A KL++    T +N+  L+K+++NG   +PGA  +   +G  +  P    S+        +    L N K  I+          V RH+ + D++L NRQPSLH+ S       ++  EKTF  +   C  +NADFDGDEMN H+PQ+  A+AEA  L++   N   P  G PL   +QD + +   L+ +  F+N ++++ L+   +     + I ++P P I+KP  L+SGKQ++S +I       Y  ++ DS   I     N  V     P+   NP     +++ V I N +L++G L K+  G  +   I        GD+++   +    ++    L+  GF+LG+     TDV+   + + I++     N A+            +E ++  E  + + D    +   L+ K  S L    ++    C      T    N+  +M + G+KGS +N  Q+   +GQ  +EGKR    ISG  ++L  +     SP S GF+   F +G+ P +F FH M+GREGLIDTAVKT+ +GY+QR LIK LE L++ +D TVRD   ++VQF YG DG D
Sbjct:  355 KAAYQTLKGETAHEKLYTAWLALQMSVDVLLDVNMS---------------REMKSGEGLKQIIEKKSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDKNGFTTYIPADNASK-----RESLAKLLLSNPKDGIK---------IVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVFQGLSQLKKD-IKLLP-PTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFAKIAGKNWN--VSRPRPPICGTNPEGNDLSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVSTLL-LTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELEDEPPHDELVEKME-AAYVKDSKFRV--LLDRKYKSLLDGYTNDINSTCLPRGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISG--KSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLD 1003

HSP 2 Score: 85.1149 bits (209), Expect = 4.398e-16
Identity = 44/107 (41.12%), Postives = 70/107 (65.42%), Query Frame = 1

Query: 2995 KYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEI-MNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVIIQSQLLACSTGM 3312
            K  K++  PG  +G+I  QS+GEP+TQMTL TFHFAG   MN+T G+PR++EI M A +NIKTP + + +    ++  A+ +++ +  V L N++   + +  STG+
Sbjct: 1166 KTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPG-QQHQAEKLRINLNSVTLANLL---EYVHVSTGL 1268

HSP 3 Score: 73.559 bits (179), Expect = 1.563e-12
Identity = 50/165 (30.30%), Postives = 83/165 (50.30%), Query Frame = 1

Query: 3490 VLKVIGKVQIMGVKNVKRTVIQRNEQNRHNIYVEGGKLLDLFQIEGVDGINT-HSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
            + ++ GK  +  V+++KR +I +   +   +  +G  + ++FQ   +  +N  +SN I  I    GI+AA  +I+ E++ V   + +T D RH+ L+AD M + G      R G+  S +S L   SFE +L  L  AA   + D+L   S  L  G     GTG
Sbjct: 1470 IRELAGKSVVHQVQHIKRAIIYKGTDDDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEHS-SSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTG 1633

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Zebrafish
Match: polr3a (polymerase (RNA) III (DNA directed) polypeptide A [Source:ZFIN;Acc:ZDB-GENE-050208-103])

HSP 1 Score: 955.666 bits (2469), Expect = 0.000e+0
Identity = 570/1397 (40.80%), Postives = 810/1397 (57.98%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIY--DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKYALXXXXXXXXXX--------XXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPDATCIR----------------SVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDYT-YNEPALD-NEI----QYILKE---------FLDSHERKFENLDENLVKTLSDY----YNSTEGLVF----GITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNV--IIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIG----KVQIMGVKNVKRTVIQRNEQN---RHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSD 4047
            + +  I FG+ S E + QQ+H++V + ++Y  D   KP + G++D RMGT    + C TC +    C+GH+GY+DL    F  G+ K IV IL+ ICKTC HILL + + +     LR+P L Y+QK+ ++  I  K  K   C  CN  NGSVKK   L +I H+KY   ++                  +++E+++LL      L P  V  LF+ IP K    L M N ++ K ++LI   + VPP+CIRPS  +  ++ + EDD+T+ L   I  N   K H M     +MI  D   ++                ++  KK  RG +QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L+I+E+++P + A  LT+ E     NI  ++KL+ NG   +PGA            QQ   Q+K  +       K  N   R + A++LK GD V+RH+   DIVLFNRQPSLH+LS  A    VK  +TF FN C C P+NADFDGDEMN+H PQT EAKAEA+ L+ +  N  +P +GEPL A +QD LT AYLLT KDTF++  +   ++  I+        + +P P I+KP++L++GKQ+ SL++ P       SK     + +    +      + L  ND+ VVIHNS+L+ G + K  LG GSK +IF+ +L+D G   +  +M RL ++A   L +RGFS+GI DV+P   L   ++EL++  +  C+E+I   + G L   PGC+ EETLE+ I  +LS IRD  G  C   L K NSPLIMA+CGSKGS+INISQM+ CVGQQ I G RV +    NR+L ++ ++ + P +KGFV++SFYSGL P EF FH M+GREGL+DTAVKTAETGYMQRRL+K LEDL  ++D TVR  TG+++QF YG DG DP+ +E    P +F + L +    Y+   EPAL  NE+      I+K          FL+   +  + + E + KT   Y      +TE  V      IT +Q++ F++ C  KY +A +EPG+A+G +C QS+GEP TQMTLKTFHFAGVASMNIT GVPR++EI+NA  NI TPII+  L  +    FA+ ++ +I+   L  +   I+   L   T +   L L+ +++ +L +  E V  ++ + K++     V       V +      K +   VL+ +     KV + G+  V R VI  +EQ+   +  + VEG  +  +    GV+G  T SN+  E+ + LGI+AA+  IINE+   M  H ++ D RHVMLLAD+M Y G+I G  R G++K K SVL LASFEKT DHL +AAY  QKD + G+S+ +  G    IGTG+  ++   + E D  RRP L D
Sbjct:   13 RKISHICFGMKSSEQMRQQAHIQVVSKNLYSQDTSHKPLQYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYLDLELPCFHIGYFKAIVGILQMICKTCSHILLTKEEKLQFLDYLRRPGLAYLQKRGLKKKISDKCRKKTVCLNCNAFNGSVKKCGLLKII-HEKYKSTKKVVDPAVSDFLQSFDVAIEHNKEVESLLTRAQENLNPLVVLNLFRRIPDKDVPLLLM-NPESGKPADLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPGANFI---------QQRHMQMKRFL-------KYGN---REKMAQELKFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRTKACQIVASILVGKDEKIKISLPHPAILKPIRLWTGKQIFSLILKP-------SKSCPVMANLRTKGKQYCGKGEDLCANDSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQQEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKQELLDAGYEKCDEYIDALKTGRLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD-GFENRSLPHFQKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYSCTGEPALSRNELLLTSDSIMKRKDFLCCKDTFLEEIRKFIKTVSEKVKKTRDKYGINDNGTTEPKVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIISANLDTNDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDDTFILVKLSLDRIRLLRLEVNAETVRYSICTSKLRVKPGDVQVHGEAVVCVSPRENSKSSMYYVLQSLKQDLPKVVVQGIPEVSRAVIHIDEQSGKQKFKLLVEGDNMRSVMATHGVNGSKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHRSNREADPPRRPLLFD 1380

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Zebrafish
Match: polr2a (polymerase (RNA) II (DNA directed) polypeptide A [Source:ZFIN;Acc:ZDB-GENE-041008-78])

HSP 1 Score: 428.713 bits (1101), Expect = 1.457e-124
Identity = 321/1010 (31.78%), Postives = 506/1010 (50.10%), Query Frame = 1

Query:   58 IEFGINSIEDIVQQSHVKVTNHDI-YDNL---AKPAENGLMDQRMGTCS-STKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEH-----DVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCN--------DSNGSVKKLKSLSMICHKKYA----------LXXXXXXXXXXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSA--QTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPD--------ATCI--------RSV-KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITD-VSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE----STYCPCD--FTKELYHALQDYTYNEPALDNEIQY-ILKEFL------DSHERKFENLDEN 2895
            ++FG+ S +++ + S   VT   I Y       +P   GLMD R G    S +C TC      C GHFG+I+L+  +F  GF+  I+K+L+C+C  C  +L++ +     D+++  K   +  LT++                  C+  N        D+   V++ +S  +   K +               +     +  N   + K +L      L P  V ++F+ I  +    LGM + K  +   +I   +PVPP+ +RP+   Q S+ N   +DD+T  L   +  N   K ++     A +I  D        AT +        R++ K  + ++ + QRL GK+GR RGN+MGKR +F++RTVI+PDP+L+I+++ +P   A  +TF E  T +NI  L++L+  G  +YPGA                 +  +  N +    ++D       +   L++G  V+RH+   DI++FNRQP+LH++S     + +    TF  N     P+NADFDGDEMN+H PQ+ E +AE  EL    +   +P S  P+   +QD LTA    T +D F    E  NL++ +           +P+P I+KP  L++GKQ+ SL+I P    +  +    PD       E  S P   ++P DT V++ N +LIMG L KK LG  +   +    L+   D+        +  +    L   G S+GI D ++  A  + IQ  + +    +  E I+   N  L   PG ++ +T E++++  L+  RD+ G   + +L + N+   M + GSKGS INISQ++  VGQQ +EGKR+      +RTL ++ ++   P S+GFV NS+ +GL P EF FHAM GREGLIDTAVKTAETGY+QRRLIK +E + +++D TVR+    +VQ +YG DG     +E    +T  P    F K+      DY  NE AL   +Q  ++K+ +       S ER+FE + E+
Sbjct:   19 VQFGVLSPDELKRMS---VTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKDILTKSKGQPRKRLTHV---------------YDLCKGKNICEGGEEMDNKFGVEQPESEDITKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKIL------LSPERVHEIFKRIADEEDIILGM-DPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARN---QDDLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGA-----------------KYIIRDNGD----RIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWD-----GKVPQPAILKPRPLWTGKQIFSLII-PGHINAIRTHSTHPD-------EEDSGPYKNISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRL-FYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVI-EVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIP-FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSHKAFEKKFKF---DYA-NERALRRTLQEDVVKDVMTNAHVQSSLEREFEKMRED 959

HSP 2 Score: 90.1225 bits (222), Expect = 1.594e-17
Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = 1

Query: 3586 VEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
             +G  L+ +   + VD + T SN I+EI+ VLGI+A +  +  EL  V+       + RH+ LL D M   G +    R GI++     L   SFE+T+D L+EA+ H + D + G+S+++  G+  P GTG
Sbjct: 1335 TDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGESDPMKGVSENIMLGQLAPAGTG 1466

HSP 3 Score: 85.5001 bits (210), Expect = 4.145e-16
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 1

Query: 2944 FGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYL 3201
            F ++       +     K+ ++I  PG  +G +  QS+GEPATQMTL TFH+AGV++ N+T GVPR++E++N     KTP +TV+L
Sbjct: 1055 FRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFL 1140

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Zebrafish
Match: polr1a (RNA polymerase I subunit A [Source:ZFIN;Acc:ZDB-GENE-030131-5286])

HSP 1 Score: 276.559 bits (706), Expect = 5.421e-75
Identity = 203/633 (32.07%), Postives = 333/633 (52.61%), Query Frame = 1

Query:  940 GMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNI-VVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMS---LVISPYGT--LSPDSKRVIPDSRINQIVETSSNPVDYLNPN---DTLVVIHNSKLIMGQLPXXXXXXXXXXXIF--FRIL--KDVGDLASCQSMERLCQIALADLK-SRGFSLGITDV-----SPSAKLRTIQKELVEQNFAICEEF-----IKYYENGSLISDPGCSIEE----TLESKISSQLSKIRDEGGKEC-KTTLHK---RNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE 2742
            G+ Q L  K+G FR ++MGKR ++ +R+VI PD  +  NEI IP   A KLT+ +  T +N+  +++ +LNG   +PGA    +   S+      +Q +    ++ + T    +  RI     +K+   V RHI + D++L NRQP+LHR S QA    ++  EK    +   C  +NADFDGDEMN HFPQ+  ++AEA  L+S+ +    P  G+PL   +QD + +   +T +  F+   ++  L+   +      ++ ++P P ++KPV L++GKQ++S   L + P  +  L+   K  IP       V+ S  PV    P    ++ VVI   +L+MG L K   G  +   +   + +   +  G L SC     L ++  A L+  RGF+LG+ D+     +   + + I+K +   + A+   F      +  E      D   +I++     ++ K   +++++ +   K C    LH+    N+  +M   G+KGS +N  Q+   +GQ  +EG+R   +  + ++L  +      P S GFV+  F +G+ P EF FH M+GREGL+DTAVKT+ +GY+QR +IK LE L +++D TVRD  G++VQF YG DG D  K +
Sbjct:  401 GVRQLLEKKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLNGPNIHPGATMVVNEDGSRTILSSTNQTQREAVAKQLLTPSTGQH-RI----PMKI---VNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYTALVYRGL-TDKIGRVKLLP-PTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTGKAKIPG---KAWVKESPRPVPGYVPESMCESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSC-----LARLFTAYLQLYRGFTLGVEDILVKDGANKQRKKIIKKSVTCGSKALQAAFNLPASAEDTEARERWQDAHLNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRR-PPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQ 1014

HSP 2 Score: 88.9669 bits (219), Expect = 4.215e-17
Identity = 43/96 (44.79%), Postives = 68/96 (70.83%), Query Frame = 1

Query: 2995 KYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEI-MNAVANIKTPIITVYLTDDVRE-SFAKTMQLKIQPVFLKNVI 3276
            K+ +A+ +PG A+G++  QS+GEP+TQMTL TFHFAG   MN+T G+PR++EI + A +NIKTP++++ +  + +     KT++ KI  V L  V+
Sbjct: 1183 KWQRALCDPGEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLVASSNIKTPMMSIPVVMNKKALKQVKTLRKKITRVCLSEVL 1278

HSP 3 Score: 60.4622 bits (145), Expect = 1.643e-8
Identity = 50/172 (29.07%), Postives = 78/172 (45.35%), Query Frame = 1

Query: 3490 VLKVIGKVQIMGVKNVKRTVIQRNEQNRHN------IYVEGGKLLDLFQIEGV-DGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGM 3984
            V+K      IM  K + R ++  NE  R +      +  EG  + ++F+   + D    +SN +  +    GI+ A  +I  E+  V   + +  D RH+ L+AD MC+ G      R GI +S +S L   +FE +   L +A      DKL   S  L  GK    GTG+
Sbjct: 1508 VVKQAQNAVIMETKGITRCLL--NEVTRKDGSKEIMLNTEGINIHEMFKYADILDLKRLYSNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRFGI-QSNSSPLQQMTFETSFKFLKQATMLGSYDKLSSPSACLVVGKVVKGGTGI 1676

HSP 4 Score: 53.5286 bits (127), Expect = 2.136e-6
Identity = 30/98 (30.61%), Postives = 52/98 (53.06%), Query Frame = 1

Query:   55 AIEFGINSIEDIVQQSHVKVTNHDIYDNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHIL 345
             + FG+ S ++  + S   +TN  + DN+   A NGL D  +G   + + C TC ++   C GHFG+I+L   ++   F   +  +++  C +C HIL
Sbjct:   14 GMSFGLFSADETRKLSVKTITNPQLLDNVGNAAANGLYDLALGPADNKEICSTCMQDFSSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSC-HIL 110

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Zebrafish
Match: polr1a (RNA polymerase I subunit A [Source:ZFIN;Acc:ZDB-GENE-030131-5286])

HSP 1 Score: 276.559 bits (706), Expect = 5.578e-75
Identity = 203/633 (32.07%), Postives = 333/633 (52.61%), Query Frame = 1

Query:  940 GMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNI-VVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMS---LVISPYGT--LSPDSKRVIPDSRINQIVETSSNPVDYLNPN---DTLVVIHNSKLIMGQLPXXXXXXXXXXXIF--FRIL--KDVGDLASCQSMERLCQIALADLK-SRGFSLGITDV-----SPSAKLRTIQKELVEQNFAICEEF-----IKYYENGSLISDPGCSIEE----TLESKISSQLSKIRDEGGKEC-KTTLHK---RNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE 2742
            G+ Q L  K+G FR ++MGKR ++ +R+VI PD  +  NEI IP   A KLT+ +  T +N+  +++ +LNG   +PGA    +   S+      +Q +    ++ + T    +  RI     +K+   V RHI + D++L NRQP+LHR S QA    ++  EK    +   C  +NADFDGDEMN HFPQ+  ++AEA  L+S+ +    P  G+PL   +QD + +   +T +  F+   ++  L+   +      ++ ++P P ++KPV L++GKQ++S   L + P  +  L+   K  IP       V+ S  PV    P    ++ VVI   +L+MG L K   G  +   +   + +   +  G L SC     L ++  A L+  RGF+LG+ D+     +   + + I+K +   + A+   F      +  E      D   +I++     ++ K   +++++ +   K C    LH+    N+  +M   G+KGS +N  Q+   +GQ  +EG+R   +  + ++L  +      P S GFV+  F +G+ P EF FH M+GREGL+DTAVKT+ +GY+QR +IK LE L +++D TVRD  G++VQF YG DG D  K +
Sbjct:  410 GVRQLLEKKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLNGPNIHPGATMVVNEDGSRTILSSTNQTQREAVAKQLLTPSTGQH-RI----PMKI---VNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYTALVYRGL-TDKIGRVKLLP-PTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTGKAKIPG---KAWVKESPRPVPGYVPESMCESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSC-----LARLFTAYLQLYRGFTLGVEDILVKDGANKQRKKIIKKSVTCGSKALQAAFNLPASAEDTEARERWQDAHLNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRR-PPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQ 1023

HSP 2 Score: 88.9669 bits (219), Expect = 4.151e-17
Identity = 43/96 (44.79%), Postives = 68/96 (70.83%), Query Frame = 1

Query: 2995 KYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEI-MNAVANIKTPIITVYLTDDVRE-SFAKTMQLKIQPVFLKNVI 3276
            K+ +A+ +PG A+G++  QS+GEP+TQMTL TFHFAG   MN+T G+PR++EI + A +NIKTP++++ +  + +     KT++ KI  V L  V+
Sbjct: 1192 KWQRALCDPGEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLVASSNIKTPMMSIPVVMNKKALKQVKTLRKKITRVCLSEVL 1287

HSP 3 Score: 60.8474 bits (146), Expect = 1.525e-8
Identity = 50/172 (29.07%), Postives = 78/172 (45.35%), Query Frame = 1

Query: 3490 VLKVIGKVQIMGVKNVKRTVIQRNEQNRHN------IYVEGGKLLDLFQIEGV-DGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGM 3984
            V+K      IM  K + R ++  NE  R +      +  EG  + ++F+   + D    +SN +  +    GI+ A  +I  E+  V   + +  D RH+ L+AD MC+ G      R GI +S +S L   +FE +   L +A      DKL   S  L  GK    GTG+
Sbjct: 1517 VVKQAQNAVIMETKGITRCLL--NEVTRKDGSKEIMLNTEGINIHEMFKYADILDLKRLYSNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRFGI-QSNSSPLQQMTFETSFKFLKQATMLGSYDKLSSPSACLVVGKVVKGGTGI 1685

HSP 4 Score: 53.5286 bits (127), Expect = 2.230e-6
Identity = 30/98 (30.61%), Postives = 52/98 (53.06%), Query Frame = 1

Query:   55 AIEFGINSIEDIVQQSHVKVTNHDIYDNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHIL 345
             + FG+ S ++  + S   +TN  + DN+   A NGL D  +G   + + C TC ++   C GHFG+I+L   ++   F   +  +++  C +C HIL
Sbjct:   14 GMSFGLFSADETRKLSVKTITNPQLLDNVGNAAANGLYDLALGPADNKEICSTCMQDFSSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSC-HIL 110

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Match: polr3a (polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Source:NCBI gene;Acc:100124725])

HSP 1 Score: 940.643 bits (2430), Expect = 0.000e+0
Identity = 570/1398 (40.77%), Postives = 809/1398 (57.87%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIY--DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKY--------ALXXXXXXXXXXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPDATCIR----------------SVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSK-RVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDY-TYNEPALD-NEI----QYILK--EFL---DSHERKFE----NLDENLVKTLSDY----YNSTEGLVF----GITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNV--IIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIG----KVQIMGVKNVKRTVIQRNEQN---RHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSD 4047
            K++  I FG+ S E + QQ+H+++ +  +Y  DN   P   G++D RMGT    + C TC +    C+GH+GY+DL    F  G+ K ++ IL+ ICKTC  ILLN  +       L++P LTY+QK+ ++  I  K  K   C +C   NGSVKK   L +I H+KY         +     + F+    +++E+++LL      L P  V  L + IP +    L M N +  K S+LI   + VPP+CIRPS  +  ++ + EDD+T+ L   I  N   K H +     +MI  D   ++                ++  KK  RG +QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L+I+E+++P + A  LTF E     N+  ++KL+ NG   +PGA            QQ  +Q+K  +       K  N   R + A++L+ GD V+RH+   DIVLFNRQPSLH+LS  A    VK  +TF FN C C P+NADFDGDEMN+H PQT EAKAEA  L+ +  N  +P +GEPL A +QD LTAAYLLT KDTF++  +   +I  I+        V +P P I+KPV L++GKQ+ SL++ P    S D+  R    ++  Q      +    L  ND+ V I NS+L+ G L K  LG GSK +IF+ +L+D G + +  +M RL ++A   L +RGFS+GI DV+P   L   +++L++  +  C+E+I+    G L   PGCS EETLE+ I  +LS IRD  G  C   L K NSPLIMA+CGSKGS+INISQM+ CVGQQ I G RV +    NR+L ++ ++ + P +KGFV+NSFYSGL P EF FH M+GREGL+DTAVKTAETGYMQRRL+K LEDL  ++D TVR  TG+++QF YG DG DP+ +E    P +F + L +    Y    EPAL  NE+    + I+K  EFL   DS+ ++ +     + E + KT   Y      +TE  V      IT +Q++ F++ C  KY +A +EPG+A+G +C QS+GEP TQMTLKTFHFAGVASMNIT GVPR++EI+NA  NI TPIIT +L  D    FA+ ++ +I+   L  +   I+   L     +   L L  +++ +L +  E V  ++   K++     +       + +      K +   VL+ +     KV + G+  V R VI  +EQ+   ++ + VEG  L  +    GV G  T SN+  E+ + LGI+AA+  IINE+   M  H ++ D RHVMLLAD+M Y G++ G  R G++K K SVL LASFEKT DHL +AAY  QKD + G+S+ +  G    IGTG+  ++     +    RRP + D
Sbjct:    3 KSISHICFGVKSAEQMRQQAHIQIVSKSLYSQDNNHTPLAFGVLDHRMGTSEKDRHCQTCGKNLAECLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSRILLNAEERKQFLDFLKRPGLTYLQKRGLKKKISDKCRKKTVCLYCGAYNGSVKKCGLLKII-HEKYKTTKKVVDPMVSHFLQSFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLM-NPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQLQCALYINSELSGIPMNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPGANFI---------QQRHTQMKRFL-------KYGN---REKIAQELRFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEAYVLMGTKANLVTPRNGEPLIAAIQDFLTAAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILQP----SHDNPVRANLRTKGKQYCGKGED----LCHNDSYVTIQNSELMCGSLDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVFLSNRGFSIGIGDVTPGQGLLKAKQDLLDAGYKKCDEYIEALNTGKLQPQPGCSAEETLEALILRELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD-GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLENVKAVYPCSEEPALSKNELILTSESIMKKTEFLCCQDSYLQEIKKFVTGVSERIKKTRDKYGINDNGTTEPRVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHLDIDDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFLLVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDIAVHGEAVLCVTPRENSKSSMYYVLQSLKEDLPKVVVQGIPEVARAVIHIDEQSGKEKYKLLVEGDNLRSVMATHGVKGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADKDPSPPRRPLIFD 1370

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Match: polr3a (polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Source:NCBI gene;Acc:100124725])

HSP 1 Score: 939.488 bits (2427), Expect = 0.000e+0
Identity = 573/1409 (40.67%), Postives = 811/1409 (57.56%), Query Frame = 1

Query:   10 MKSLVRPGTEDKAVCAIEFGINSIEDIVQQSHVKVTNHDIY--DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKY--------ALXXXXXXXXXXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPDATCIR----------------SVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSK-RVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDY-TYNEPALD-NEI----QYILK--EFL---DSHERKFE----NLDENLVKTLSDY----YNSTEGLVF----GITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNV--IIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIG----KVQIMGVKNVKRTVIQRNEQN---RHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSD 4047
            MK   R     K +  I FG+ S E + QQ+H+++ +  +Y  DN   P   G++D RMGT    + C TC +    C+GH+GY+DL    F  G+ K ++ IL+ ICKTC  ILLN  +       L++P LTY+QK+ ++  I  K  K   C +C   NGSVKK   L +I H+KY         +     + F+    +++E+++LL      L P  V  L + IP +    L M N +  K S+LI   + VPP+CIRPS  +  ++ + EDD+T+ L   I  N   K H +     +MI  D   ++                ++  KK  RG +QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L+I+E+++P + A  LTF E     N+  ++KL+ NG   +PGA            QQ  +Q+K  +       K  N   R + A++L+ GD V+RH+   DIVLFNRQPSLH+LS  A    VK  +TF FN C C P+NADFDGDEMN+H PQT EAKAEA  L+ +  N  +P +GEPL A +QD LTAAYLLT KDTF++  +   +I  I+        V +P P I+KPV L++GKQ+ SL++ P    S D+  R    ++  Q      +    L  ND+ V I NS+L+ G L K  LG GSK +IF+ +L+D G + +  +M RL ++A   L +RGFS+GI DV+P   L   +++L++  +  C+E+I+    G L   PGCS EETLE+ I  +LS IRD  G  C   L K NSPLIMA+CGSKGS+INISQM+ CVGQQ I G RV +    NR+L ++ ++ + P +KGFV+NSFYSGL P EF FH M+GREGL+DTAVKTAETGYMQRRL+K LEDL  ++D TVR  TG+++QF YG DG DP+ +E    P +F + L +    Y    EPAL  NE+    + I+K  EFL   DS+ ++ +     + E + KT   Y      +TE  V      IT +Q++ F++ C  KY +A +EPG+A+G +C QS+GEP TQMTLKTFHFAGVASMNIT GVPR++EI+NA  NI TPIIT +L  D    FA+ ++ +I+   L  +   I+   L     +   L L  +++ +L +  E V  ++   K++     +       + +      K +   VL+ +     KV + G+  V R VI  +EQ+   ++ + VEG  L  +    GV G  T SN+  E+ + LGI+AA+  IINE+   M  H ++ D RHVMLLAD+M Y G++ G  R G++K K SVL LASFEKT DHL +AAY  QKD + G+S+ +  G    IGTG+  ++     +    RRP + D
Sbjct:    1 MKEQFRETDVAKKISHICFGVKSAEQMRQQAHIQIVSKSLYSQDNNHTPLAFGVLDHRMGTSEKDRHCQTCGKNLAECLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSRILLNAEERKQFLDFLKRPGLTYLQKRGLKKKISDKCRKKTVCLYCGAYNGSVKKCGLLKII-HEKYKTTKKVVDPMVSHFLQSFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLM-NPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQLQCALYINSELSGIPMNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPGANFI---------QQRHTQMKRFL-------KYGN---REKIAQELRFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEAYVLMGTKANLVTPRNGEPLIAAIQDFLTAAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILQP----SHDNPVRANLRTKGKQYCGKGED----LCHNDSYVTIQNSELMCGSLDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVFLSNRGFSIGIGDVTPGQGLLKAKQDLLDAGYKKCDEYIEALNTGKLQPQPGCSAEETLEALILRELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD-GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLENVKAVYPCSEEPALSKNELILTSESIMKKTEFLCCQDSYLQEIKKFVTGVSERIKKTRDKYGINDNGTTEPRVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHLDIDDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFLLVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDIAVHGEAVLCVTPRENSKSSMYYVLQSLKEDLPKVVVQGIPEVARAVIHIDEQSGKEKYKLLVEGDNLRSVMATHGVKGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADKDPSPPRRPLIFD 1379

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Match: polr3a (polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Source:NCBI gene;Acc:100124725])

HSP 1 Score: 930.628 bits (2404), Expect = 0.000e+0
Identity = 565/1385 (40.79%), Postives = 801/1385 (57.83%), Query Frame = 1

Query:   82 EDIVQQSHVKVTNHDIY--DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKY--------ALXXXXXXXXXXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPDATCIR----------------SVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSK-RVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDY-TYNEPALD-NEI----QYILK--EFL---DSHERKFE----NLDENLVKTLSDY----YNSTEGLVF----GITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNV--IIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIG----KVQIMGVKNVKRTVIQRNEQN---RHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSD 4047
            E + QQ+H+++ +  +Y  DN   P   G++D RMGT    + C TC +    C+GH+GY+DL    F  G+ K ++ IL+ ICKTC  ILLN  +       L++P LTY+QK+ ++  I  K  K   C +C   NGSVKK   L +I H+KY         +     + F+    +++E+++LL      L P  V  L + IP +    L M N +  K S+LI   + VPP+CIRPS  +  ++ + EDD+T+ L   I  N   K H +     +MI  D   ++                ++  KK  RG +QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L+I+E+++P + A  LTF E     N+  ++KL+ NG   +PGA            QQ  +Q+K  +       K  N   R + A++L+ GD V+RH+   DIVLFNRQPSLH+LS  A    VK  +TF FN C C P+NADFDGDEMN+H PQT EAKAEA  L+ +  N  +P +GEPL A +QD LTAAYLLT KDTF++  +   +I  I+        V +P P I+KPV L++GKQ+ SL++ P    S D+  R    ++  Q      +    L  ND+ V I NS+L+ G L K  LG GSK +IF+ +L+D G + +  +M RL ++A   L +RGFS+GI DV+P   L   +++L++  +  C+E+I+    G L   PGCS EETLE+ I  +LS IRD  G  C   L K NSPLIMA+CGSKGS+INISQM+ CVGQQ I G RV +    NR+L ++ ++ + P +KGFV+NSFYSGL P EF FH M+GREGL+DTAVKTAETGYMQRRL+K LEDL  ++D TVR  TG+++QF YG DG DP+ +E    P +F + L +    Y    EPAL  NE+    + I+K  EFL   DS+ ++ +     + E + KT   Y      +TE  V      IT +Q++ F++ C  KY +A +EPG+A+G +C QS+GEP TQMTLKTFHFAGVASMNIT GVPR++EI+NA  NI TPIIT +L  D    FA+ ++ +I+   L  +   I+   L     +   L L  +++ +L +  E V  ++   K++     +       + +      K +   VL+ +     KV + G+  V R VI  +EQ+   ++ + VEG  L  +    GV G  T SN+  E+ + LGI+AA+  IINE+   M  H ++ D RHVMLLAD+M Y G++ G  R G++K K SVL LASFEKT DHL +AAY  QKD + G+S+ +  G    IGTG+  ++     +    RRP + D
Sbjct:    7 EQMRQQAHIQIVSKSLYSQDNNHTPLAFGVLDHRMGTSEKDRHCQTCGKNLAECLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSRILLNAEERKQFLDFLKRPGLTYLQKRGLKKKISDKCRKKTVCLYCGAYNGSVKKCGLLKII-HEKYKTTKKVVDPMVSHFLQSFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLM-NPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQLQCALYINSELSGIPMNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPGANFI---------QQRHTQMKRFL-------KYGN---REKIAQELRFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEAYVLMGTKANLVTPRNGEPLIAAIQDFLTAAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILQP----SHDNPVRANLRTKGKQYCGKGED----LCHNDSYVTIQNSELMCGSLDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVFLSNRGFSIGIGDVTPGQGLLKAKQDLLDAGYKKCDEYIEALNTGKLQPQPGCSAEETLEALILRELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD-GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLENVKAVYPCSEEPALSKNELILTSESIMKKTEFLCCQDSYLQEIKKFVTGVSERIKKTRDKYGINDNGTTEPRVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHLDIDDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFLLVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDIAVHGEAVLCVTPRENSKSSMYYVLQSLKEDLPKVVVQGIPEVARAVIHIDEQSGKEKYKLLVEGDNLRSVMATHGVKGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADKDPSPPRRPLIFD 1361

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Match: ctdnep1 (CTD nuclear envelope phosphatase 1 [Source:Xenbase;Acc:XB-GENE-5939296])

HSP 1 Score: 427.943 bits (1099), Expect = 1.325e-125
Identity = 311/964 (32.26%), Postives = 496/964 (51.45%), Query Frame = 1

Query:  142 AKPAENGLMDQRMGTCSST-KCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEH-----DVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNG--SVKKLKSLSMICHKKYALXXXXXXXXXXXXNY---SQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSA--QTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPD--------ATCI--------RSV-KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE----STYCPCD--FTKELYHALQDYTYNEPALDNEIQY-ILKEFL-DSH-----ERKFENLDEN 2895
             +P   GLMD R G    T +C TC      C GHFG+I+L+  +F  GFL   +K+L+C+C  C  +L++ +     D++   K   K  LT++ +      I +   ++        + G   ++K K        +  ++    + + ++++    SQE K LL+       P  V ++F+ I  +    LGM + +  +   LI   +PVPP+ +RP+   Q S+ N   +DD+T  L   +  N   + ++ +   A +I  D        AT +        R++ K  + ++ + QRL GK+GR RGN+MGKR +F++RTVI+PDP+L I+++ +P   A  +TF E  T +NI  L++L+  G  +YPGA                 +  +  N +    ++D       +   L++G  V+RH+   DIV+FNRQP+LH++S     + +    TF  N     P+NADFDGDEMN+H PQ+ E +AE  EL    +   +P S  P+   +QD LTA    T +D F    E  NL++ +           +P+P I+KP  L++GKQ+ SL++ P       +    PD       +  S P  +++P DT V++ N +LIMG L KK LG  +   +    L ++G   +      +  +    L   G ++GI D    AK     +  +++      E I+   N  L   PG ++ +T E++++  L+  RD+ G   + +L + N+   M + G+KGS INISQ++  VGQQ +EGKR+      +RTL ++ ++   P S+GFV NS+ +GL P EF FHAM GREGLIDTAVKTAETGY+QRRLIK +E + +++D TVR+    +VQ +YG DG     +E    +T  P +  F K+      DY  NE AL   +Q  ++KE L D+H     E++FE + E+
Sbjct:   48 GRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDANNPKIKDILIKSKGQPKKRLTHVYELCKGKNICEGGEEMDNKFGVEQTEGDEDIQKEKGHGGCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLS-------PERVHEIFKRITDEECFILGM-DPRFARPEWLIVTVLPVPPLSVRPAVVMQGSARN---QDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGA-----------------KYIIRDNGD----RIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG-----KVPQPAILKPRPLWTGKQIFSLIV-PGHINCIRTHSTHPD-------DEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYL-EMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP-FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEGVEFQNLATLKPSNKAFEKKFKF---DYA-NERALRRTLQEDVVKEILSDAHVQNELEKEFEKMKED 960

HSP 2 Score: 86.2705 bits (212), Expect = 3.535e-16
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 1

Query: 2944 FGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYL 3201
            F ++       +     K+ +A+  PG  +G +  QS+GEPATQMTL TFH+AGV++ N+T GVPR++E++N     KTP +TV+L
Sbjct: 1056 FRLSGEAFDWLLGEIESKFNQAVAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFL 1141

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Match: ctdnep1 (CTD nuclear envelope phosphatase 1 [Source:Xenbase;Acc:XB-GENE-5939296])

HSP 1 Score: 427.172 bits (1097), Expect = 5.100e-125
Identity = 311/964 (32.26%), Postives = 496/964 (51.45%), Query Frame = 1

Query:  142 AKPAENGLMDQRMGTCSST-KCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEH-----DVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNG--SVKKLKSLSMICHKKYALXXXXXXXXXXXXNY---SQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSA--QTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPD--------ATCI--------RSV-KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE----STYCPCD--FTKELYHALQDYTYNEPALDNEIQY-ILKEFL-DSH-----ERKFENLDEN 2895
             +P   GLMD R G    T +C TC      C GHFG+I+L+  +F  GFL   +K+L+C+C  C  +L++ +     D++   K   K  LT++ +      I +   ++        + G   ++K K        +  ++    + + ++++    SQE K LL+       P  V ++F+ I  +    LGM + +  +   LI   +PVPP+ +RP+   Q S+ N   +DD+T  L   +  N   + ++ +   A +I  D        AT +        R++ K  + ++ + QRL GK+GR RGN+MGKR +F++RTVI+PDP+L I+++ +P   A  +TF E  T +NI  L++L+  G  +YPGA                 +  +  N +    ++D       +   L++G  V+RH+   DIV+FNRQP+LH++S     + +    TF  N     P+NADFDGDEMN+H PQ+ E +AE  EL    +   +P S  P+   +QD LTA    T +D F    E  NL++ +           +P+P I+KP  L++GKQ+ SL++ P       +    PD       +  S P  +++P DT V++ N +LIMG L KK LG  +   +    L ++G   +      +  +    L   G ++GI D    AK     +  +++      E I+   N  L   PG ++ +T E++++  L+  RD+ G   + +L + N+   M + G+KGS INISQ++  VGQQ +EGKR+      +RTL ++ ++   P S+GFV NS+ +GL P EF FHAM GREGLIDTAVKTAETGY+QRRLIK +E + +++D TVR+    +VQ +YG DG     +E    +T  P +  F K+      DY  NE AL   +Q  ++KE L D+H     E++FE + E+
Sbjct:   48 GRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDANNPKIKDILIKSKGQPKKRLTHVYELCKGKNICEGGEEMDNKFGVEQTEGDEDIQKEKGHGGCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLS-------PERVHEIFKRITDEECFILGM-DPRFARPEWLIVTVLPVPPLSVRPAVVMQGSARN---QDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGA-----------------KYIIRDNGD----RIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWD-----GKVPQPAILKPRPLWTGKQIFSLIV-PGHINCIRTHSTHPD-------DEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYL-EMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP-FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEGVEFQNLATLKPSNKAFEKKFKF---DYA-NERALRRTLQEDVVKEILSDAHVQNELEKEFEKMKED 960

HSP 2 Score: 85.8853 bits (211), Expect = 4.413e-16
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 1

Query: 2944 FGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYL 3201
            F ++       +     K+ +A+  PG  +G +  QS+GEPATQMTL TFH+AGV++ N+T GVPR++E++N     KTP +TV+L
Sbjct: 1056 FRLSGEAFDWLLGEIESKFNQAVAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFL 1141

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Match: Polr3a (polymerase (RNA) III (DNA directed) polypeptide A [Source:MGI Symbol;Acc:MGI:2681836])

HSP 1 Score: 929.858 bits (2402), Expect = 0.000e+0
Identity = 562/1397 (40.23%), Postives = 795/1397 (56.91%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIY--DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKY--------ALXXXXXXXXXXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPDATCIR----------------SVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDY-TYNEPALD--------------NEIQYILKEFLDSHERKFENLDENLVKTLSDY----YNSTEGLVF----GITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNV--IIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIG----KVQIMGVKNVKRTVIQRNEQN---RHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSD 4047
            K +  I FG+ S E++ QQ+H++V + ++Y  DN   P   G++D RMGT    + C TC +    C+GH+GYIDL    F  G+ + ++ IL+ ICKTC HI+L++ +       L++P LTY+QK+ ++  I  K  K   C +C   NG+VKK   L +I H+KY         +     + FE    +++E++ LL      L P  V  LF+ IP +    L M N ++ K S+LI   + VPP+CIRPS  +  ++ + EDD+T+ L   I  N   K H +     +MI  D   ++                ++  KK  RG +QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L+I+E+++P + A  LTF E     NI  L+KL+ NG   +PGA            QQ   Q+K  +       K  N   R + A++LK GD V+RH+   D+VLFNRQPSLH+LS  A    VK  +TF FN C C P+NADFDGDEMN+H PQT EAKAEA+ L+ +  N  +P +GEPL A +QD LT AYLLT KDTF++  +   +I  I+        V +P P I+KPV L++GKQ+ S+++ P      D   V  + R     +      + L  ND+ V I NS+L+ G + K  LG GSK +IF+ +L+D G   +  +M RL ++A   L +RGFS+GI DV+P   L   + EL+   +  C+E+I+    G L   PGC+ EETLE+ I  +LS IRD  G  C   L K NSPL MA+CGSKGS+INISQM+ CVGQQ I G RV +    NR+L ++ ++ + P +KGFV+NSFYSGL P EF FH M+GREGL+DTAVKTAETGYMQRRL+K LEDL  ++D TVR  TG+++QF YG DG DP+ +E    P +F + L +    Y    EPAL               NE       FL   +   + + E + KT   Y      +TE  V      IT +Q++ F++ C  KY +A +EPG+A+G +C QS+GEP TQMTLKTFHFAGVASMNIT GVPR++EI+NA   I TPIIT  L  D    +A+ ++ +I+   L  +   I+   L     +   L L  +++ +L +  E V  ++ + K++     V       V +      K +   VL+ +     KV + G+  V R VI  +EQ+   +  + VEG  L  +    GV G  T SN+  E+ + LGI+AA+  IINE+   M  H ++ D RHVMLL+D+M Y G++ G  R G++K K SVL LASFEKT DHL +AAY  QKD + G+S+ +  G    IGTG+  ++   + +    RRP + D
Sbjct:   13 KKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQFLDFLKRPGLTYLQKRGLKKKISDKCRKKSTCHYCGAFNGTVKKCGLLKII-HEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLM-NPESGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFI---------QQRHMQMKRFL-------KYGN---REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRP-----SDDNPVRANLRTKG--KQYCGKGEDLCVNDSYVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD-GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVYPCQTEPALSKNDLTLTAEAIMKKNEFLCCQDSFLQEIKTFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKFKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANRDPKPPRRPLIFD 1380

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Match: Polr3a (polymerase (RNA) III (DNA directed) polypeptide A [Source:MGI Symbol;Acc:MGI:2681836])

HSP 1 Score: 403.675 bits (1036), Expect = 4.316e-125
Identity = 244/616 (39.61%), Postives = 351/616 (56.98%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIY--DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKYA--------LXXXXXXXXXXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPDATCIR----------------SVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISP 1800
            K +  I FG+ S E++ QQ+H++V + ++Y  DN   P   G++D RMGT    + C TC +    C+GH+GYIDL    F  G+ + ++ IL+ ICKTC HI+L++ +       L++P LTY+QK+ ++  I  K  K   C +C   NG+VKK   L +I H+KY         +     + FE    +++E++ LL      L P  V  LF+ IP +    L M N ++ K S+LI   + VPP+CIRPS  +  ++ + EDD+T+ L   I  N   K H +     +MI  D   ++                ++  KK  RG +QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L+I+E+++P + A  LTF E     NI  L+KL+ NG   +PGA            QQ   Q+K  +       K  N   R + A++LK GD V+RH+   D+VLFNRQPSLH+LS  A    VK  +TF FN C C P+NADFDGDEMN+H PQT EAKAEA+ L+ +  N  +P +GEPL A +QD LT AYLLT KDTF++  +   +I  I+        V +P P I+KPV L++GKQ+ S+++ P
Sbjct:   13 KKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQFLDFLKRPGLTYLQKRGLKKKISDKCRKKSTCHYCGAFNGTVKKCGLLKII-HEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLM-NPESGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFI---------QQRHMQMKRFL-------KYGN---REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRP 607

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Match: Polr2a (polymerase (RNA) II (DNA directed) polypeptide A [Source:MGI Symbol;Acc:MGI:98086])

HSP 1 Score: 388.652 bits (997), Expect = 4.309e-111
Identity = 272/793 (34.30%), Postives = 421/793 (53.09%), Query Frame = 1

Query:  625 LLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSA--QTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPD--------ATCI--------RSV-KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITD-VSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE----STYCPCD--FTKELYHALQDYTYNEPALDNEIQY-ILKEFL-DSH-----ERKFENLDEN 2895
            LL P  V ++F+ I  +    LGM   +  +   +I   +PVPP+ +RP+   Q S+ N   +DD+T  L   +  N   + ++ +   A +I  D        AT +        R++ K  + ++ + QRL GK+GR RGN+MGKR +F++RTVI+PDP+L I+++ +P   A  +TF E  T +NI  L++L+  G  +YPGA                 +  +  N +    ++D       +   L+ G  V+RH+   DIV+FNRQP+LH++S     + +    TF  N     P+NADFDGDEMN+H PQ+ E +AE  EL    +   +P S  P+   +QD LTA    T +D F    E  NL++ +           +P+P I+KP  L++GKQ+ SL+I P       +    PD       +  S P  +++P DT VV+ N +LIMG L KK LG  +   +    L+   D+        +  +    L   G ++GI D ++ S   + IQ  + +    + E  I+   N  L   PG ++ +T E++++  L+  RD+ G   + +L + N+   M + G+KGS INISQ++  VGQQ +EGKR+      +RTL ++ ++   P S+GFV NS+ +GL P EF FHAM GREGLIDTAVKTAETGY+QRRLIK +E + +++D TVR+    +VQ +YG DG     +E    +T  P +  F K+      DYT NE AL   +Q  ++K+ L ++H     ER+FE + E+
Sbjct:  215 LLSPERVHEIFKRISDEECFVLGME-PRYARPEWMIVTVLPVPPLSVRPAVVMQGSARN---QDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGA-----------------KYIIRDNGD----RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWD-----GKVPQPAILKPRPLWTGKQIFSLII-PGHINCIRTHSTHPD-------DEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRL-FYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIE-VIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP-FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRF---DYT-NERALRRTLQEDLVKDVLSNAHIQNELEREFERMRED 962

HSP 2 Score: 90.8929 bits (224), Expect = 9.982e-18
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 1

Query: 3580 IYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
            +  +G  L+ +   + VD + T SN I+EI+ VLGI+A +  +  EL  V+       + RH+ LL D M   G +    R G+++     L   SFE+T+D L+EAA H + D + G+S+++  G+  P GTG
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTG 1469

HSP 3 Score: 87.0409 bits (214), Expect = 1.605e-16
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 1

Query: 2944 FGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYL 3201
            F ++       +     K+ +AI  PG  +G +  QS+GEPATQMTL TFH+AGV++ N+T GVPR++E++N     KTP +TV+L
Sbjct: 1058 FRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFL 1143

HSP 4 Score: 68.5514 bits (166), Expect = 6.163e-11
Identity = 40/132 (30.30%), Postives = 68/132 (51.52%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDI----YDNLAKPAENGLMDQRMGTCSST-KCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEH-----DVMSHEKELRKPNLTYI 408
            + +  ++FG+ S +++ + S   VT   I         +P   GLMD R G    T +C TC      C GHFG+I+L+  +F  GFL   +K+L+C+C  C  +L++ +     D+++  K   K  LT++
Sbjct:   16 RTIKRVQFGVLSPDELKRMS---VTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHV 144

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Match: Polr2a (polymerase (RNA) II (DNA directed) polypeptide A [Source:MGI Symbol;Acc:MGI:98086])

HSP 1 Score: 387.111 bits (993), Expect = 1.420e-110
Identity = 272/793 (34.30%), Postives = 421/793 (53.09%), Query Frame = 1

Query:  625 LLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSA--QTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPD--------ATCI--------RSV-KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITD-VSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE----STYCPCD--FTKELYHALQDYTYNEPALDNEIQY-ILKEFL-DSH-----ERKFENLDEN 2895
            LL P  V ++F+ I  +    LGM   +  +   +I   +PVPP+ +RP+   Q S+ N   +DD+T  L   +  N   + ++ +   A +I  D        AT +        R++ K  + ++ + QRL GK+GR RGN+MGKR +F++RTVI+PDP+L I+++ +P   A  +TF E  T +NI  L++L+  G  +YPGA                 +  +  N +    ++D       +   L+ G  V+RH+   DIV+FNRQP+LH++S     + +    TF  N     P+NADFDGDEMN+H PQ+ E +AE  EL    +   +P S  P+   +QD LTA    T +D F    E  NL++ +           +P+P I+KP  L++GKQ+ SL+I P       +    PD       +  S P  +++P DT VV+ N +LIMG L KK LG  +   +    L+   D+        +  +    L   G ++GI D ++ S   + IQ  + +    + E  I+   N  L   PG ++ +T E++++  L+  RD+ G   + +L + N+   M + G+KGS INISQ++  VGQQ +EGKR+      +RTL ++ ++   P S+GFV NS+ +GL P EF FHAM GREGLIDTAVKTAETGY+QRRLIK +E + +++D TVR+    +VQ +YG DG     +E    +T  P +  F K+      DYT NE AL   +Q  ++K+ L ++H     ER+FE + E+
Sbjct:  215 LLSPERVHEIFKRISDEECFVLGME-PRYARPEWMIVTVLPVPPLSVRPAVVMQGSARN---QDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGA-----------------KYIIRDNGD----RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWD-----GKVPQPAILKPRPLWTGKQIFSLII-PGHINCIRTHSTHPD-------DEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRL-FYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIE-VIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP-FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRF---DYT-NERALRRTLQEDLVKDVLSNAHIQNELEREFERMRED 962

HSP 2 Score: 90.8929 bits (224), Expect = 1.198e-17
Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = 1

Query: 3586 VEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
             +G  L+ +   + VD + T SN I+EI+ VLGI+A +  +  EL  V+       + RH+ LL D M   G +    R G+++     L   SFE+T+D L+EAA H + D + G+S+++  G+  P GTG
Sbjct: 1338 TDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTG 1469

HSP 3 Score: 86.6557 bits (213), Expect = 1.925e-16
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 1

Query: 2944 FGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYL 3201
            F ++       +     K+ +AI  PG  +G +  QS+GEPATQMTL TFH+AGV++ N+T GVPR++E++N     KTP +TV+L
Sbjct: 1058 FRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFL 1143

HSP 4 Score: 68.5514 bits (166), Expect = 6.728e-11
Identity = 40/132 (30.30%), Postives = 68/132 (51.52%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDI----YDNLAKPAENGLMDQRMGTCSST-KCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEH-----DVMSHEKELRKPNLTYI 408
            + +  ++FG+ S +++ + S   VT   I         +P   GLMD R G    T +C TC      C GHFG+I+L+  +F  GFL   +K+L+C+C  C  +L++ +     D+++  K   K  LT++
Sbjct:   16 RTIKRVQFGVLSPDELKRMS---VTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHV 144

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Match: Polr1a (polymerase (RNA) I polypeptide A [Source:MGI Symbol;Acc:MGI:1096397])

HSP 1 Score: 280.411 bits (716), Expect = 3.723e-76
Identity = 195/633 (30.81%), Postives = 325/633 (51.34%), Query Frame = 1

Query:  940 GMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNI-VVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMS-----LVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPN---DTLVVIHNSKLIMGQLPXXXXXXXXXXXIF--FRILKDVGDLASCQSMERLCQIALADLK-SRGFSLGITDVSPSAKLRTIQKELVEQNF----------------AICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKEC-KTTLHKR---NSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE 2742
            G+ Q L  K+G FR ++MGKR ++ +R+VI PD  +  NEI IP   A KLT+ +  T +N+  L++ ++NG   +PGA    S +I+++  +           E +  +L         A K +    V RH+ + DI+L NRQP+LHR S QA    ++ +EK    +   C  +NADFDGDEMN HFPQ+   +AEA  L  + +    P  G+PL   +QD + +   +T +  F+  +++  L+   +      ++ + P P I+KP  L++GKQ++S     ++   Y  L+   K  I        V+    P+   +P+   ++ V+I   +L+ G L K   G  +   +   + I    G   S + +  L ++  A L+  RGF+LG+ D+        +++ ++E++                 A C+E    +++  L  D        ++ K   +++   +E  K C    LH++   N+  +M   G+KGS +N  Q+   +GQ  +EG+R   +  + ++L  +     +P + GFV+  F +G+ P EF FH M+GREGL+DTAVKT+ +GY+QR +IK LE L I++D TVRD  G++VQF YG DG D  K +
Sbjct:  423 GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGA----SMVINEDGSRTALSSVDAAQREAVAKQLLTPA---TGAPKPQGTKVVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGL-TDKVGRVKLFP-PAILKPFPLWTGKQVVSTLLINIIPEDYAPLNLSGKAKIGS---KAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEI---YGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQ--RDFNMIDMKFKEEVNHYSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRR-PPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLDIPKTQ 1037

HSP 2 Score: 92.0485 bits (227), Expect = 4.754e-18
Identity = 49/131 (37.40%), Postives = 80/131 (61.07%), Query Frame = 1

Query: 2857 DSHERKFENLDENLVKTLSDYYNSTEGLVFGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEI-MNAVANIKTPIITVYLTDDVRESFAKTMQLK 3246
            ++ E+K ++  +         Y  +E L     R+ ++L       K+ +++ +PG A+G++  QS+GEP+TQMTL TFHFAG   MN+T G+PR++EI M A ANIKTP+++V +  D +++  K   LK
Sbjct: 1168 ETFEKKIDDFSQEWAAQAERSYKKSE-LSLDRLRTLLQL-------KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF-DTKKALKKVKSLK 1289

HSP 3 Score: 64.3142 bits (155), Expect = 1.156e-9
Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = 1

Query: 3490 VLKVIGKVQIMGVKNVKRTVIQR--NEQNRHNIYV--EGGKLLDLFQI-EGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGM 3984
            V+ +  K  +   K + R ++    N +N   + +  EG  L +LF+  E +D    +SN I  +    GI+AA  +I  E+  V   + +  D RH+ L+AD MC+ G      R GI +S +S L   +FE +   L +A      D+L   S  L  GK    GTG+
Sbjct: 1541 VVSLAHKAIVYTTKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGL 1709

HSP 4 Score: 57.3806 bits (137), Expect = 1.622e-7
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 1

Query:   55 AIEFGINSIEDIVQQSHVKVTNHDIYDNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLF-PFGFLKDIVKILKCICKTCGHIL 345
             I FG+ S E++ + S   +TN    D L  P+ NGL D  +G   S + C TC ++   C GH G+IDL   ++ PF F K +  +L+  C +C H+L
Sbjct:   14 GISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATCVQDFNNCSGHLGHIDLPLTVYNPFLFDK-LYLLLRGSCLSC-HML 110

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Match: sp|Q5ZL98|RPC1_CHICK (DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus OX=9031 GN=POLR3A PE=2 SV=1)

HSP 1 Score: 933.71 bits (2412), Expect = 0.000e+0
Identity = 568/1408 (40.34%), Postives = 806/1408 (57.24%), Query Frame = 1

Query:   10 MKSLVRPGTEDKAVCAIEFGINSIEDIVQQSHVKVTNHDIY--DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKY--------ALXXXXXXXXXXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPDATCIR----------------SVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDY-TYNEPALD-NEI----QYILKE---------FLDSHERKFENLDENLVKTLSDY----YNSTEGLVF----GITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNV--IIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIG----KVQIMGVKNVKRTVIQRNEQN---RHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSD 4047
            +K   R     K +  I FG+ S E++ QQ+H++V + ++Y  DN   P + G++D RMGT    + C TC +    C+GH+GYIDL    F  G+ K ++ IL+ ICKTC  I+L+  +       L++P LTY+QK+ ++  + +K  K   C +C   NG+VKK   L +I H+KY         +     + FE    +++E++ LL      L P  V  LF+ IP +    L M N +  K S+LI   + VPP+CIRPS  +  ++ + EDD+T+ L   I  N   K H +     +MI  D   ++                ++  KK  RG +QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L+I+E+++P + A  LTF E     NI  ++KL+ NG   +PGA            QQ  +Q+K  +       K  N   R + A++LK GD V+RH+   DIVLFNRQPSLH+LS  A    VK  +TF FN C C P+NADFDGDEMN+H PQT EAKAEA+ L+ +  N  +P +GEPL A +QD LT AYLLT KDTF++  +   +I  I+        V +P P I+KPV L++GKQ+ S ++ P      D   V  + R     +      + L  ND+ V I NS+L+ G + K  LG GSK +IF+ +L+D G + +  +M RL ++A   L +RGFS+GI DV+P   L   + EL+   +  C+E+I+    G L   PGC+ EETLE+ I  +LS IRD  G  C   L K NSPLIMA+CGSKGS+INISQM+ CVGQQ I G RV +    NR+L ++ ++ + P +KGFV+NSFYSGL P EF FH M+GREGL+DTAVKTAETGYMQRRL+K LEDL  ++D TVR  TG+++QF YG DG DP+ +E    P +F + L +    Y   +EPAL  NE+    + I+K+         FL   ++  + + E + KT   Y      +TE  V      IT +Q++ F++ C  KY +A +EPG+A+G +C QS+GEP TQMTLKTFHFAGVASMNIT GVPR++EI+NA   I TPIIT  L  D    FA+ ++ +I+   L  +   I+   L     +   L L  +++ +L +  E V  ++   K++     V       V +      K +   VL+ +     KV + G+  V R VI  +EQ+   ++ + VEG  L  +    GV G  T SN+  E+ + LGI+AA+  IINE+   M  H ++ D RHVMLL+D+M Y G++ G  R G++K K SVL LASFEKT DHL +AAY  QKD + G+S+ +  G    IGTG+  ++     E    RRP + D
Sbjct:    2 VKEQFRESDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEKKQFLDYLKRPGLTYLQKRGLKKKVSEKCRKKNTCPYCGAFNGTVKKCGLLKII-HEKYKTNKKVVDPIVSTFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLM-NPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFI---------QQRHTQMKRFL-------KYGN---REKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSSILKP-----SDDCPVKANLRTKG--KQYCGKGEDLCYNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD-GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYPCRSEPALSKNELVLTSESIMKKNEFLCCRDSFLQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICISKLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQSLKEELPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADKESTPPRRPLIFD 1380

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Match: sp|A4IF62|RPC1_BOVIN (DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus OX=9913 GN=POLR3A PE=2 SV=1)

HSP 1 Score: 930.243 bits (2403), Expect = 0.000e+0
Identity = 563/1397 (40.30%), Postives = 802/1397 (57.41%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIY--DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKY--------ALXXXXXXXXXXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPDATCIR----------------SVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDYT-YNEPALD-NEI----QYILKE---------FLDSHERKFENLDENLVKTLSDY----YNSTEGLVF----GITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNV--IIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIG----KVQIMGVKNVKRTVIQRNEQN---RHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSD 4047
            K +  I FG+ S E++ QQ+H++V + ++Y  DN   P   G++D RMGT    + C TC +    C+GH+GYIDL    F  G+ + ++ IL+ ICKTC HI+L++ +       L++P LTY+QK+ ++  I  K  K   C  C   NG+VKK   L +I H+KY         +     + FE    +++E++ LL      L P  V  LF+ IP +    L M N +  K S+LI   + VPP+CIRPS  +  ++ + EDD+T+ L   I  N   K H +     +MI  D   ++                ++  KK  RG +QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L+I+E+++P + A  LTF E     NI  L+KL+ NG   +PGA            QQ  +Q+K  +       K  N   R + A++LK GD V+RH+   D+VLFNRQPSLH+LS  A    VK  +TF FN C C P+NADFDGDEMN+H PQT EAKAEA+ L+ +  N  +P +GEPL A +QD LT AYLLT KDTF++  +   +I  I+        V +P P I+KPV L++GKQ+ S+++ P      D   V  + R     +      + L  ND+ V I NS+L+ G + K  LG GSK +IF+ +L+D G   +  +M RL ++A   L +RGFS+GI DV+P   L   + EL+   +  C+E+I+    G L   PGC+ EETLE+ I  +LS IRD  G  C   L K NSPL MA+CGSKGS+INISQM+ CVGQQ I G RV +    NR+L ++ ++ + P +KGFV+NSFYSGL P EF FH M+GREGL+DTAVKTAETGYMQRRL+K LEDL  ++D TVR  TG+++QF YG DG DP+ +E    P +F + L +    +   +EPAL  NE+    + I+K+         FL   ++  + + E + KT   Y      +TE  V      IT +Q++ F++ C  KY +A +EPG+A+G +C QS+GEP TQMTLKTFHFAGVASMNIT GVPR++EI+NA   I TPIIT  L  D    +A+ ++ +I+   L  +   I+   L     +   L L  +++ +L +  E V  ++   K++     V       V +      K +   VL+ +     KV + G+  V R VI  +EQ+   ++ + VEG  L  +    GV G  T SN+  E+ + LGI+AA+  IINE+   M  H ++ D RHVMLL+D+M Y G++ G  R G++K K SVL LASFEKT DHL +AAY  QKD + G+S+ +  G    IGTG+  ++   + +    RRP + D
Sbjct:   13 KKISHICFGMKSAEEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNTCHHCGAFNGTVKKCGLLKII-HEKYKTNKKVVDPIVSSFLQSFETAIEHNKEVEPLLGKAQENLNPLVVLNLFKRIPAEDIPLLLM-NPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFI---------QQRHTQMKRFL-------KYGN---REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRP-----SDDNPVRANLRTKG--KQYCGRGEDLCVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD-GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCRSEPALSKNELLLSAESIMKKNEFLCCQDSFLQEIKKFIKEVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANRDPSPPRRPLIFD 1380

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Match: sp|O14802|RPC1_HUMAN (DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens OX=9606 GN=POLR3A PE=1 SV=2)

HSP 1 Score: 929.472 bits (2401), Expect = 0.000e+0
Identity = 562/1397 (40.23%), Postives = 803/1397 (57.48%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIY--DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKY--------ALXXXXXXXXXXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPDATCIR----------------SVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDYTY-NEPALD-NEI----QYILKE---------FLDSHERKFENLDENLVKTLSDY----YNSTEGLVF----GITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNV--IIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIG----KVQIMGVKNVKRTVIQRNEQN---RHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSD 4047
            K +  I FG+ S E++ QQ+H++V + ++Y  DN   P   G++D RMGT    + C TC +    C+GH+GYIDL    F  G+ + ++ IL+ ICKTC HI+L++ +       L++P LTY+QK+ ++  I  K  K   C  C   NG+VKK   L +I H+KY         +     + FE    +++E++ LL      L P  V  LF+ IP +    L M N +  K S+LI   + VPP+CIRPS  +  ++ + EDD+T+ L   I  N   K H +     +MI  D   ++                ++  KK  RG +QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L+I+E+++P + A  LTF E     NI  L+KL+ NG   +PGA            QQ  +Q+K  +       K  N   R + A++LK GD V+RH+   D+VLFNRQPSLH+LS  A    VK  +TF FN C C P+NADFDGDEMN+H PQT EAKAEA+ L+ +  N  +P +GEPL A +QD LT AYLLT KDTF++  +   +I  I+        V +P P I+KPV L++GKQ+ S+++ P      D   V  + R     +      + L  ND+ V I NS+L+ G + K  LG GSK +IF+ +L+D G   +  +M RL ++A   L +RGFS+GI DV+P   L   + EL+   +  C+E+I+    G L   PGC+ EETLE+ I  +LS IRD  G  C   L K NSPL MA+CGSKGS+INISQM+ CVGQQ I G RV +    NR+L ++ ++ + P +KGFV+NSFYSGL P EF FH M+GREGL+DTAVKTAETGYMQRRL+K LEDL  ++D TVR  TG+++QF YG DG DP+ +E    P +F + L +    +   +EPAL  NE+    + I+K+         FL   ++  + + E + KT   Y      +TE  V      IT +Q++ F++ C  KY +A +EPG+A+G +C QS+GEP TQMTLKTFHFAGVASMNIT GVPR++EI+NA   I TPIIT  L  D    +A+ ++ +I+   L  +   I+   L     +   L L  +++ +L +  E V  ++ + K++     V       V +      K +   VL+ +     KV + G+  V R VI  +EQ+   ++ + VEG  L  +    GV G  T SN+  E+ + LGI+AA+  IINE+   M  H ++ D RHVMLL+D+M Y G++ G  R G++K K SVL LASFEKT DHL +AAY  QKD + G+S+ +  G    IGTG+  ++     + +  +RP + D
Sbjct:   13 KKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKCGLLKII-HEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLM-NPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFI---------QQRHTQMKRFL-------KYGN---REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRP-----SDDNPVRANLRTKG--KQYCGKGEDLCANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD-GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPNPPKRPLIFD 1380

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Match: sp|O94666|RPC1_SCHPO (DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc1 PE=2 SV=1)

HSP 1 Score: 874.389 bits (2258), Expect = 0.000e+0
Identity = 540/1403 (38.49%), Postives = 793/1403 (56.52%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIYDNLAK-PAENGLMDQRMGTCS-STKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKYALXXXXXXXXXXXXNYSQEIKNL------LNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITI----------LLRMQIGDN--------KLHDMHSEYARMIKPDATCIR-SVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCC---PPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIP-DSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQ-DYTYNEPAL--DNEIQYILK-----EFLDSHERKF-ENLD----ENLVKTLS-----------------DYYNSTEGLVFG-------------ITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVI--IQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKS---VKIQ------NNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIGKVQIMGVKNVKRTVIQRNEQNRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTII 3996
            K +  ++FGIN  E+ V+   V+V+  D+Y    + PAE+G +D  MGT +    C TC      CMGHFGY+ L+  +F  G+ K  + IL+ ICK C  +LL++ +     K+LR+P +  +++  I   I     K+RRC  C+   G VKK   L +I  +   +++ Q        ++ + +K +      L+     L P  V  LF+ I     + LGM + ++ +  NL+++++P PP+CIRPS   + E  + EDD+T+          L+R  +           +   M    A  I  +   +R S    K IRG  QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L+I+++++P   A  LTF E  T  N  HL+  I NG   +PGA    + +I +E     S  K  +       +  N   R   A  LK+GD V+RH+   D+VLFNRQPSLH+LS  A  + V+  +T  FN C C P+NADFDGDEMN+H PQT EAK EA+EL+    N  SP +GEP+ A  QD +TAAYLL+ KDTF + +   N+      CC     +  + +P P I+KP  L++GKQ+ ++++ P    +  SK ++  D++        S   + + P D  ++I NS++I G + K ++G G K S+F+ IL+D G L + +++ RL ++    L +RGFS+GI DV P   L + ++ LV + +A  ++FI  Y  G L   PG   E TLE+KISS LSK+RD+ G+ C   L   NSPLIMA CGSKGS IN+SQMV CVGQQII GKRV +    +R+L ++ +N + P++KGFVSNSFYSGL P EFLFHA+SGREGL+DTAVKTAETGYM RRL+K LEDL+  +D TVR    ++VQF YG DG DP+ +E      +F +   H++  +Y  ++ A+     I Y+ +     +FL +  R F E +     EN+ K L+                 D  +  EG  F              +T  Q++ F+D C++KY +A +EPGTA+G I  QS+GEP TQMTLKTFHFAGVA+   T GVPR++EI+NA   I TPIIT  L +D  E  A+ ++ +I+  +LK+V   I+      +T +   ++ + +   QL I   D+  A+ +   +KI       NN ++ ++  T        +E     Q   +V+  V + G+  + R+VI + E  +  +++EG  L  +   EG+ G  T +NH++E+ +VLGI+AA+  II+E+   M  H LT D RH+MLL D+M   G++ G  R G++K K+SVL LASFEKT DHL  AA    KD + GIS+ +  GK  PIGT +  +I
Sbjct:   11 KRIKHLQFGINGPEEFVKDGTVEVSRRDLYTMTDRSPAEHGALDLHMGTSNKQINCATCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQEKRQFLKDLRRPGIDNLRRSQICKRINDHCKKMRRCSKCDAMQGVVKKAGPLKIIHERFRYVRKSQDDEENFRHSFDEALKTIPELKMHLSKAHDDLNPLKVLNLFKQITPVDCELLGM-DPEHGRPENLLWRYVPAPPVCIRPSV--AQEGATTEDDLTVKITEIIWTSSLIRAALSKGTPISNLMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGA----NYVIDRE-----SGFKRFL-------RFGN---RNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNI------CCYMMDASTHIDLPPPAIIKPRCLWTGKQVFTVLMKP----NRFSKVLVNLDAKTRSFSRIKSKTPE-MCPKDGYLMIRNSEIIAGVVDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDVQPGKSLSSQKEILVNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKVRDDVGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPD-GFQDRSLPHFHKNSKHPLAKGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYDGTVRSSNSDVVQFVYGDDGLDPTYMEGDGQAVEFKRTWIHSVNLNYDRHDSAMLPYEIIDYVNRALDDPKFLTNCNRDFIETIRTFVIENIAKYLASVRERRDLAPMLEEPDMDDLDDMEGDEFAPVAKRKSVENIIRVTEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAAQT-TLGVPRIKEIINAAKTISTPIITGQLINDRDERSARVVKGRIEKTYLKDVTSYIEEVYGPVTTYLSIQVNFDTISKLQLDITLADIAAAIWNTPKLKIPSQQVTVNNTLQQIHVHTSSDGKSSETEVYYRLQTYKRVLPDVVVAGIPTINRSVINQ-ESGKIELFMEGTGLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQLI 1377

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Match: sp|Q6BI69|RPC1_DEBHA (DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=RPC1 PE=3 SV=2)

HSP 1 Score: 873.618 bits (2256), Expect = 0.000e+0
Identity = 538/1470 (36.60%), Postives = 807/1470 (54.90%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIYDNLAK---PAENGLMDQRMGTCS-STKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLS-----MICHKKYALXXXXXXXXXXXXNYSQEIKNLLNSGVTL----------LRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDNKL-----------HDMHSEYARMIKPDATCIRSVKDKKV--------------IRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVM--IPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIP-DSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHA---------------------------LQD--YTYNE-----PALDNE-IQYI------------LKEFLDSHERKFENLDEN------LVKTLSDYY---NSTEGLVF-----GITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNV--IIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKS---VKIQNNAVRVVYKETGRVYIEVFSEKKINC-----------------------QKVLKVIGKVQIMGVKNVKRTVIQRNEQNRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFN-DSSEKDLRRRPTL 4041
            K +  IEFG  S +DI+ QS V+V   D+YD L K   P + G +D +MG  S + +C TC      C GHFG+I L+  +F  G+ K  +++L+CICK C  +LL+E    S   +LR+P++  +++  I   ++++  K RRC  CN  NG VKK  S +      I H  +    ++    +    + +E   + +    L          L P  V  LF+ I     + LG+ + +  +    I++++P PP+CIRPS    ++  S EDD+TI L   +  + L           +++  ++  +    A  I S                    IRG  QRL GK+GRFRGN+ GKR +F+ RTVISPDP+LKI+E+++P+  A  LT+ E  T YN   L+KLIL+G   +PGA       + K+ +     L+                 R++ A+ L +GD V+RHI+  DIVLFNRQPSLHRLS  +    ++  +TF  N C C P+NADFDGDEMN+H PQT EA+AEAI L+    N  +P SGEP+ A  QD +T +YL++ KD+F++      L+     C   +  +   IP P I KPV L++GKQ+ SL+I P    +  S  VI  D++       +    + ++PND  V+I  S+++ G + K  LG G K S+F+ IL+D G   +  +M R+ ++    L +RGFS+GI DV P + L+  ++ +VEQ +  C+E I  Y  G+L + PGC+ E+TLE+KI   LSK+R+E G+ C   L   N+PLIMA CGSKGS +N+SQMV  VGQQII G RV +    +R+L ++ +N ++P SKGFV NSF+SGL P EFLFH++SGREGL+DTAVKTAETGYM RRL+K L+DL+ ++D+TVR+ +  +VQF YG DG DP  +E    P +F ++  HA                           L+D    Y+      P  D++ I+YI            ++EF  +   K   + E       L +   D+     S E LV       ++ + +  F++ C  KY +A +EPGTA+G I  QS+GEP TQMTLKTFHFAGVASMN+T GVPR++EI+NA   I TPII   L +D  E  A+ ++ +++   L++V   I+         +   + LN ++  QL +  E +  ++ +   +KI    V V  K+   V + +   K IN                        Q + + + ++ I G+ ++ R VI   +  +  + VEG  L ++   +GV G  T +NHILE+++VLGI+AA+  II E++  M  H ++ D RH+ LL D+M Y G++ G  R G+SK ++SVL LASFEKT DHL +A+++ + DK+ G+S+ +  G+T  IGTG   ++ + D  +K L  +PTL
Sbjct:   11 KCIKGIEFGALSAKDIIAQSEVEVHTRDLYD-LEKGRIPKDGGALDTKMGISSNANECATCHGNLASCHGHFGHIKLALPVFHVGYFKATIQVLQCICKNCSAVLLDEQTKRSFLNDLRRPHIDNLRRMKILKKLLEQCKKQRRCLNCNHVNGVVKKAASGAGPAALKIVHDTFRWIGKKATPEKDL--WDKEFDEVFSRNPELEKFVKRIHDDLNPLKVLNLFKQISPSDCELLGIDSARGGRPEMYIWRYLPAPPVCIRPSVMMDAQ--SNEDDLTIKLTEIVWTSSLIKAGIEKGISINNLMEQWDYLQLSVAMYINSDSANPALLPSSGGGSKSSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSGPNVHPGA-----NYLLKQNESAKRNLRF--------------GDRVKLAKNLHIGDVVERHIEDGDIVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNIHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLVSHKDSFFDRASLVQLL-----CMMSDADIQFDIPPPAIFKPVMLWTGKQVFSLLIKP----NKKSNVVINLDAKNKTYTPPAKGFPNEMSPNDGFVIIRGSQILSGVMDKSTLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARYLGNRGFSIGINDVIPGSDLKQKKELMVEQAYLKCDELIDLYNRGNLETQPGCNEEQTLEAKIGGLLSKVREEVGEICINELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPD-GFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTPPEFLFHSISGREGLVDTAVKTAETGYMSRRLMKSLDDLSAQYDHTVRNSSNGIVQFTYGGDGLDPFDMEGDARPVNFVRQWDHAYNITFDIEDKGLLPYQIIELVDSILHPLEDRLVRYDNVGKIIPLEDSDKIEYIDQNDAEREFYQSIREFTTNKATKLAEIREKKMLKPFLTEPAEDFIRLDESDESLVAINQLSKVSANSINKFLEQCIYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINSVLVNDDDEIAARVVKGRVEKTLLEDVAYFIEDVYKNNMAYLSIKIDLNTIEKLQLELNIESIAHSIANAPKLKILAGDVSVTGKDRINVLVTLREPKSINLMKNASADYKGTDASIVNSLFFRMQHLKRALPRICIKGLPDISRAVINIRDDGKKELLVEGYGLKEVMSTDGVVGTKTSTNHILEVFQVLGIEAARASIIGEIDYTMSKHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKNDKIEGVSECIILGQTMNIGTGAFKLVNSFDVDKKALEMKPTL 1446

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Match: A0A0R3TK71 (DNA-directed RNA polymerase subunit OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS7538 PE=3 SV=2)

HSP 1 Score: 1072.38 bits (2772), Expect = 0.000e+0
Identity = 602/1378 (43.69%), Postives = 846/1378 (61.39%), Query Frame = 1

Query:   10 MKSLVRPGTEDKAVCAIEFGINSIEDIVQQSHVKVTNHDIY---DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICH---KKYALXXXXXXXXXXXXNYS-QEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVS---NLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGD--------------NKLHDMHSEYARMIKPDATCIRSVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETS---SNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDYT-YNEPALDNE-------------IQYILKEFLDSHERKFENLDENLVKTLSDYYNSTEGLVFG------------ITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVIIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIGKVQIMGVKNVKRTVIQRNEQNRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
            MK L RP    KA+  I F +    DI   S V++  + +Y   D   K  E G +D R+G     + C+TC  + + C+GH+GYIDL   +F  G+L  IVKIL+CICK C  +++ E     +       NL YIQKK +R I+ K +S+   C FC+  NG+VKK   LS I H   K YA K  +          S  ++  +    +  +RPY   +LF  IP +    L MS  +  KVS   NLI + +PVPP  IRPS  +   N S EDD+T +L+  +                     +H+E+ R+I    + +  ++D+K IRG++QRLA K GRFR N++GKRTN+T+RTVISPDP+L+I+E+ IPEYCA  LT+ E  T +NI  L+KL+LNG  KYPGAV     +  K P+    +      SE++   L + K R  +AR L+VGD V RH+   DI+LFNRQPSLHR+S QAF  VVK  +TF FNPCCC PFNADFDGDEMNVH PQT EA+AEA  L+ S+ N  +P +GEPL +P+QD++TA YLLT KD F+   +  +L+  +       +   +P P I+ PVKL++GKQ+ SL++SP  +          + +IN  V T    S   + + PND  VVI+NS+L+ G + KKLLG GSK SIF+ IL+D G  A   +M RL +IAL  L  RGFS+GI DV+PS  L   ++++++Q +A C+++I  YE  SL  +PGCS+EETLE ++S  LS+IRDE G  C+ +L++ N+ L+MA+ GSKGS  NISQM  CVGQQII G RV +     R+++ +    R+P +KGFVSNSFYSGL P EF FHAMSGREGL DTAVKTA+TGYMQRR++KFLEDL + +D TVRD   ++VQFKYG+DGFDP ++E    P DF +EL +    Y    E AL  +             I Y +   L  H  KF   DE ++  +     + +G+               +T +Q++ F+ +  +K+ +A+I+P TA+G ICGQS+GEPATQMTL+TFHFAGVASMNIT+GVPRM+EI+NAVANI TP++TV +TD      A+ +++ I+P  L ++ I  + +     ++  +  +  +M +  I P  V  A++S       V++V        + V+ E     +++++++  V + G+K V R VIQ+++   HNIYVEG K  ++  ++GV      SN+ILE+   LG++AA+ +++ EL  VM AH +T +IRHVMLLAD+M   G++ G+QRSG++K+KNSVLCLASFE+T DHL EAAYH+Q+D L GI++S+  G  T IGTG
Sbjct:    1 MKELYRPPEVPKAIKNIRFHLAGEVDIEALSEVQIIKYQLYSFVDGNRKGLEYGPLDPRLGATKRGEVCITCKLDHQECIGHWGYIDLPLPIFHTGYLWHIVKILQCICKHCARVMIPEKTRAKYLVSATNENLEYIQKKVLRKILHKSASRTTLCPFCHSINGTVKKGTGLSYIIHDFSKSYARKLDKAIEPYARVAESNSDLLTVAKKCIECIRPYQALELFSKIPTEDLPLLLMSFSEG-KVSHPRNLIIERVPVPPNAIRPSVISEVRNGSNEDDLTQILQWILSQAVTLEEDLSQSEFITHYDSLHAEFTRLINSQTSGLPPIQDQKFIRGILQRLATKHGRFRLNLLGKRTNYTARTVISPDPNLRIDEVCIPEYCATILTYPERVTEHNIEFLRKLVLNGPYKYPGAVY----LNYKSPENKPGE-----KSEILKKFLSHPKVRESSARSLRVGDVVDRHLIEGDIILFNRQPSLHRVSMQAFKAVVKPYRTFRFNPCCCTPFNADFDGDEMNVHLPQTEEARAEAKHLMLSLNNIANPKNGEPLISPIQDMITACYLLTLKDVFFEYDKACDLMAQLAAGSHSVQDCQLPPPAIVWPVKLWTGKQIFSLIMSPSCS---------HEVKINLRVSTKTIYSGKDEEMCPNDGFVVIYNSELLAGCMDKKLLGSGSKSSIFYSILRDYGGDACADAMWRLSRIALYYLSCRGFSIGIEDVTPSESLVEAKQKIIKQGYASCDDYINQYETNSLACNPGCSMEETLEMRLSQVLSRIRDEAGSACRRSLYRLNAALLMALIGSKGSLNNISQMCSCVGQQIIAGHRVPDSLNGERSIILFRPGSRTPDAKGFVSNSFYSGLTPYEFFFHAMSGREGLTDTAVKTADTGYMQRRIVKFLEDLTVAYDGTVRDSRDDIVQFKYGSDGFDPCEMEVDNFPVDFHRELMNIKAHYPCRTESALTPDQVKDAINVSLQMPIFYNVDPVLPLHINKF--FDEEIIPKM---IQARQGIPLDEVLTGVMAEPQRLTITQLRQFLMSSQKKFNRALIDPSTAVGAICGQSIGEPATQMTLQTFHFAGVASMNITQGVPRMREIVNAVANIHTPLLTVQITDPTSAVLARRVKMAIEPTRLADISIMLRQMLTPDKVYVLVEFDQKRMLRREITPRQVATAVRSASWAIRKVKIVDVVWSESQMRVYPEDLNKLEQLVQLLENVVVKGIKGVTRVVIQQDKAGHHNIYVEGAKFREVMAVQGVVPELVRSNNILEVERCLGVEAARRVVVEELCEVMAAHGVTVNIRHVMLLADLMTNRGEVYGYQRSGMAKAKNSVLCLASFERTGDHLFEAAYHSQEDNLAGITESIIVGNPTRIGTG 1354

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Match: W6UMT7 (DNA-directed RNA polymerase subunit OS=Echinococcus granulosus OX=6210 GN=EGR_02321 PE=3 SV=1)

HSP 1 Score: 1069.3 bits (2764), Expect = 0.000e+0
Identity = 594/1383 (42.95%), Postives = 857/1383 (61.97%), Query Frame = 1

Query:   10 MKSLVRPGTEDKAVCAIEFGINSIEDIVQQSHVKVTNHDIY---DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHK-KYALXXXXXXXXXXXXNYSQE---IKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNI--KVSNLIFKHIPVPPICIRPSAQTSSENTSREDDIT-----ILLRMQIGDNKLHD---------MHSEYARMIKPDATCIRSVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAV-----AYAS--GIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSS---NPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQ-DYTYNEPALD-NEIQYILKEFLDSHERKFENLDENLVKTLSDYYNS--------------------TEGLVFGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVIIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAV---RVVYKETGRVYIEVFSEKKINCQKVLKVIGKVQIMGVKNVKRTVIQRNEQNRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
            MK   RP    + + +I F + +  DI + +HV +    +Y   +   +  + GL+D ++G     + C TC  + + C+GH+GY DL   +F  G+L  IVKIL+CICK C  +LL++     +       NL YIQKK +R ++ K +S+   C +CN +NG++KK   LS + +    +L  +  K   ++ N ++E   +  L    V  +RP  V +LF  IP +    + M           NLI + IPVPP  IRPS  +  +N + EDD+T     IL +    +  L +         +HSE AR+I    + +  V D K +RG++QRL+GK GRFRGN++GKRTNFT+RTVISPDP+L I+E+ +P+YCA  LT+ E  T +N+  L+ L+LNG  K+PGA+     AY+S     SKEP             +V+   L + K R   A+ L+VGD V RH+   DIVLFNRQPSLHR+S QAF +VV   +TF FNPCCC PFNADFDGDEMN+H PQT EA+AEA  L+ S++N  SP +GEPL +P+QD++TA ++LT KD F+   +   L   +V      + + +P P ++ PVKL++GKQ+ SL++SP+    P +     + +IN  V T S      + L PND  VVI NS+L+ G + KKLLG GSK SIF+ IL+D G  A   +M RL +I L  L +RGFS+GI +V+P AKL   +++L+ Q FA C+ +I  YE  +L  +PGCS EETLE+ +S +LSKIRDE G  CK TLH  NSPL+MA  GSKGS++NISQM+ CVGQQII G+R+ +     R+L+++P   R+P +KGFVSNSFYSGL P EF FHAMSGREGL DTAVKTA+TGYMQRRL+KFLEDL + +D TVRD  G++VQF+YG+DG DP ++E    P D  +EL +        +EP++  +E++  +   L      F+++DE L  ++  ++ +                     E     +TR+Q++LF+    +K+ +A+IEPGTA+G +CGQS+GEPATQMTLKTFHFAGVASMNIT+GVPRM+EI+NAVANI+TP+++V +TD    + A+ ++L I+P  L ++ ++ +       +   + L+  +M +  I    V  A+++       +   RV + +T   ++ ++       + +++++  V + G+  V R VIQ ++  RHNI+VEG KL ++  + GV    T SN+ILE+   LG++AA+ ++++EL AVM  H +  +IRHVMLLAD+M   G+I G+QRSG++K+KNSVLCLASFE+T DHL EAAYH Q D L G+++S+  G  T IGTG
Sbjct:    1 MKDFYRPPEVPRTIKSIRFHLATEWDIERLAHVPIFKGLLYKESEGGGRSLDYGLLDSKLGATKRNELCDTCGLDHQTCIGHWGYFDLPMPVFHVGYLWHIVKILQCICKNCSRVLLSDQVKSRYLPICSNSNLEYIQKKMLRKVLHKLASRTTICPYCNAANGTIKKGNGLSYVLYDTSKSLARKVDKQLTKYANGAEENPEVLTLARKCVVAIRPSRVLELFSKIPTQDLPLILMPFDSEWFSHPRNLILERIPVPPSAIRPSVVSEVKNGTNEDDLTQMYQWILTQAATLEEDLSEPDLIASFDNLHSEVARLINSQLSGLPPVHDHKFVRGLLQRLSGKHGRFRGNLLGKRTNFTARTVISPDPNLSIDEVCVPDYCAKLLTYPERVTQFNLEFLRTLVLNGPYKHPGALFVRYKAYSSRSDQSSKEP-------------DVVKKFLASLKVRESVAKSLRVGDTVDRHLIDGDIVLFNRQPSLHRVSMQAFKVVVMANRTFRFNPCCCPPFNADFDGDEMNIHLPQTEEARAEAKHLMLSLRNIASPKNGEPLISPIQDLITATHVLTLKDVFFTFDQACQLACQLVAGSHIGREIQLPTPAVLWPVKLWTGKQIFSLIMSPH----PSN-----EVKINLRVPTKSIYLGRQEELCPNDGFVVIDNSELLAGCMDKKLLGSGSKSSIFYSILRDFGGEACADAMWRLSRIGLFYLSNRGFSIGIGEVTPDAKLVAAKQKLINQGFAKCDHYIHQYETNTLSCNPGCSTEETLEANLSQELSKIRDEAGSVCKRTLHPSNSPLVMAQSGSKGSFLNISQMIACVGQQIIGGRRIPDCLNGVRSLVHFPPGSRTPAAKGFVSNSFYSGLTPYEFFFHAMSGREGLTDTAVKTADTGYMQRRLVKFLEDLTVTYDGTVRDSRGDIVQFRYGSDGLDPGEMEVENFPADLKRELANIKGISPCRSEPSMTASEVEIAINAAL--RLPAFKDVDEALPTSIRTFFMNEVLPKMRLARGSRLAEVTVGVEAEPQRLTRTQLRLFLMRVKKKFERALIEPGTAVGALCGQSIGEPATQMTLKTFHFAGVASMNITQGVPRMREIVNAVANIRTPLLSVTITDPTSATLARRVKLLIEPTRLADIALRLRQCLSPDEVCVRVELDVKRMARREITAAQVANAVRNASWSTRRLKLSRVTFSDT---HLSIYPADMNRLELLVQMLEVVVVKGIPGVARVVIQEDKDGRHNIFVEGAKLREVMCVPGVVPEATRSNNILEVERCLGVEAARRVVMDELLAVMEGHGVEVNIRHVMLLADLMANRGEIYGYQRSGMAKAKNSVLCLASFERTGDHLFEAAYHAQDDTLSGVTESIIVGNHTRIGTG 1356

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Match: A0A068WMY0 (DNA-directed RNA polymerase subunit OS=Echinococcus granulosus OX=6210 GN=EgrG_000428100 PE=3 SV=1)

HSP 1 Score: 1068.91 bits (2763), Expect = 0.000e+0
Identity = 594/1383 (42.95%), Postives = 858/1383 (62.04%), Query Frame = 1

Query:   10 MKSLVRPGTEDKAVCAIEFGINSIEDIVQQSHVKVTNHDIY---DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHK-KYALXXXXXXXXXXXXNYSQE---IKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGM--SNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDIT-----ILLRMQIGDNKLHD---------MHSEYARMIKPDATCIRSVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAV-----AYAS--GIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSS---NPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQ-DYTYNEPALD-NEIQYILKEFLDSHERKFENLDENLVKTLSDYYNS--------------------TEGLVFGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVIIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAV---RVVYKETGRVYIEVFSEKKINCQKVLKVIGKVQIMGVKNVKRTVIQRNEQNRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
            MK   RP    + + +I F + +  DI + +HV +    +Y   +   +  + GL+D ++G     + C TC  + + C+GH+GY DL   +F  G+L  IVKIL+CICK C  +LL++     +       NL YIQKK +R ++ K +S+   C +CN +NG++KK   LS + +    +L  +  K   ++ N ++E   +  L    V  +RP  V +LF  IP +    + M   ++      NLI + IPVPP  IRPS  +  +N + EDD+T     IL +    +  L +         +HSE AR+I    + +  V D K +RG++QRL+GK GRFRGN++GKRTNFT+RTVISPDP+L I+E+ +P+YCA  LT+ E  T +N+  L+ L+LNG  K+PGA+     AY+S     SKEP             +V+   L + K R   A+ L+VGD V RH+   DIVLFNRQPSLHR+S QAF +VV   +TF FNPCCC PFNADFDGDEMN+H PQT EA+AEA  L+ S++N  SP +GEPL +P+QD++TA ++LT KD F+   +   L   +V      + + +P P ++ PVKL++GKQ+ SL++SP+    P +     + +IN  V T S      + L PND  VVI NS+L+ G + KKLLG GSK SIF+ IL+D G  A   +M RL +I L  L  RGFS+GI +V+P AKL   +++L+ Q FA C+ +I  YE  +L  +PGCS EETLE+ +S +LSKIRDE G  CK TLH  NSPL+MA  GSKGS++NISQM+ CVGQQII G+R+ +     R+L+++P   R+P +KGFVSNSFYSGL P EF FHAMSGREGL DTAVKTA+TGYMQRRL+KFLEDL + +D TVRD  G++VQF+YG+DG DP ++E    P D  +EL +        +EP++  +E++  +   L      F+++DE L  ++  ++ +                     E     +TR+Q++LF+    +K+ +A+IEPGTA+G +CGQS+GEPATQMTLKTFHFAGVASMNIT+GVPRM+EI+NAVANI+TP+++V +TD    + A+ ++L I+P  L ++ ++ +       +   + L+  +M +  I    V  A+++       +   RV + +T   ++ ++       + +++++  V + G+  V R VIQ ++  RHNI+VEG KL ++  + GV    T SN+ILE+   LG++AA+ ++++EL AVM  H +  +IRHVMLLAD+M   G+I G+QRSG++K+KNSVLCLASFE+T DHL EAAYH Q D L G+++S+  G  T IGTG
Sbjct:    1 MKDFYRPPEVPRTIKSIRFHLATEWDIERLAHVPIFKGLLYKESEGGGRSLDYGLLDSKLGATKRNELCDTCGLDHQTCIGHWGYFDLPMPVFHVGYLWHIVKILQCICKNCSRVLLSDQVKSRYLPICSNSNLEYIQKKMLRKVLHKLASRTTICPYCNAANGTIKKGNGLSYVLYDTSKSLARKVDKQLTKYANGAEENPEVLTLARKCVVAIRPSRVLELFSKIPTQDLPLILMPFDSEWFSHPRNLILERIPVPPSAIRPSVVSEVKNGTNEDDLTQMYQWILTQAATLEEDLSEPDLIASFDNLHSEVARLINSQLSGLPPVHDHKFVRGLLQRLSGKHGRFRGNLLGKRTNFTARTVISPDPNLSIDEVCVPDYCAKLLTYPERVTQFNLEFLRTLVLNGPYKHPGALFVRYKAYSSRSDQSSKEP-------------DVVKKFLASLKVRESVAKSLRVGDTVDRHLIDGDIVLFNRQPSLHRVSMQAFKVVVMANRTFRFNPCCCPPFNADFDGDEMNIHLPQTEEARAEAKHLMLSLRNIASPKNGEPLISPIQDLITATHVLTLKDVFFTFDQACQLACQLVAGSHIGREIQLPTPAVLWPVKLWTGKQIFSLIMSPH----PSN-----EVKINLRVPTKSIYSGRQEELCPNDGFVVIDNSELLAGCMDKKLLGSGSKSSIFYSILRDFGGEACADAMWRLSRIGLFYLSHRGFSIGIGEVTPDAKLVAAKQKLINQGFAKCDHYIHQYETNTLSCNPGCSTEETLEANLSQELSKIRDEAGSVCKRTLHPSNSPLVMAQSGSKGSFLNISQMIACVGQQIIGGRRIPDCLNGVRSLVHFPPGSRTPAAKGFVSNSFYSGLTPYEFFFHAMSGREGLTDTAVKTADTGYMQRRLVKFLEDLTVTYDGTVRDSRGDIVQFRYGSDGLDPGEMEVENFPADLKRELANIKGISPCRSEPSMTASEVEIAINAAL--RLPAFKDVDEALPTSIRTFFMNEVLPKMRLARGSRLAEVTVGVEAEPQRLTRTQLRLFLMRVKKKFERALIEPGTAVGALCGQSIGEPATQMTLKTFHFAGVASMNITQGVPRMREIVNAVANIRTPLLSVTITDPTSATLARRVKLLIEPTRLADIALRLRQCLSPDEVCVRVELDVKRMARREITAAQVANAVRNASWSTRRLKLSRVTFSDT---HLSIYPADMNRLELLVQMLEVVVVKGIPGVARVVIQEDKDGRHNIFVEGAKLREVMCVPGVVPEATRSNNILEVERCLGVEAARRVVMDELLAVMEGHGVEVNIRHVMLLADLMANRGEIYGYQRSGMAKAKNSVLCLASFERTGDHLFEAAYHAQDDTLSGVTESIIVGNHTRIGTG 1356

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Match: A0A0R3W552 (DNA-directed RNA polymerase subunit OS=Taenia asiatica OX=60517 GN=TASK_LOCUS5225 PE=3 SV=2)

HSP 1 Score: 1066.99 bits (2758), Expect = 0.000e+0
Identity = 596/1373 (43.41%), Postives = 849/1373 (61.84%), Query Frame = 1

Query:   10 MKSLVRPGTEDKAVCAIEFGINSIEDIVQQSHVKVTNHDIY---DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICH---KKYALXXXXXXXX-XXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGM--SNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDIT-----ILLRMQIGDNKLHD---------MHSEYARMIKPDATCIRSVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSS---NPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQ-DYTYNEPALD-NEIQYILKEFLDSHERKFENLDENL---VKT-----------------LSDYYNSTEGLVFGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVIIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIGKVQIMGVKNVKRTVIQRNEQNRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
            MK   RP    + + +I F + +  D+ + +HV +  + +Y   +   +  + GL+D ++G     + C TC  + + C+GH+GYIDL   +F  G+L  IVKIL+CICK C  +LL++  +  +       NL YIQKK +R  + K +S+   C  CN  NG+VKK   LS I H   K  A K  ++        + + EI NL    V  +RP  V  LF  IP +    L M   ++      NLI + IPV P  +RPS  +  +N + EDD+T     IL +    +  L +         +HSE AR+I    + +  V + K +RG++QRL+GK GRFRGN++GKRTNFT+RTVISPDP+L+I+E+ IP++CA  LT+ E  T +N+  L+ L+LNG  K+PGA+       + +  Q   +       +V+   L + K R   A+ L+VGD V RH+   DIVLFNRQPSLHR+S QAF +VV   +TF FNPCCC PFNADFDGDEMNVH PQT EA+AEA  L+ S++N  SP +GEPL +P+QD++TA ++LT KD F+   +   L   +V      + + +P P I+ PVKL++GKQ+ SLVISP+    P +     + +IN  V T S   N  + L PND  VVI NS+L+ G + KKLLG GSK SIF+ IL+D G  A   +M RL +I+L  L  RGFS+GI +V+P AKL   +++L+ Q FA C+ +I  YE  +L  +PGCS EETLE+ IS +LS IRDE G  CK TLH  NSPL+MA  GSKGS++NISQM+ CVGQQII G+R+ +     R+L+++    R+P +KGFVSNSFYSGL P EF FHAMSGREGL DTAVKTA+TGYMQRRL+KFLEDL + +D TVRD  G++VQF+YG+DG DP ++E    P D  +EL +        +EP++  +E++  +   L+     F+N+DE L   +KT                 +++     E     +TR+Q++LF+    +K+ +A IEPGTA+G +CGQS+GEPATQMTLKTFHFAGVASMNIT+GVPRM+EI+NAVANI TP+++V +TD    S A+ ++L I+P  L ++ ++ +       +   + L+  +M +  I    V  A+++       +++        ++ ++       + +++++  V + G+  V R VIQ ++  RHNI+VEG KL ++  + GV    T SN+ILE+   LG++AA+ ++++EL AVM  H +  +IRHVMLLAD+M   G+I G+QRSG++K+KNSVLCLASFE+T DHL EAAYH Q D L G+++S+  G  T IGTG
Sbjct:    1 MKDFYRPPDVPRMIKSIRFHLATESDVERLAHVPILKYLLYLETEGSRRCLDYGLLDPKLGATKRNELCDTCGLDHQTCIGHWGYIDLPTPVFHVGYLWHIVKILQCICKNCSRVLLSDQAMSRYLPICSNSNLEYIQKKLLRKALHKLASRTTICPHCNAVNGTVKKGSGLSYIVHDTSKNLARKVNKQLAKYGSGGDANPEICNLARKCVVAIRPSRVLDLFSKIPTQDLPLLLMPFDSEWFSHPRNLIIERIPVSPSALRPSVISEVKNGTNEDDLTQMYQWILAQAATLEEDLSEPDWIASFDNLHSEIARLINSQHSGLPLVHEHKFMRGLLQRLSGKHGRFRGNLLGKRTNFTARTVISPDPNLRIDEVCIPDHCAKLLTYPERVTQFNLEFLRALVLNGPYKHPGALFVRYKAYNSKSDQSAKE------PDVVKKFLASLKVRESVAKALRVGDIVDRHLIDGDIVLFNRQPSLHRVSMQAFKVVVMSNRTFRFNPCCCPPFNADFDGDEMNVHLPQTEEARAEAKHLMLSLRNIASPKNGEPLISPIQDLITATHMLTLKDVFFTFDQACQLTCQLVAGSQIGREIQLPTPAILWPVKLWTGKQIFSLVISPH----PSN-----EVKINLRVPTKSIYTNRQEELCPNDGFVVIDNSELLAGCMDKKLLGSGSKSSIFYSILRDFGGEACADAMWRLSRISLFYLSHRGFSIGIEEVTPDAKLVAAKQKLISQGFAKCDHYIHQYETNTLSCNPGCSTEETLEANISQELSNIRDEAGSACKRTLHPSNSPLVMAQSGSKGSFLNISQMIACVGQQIIGGRRIPDCLNGTRSLVHFLPGSRTPAAKGFVSNSFYSGLTPYEFFFHAMSGREGLTDTAVKTADTGYMQRRLVKFLEDLTVTYDGTVRDSRGDIVQFRYGSDGLDPGEMEVENFPADLKRELANIKGISPCRSEPSMTASEVEIAINAALNLP--AFKNVDEALPTYIKTFFMKNVLPQMRSARGVRMAEVTEGVEAEPHRLTRTQLRLFLMRVKKKFERAFIEPGTAVGALCGQSIGEPATQMTLKTFHFAGVASMNITQGVPRMREIVNAVANIHTPLLSVTITDPTSASLARRVKLLIEPTRLADIALRLRQCLSPDEVCVRVELDVKRMARREITAVQVANAVRNASWTTRRLKLSRVTFSDTHLTIYPADMNRLELLVQMLEVVVVKGIPGVSRVVIQEDKDGRHNIFVEGAKLREVMCVPGVVPEATRSNNILEVERCLGVEAARRVVMDELIAVMQGHGVEVNIRHVMLLADLMANRGEIYGYQRSGMAKAKNSVLCLASFERTGDHLFEAAYHAQDDVLAGVTESIIVGNPTRIGTG 1356

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Match: A0A3Q0KQV6 (DNA-directed RNA polymerase subunit OS=Schistosoma mansoni OX=6183 PE=3 SV=1)

HSP 1 Score: 1064.68 bits (2752), Expect = 0.000e+0
Identity = 594/1376 (43.17%), Postives = 861/1376 (62.57%), Query Frame = 1

Query:   10 MKSLVRPGTEDKAVCAIEFGINSIEDIVQQSHVKVTNHDIY---DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKY----ALXXXXXXXXXXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGM--SNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRM----------QIGDNK----LHDMHSEYARMIKPDATCIRSVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDY--------TYNEPALDNEIQYILKEFLDSHERKFENLDENLVKTL-----------------SDYYNSTEGLVFGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVIIQSQLLACSTGMFFY--LHLNNVKMNQLAILPEDVEKALKSVKIQNNAV-RVVYKETGRVYIEVFSEKKINCQKVLKVIGKVQIMGVKNVKRTVIQRNEQNRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
            M SL +P    + V  I+F + S  D+ + SHV+V    +Y    +  +  + GL+D R+G     + C TC  + + C+GH+GY DL   ++  G+   IVKIL+ ICKTC  +LL E            P+L Y+ KK +R  I K SS++  C FC+  NG V K  SLS + H  +    A  ++    F +    + ++  ++  G+ ++RP    +LF  IP +    L M   ++      NLI + +PV P  IRPS  +   + + EDD+T + +            IG+      L ++H+E+AR+I    + +  V+D K +RG++QRLAGK GRFRG+++GKRTNFT+RTVISPDP+++I+E+ IP +CA  LT+ E  T +N+  L+ L+LNG   YPGA+ + S  +  E ++   Q +   NS+V+   L +E+ R + A+ L+ GD V+RH+   DIVLFNRQPSLHR+S QAF  VVK  +TF FNPCCC PFNADFDGDEMN+H PQT  A+AEA  L+ S+KN  SP +GEPL +P+QD++TA +LLT KD F N  +   L   ++      +++ +P+P I+ PV L++GKQ+  L++SP+ +        +P   +       S+    + PND  V+I NS+L+ G + KKLLGGGSK SIF+ +L+D G  A   +M RL +IAL  L  RGFS+G+ +V PS+ L   +  L+ + FA C+++I  Y+  +L+ +PGCS+E+TLES IS +LSKIRDE G  CK  LH  NSPL+MA  GSKGS++NISQM+ CVGQQ+I GKRV ++    R+L+++P   R+P +KGFV NSFYSGL+P EF FHAMSGREGL DTAVKTA+TGYMQRRL+KFLEDLA+ +D+TVRD  G+++QF+YG+DG DP ++E+   P +F KE+ H    Y        +  E  L  E+ + L  F     R    + E +  ++                 S+  N  E L    TR+Q+++F+ +  +KY KA+IEPGTA+G +CGQSVGEPATQMTLKTFHFAGVASMNIT+GVPRM+EI+NA A IKTP+I V LTD    S A+ ++L I+P  L ++ +   L  C T  + Y  + L+  +M++  I    V  A+++ K++   + RV Y +    YI V+       + V+K++  V + G+  V R VIQ+ ++  H I+VEG +L ++  I GV    T SN+ILE+ +VLG++AA+ ++I+EL AVM  H +  ++RHVMLLAD+M   G++CG+QR+G++K+KNSVLCLASFE+T DHL EAAYH Q D+L G+++++  G  T +GTG
Sbjct:    1 MPSLYKPPDLPRIVENIKFQLCSEGDLKRLSHVQVLKCLLYAEGQSNRRALDYGLLDPRLGANKRDELCATCGLDYQTCIGHWGYFDLPTPIYHVGYTWHIVKILQTICKTCSRVLLPEQQRARFSISCSNPSLDYVHKKQLRKAIHKLSSRVHVCPFCSALNGVVTKGTSLSYVVHDIFRHAKAKVDEYVNEFAKVITENTDLAPVVRKGLEIIRPGKALQLFSKIPEEDLPLLLMPFDSQWTTHPRNLIVQRVPVCPSAIRPSVVSEVRSGTNEDDLTQMYQWILAQAATIEEDIGEADQIACLDNLHAEFARLINSQQSGLPPVQDHKFMRGLLQRLAGKHGRFRGSLLGKRTNFTARTVISPDPNMRIDEVCIPVHCAKLLTYPERVTDFNLNFLRSLVLNGPNNYPGAM-FVSYKLRGERKR---QAEASGNSDVVKRFLASERAREDVAKYLQSGDIVERHLLDDDIVLFNRQPSLHRVSIQAFRAVVKPFRTFRFNPCCCTPFNADFDGDEMNIHLPQTEAARAEAKHLMLSLKNIVSPKNGEPLISPIQDLITATHLLTLKDVFLNRDQACTLAAQLLAGNHLGRLLSLPKPAILWPVALWTGKQIFGLILSPHPSTGIKVNLRVPTKSM------YSSKGQEMCPNDGFVLIQNSELLAGCVDKKLLGGGSKSSIFYTLLRDYGREACADAMWRLGRIALFFLAHRGFSIGLGEVMPSSDLVASKTALISRGFATCDDYINQYQMNTLVCNPGCSMEDTLESNISQELSKIRDEAGAACKRQLHPSNSPLVMAQSGSKGSFLNISQMIACVGQQVIGGKRVPDVI-NGRSLVHFPPGSRTPEAKGFVGNSFYSGLSPSEFFFHAMSGREGLTDTAVKTADTGYMQRRLVKFLEDLAVAYDDTVRDSRGDIIQFRYGSDGLDPLEMETDTFPVNFVKEMEHIRTSYDCPHEVGMSAEELELAVEVVFQLDAFRHLDSRLCSAIKEFIHNSVCPRIRKWQEWCTEHANGSNLINQNERL----TRTQLRIFLTHVKEKYEKALIEPGTAVGALCGQSVGEPATQMTLKTFHFAGVASMNITQGVPRMREIVNAAARIKTPLICVTLTDPFSASLARQVKLSIEPTRLADISLS--LSQCLTPEYVYVAIKLDKKRMDRRGITTPQVATAIQTTKLKKTKLSRVTYSKD---YIFVYPVDLNALETVVKLVEDVIVKGIPGVSRVVIQQ-DKGEHIIFVEGARLREVMCIPGVVAERTRSNNILEVEQVLGVEAARRVVIDELLAVMEGHGVEVNVRHVMLLADVMTNKGEVCGYQRTGMAKAKNSVLCLASFERTGDHLFEAAYHCQDDQLTGVTENIILGNPTRVGTG 1355

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Match: polr3a (polymerase (RNA) III (DNA directed) polypeptide A [Source:ZFIN;Acc:ZDB-GENE-050208-103])

HSP 1 Score: 852.818 bits (2202), Expect = 0.000e+0
Identity = 541/1397 (38.73%), Postives = 773/1397 (55.33%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIY--DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKY--------ALXXXXXXXXXXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPDATCIR----------------SVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDYTY-NEPALD-NEI----QYILKE---------FLDSHERKFENLDENLVKTLSDY----YNSTEGLVF----GITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNV--IIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIG----KVQIMGVKNVKRTVIQRNEQN---RHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSD 4047
            K +  I FG+ S E + QQ+H++V + ++Y  D    P   G++D RMGT    + C TC +    C+GH+GY+DL    F  G+ K  + IL+ ICKTC  I+L++ +       LR+P L Y+QK+ ++  I  K  K   C +C+  NG VKK   L +I H+KY         +     + F+    +++E+++LL+     L P  V  LF+ IP +    L M N +  K ++LI   + VPP+CIRPS           DD+T+ L   I  N   K H M     +MI  D   ++                ++  KK  RG +QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L+I+E+++P + A  LT+ E     NI  ++KL+ NG   +PGA            QQ   Q+K  +       K  N   R + A++LK+GD V+RH+   DIVLFNRQPSLH+LS  A  +        S NP   N               P+  +A            N  +P +GEPL A +QD LT AYLLT KDTF++  +   ++  I+        V +PRP I+KP++L++GKQ+ SL++ P       S+     + +    +      + L  ND+ VVI NS+L+ G L K  LG GSK +IF+ +L+D G L +  +M RL ++A   L +RGFS+GI DV+P   L   ++EL++  +  C+E+I+    G L   PGC+ EETLE+ I  +LS IRD  G  C   L K NSPLIMA+CGSKGS+INISQM+ CVGQQ I G RV +    NR+L ++ ++ + P +KGFV++SFYSGL P EF FH M+GREGL+DTAVKTAETGYMQRRL+K LEDL  ++D TVR  TG+++QF YG DG DP+ +E    P +F + L +    YT  NEPAL  NE+      I+K          FL   ++    + E + KT   Y      STE  V      IT +Q++ F++ C  KY +A +EPG+A+G +C QS+GEP TQMTLKTFHFAGVASMNIT GVPR++EI+NA  NI TPIIT +L  +    FA+ ++ +I+   L  +   I    L     +   L L  +++ +L +  E V  ++   K++     +       V +      K +   VL+ +     KV + G+  V R VI  ++Q+   +  + VEG  L  +    GV+G  T SN+  E+ + LGI+AA+  IINE+   M  H ++ D RHVMLLAD+M Y G+I G  R G++K K SVL LASFEKT DHL +AAY  QKD + G+S+ +  G    IGTG+  ++     +    RRP L D
Sbjct:   13 KKISHICFGMKSAEQMRQQAHIQVVSKNLYSQDTSHTPLSYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYLDLELPCFHIGYFKATIGILQMICKTCSRIMLSKEERQQFLDYLRRPGLAYLQKRGLKKKISDKCRKKNVCLYCSAFNGPVKKCGLLKII-HEKYKTTKKVVDPIVSDFLQSFDIAIEHNKEVESLLSRAQENLNPLVVLNLFRRIPNEDVPLLLM-NPEAGKPADLILTRLLVPPLCIRPSV----------DDLTMKLTEIIFLNDVIKKHRMSGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVKNGPDVHPGANFI---------QQRHMQMKRFL-------KYGN---REKMAQELKLGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIV--------SSNPYIQNN--------------PKATKA------------NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIVASILVGKDEKIKVTLPRPAIIKPMRLWTGKQIFSLILKP-------SQSCPVKANLRTKGKQYCGKGEDLCSNDSFVVIQNSELLCGSLDKGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKQELLDAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILRELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD-GFENRSLPHFEKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYTCPNEPALSKNELVLTTDSIMKRTDFACCRDTFLQEIKKFISGVSEKIKKTRDKYGINDNGSTEPKVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHLDTEDDADFARLVKGRIEKTLLGEISEYIDEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDIAVHGEAVVCVSPRENSKSSMYYVLQWLKQELPKVVVQGIPEVARAVIHIDDQSGRQKFKLLVEGDNLRAVMATHGVNGSRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHRADKDPTPPRRPLLFD 1336

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Match: polr2a (RNA polymerase II subunit A [Source:NCBI gene;Acc:103029187])

HSP 1 Score: 391.734 bits (1005), Expect = 2.551e-112
Identity = 272/792 (34.34%), Postives = 417/792 (52.65%), Query Frame = 1

Query:  625 LLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSA--QTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPD--------ATCI--------RSV-KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE----STYCPCD--FTKELYHALQDYTYNEPALDNEIQY-ILKEFL------DSHERKFENLDEN 2895
            LL P  V ++F+ I  +    LGM + K  +   +I   +PVPP+ +RP+   Q S+ N   +DD+T  L   +  N   + ++     A +I  D        AT +        R++ K  + ++ + QRL GK+GR RGN+MGKR +F++RTVI+PDP+L+I+++ +P   A  +TF E  T +NI  L++L+  G  +YPGA                 +  +  N +    ++D       +   L++G  V+RH+   DIV+FNRQP+LH++S     + +    TF  N     P+NADFDGDEMN+H PQ+ E +AE  EL    +   +P S  P+   +QD LTA    T +D F    E  NL++ +           +P+P I KP  L++GKQ+ SL+I       P    VI  +      +  S P  +++P DT V++ N +LIMG L KK LG  +   +    L+   D+        +  +    L   G S+GI D    AK     +  +++      E I+   N  L   PG ++ +T E++++  L+  RD+ G   + +L + N+   M + GSKGS INISQ++  VGQQ +EGKR+      +RTL ++ ++   P S+GFV NS+ +GL P EF FHAM GREGLIDTAVKTAETGY+QRRLIK +E + +++D TVR+    +VQ +YG DG     +E    +T  P +  F K+      +YT NE AL   +Q  +LK+ +       S ER+FE + E+
Sbjct:  213 LLSPERVHEIFKRISDEEDLILGM-DPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARN---QDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGA-----------------KYIIRDNGD----RIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWD-----GKVPQPAIHKPRPLWTGKQIFSLII-------PGHINVI-RTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRL-FYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIP-FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESIMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSNKAFEKKFKF---EYT-NERALRRTLQEDVLKDVMTNAHVQSSLEREFEKMRED 960

HSP 2 Score: 88.9669 bits (219), Expect = 3.491e-17
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 1

Query: 3580 IYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
            +  +G  L+ +   + VD + T SN I+EI+ VLGI+A +  +  EL  V+       + RH+ LL D M   G +    R GI++     L   SFE+T+D L+EA+ H + D + G+S+++  G+  P GTG
Sbjct: 1334 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTG 1467

HSP 3 Score: 86.2705 bits (212), Expect = 1.987e-16
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1

Query: 2944 FGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYL 3201
            F ++    +  +     K+ ++I  PG  +G +  QS+GEPATQMTL TFH+AGV++ N+T GVPR++E++N     KTP +TV+L
Sbjct: 1056 FRLSTEAFEWLLGEIEAKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFL 1141

HSP 4 Score: 70.8626 bits (172), Expect = 1.213e-11
Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = 1

Query:   28 PGTEDKA-----VCAIEFGINSIEDIVQQSHVKVTNHDI-YDNL---AKPAENGLMDQRMGTCS-STKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEH-----DVMSHEKELRKPNLTYI 408
            P T D A     +  ++FGI S +++ + S   VT   I Y       +P   GLMD R G    S +C TC      C GHFG+I+L+  +F  GF+  I+K+L+C+C  C  +L++ +     D++S  K   +  LT++
Sbjct:    4 PPTSDSACPLRLIKRVQFGIISPDELKRMS---VTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDANNPKIKDILSKSKGQPRKRLTHV 142

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Match: polr2a (RNA polymerase II subunit A [Source:NCBI gene;Acc:103029187])

HSP 1 Score: 390.578 bits (1002), Expect = 7.609e-112
Identity = 272/792 (34.34%), Postives = 417/792 (52.65%), Query Frame = 1

Query:  625 LLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSA--QTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPD--------ATCI--------RSV-KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE----STYCPCD--FTKELYHALQDYTYNEPALDNEIQY-ILKEFL------DSHERKFENLDEN 2895
            LL P  V ++F+ I  +    LGM + K  +   +I   +PVPP+ +RP+   Q S+ N   +DD+T  L   +  N   + ++     A +I  D        AT +        R++ K  + ++ + QRL GK+GR RGN+MGKR +F++RTVI+PDP+L+I+++ +P   A  +TF E  T +NI  L++L+  G  +YPGA                 +  +  N +    ++D       +   L++G  V+RH+   DIV+FNRQP+LH++S     + +    TF  N     P+NADFDGDEMN+H PQ+ E +AE  EL    +   +P S  P+   +QD LTA    T +D F    E  NL++ +           +P+P I KP  L++GKQ+ SL+I       P    VI  +      +  S P  +++P DT V++ N +LIMG L KK LG  +   +    L+   D+        +  +    L   G S+GI D    AK     +  +++      E I+   N  L   PG ++ +T E++++  L+  RD+ G   + +L + N+   M + GSKGS INISQ++  VGQQ +EGKR+      +RTL ++ ++   P S+GFV NS+ +GL P EF FHAM GREGLIDTAVKTAETGY+QRRLIK +E + +++D TVR+    +VQ +YG DG     +E    +T  P +  F K+      +YT NE AL   +Q  +LK+ +       S ER+FE + E+
Sbjct:  213 LLSPERVHEIFKRISDEEDLILGM-DPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARN---QDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGA-----------------KYIIRDNGD----RIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWD-----GKVPQPAIHKPRPLWTGKQIFSLII-------PGHINVI-RTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRL-FYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIP-FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESIMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSNKAFEKKFKF---EYT-NERALRRTLQEDVLKDVMTNAHVQSSLEREFEKMRED 960

HSP 2 Score: 88.5817 bits (218), Expect = 3.981e-17
Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = 1

Query: 3586 VEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
             +G  L+ +   + VD + T SN I+EI+ VLGI+A +  +  EL  V+       + RH+ LL D M   G +    R GI++     L   SFE+T+D L+EA+ H + D + G+S+++  G+  P GTG
Sbjct: 1336 TDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTG 1467

HSP 3 Score: 86.2705 bits (212), Expect = 2.465e-16
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1

Query: 2944 FGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYL 3201
            F ++    +  +     K+ ++I  PG  +G +  QS+GEPATQMTL TFH+AGV++ N+T GVPR++E++N     KTP +TV+L
Sbjct: 1056 FRLSTEAFEWLLGEIEAKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFL 1141

HSP 4 Score: 70.8626 bits (172), Expect = 1.207e-11
Identity = 45/142 (31.69%), Postives = 72/142 (50.70%), Query Frame = 1

Query:   28 PGTEDKA-----VCAIEFGINSIEDIVQQSHVKVTNHDI----YDNLAKPAENGLMDQRMGTCS-STKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEH-----DVMSHEKELRKPNLTYI 408
            P T D A     +  ++FGI S +++ + S   VT   I         +P   GLMD R G    S +C TC      C GHFG+I+L+  +F  GF+  I+K+L+C+C  C  +L++ +     D++S  K   +  LT++
Sbjct:    4 PPTSDSACPLRLIKRVQFGIISPDELKRMS---VTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDANNPKIKDILSKSKGQPRKRLTHV 142

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Match: ENSAMXT00000011874.2 (pep primary_assembly:Astyanax_mexicanus-2.0:24:12476100:12482137:1 gene:ENSAMXG00000011553.2 transcript:ENSAMXT00000011874.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 113.235 bits (282), Expect = 2.483e-25
Identity = 71/168 (42.26%), Postives = 98/168 (58.33%), Query Frame = 1

Query: 2311 LHK---RNSPLIMAICGSKG-SYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSK---LESTYCPCDFTKELYHALQ 2793
            LH+    N+  +M   G+KG S I IS ++   GQ  +EG+R   +        + P     P S GFV+  F +G+ P EF FH M+GREGL+DTAVKT+ +GY+QR +IK LE L +++D TVRD  G++VQF YG DG D  K   L+    P  F KE Y  ++
Sbjct:   26 LHRSFPENNLQLMVQSGAKGRSNICISCLL---GQIELEGRRPPLMPSGKSLPCFQPYEA-EPRSGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPRQFP--FIKENYEVIR 187

HSP 2 Score: 87.0409 bits (214), Expect = 4.249e-17
Identity = 36/68 (52.94%), Postives = 55/68 (80.88%), Query Frame = 1

Query: 2995 KYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMN-AVANIKTPIITV 3195
            K+ +A+ +PG A+G++  QS+GEP+TQMTL TFHFAG   MN+T G+PR++EI+  A +NIKTP++++
Sbjct:  343 KWQRALCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLIASSNIKTPMMSI 410

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Match: ENSAMXT00000011881.2 (pep primary_assembly:Astyanax_mexicanus-2.0:24:12464356:12466989:1 gene:ENSAMXG00000011559.2 transcript:ENSAMXT00000011881.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 56.225 bits (134), Expect = 8.356e-8
Identity = 31/94 (32.98%), Postives = 50/94 (53.19%), Query Frame = 1

Query:   55 AIEFGINSIEDIVQQSHVKVTNHDIYDNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTC 333
             + FG+ S E+I + S   +TN  + DN+   A NGL D  +G   S + C TC ++  +C GHFG+IDL   ++       +  I++  C +C
Sbjct:   14 GMSFGMYSTEEIRKLSVKSITNSILLDNVGTAAPNGLYDLALGPADSKEICTTCMQDFTHCPGHFGHIDLHLPVYNPLLFDKLYLIIRGSCLSC 107

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Yeast
Match: RPO31 (RNA polymerase III largest subunit C160; part of core enzyme; similar to bacterial beta-prime subunit and to RPA190 and RPO21 [Source:SGD;Acc:S000005642])

HSP 1 Score: 872.463 bits (2253), Expect = 0.000e+0
Identity = 543/1462 (37.14%), Postives = 806/1462 (55.13%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIYDNLAK---PAENGLMDQRMGTCSST-KCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKL-------------KSLSMICHKKYALXXXXXXXXXXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGM-SNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLR--------MQIGDNK---LHDM--HSEYARM----------IKPDATCIRSVKDKKV--IRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIV---ETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHA-----------LQDYTYNEPALD------------------------NEIQYI------------LKEFLDSHERKFENLDENLV------------------KTLSDYYNSTEGLVFGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVIIQSQLLACSTGMFFYLH--LNNVKMNQLAILPEDVEKAL---KSVKIQNNAVRVVYKETGRVYIEVFSE----KKINC--------------QKVLKVIGKVQIMGVKNVKRTVIQRNEQNRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDS-SEKDL 4023
            K +  +EF   S  DIV QS V+V+  D++D L K   P  NG +D +MG  SS+ +C TC      C GHFG++ L+  +F  G+ K  ++IL+ ICK C  ILL+E D      ELR+P +  +++  I   I+ +  K RRC  C   NG VKK               +   +  K    K+     +++   ++ E++  +   +  L P     LF+ I     + LG+ +   + +    I++++P PP+CIRPS        S EDD+T+ L         ++ G +K   +++M  H +Y ++          + P      S    KV  IRG  QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L I+E+++P+  A  LT+ E  T YN   L++LI+NG   +PGA       + K  +     L+                 R++ A+ L++GD V+RH++  D+VLFNRQPSLHRLS  +    ++  +TF  N C C P+NADFDGDEMN+H PQT EA+AEAI L+    N  +P SGEP+ A  QD +T +YL++ KD+FY+      L+  +       +   IP P IMKP  L++GKQ+ SL+I P    + +S  VI     N++    ++ S P + ++ ND  V+I  S+++ G + K +LG G K S+F+ IL+D G   +  +M R+ ++    L +RGFS+GI DV+P+  L+  ++ELVE  +  C+E I  +  G L + PGC+ E+TLE+KI   LSK+R+E G  C   L   N+PLIMA CGSKGS +N+SQMV  VGQQII G RV +    +R+L ++P+N ++P SKGFV NSF+SGL+P EFLFHA+SGREGL+DTAVKTAETGYM RRL+K LEDL+ ++DNTVR     +VQF YG DG DP ++E    P +F +   HA           L  Y   E A +                        N+ +Y+            L+E+++       NL ++                    +T+ D   ++   ++ I+   ++ F++    KY KA +EPGTAIG I  QS+GEP TQMTLKTFHFAGVASMN+T GVPR++EI+NA   I TPII   L +D  E  A+ ++ +++   L +V    Q +      F  +   L  +   QL +  ED+  A+     +KIQ + V ++ K+  R+ I VF E    K I+               Q++ + +  V + G+ ++ R VI   +  +  + VEG  L D+   +GV G  T +NH+LE++ VLGI+AA+  II E+N  M  H ++ D RH+ LL D+M Y G++ G  R G+SK ++SVL LASFEKT DHL +AA++ +KD + G+S+ +  G+T  IGTG   ++   + SEKDL
Sbjct:   11 KRIKGLEFSALSAADIVAQSEVEVSTRDLFD-LEKDRAPKANGALDPKMGVSSSSLECATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVKKAAAGAGSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGA-----NYLLKRNEDARRNLRYGD--------------RMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGI---EHFDIPPPAIMKPYYLWTGKQVFSLLIKP----NHNSPVVINLDAKNKVFVPPKSKSLP-NEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPD-GFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEGNAQPVNFNRSWDHAYNITFNNQDKGLLPYAIMETANEILGPLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYINGKATALANLRKSRGMLGLLEPPAKELQGIDPDETVPDNVKTSVSQLYRISEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVAFYVQDVYKDNLSFIQVRIDLGTIDKLQLELTIEDIAVAITRASKLKIQASDVNIIGKD--RIAINVFPEGYKAKSISTSAKEPSENDVFYRMQQLRRALPDVVVKGLPDISRAVINIRDDGKRELLVEGYGLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVVKGTNISEKDL 1441

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Yeast
Match: RPA190 (RNA polymerase I largest subunit A190 [Source:SGD;Acc:S000005868])

HSP 1 Score: 399.438 bits (1025), Expect = 2.258e-116
Identity = 326/1007 (32.37%), Postives = 504/1007 (50.05%), Query Frame = 1

Query:  586 SQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSN--KKNIKVSNLIFKHIPVPPICIR-PS--AQTSSENTSRE----------------DDITILLRMQIGDNKLHDMHSEYARMIKP------------DATCIRSVKDKKV-IRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAV-------AYASGI-ISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNI-VVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPP-------NKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPV--DYLNPN--DTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSA---KLRT-IQKELVEQNFAICEEFIKYYENGSLISDPGC--SIEETL---------ESKISSQLSKIRDEGGKEC--KTTLHKR--NSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDYTYNEPAL------DNEIQYILK------------------------------EFLDSHERKFENLDENLVKTLSDYYNSTEGLVFGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEI-MNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVI 3276
            S E+KN+L++         VF+  Q   V  Y F    N  +K +K  +     + VPP   R PS   +   EN+  +                DD++ L + ++    L D    ++R++              D+T  +     KV I G+ Q L  K+G FR ++MGKR N+ +R+VISPDP+++ NEI +P   A+KLT+ E  TAYNIA L++ ++NG  K+PGA        +  S I +S E ++ ++   L  +S V    L+ +               V RHI + D+VL NRQP+LH+ S     + V+  EKT   +      +NADFDGDEMN+HFPQ   A+AEA+ L ++     +P SG P+   +QD ++A   LTSKD+F+  ++++  I     C  P       +KIV +P P I KP  L++GKQ+++ V+       PD    +P   IN I   S N +  +Y      +  V+  +  L+ G L  K   G SK  I   + +  G   + + +  L ++    + +  F+ G+ D+  +A   K RT I K  V+       E +   +  +   DP     ++E L         ++  SS+++ I  +   +C    T+ K   NS   MA+ G+KGS +N+SQ++  +GQQ +EG+RV  +  + +TL  +       M+ G+V   FYSG+ P E+ FH M+GREGLIDTAVKT+ +GY+QR L K LE + + +DN++RD  G LVQF YG D  D +K ES     +F  + Y+AL    YN  AL      ++ ++Y  K                              ++L S    F++  E+ +   S  + S++G+     R+ M+L       KY +++I PG A+G+I  QSVGEP+TQMTL TFHFAG  + N+T G+PR++EI M A A IKTP +T+ + +DV +  A T    I  V L  VI
Sbjct:  317 STEVKNILDT---------VFRKEQC--VLQYVFHSRPNLSRKLVKADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLIRDLNDDLSKLQKDKVS---LEDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKK---------------VYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIY---GCIRPEDGHTTRSKIVTLP-PTIFKPYPLWTGKQIITTVL--LNVTPPD----MPG--INLI---SKNKIKNEYWGKGSLENEVLFKDGALLCGIL-DKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAE-VTNLDKDTPADDPELLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVP-VMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGGDAIDITK-ESHMTQFEFCLDNYYALLK-KYNPSALIEHLDVESALKYSKKTLKYRKKHSKEPHYKQSVKYDPVLAKYNPAKYLGSVSENFQDKLESFLDKNSKLFKSSDGVNEKKFRALMQL-------KYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVSDEQADTFCKSISKVLLSEVI 1267

HSP 2 Score: 77.0258 bits (188), Expect = 1.737e-14
Identity = 50/176 (28.41%), Postives = 88/176 (50.00%), Query Frame = 1

Query: 3463 SEKKINCQKVLKVIGKVQIMGVKNVKRTVIQRNEQNRHNIYVEGGKLLDLFQIEG---VDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
            +EK +    V ++  K  I  + ++ R V    E  +  +  EG     ++  E    VDGI   SN +  + +  G++AA++ I+NE+N V   + ++   RH+ L+AD+M   G    F R G+  S +S + + S+E T   L +A   N++++L   S  +  GK   +GTG
Sbjct: 1480 TEKLLMVNIVEEICRKSIIRQIPHIDRCVHPEPENGKRVLVTEGVNFQAMWDQEAFIDVDGIT--SNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGMETSTSSFMKM-SYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTG 1652

HSP 3 Score: 64.3142 bits (155), Expect = 1.467e-10
Identity = 34/113 (30.09%), Postives = 56/113 (49.56%), Query Frame = 1

Query:   49 VCAIEFGINSIEDIVQQSHVKVTNHDIYDNLAKPAENGLMDQRMGTCSSTKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELR 387
            + +++FGI + ++I   S  ++TN  + DNL  P   GL D  +G      C TC  ++K+C GH G+I+L    +   F   +   L+  C  C H  L   +V  +  +LR
Sbjct:   11 ITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLRNLCSTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLR 123

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Yeast
Match: RPO21 (RNA polymerase II largest subunit B220; part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime [Source:SGD;Acc:S000002299])

HSP 1 Score: 375.941 bits (964), Expect = 3.004e-108
Identity = 226/611 (36.99%), Postives = 339/611 (55.48%), Query Frame = 1

Query:  919 KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGA--VAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITD-VSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE 2742
            K  + ++ +  RL GK+GR RGN+MGKR +F++RTVIS DP+L+++++ +P+  A  LT+ E  T YNI  L +L+ NG  ++PGA  V   SG                        ++D    +     +L+ G  V+RHI   D VLFNRQPSLH++S  A  + V    TF  N    +P+NADFDGDEMN+H PQ+ E +AE  +L +      SP S +P    +QD L     LT +DTF    +  N++  +     P+   +IP P I+KP  L+SGKQ++S+ I P G              + +  E ++     L+P D  ++I + ++I G + KK +G  +   I   + ++ G     +    + ++    L   GFS GI D ++    +R I + + E    + +   K  +   L +  G ++ E+ E  +   L++ RD+ G+  +  L   N+   M + GSKGS+INI+QM  CVGQQ +EGKR++     +RTL ++ ++  SP SKGFV NS+  GL P EF FHAM GREGLIDTAVKTAETGY+QRRL+K LED+ + +DNT R+  GN++QF YG DG D + +E
Sbjct:  317 KSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSG-----------------------DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWV-----PDWDGVIPTPAIIKPKPLWSGKQILSVAI-PNGI------------HLQRFDEGTT----LLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHV-VTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLD-VTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIA-FGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIE 879

HSP 2 Score: 167.933 bits (424), Expect = 2.766e-42
Identity = 110/417 (26.38%), Postives = 196/417 (47.00%), Query Frame = 1

Query: 2944 FGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDD--VRESFAKTMQLKIQPVFLKNVIIQSQL--------------------------------LACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGR----VYIEVFSEKKINCQ------KVLK-----VIGKVQIMGVKNVKRTVIQRNEQN------------RHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSS 4011
            + +T+      + N   ++ ++++ PG  +GV+  QS+GEPATQMTL TFHFAGVAS  +T GVPR++EI+N   N+KTP +TVYL       +  AK ++  I+   LK+V I S++                                    +     L L+   MN   +    V + +K  +   N + V++ E       +   V   K ++ +       +LK     ++  + + GV+N++R V+ + ++                +  +G  L ++  + G+D    ++N  ++I EVLGI+A +  +  E+  V+ +     + RH+ LL D+M   G +    R G ++S    L   SFE+T++ L EA    + D   G+S+++  G+  PIGTG   ++ ++ S
Sbjct: 1035 YRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIK--QTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEES 1449

HSP 3 Score: 76.6406 bits (187), Expect = 2.459e-14
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIYDNLAKPAE-NGLMDQRMGTCS-STKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHD 360
            + V  ++FG+ S E++   S  K+   +  D     A+  GL D R+G+   + KC TC      C GHFG+IDL+  +F  GF+  I K+ +C+C  CG +LL+EH+
Sbjct:   12 RTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHN 119

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Match: EDO36291 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7SJ34])

HSP 1 Score: 937.562 bits (2422), Expect = 0.000e+0
Identity = 555/1406 (39.47%), Postives = 800/1406 (56.90%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIY--DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKYALXXXXXXXXXXXXNYS--------QEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFL----GMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDNKLHDMHSEYA---RMIKPDATCIR----------------SVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSK-RVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDYTYNE--PALDNEIQYILKEFLDSHERKF-------------ENLDENLVKTLSDY--------YNSTEGLVFGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVI--IQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKAL---KSVKIQNNAVRVVYKETGRVYIEVFSEKKIN--CQKVLKVIGKVQIMGVKNVKRTVIQ------RNEQNRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSD 4047
            K +  I FG+ S E + Q SH++  + ++Y  DN   P   G++D  MGTCS  + C TC +    C+GH+GYIDL   +F  G  +  + IL+C+CK C  +LL   +       L+KPN++ + KK ++  I++K  KI  C +C D NG V+K+  L  I H+KY    +           S        +E+  LL     +L P  V  +FQ IP + Y  L    GMS+  +     LI + I  PP+CIRPS  +   + S EDD+T+ L   +  N +   H       +MI  D   ++                +++ KK  RG +QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L+I+++++P + A  LT+ E  T  N+  +K+L+LNGA ++PGA            QQ  +  K  +       K  N K     A++LK+GD V+RH+   D+VLFNRQPSLH+LS  A    V+  +TF FN C C P+NADFDGDEMN+H PQT EAKAEA+ L+    N  +P +GEPL A +QD +T AYLLT KD F +      L   I+        + +P P I KP +L++GKQ+ S+++ P    +P  K R+   +R  Q           L  ND+ VVIHNS L+ G L K +LG GSK S+F+ +L+D G   +  +M R+ +I    L +RGFS+GI DV+P   L   +++L+   ++ CE++I  +  G L + PGCS E+TLE+ I  +LS IRD  GK C   LHK N+PL MA+CGSKGS+INISQM+ CVGQQ I GKR+ +    +R+L ++  + + P +KGFV NSF+SGL P EF FHAM GREGL+DTAVKTAETGYMQRRL+K LEDL+ ++D TVR  TG++VQF+YG DG DP+ +E    P DF++   H   ++   E  P   +  + I K  ++S E +              ENL + + K  + Y         N     V   T +Q+KLF+  C +KY +A +EPG+A+G IC QS+GEP TQMTLKTFHFAGVASMNIT GVPR++EI+NA   I TPII+  L DD  +  A+ ++ +I+   L  V   I+   L  +  +   L    +++ +L +  + ++ A+   + +++  + VRV       VY    ++  ++   Q++   +  V I G KNV R +I       R  +  + + VEG  L  +    GV G  T SN+ +E+  VLGI+AA+  I+NE+   M  H ++ D+RHVMLLA++M + G+I G  R G++K K SVL LASFE+T DHL EAA H +KD + G+S+ +  G    IGTGM  ++   +   D  RRP + D
Sbjct:   13 KKISHINFGMFSPEQMQQYSHLQCISKNLYNQDNTRTPVPYGVLDPHMGTCSKDRMCETCGKGLADCVGHYGYIDLELPVFHVGHFRSTIIILQCVCKNCCRVLLPPAEKKQFLDTLKKPNISSLAKKGMKKKIVEKCKKISHCPYCEDLNGFVRKV-GLMKIVHEKYKTTRKIVDPIISDFQSSFDVALENNKELSPLLPKAQEVLNPLRVLDIFQQIPEQDYPLLMFSPGMSHPHD-----LIMRRILAPPVCIRPSVISELASGSNEDDVTMKLTEIVFLNDVIRKHRSVGAKVQMIMEDWDFLQLQCALYINSEMSGIPLNMQPKKGTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPIHVAKVLTYPERVTQSNLKLMKQLVLNGADQHPGANFI---------QQRETNTKRFL-------KYGNRKL---IAKQLKIGDTVERHLIDGDVVLFNRQPSLHKLSIMAHLATVRPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALTLMGVKNNLVTPRNGEPLIAAIQDFITGAYLLTYKDVFLDRSHIAQLCASILAGKDTGVDIELPPPAIHKPCRLWTGKQVFSVLLRP----NPKVKVRMNLRARGKQYTSGED-----LCVNDSFVVIHNSDLMCGALDKAVLGSGSKNSVFYVLLRDFGQQVAADAMWRVARICPFFLSNRGFSIGIGDVTPGHGLLQAKEDLLSTGYSKCEDYINEFREGKLQTQPGCSAEDTLEAVILKELSVIRDHAGKACLRELHKSNTPLTMAVCGSKGSFINISQMIACVGQQAISGKRIPD-GFEDRSLPHFKRHSKLPAAKGFVKNSFFSGLTPTEFFFHAMGGREGLVDTAVKTAETGYMQRRLVKSLEDLSTQYDITVRTSTGDIVQFRYGGDGLDPTDMEGKDKPLDFSRVFSHIQCNHVMREERPLTSSRAREIAKGIIESSEFEMCSKDFKTETSDFVENLAKKIEKIHAQYGVVPHSITSNKIVDYVNRCTETQLKLFLSMCREKYLRARMEPGSAVGAICAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASRKISTPIISAQLQDDRDQELARAVKGRIERTLLGEVTEYIEEVFLPDNCYLLIKLDTERIRLLKLEVDADTIQAAICSSRKLRLNQSQVRVHSSAVICVYPTESAKSSLHYVMQQLRSDLPGVLIKGYKNVTRAIIHIDEEQSRGGEEHYKLLVEGDDLQAVISTMGVKGNGTTSNNTIEVERVLGIEAARQTIMNEIIYTMKNHGMSIDVRHVMLLAELMAFKGEILGITRHGLAKMKESVLMLASFERTADHLFEAALHGRKDPIDGVSECIIMGMPMNIGTGMFKLLHKPTRSGDPSRRPLIFD 1383

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Match: EDO39976 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7S8F9])

HSP 1 Score: 362.844 bits (930), Expect = 4.048e-103
Identity = 221/615 (35.93%), Postives = 336/615 (54.63%), Query Frame = 1

Query:  919 KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVG-DLASCQSMERLCQIALADLKSRGFSLGITD-VSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCP 2757
            K  + ++ + QRL  K+GR RGN+MGKR +F++R VI+PDP+L I+++ +P   A  LTF E  T +NI  +++L+  G  +YPGA                 +  +  N E    ++D       +   L+ G  V+RHI   D+++FNRQP+LH++S     + +    TF  N     P+NADFDGDEMN+H PQ+ E+KAE  E++   +N  +P S +P+   +QD LTA    T +D F  +    NL++ I     P     IP+P I+KP  L++GKQ+ S++I       P +  VI  +      +  S P  +++P DT   I   K +          G S  S+   I  ++G D+A     +  C +    L   G S+GI D ++ S     IQ+   +    + E  I+   N  L   PG ++ +T E++++  L+  RD+ G   + +L + N+   M + GSKGS INISQ++  VGQQ +EGKR+      +RTL ++ ++   P S+GFV NS+ +GL P EF FHAM GREGLIDTAVKT+ETGY+QRRL+K +E L++ +D TVR+    L+Q +YG DG D   +E    P
Sbjct:  336 KSGRPLKSVKQRLKSKEGRIRGNLMGKRVDFSARAVITPDPNLSIDQVGVPRTIAQNLTFPEIVTPFNIDSMQELVRRGNNQYPGA-----------------KYIIRDNGE----RVDLRFHPKPSDLHLQFGYKVERHIRDNDVIIFNRQPTLHKMSMMGHRVKILPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLESKAEITEIMMVPRNIVTPQSNKPVMGIVQDSLTAVRKFTKRDVFIEKDAMMNLLMWI-----PTWDGKIPQPAILKPRPLWTGKQICSMII-------PGNVNVI-RTHSTHPDDEDSGPYKHISPGDTKARILCKKSL----------GTSSGSLIHIIAMELGHDIARMFYSDVQC-VVNNWLLLEGHSIGIGDCIADSDTYDEIQRATKKAKKEVIE-VIEKAHNDELEPTPGNTLRQTFENQVNRILNDCRDKTGGSAQKSLSEFNNFKAMVVAGSKGSKINISQVIAVVGQQNVEGKRIP-FGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEGLSVAYDGTVRNSNNQLIQLRYGEDGMDGIAIEFQNMP 903

HSP 2 Score: 90.5077 bits (223), Expect = 3.748e-18
Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = 1

Query: 3580 IYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
            +  +G  L+ +     VD + T SN I EI+ VLGI+A +  +  E++ V+       + RH+ LL DIM   G +    R GI++ +   L  +SFE+T+D L++AA H + D L G+S+ +  GK   IGTG
Sbjct: 1331 LETDGVSLMRVLSERDVDPVRTTSNDICEIFSVLGIEAVRKAVEREMDHVISFDGSYVNYRHLALLCDIMTCRGHLMAITRHGINRQEVGALMRSSFEETVDVLMDAAAHAETDYLRGVSECIIMGKLPRIGTG 1464

HSP 3 Score: 85.1149 bits (209), Expect = 1.915e-16
Identity = 40/118 (33.90%), Postives = 68/118 (57.63%), Query Frame = 1

Query: 2944 FGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRE--SFAKTMQLKIQPVFLKNVIIQSQL 3291
            F ++    +  +     ++  + ++PG  +G +  QS+GEPATQMTL TFH+AGV++ N+T GVPR++EI+N     KTP +TV+L          AK +  +++   L+ V   + +
Sbjct: 1054 FHLSSEAFEWLLGEIETRFNHSHVKPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLIGQAARDAEMAKAVLCRLEHTTLRKVTANTAI 1171

HSP 4 Score: 72.7886 bits (177), Expect = 1.130e-12
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIYDNL--AKPAENGLMDQRMGTCSS-TKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLN 351
            + V  ++FGI S ++I Q S          + +   +P  NGLMD R GT    ++C TC      C GHFG+I+L+  +F  GF+  IVK L+C+C  C  +L++
Sbjct:   12 RDVKRVQFGILSPDEIKQMSVTTDGGVKYSETMEGGRPKLNGLMDPRQGTIDRFSRCQTCAGNMTECPGHFGHIELAKPVFHVGFMTKIVKTLRCVCFYCSKLLVD 117

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Match: EDO39496 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7S9W9])

HSP 1 Score: 240.736 bits (613), Expect = 1.145e-64
Identity = 176/581 (30.29%), Postives = 297/581 (51.12%), Query Frame = 1

Query: 1081 AMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYAS--GIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNI-VVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNP------VDYLNPND---TLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQN-----------FAICEEFIK-----YYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKEC-KTTLHKR---NSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFD 2727
            A KLT+ +  T +N+  L++ ++NG   +PGA+   S  G   +  +  ++Q +  +   ++    DN+   +   +       V RHI + D++L NRQP+LHR S  A  + V+  EKT   +   C  +NADFDGDEMN HFPQ   A+AEA  + S+  N   P  G PL+  +QD + +  L+T +   +N+ +++ L+   +     N+ + +  P I+KP + +SGKQ++S ++     L      +   ++I+     +  P      ++ L  +D   + VVI +  L+ G L K   G      +     +  G + S + +  L ++  + L+  GF+LG+ D+  + +   I+++L+ +            F + E+  +       +     SD G  ++E L+  +  +    +D   K C    L++R   N+  +M   G+KGS +N  Q+   +GQ  +EG+R   I  + R+L  +     SP + GFV   F +G+ P E+ FH M+GREGL+DTAVKT+ +GY+QR LIK LE L + +D TVRD  G++VQF YG DG D
Sbjct:    4 AKKLTYPQPVTTWNVKELRQAVINGPLVHPGAILVESEDGKKIRLSETDVNQ-RQAIAKRLLTPSGDNKGSHVNCKK-------VYRHIQNGDVMLLNRQPTLHRPSIMAHKVRVLPSEKTIRLHYANCKAYNADFDGDEMNAHFPQNELARAEAYTIASTNFNYLVPKDGTPLSGLIQDHMVSGVLMTIRGRMFNKLDYQQLVYGALNF--KNQPIELLMPCILKPTQFWSGKQVISTILLNLIPLGSKRLNLKGKAKISAKNWNTRKPRRQFLDLEVLKGDDMSESEVVIRDGHLLCGVLDKAHYGNTPYGLVHC-CNELYGGVMSGELLSALARVFTSFLQFHGFTLGVKDILVTERADKIRRKLIAKGRVSGKDAATSAFGMPEDCHRSDLEARMQRAHHNSD-GTDMKE-LDLCMKKKTDHYQDSINKACLPLGLYQRFPGNNLQLMVQSGAKGSAVNCMQISCLLGQIELEGRRPP-IMLSGRSLPSFLPYDTSPRAGGFVDGRFLTGIRPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEGLQVAYDLTVRDSDGSIVQFYYGEDGLD 570

HSP 2 Score: 96.6709 bits (239), Expect = 4.740e-20
Identity = 93/345 (26.96%), Postives = 154/345 (44.64%), Query Frame = 1

Query: 2341 AICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSN-----------SFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGY----MQRRLIKFL-------EDLAIRFDNTVRDFTGNLVQ---FKYGTDGFDPSKLESTY------CPCDFTKELYHALQDYTYNEPALDNEIQYILKEFLDSHERKFENLDENLVKTLSDYYNSTEGLVFGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEI-MNAVANIKTPIITVYLTDDVRE-SFAKTMQLKIQPVFLKNVI 3276
            A+  S+  Y+    +    G Q+     V +  G+     YY E+    +   F+S+           +F   LNP + L H    +   +++ +   +  +     Q R   FL       E++  + D     F  +  Q   FK  T+   PS ++S Y      CP     +L     D ++   A+  +I + +  ++ +          N  K L D  + T     G+  S+ +  +   Y K  +++++PG A+G++  QS+GEP+TQMTL TFHFAG   MN+T G+PRM+EI M A ANIKTP + + L    +    AK +Q K+  V L  V+
Sbjct:  524 AVKTSRSGYLQRCLIKHLEGLQVAYDLTVRDSDGSI-VQFYYGEDGLDILKTKFLSDKQYPFMVENYMAFLQQLNPKDLLGHLNPDKANKLESKIHKWQRKHPSVDKQNRTSAFLAFEADNLEEVQGKHDTVPEKFGRSKAQLELFKMWTEA--PSSVKSRYSKLYSRCPPPVLSKLR---PDRSFG--AVSEKISHTIANYIRT----------NPDKCLQDDGDQTSK---GVKASKFRSLM---YLKTLRSLVDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRMREILMTASANIKTPTMDMPLLAGKKVIKRAKKLQQKLNRVMLSQVL 844

HSP 3 Score: 52.7582 bits (125), Expect = 1.244e-6
Identity = 32/86 (37.21%), Postives = 44/86 (51.16%), Query Frame = 1

Query: 3646 HSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAA 3903
            ++N I  +    GI+AA   I  E+  V G + +  D RH+ L++D M Y G+I  F R GI +S  S     SFE T  H L  A
Sbjct: 1123 YTNDIHAVARTYGIEAAARAITKEVKNVFGGYGIHVDPRHLTLVSDYMTYEGKIKAFNRIGI-ESSASPFQKMSFETTT-HFLRGA 1206

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Match: EDO25572 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A8DW37])

HSP 1 Score: 72.7886 bits (177), Expect = 2.773e-13
Identity = 53/200 (26.50%), Postives = 90/200 (45.00%), Query Frame = 1

Query: 2527 LNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDN--TVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDYTYNEPALDNEIQYILKEFLDSHERKFENLDENLVKTLSDYYNSTEGLVFGITRSQMKLFIDNCYQKYFKA--IIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVAS 3114
            LN +E+       R+GL DTA+KTA+ GY+ RRL+   +D+ I  ++  T+R              G   S L+         +E+   L D      +L + I  +  E +    ++   + E++   + +       +   +T    +     CY K      + + G ++G+I  QS+GEP TQ+TL+TFH  GVA 
Sbjct:    1 LNVLEYFISTHGARKGLADTALKTADAGYLTRRLVDVAQDVVINEEDCGTLR--------------GTTTSALKDN-------EEVVEPLYDRILGRTSLHDVIDPLTDEIIIEAGKE---ITEDVAARIEESPIEAVEIRSVLTCESRRGVCAKCYGKNLATGYMAQKGDSVGIIAAQSIGEPGTQLTLRTFHVGGVAG 176

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Match: EDO27435 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7T993])

HSP 1 Score: 67.781 bits (164), Expect = 1.462e-11
Identity = 68/263 (25.86%), Postives = 113/263 (42.97%), Query Frame = 1

Query:  727 LIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDNKLHDMHSEYA---------RMIKP----------DATCIRSVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCC 1458
            +I K IPV P  +RP         +  D   +  R+ I +N+L  +    A         RM++            A+ +++ +  + ++ +   L GK+GRFR N++GKR ++++R+VI   P +++ E  +P+  A +L        Y    ++KLI  G  K    V  A  II K  ++P           V+W  L+N                ++ H      VL NR P+LHRL  QAF   + + K    +P  C
Sbjct:  245 MILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLMEIKAPEVILRNEKRMLQEAVDSLFDNTRKASAVKT-ESNRPLKSLSDSLKGKQGRFRQNLLGKRVDYSARSVIVVGPEMRLFECGLPKDMAAEL--------YKPFVIRKLIERGIVK---TVKSAKKIIDK--KEP-----------VVWDILEN---------------VIKGH-----PVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVC 462

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Match: polr3a (RNA polymerase III subunit A [Source:NCBI gene;Acc:101157164])

HSP 1 Score: 928.702 bits (2399), Expect = 0.000e+0
Identity = 555/1397 (39.73%), Postives = 807/1397 (57.77%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIY--DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKY--------ALXXXXXXXXXXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPDATCIR----------------SVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDYTY-NEPALD-NEI----QYILKE---------FLDSHERKFENLDENLVKTLSDYYNSTEGL--------VFGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNV--IIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIG----KVQIMGVKNVKRTVIQRNEQ---NRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSD 4047
            K +  I FG+ S E + QQ+H++V + ++Y  D    P  +G++D RMGT    + C+TC +    C+GH+GY+DL    F  G+ K ++ IL+ ICKTC  I+L + + +     L++PNL Y+QK+ ++  I +K  K   C  C+  NG+VKK   L +I H+KY            +  + F+    +++ I+ LLN     L P  V  LF+ IP +    L M N +  K ++LI   + VPP+CIRPS  +  ++ + EDD+T+ L   I  N   K H M     +MI  D   ++                ++  KK  RG +QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L+I+E+++P + A  LT+ E     N+  ++KL+ NG   +PGA            Q   +Q+K  +       K  N   R + A++L+ GD V+RH+   D+VLFNRQPSLH+LS  A    VK  +TF FN C C P+NADFDGDEMN+H PQT EAKAEA+ L+ +  N  +P +GEPL A +QD LT AYLLT KDTF++  +   ++  I+        + +P P I+KP+ L++GKQ+ S+++ P       SK     + +    +      + L  ND+ VVIHNS+L+ G + K  LG GSK +IF+ +L+D G L +  +M RL ++A   L +RGFS+GI DV+P   L   +++L++  +  C+E+I+  + G L   PGCS EETLE+ I  +LS IRD  G  C   L K NSPLIMA+CGSKGS+INISQM+ CVGQQ I G RV +    NR+L ++ ++ + P +KGFV++SFYSGL P EF FH M+GREGL+DTAVKTAETGYMQRRL+K LEDL  ++D TVR   G+++QF YG DG DP+ +E    P +F + L +    YT  +EPAL  N++      I+K          FL+  ++   ++ E + KT   Y  +  G         +  IT +Q++ F++ C  KY +A +EPG+A+G +C QS+GEP TQMTLKTFHFAGVASMNIT GVPR++EI+NA  NI TPIIT  L  +    FA+ ++ +I+   L  +   I+   L     +   L L  +++ +L +  E V  ++   K++     +       V +      K +   VL+ +     KV + G+  V R VI  +EQ   N++ + VEG  +  +    GV+G  T SN+  E+ + LGI+AA+  IINE+   M  H ++ D RHVMLLAD+M Y G+I G  R G++K K SVL LASFEKT DHL +AAY  QKD + G+S+ +  G    IGTG+  ++     +     RP L D
Sbjct:   13 KKISHICFGMKSAEQMRQQAHIQVVSKNLYSQDTKHTPLPHGVLDHRMGTSEKDRPCLTCGKNLADCLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSSIMLTKEEKLQFLDLLKRPNLAYLQKRGLKKKISEKCRKRTVCLNCSAFNGTVKKCGLLKII-HEKYKTTKKVVDPFVSEFMQSFDTAIEHNKLIEPLLNRAQENLNPLVVLNLFRRIPDEDIPLLLM-NPEAGKPADLIITRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMSGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEMVNKANLELMRKLVRNGPDVHPGANFI---------QNRRNQIKRFL-------KYGN---REKIAQELRFGDIVERHMIDGDVVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALILMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGKDEKVRISLPHPAILKPMALWTGKQIFSMILRP-------SKDCPVKANLRTKGKQYCGKGEDLCYNDSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGHGLLKAKQDLLDDGYKKCDEYIEALQTGKLQQQPGCSAEETLEALILRELSVIRDRAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD-GFENRSLPHFEKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSMGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYTCPDEPALSQNKLVLTSDAIMKRADFMCCRDSFLEEIKKFIRSMSERIKKTRDKYGINDNGTSEPKVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAQLDVEDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDIAVHGEAVVCVSPRENNKSSMYYVLQSLKEDLPKVVVQGIPEVARAVIHIDEQSGKNKYKLLVEGDNMRAVMATHGVNGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADKDPTPVTRPLLFD 1380

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Match: polr3a (RNA polymerase III subunit A [Source:NCBI gene;Acc:101157164])

HSP 1 Score: 924.85 bits (2389), Expect = 0.000e+0
Identity = 554/1409 (39.32%), Postives = 806/1409 (57.20%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIY--DNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKY--------ALXXXXXXXXXXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPDATCIR----------------SVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDYTY-NEPALD-NEI-----------------QYILKEFLDSHERKF--------ENLDENLVKTLSDYYNSTEGL--------VFGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNV--IIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIG----KVQIMGVKNVKRTVIQRNEQ---NRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSD 4047
            K +  I FG+ S E + QQ+H++V + ++Y  D    P  +G++D RMGT    + C+TC +    C+GH+GY+DL    F  G+ K ++ IL+ ICKTC  I+L + + +     L++PNL Y+QK+ ++  I +K  K   C  C+  NG+VKK   L +I H+KY            +  + F+    +++ I+ LLN     L P  V  LF+ IP +    L M N +  K ++LI   + VPP+CIRPS  +  ++ + EDD+T+ L   I  N   K H M     +MI  D   ++                ++  KK  RG +QRL GK+GRFRGN+ GKR +F+ RTVISPDP+L+I+E+++P + A  LT+ E     N+  ++KL+ NG   +PGA            Q   +Q+K  +       K  N   R + A++L+ GD V+RH+   D+VLFNRQPSLH+LS  A    VK  +TF FN C C P+NADFDGDEMN+H PQT EAKAEA+ L+ +  N  +P +GEPL A +QD LT AYLLT KDTF++  +   ++  I+        + +P P I+KP+ L++GKQ+ S+++ P       SK     + +    +      + L  ND+ VVIHNS+L+ G + K  LG GSK +IF+ +L+D G L +  +M RL ++A   L +RGFS+GI DV+P   L   +++L++  +  C+E+I+  + G L   PGCS EETLE+ I  +LS IRD  G  C   L K NSPLIMA+CGSKGS+INISQM+ CVGQQ I G RV +    NR+L ++ ++ + P +KGFV++SFYSGL P EF FH M+GREGL+DTAVKTAETGYMQRRL+K LEDL  ++D TVR   G+++QF YG DG DP+ +E    P +F + L +    YT  +EPAL  N++                    L+E  ++   K+         ++ E + KT   Y  +  G         +  IT +Q++ F++ C  KY +A +EPG+A+G +C QS+GEP TQMTLKTFHFAGVASMNIT GVPR++EI+NA  NI TPIIT  L  +    FA+ ++ +I+   L  +   I+   L     +   L L  +++ +L +  E V  ++   K++     +       V +      K +   VL+ +     KV + G+  V R VI  +EQ   N++ + VEG  +  +    GV+G  T SN+  E+ + LGI+AA+  IINE+   M  H ++ D RHVMLLAD+M Y G+I G  R G++K K SVL LASFEKT DHL +AAY  QKD + G+S+ +  G    IGTG+  ++     +     RP L D
Sbjct:   13 KKISHICFGMKSAEQMRQQAHIQVVSKNLYSQDTKHTPLPHGVLDHRMGTSEKDRPCLTCGKNLADCLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSSIMLTKEEKLQFLDLLKRPNLAYLQKRGLKKKISEKCRKRTVCLNCSAFNGTVKKCGLLKII-HEKYKTTKKVVDPFVSEFMQSFDTAIEHNKLIEPLLNRAQENLNPLVVLNLFRRIPDEDIPLLLM-NPEAGKPADLIITRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMSGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEMVNKANLELMRKLVRNGPDVHPGANFI---------QNRRNQIKRFL-------KYGN---REKIAQELRFGDIVERHMIDGDVVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALILMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGKDEKVRISLPHPAILKPMALWTGKQIFSMILRP-------SKDCPVKANLRTKGKQYCGKGEDLCYNDSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGHGLLKAKQDLLDDGYKKCDEYIEALQTGKLQQQPGCSAEETLEALILRELSVIRDRAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD-GFENRSLPHFEKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSMGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYTCPDEPALSQNKLVLTSDAIMKRADFMCCRDSFLEELTETGSEKYLEEIKKFIRSMSERIKKTRDKYGINDNGTSEPKVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAQLDVEDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDIAVHGEAVVCVSPRENNKSSMYYVLQSLKEDLPKVVVQGIPEVARAVIHIDEQSGKNKYKLLVEGDNMRAVMATHGVNGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADKDPTPVTRPLLFD 1392

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Match: polr2a (RNA polymerase II subunit A [Source:NCBI gene;Acc:101160848])

HSP 1 Score: 386.726 bits (992), Expect = 1.223e-110
Identity = 253/728 (34.75%), Postives = 388/728 (53.30%), Query Frame = 1

Query:  625 LLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSA--QTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPD--------ATCI--------RSV-KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE 2742
            LL P  V ++F+ I  +    LGM + K  +   +I   +PVPP+ +RP+   Q S+ N   +DD+T  L   +  N   + ++     A +I  D        AT +        R++ K  + ++ + QRL GK+GR RGN+MGKR +F++RTVI+PDP+L+I+++ +P   A  +TF E  T +NI  L++L+  G  +YPGA                 +  +  N +    ++D       +   L++G  V+RH+   DIV+FNRQP+LH++S     + +    TF  N     P+NADFDGDEMN+H PQ+ E +AE  EL    +   +P S  P+   +QD LTA    T +D F    E  NL++ +           +P+P I+KP  L++GKQ+ SL+I       P    VI  +      +  S P  +++P DT V++ N +LIMG L KK LG  +   +    L+   D+        +  +    L   G S+GI D    AK     +  +++      E I+   N  L   PG ++ +T E++++  L+  RD+ G   + +L + N+   M + GSKGS INISQ++  VGQQ +EGKR+      +RTL ++ ++   P S+GFV NS+ +GL P EF FHAM GREGLIDTAVKTAETGY+QRRLIK +E + +++D TVR+    +VQ +YG DG     +E
Sbjct:  213 LLSPERVHEIFKRISDEEDLILGM-DPKFARPEWMIVTVLPVPPLAVRPAVVMQGSARN---QDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGA-----------------KYIIRDNGD----RIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWD-----GKMPQPAILKPRPLWTGKQIFSLII-------PGHINVI-RTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRL-FYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIP-FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVE 900

HSP 2 Score: 90.1225 bits (222), Expect = 1.406e-17
Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 1

Query: 3580 IYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
            +  +G  L+ +   + VD + T SN I+EI+ VLGI+A +  +  EL  V+       + RH+ LL D M   G +    R GI++     L   SFE+T+D L+EAA H + D + G+S+++  G+  P GTG
Sbjct: 1334 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEAASHGECDPMKGVSENIMLGQLAPAGTG 1467

HSP 3 Score: 85.5001 bits (210), Expect = 3.476e-16
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 1

Query: 2944 FGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYL 3201
            F ++       +     K+ ++I  PG  +G +  QS+GEPATQMTL TFH+AGV++ N+T GVPR++E++N     KTP +TV+L
Sbjct: 1056 FRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFL 1141

HSP 4 Score: 68.5514 bits (166), Expect = 5.144e-11
Identity = 40/132 (30.30%), Postives = 69/132 (52.27%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDI----YDNLAKPAENGLMDQRMGTCS-STKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEH-----DVMSHEKELRKPNLTYI 408
            + +  ++FGI S +++ + S   VT   I         +P   GLMD R G    S +C TC      C GHFG+I+L+  +F  GF+  I+K+L+C+C  C  +L++ +     D+++  K   +  LT++
Sbjct:   14 RTIKRVQFGIISPDELKRMS---VTTEGIKYPETTEGGRPKLCGLMDPRQGVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFCSKLLVDSNNPKIKDILTKSKGQPRKRLTHV 142

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Match: polr2a (RNA polymerase II subunit A [Source:NCBI gene;Acc:101160848])

HSP 1 Score: 386.341 bits (991), Expect = 1.804e-110
Identity = 253/728 (34.75%), Postives = 388/728 (53.30%), Query Frame = 1

Query:  625 LLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSA--QTSSENTSREDDITILLRMQIGDN---KLHDMHSEYARMIKPD--------ATCI--------RSV-KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE 2742
            LL P  V ++F+ I  +    LGM + K  +   +I   +PVPP+ +RP+   Q S+ N   +DD+T  L   +  N   + ++     A +I  D        AT +        R++ K  + ++ + QRL GK+GR RGN+MGKR +F++RTVI+PDP+L+I+++ +P   A  +TF E  T +NI  L++L+  G  +YPGA                 +  +  N +    ++D       +   L++G  V+RH+   DIV+FNRQP+LH++S     + +    TF  N     P+NADFDGDEMN+H PQ+ E +AE  EL    +   +P S  P+   +QD LTA    T +D F    E  NL++ +           +P+P I+KP  L++GKQ+ SL+I       P    VI  +      +  S P  +++P DT V++ N +LIMG L KK LG  +   +    L+   D+        +  +    L   G S+GI D    AK     +  +++      E I+   N  L   PG ++ +T E++++  L+  RD+ G   + +L + N+   M + GSKGS INISQ++  VGQQ +EGKR+      +RTL ++ ++   P S+GFV NS+ +GL P EF FHAM GREGLIDTAVKTAETGY+QRRLIK +E + +++D TVR+    +VQ +YG DG     +E
Sbjct:  213 LLSPERVHEIFKRISDEEDLILGM-DPKFARPEWMIVTVLPVPPLAVRPAVVMQGSARN---QDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGA-----------------KYIIRDNGD----RIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWD-----GKMPQPAILKPRPLWTGKQIFSLII-------PGHINVI-RTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRL-FYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIP-FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVE 900

HSP 2 Score: 90.1225 bits (222), Expect = 1.563e-17
Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 1

Query: 3580 IYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTG 3981
            +  +G  L+ +   + VD + T SN I+EI+ VLGI+A +  +  EL  V+       + RH+ LL D M   G +    R GI++     L   SFE+T+D L+EAA H + D + G+S+++  G+  P GTG
Sbjct: 1334 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEAASHGECDPMKGVSENIMLGQLAPAGTG 1467

HSP 3 Score: 85.5001 bits (210), Expect = 3.581e-16
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 1

Query: 2944 FGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYL 3201
            F ++       +     K+ ++I  PG  +G +  QS+GEPATQMTL TFH+AGV++ N+T GVPR++E++N     KTP +TV+L
Sbjct: 1056 FRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFL 1141

HSP 4 Score: 68.9366 bits (167), Expect = 4.110e-11
Identity = 40/132 (30.30%), Postives = 69/132 (52.27%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDI----YDNLAKPAENGLMDQRMGTCS-STKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEH-----DVMSHEKELRKPNLTYI 408
            + +  ++FGI S +++ + S   VT   I         +P   GLMD R G    S +C TC      C GHFG+I+L+  +F  GF+  I+K+L+C+C  C  +L++ +     D+++  K   +  LT++
Sbjct:   14 RTIKRVQFGIISPDELKRMS---VTTEGIKYPETTEGGRPKLCGLMDPRQGVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFCSKLLVDSNNPKIKDILTKSKGQPRKRLTHV 142

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Match: polr1a (RNA polymerase I subunit A [Source:NCBI gene;Acc:101156830])

HSP 1 Score: 274.633 bits (701), Expect = 1.888e-74
Identity = 195/628 (31.05%), Postives = 324/628 (51.59%), Query Frame = 1

Query:  940 GMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNI-VVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQ-------IVETSSNPVDYLNPN---DTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLK-SRGFSLGITD--VSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEE--------------TLESKISSQLSKIRDEGGKEC-KTTLHKR---NSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFD 2727
            G+ Q L  K+G FR ++MGKR ++ +R+VI PD  ++ NEI IP   A KLT+ +  T +N+  L++ +LNG   +PGA    S +I+++ ++ +         E +  +L           K+ +   V RHI + D++L NRQP+LHR S QA    ++  EK    +   C  +NADFDGDEMN HFPQ+   +AEA  L+S+ +    P  G+PL   +QD + +   +T +  F+   ++  L+   +      ++ ++P P ++KP  L++GKQ++S ++     L+   ++ +P + I +        ++          P    D+ VVI   +L++G L K   G  +   +     +  G   S + +  L ++  A L+  RGF+LG+ D  V P A  R  +++++E +  +  + ++   N     DP  +                 T + K     +++ ++  K C    LH     N+  +M   G+KGS +N  Q+   +GQ  +EG+R   +        + P +  SP + GFVS  F +G+ P EF FH M+GREGL+DTAVKT+ +GY+QR +IK LE L +++D TVRD  G++VQF YG DG D
Sbjct:  404 GVRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYIETNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHPGA----SMVINEDGRKTILSPTNFTQREAVAKQLLTPSL---GPHKMSM-KIVNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVSTNQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRDQYTELVFRGL-TDKRGRVKLLP-PAVLKPQHLWTGKQVVSTLL-----LNVIPEKAVPLNLIGRSKIPSKAWIKLPPRAAPGYQPESMCDSQVVIRQGELLVGVLDKAHYGSSAYGLVHC-CYELYGGETSGKLLGCLARLFTAYLQLYRGFTLGVEDILVKPGANKR--RRKIIESSRNVGSQALQAAFNLPPGVDPADARSRWQDAHLNPDQRDFSTADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKFLPCFQPYD-PSPGAGGFVSGRFLTGIKPQEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1012

HSP 2 Score: 87.0409 bits (214), Expect = 1.306e-16
Identity = 36/70 (51.43%), Postives = 56/70 (80.00%), Query Frame = 1

Query: 2989 YQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEI-MNAVANIKTPIITV 3195
            + K+ +++ +PG A+G++  QS+GEP+TQMTL TFHFAG   MN+T G+PR++EI M A +NIKTP++++
Sbjct: 1177 HYKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSI 1246

HSP 3 Score: 60.077 bits (144), Expect = 2.241e-8
Identity = 44/149 (29.53%), Postives = 70/149 (46.98%), Query Frame = 1

Query: 3538 KRTVIQRNEQNRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGM 3984
            K TV+     N H ++ + G++LDL ++        +SN +  +    GI+ A  +I  E+  V   + +  D RH+ L+AD MC+ G      R  I +S +S L   +FE +   L +A      D+L   S  L  GK    GTG+
Sbjct: 1541 KETVLNTEGINMHEMF-KYGEILDLNRL--------YSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRHAI-RSNSSPLQQMTFETSYKFLKQATMLGSHDQLESPSACLVVGKVVKGGTGL 1679

HSP 4 Score: 51.6026 bits (122), Expect = 7.682e-6
Identity = 33/120 (27.50%), Postives = 57/120 (47.50%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVKVTNHDIYDNLAKPAENGLMDQRMGTCSSTK-CVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCG---------HILLNEHDVMSH 372
            + +  I FG+ S E+I + S   +TN    D +   A N L D  +G     + C TC ++   C GHFG+I+L   ++   F   +  +++  C +C          H+LLN+  ++ H
Sbjct:   10 RRLSGISFGMYSAEEIRKLSVKTITNPKFLDAVGNVAPNSLYDLALGPADLKEVCSTCCQDFNNCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHMLTCPRAAIHLLLNQLKLVDH 129

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Match: SMESG000069361.1 (SMESG000069361.1)

HSP 1 Score: 2701.78 bits (7002), Expect = 0.000e+0
Identity = 1348/1348 (100.00%), Postives = 1348/1348 (100.00%), Query Frame = 1

Query:   10 MKSLVRPGTEDKAVCAIEFGINSIEDIVQQSHVKVTNHDIYDNLAKPAENGLMDQRMGTCSSTKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKYALXXXXXXXXXXXXNYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDNKLHDMHSEYARMIKPDATCIRSVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDYTYNEPALDNEIQYILKEFLDSHERKFENLDENLVKTLSDYYNSTEGLVFGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVIIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIGKVQIMGVKNVKRTVIQRNEQNRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSDLI 4053
            MKSLVRPGTEDKAVCAIEFGINSIEDIVQQSHVKVTNHDIYDNLAKPAENGLMDQRMGTCSSTKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQKKSIRTIIIKKSSKIRRCRFCNDSNGSVKKLKSLSMICHKKYALKEQQKKFFEQFENYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDNKLHDMHSEYARMIKPDATCIRSVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPKKLLGGGSKLSIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDYTYNEPALDNEIQYILKEFLDSHERKFENLDENLVKTLSDYYNSTEGLVFGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVIIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIGKVQIMGVKNVKRTVIQRNEQNRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSDLI
Sbjct:    1 MKSLVRPGTEDKAVCAIEFGINSIEDIVQQSHVKVTNHDIYDNLAKPAENGLMDQRMGTCSSTKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQKKSIRTIIIKKSSKIRRCRFCNDSNGSVKKLKSLSMICHKKYALKEQQKKFFEQFENYSQEIKNLLNSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDNKLHDMHSEYARMIKPDATCIRSVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPKKLLGGGSKLSIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELYHALQDYTYNEPALDNEIQYILKEFLDSHERKFENLDENLVKTLSDYYNSTEGLVFGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVIIQSQLLACSTGMFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEVFSEKKINCQKVLKVIGKVQIMGVKNVKRTVIQRNEQNRHNIYVEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSDLI 1348

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Match: SMESG000010459.1 (SMESG000010459.1)

HSP 1 Score: 430.254 bits (1105), Expect = 1.474e-125
Identity = 315/956 (32.95%), Postives = 484/956 (50.63%), Query Frame = 1

Query:   10 MKSLVRPGTEDKAVCAIEFGINSIEDIVQQSHVKVTNHDIYDNL---AKPAENGLMDQRMGTCSS-TKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHKKYALXXXXXXXXXXXXNYSQEI--KNLLNSGVTL------------LRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDN------------------KLHDMHSEYARMIKPDATCIRSV--KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNP-------VDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLE 2742
            M +L  P    + V  ++FGI S  +I + S V   N  IY       KP ++GLMD R G     + C TC      C GHFG+I+L+  +F  GF + I+KIL+ +C  C  +L + +   S+ KE+ K   T I  +     +  +  + + C   N S+     LK+  M                     Y Q I  +N L   VTL            LR Y V ++F+ I  +    +G  N K  +   +I   + VPP+ +RP+   +    S  DD+T  L   +  N                  K + +    A  I  ++  + +   K  + ++ + QRL GK GR R N+MGKRT++++RTVI+ DP+L ++++ +P   A  LTF E  T +N  +L++L+ NG   YPGA                    +  N +    ++D ++    +  +L+ G+ V+RH+ + D V+FNRQP+LH++S     + V    TF  N    +P+NADFDGDEMN+H PQ+ E KAE  +L    K   +P S +P+ + +QD LTA   +T++D F N  E  +L++ +     P     +P+P I KP++L++GKQ+ SL+I                 R+N I   S++P         +++P DT V+I + +LI G L KK LG  +   I    L+   D A       +  +    L   G ++GI D    AK R   K+ +++      E I    N  L S PG ++ +T E+ ++  L+  RD+ G   + +L K N+  +M + G+KGS INISQ++ CVGQQ +EGKR+       RTL ++ ++   P S+GFV NS+ +GL P EF FHAM GREGLIDTAVKTAETGY+QRRLIK +E + I++D+TVR+    L+QF+YG DG D + +E
Sbjct:    1 MANLDLPSVPLREVKRVQFGILSASEIKRLSVVG-ENGIIYAEKTQDGKPKKDGLMDPRQGPFDKYSYCQTCGGSVAECPGHFGHINLARPVFHIGFKEKIIKILRSVCFKCSKLLADVNS--SNVKEILK--KTEINPRKRFDFMYDECRRNKVCSVPN-SDRDEMDLKTQEM---------------SRSGCGYVQPIFRRNGLEYFVTLKDDSSDSDSKQPLRAYQVLEIFRRITEEDCLLMGF-NPKYSRPEGMIMTVLSVPPLAVRPAVVMNHTGKS-HDDLTHKLTEVVKVNNEIRTAEENGVASTILLEKENSLQYHVATFIDNESPFLPTAIQKSGRPLKTLKQRLKGKHGRIRSNLMGKRTDYSARTVITADPNLNLDQVGVPRMIAQNLTFPEKVTPFNKHYLQQLVKNGTM-YPGAA-----------------FVIRENGD----RIDLKRRPDSSDIQLQYGETVERHMLNDDFVVFNRQPTLHKMSMMCHRVKVLPFSTFRLNLSVTSPYNADFDGDEMNLHLPQSLETKAEVSDLARVTKLIITPQSNKPVMSIVQDTLTACNKMTTRDVFLNRAEVMHLLMYL-----PTWNGRLPKPAIYKPLRLWTGKQIFSLIIP---------------GRVNCIRTHSTHPEPEENGPYKWISPGDTKVLIEDGELISGILCKKTLGSSAGSLIHIIALEQHPDEAGG-FFNNVQTVVNNWLLIEGHTIGIVDALYDAKTREEIKQTIDRAKEAVFETIDKAHNYELQSTPGNTLRQTFETTVNKILNDARDKTGSCAQKSLSKYNNFNLMVMSGAKGSKINISQVIACVGQQNVEGKRIP-FGFQQRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIKYDSTVRNQIDQLIQFRYGEDGLDGAFVE 889

HSP 2 Score: 96.6709 bits (239), Expect = 1.102e-19
Identity = 53/162 (32.72%), Postives = 87/162 (53.70%), Query Frame = 1

Query: 3586 VEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSDLI*NYLLI 4071
             +G  L  +     VD   T SNHI EI+E  GI+AA++ I  E++ V+       + RH+ LL +IM + G +    R GI++ +   L  +SFE+T+D L+EA  H + D + G+S+S+  G+   IGTG   I+ N     + +  P +S +  N  ++
Sbjct: 1321 TDGTCLQKVLAERDVDSETTISNHITEIFETFGIEAARNAIEREMHHVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLAKIGTGCFDILMNYEKCNEAQALPMMSGVAHNLYMV 1482

HSP 3 Score: 95.1301 bits (235), Expect = 3.387e-19
Identity = 40/101 (39.60%), Postives = 73/101 (72.28%), Query Frame = 1

Query: 2995 KYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRE--SFAKTMQLKIQPVFLKNVIIQSQL 3291
            ++ +++++PG  +G +  +S+GEPATQMTL TFH+AGV++ N+T GVPR++EI+N   N KTP +TV+LT +  +    AK++  +++   L+ + ++S++
Sbjct: 1063 RFNQSLVQPGEMVGALAAESLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTVFLTGNAAKDAEMAKSIAARLEHTTLRKLAVKSEI 1163

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Match: SMESG000078620.1 (SMESG000078620.1)

HSP 1 Score: 407.142 bits (1045), Expect = 1.073e-117
Identity = 294/902 (32.59%), Postives = 463/902 (51.33%), Query Frame = 1

Query:  166 MDQRMGTCSS-TKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQXXXXXXXXXXXXXXXXXCRFCNDSNGSVKKLKSLSMICHK------------KYALXXXXXXXXXXXXNYSQEIKNLLNS-GVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSRED---DITILLRM-----QIGDN---------KLHDMHSEYARMIKPDATCIRSV--KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILK----DVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRT-IQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCP 2757
            MD R G     + C TC      C GHFG+I+L+  ++  G+ + I+KIL+ +C  C  +L+N HD          P +  I KK+  +   +       C          KK+K+ ++IC +            +      Q KF     +YS E K+  +  G   L  + V ++F+ I  +    +G  N K  +  ++I   + VPP+ +RP+   +    + +D    +T ++++     Q  +N         K + +    A ++  ++T +     K  + ++ + QRL GK GR R N+MGKRT++T+RTVI+ DP+L ++++ +P   A  LTF E  T +N   L++L+ NG   YPGA                 +  +  N +    ++D ++    +  +L  G+ V+RH+ + D V+FNRQP+LH++S     + V    TF  N     P+NADFDGDEMN+H PQ+ EA AE   L    K   +P S  P+ + +QD LTA   +T +DTF N  E  +L++ +     P+   ++P+P I KP +L++GKQL SL+I P       +    P+S         S P  +++  DT V+I N +LIMG L KK LG  S   +    L+    D+G+         +  +    L   G ++GI D   +A  R  I+  + +    + +   K + N  L S PG S+ +T E K++  L++ RD+ G   + +L K NS  +M + G+KGS INISQ++ CVGQQ +EGKR+       RTL ++ +    P S+GFV NS+ +GL P EF FHAM GREG+IDTAVKTAETGY+QRRL+K +E + +++D TVR+    L+Q +YG DG D   +E    P
Sbjct:    1 MDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNIHD----------PKIREIMKKTEGSYRKRFDLIHEEC----------KKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGF-NYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTM-YPGA-----------------KFVIRENGD----RIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLII-PGKVNCNRTHSTHPESE-------DSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNF-----FNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSN-ELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIP-FGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLP 839

HSP 2 Score: 94.7449 bits (234), Expect = 3.814e-19
Identity = 50/148 (33.78%), Postives = 83/148 (56.08%), Query Frame = 1

Query: 3628 VDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSDLI*NYLLI 4071
            VD   T SNHI EI+E  GI+AA++ I  E+  V+       + RH+ LL +IM + G +    R GI++ +   L  +SFE+T+D L+EA  H + D + G+S+S+  G+   +GTG   I+ N +   + +  P +S +  N  ++
Sbjct: 1280 VDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMV 1427

HSP 3 Score: 87.8113 bits (216), Expect = 5.154e-17
Identity = 40/100 (40.00%), Postives = 65/100 (65.00%), Query Frame = 1

Query: 2998 YFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRE--SFAKTMQLKIQPVFLKNVIIQSQL 3291
            ++K+ + PG  +G +  +S+GEPATQMTL TFHFAGV++ N+T GVPR++EI+N   N KTP +T+ L     +    AK +   ++   L+ + + S++
Sbjct: 1009 FYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEI 1108

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Match: SMESG000003379.1 (SMESG000003379.1)

HSP 1 Score: 355.14 bits (910), Expect = 2.597e-100
Identity = 260/780 (33.33%), Postives = 401/780 (51.41%), Query Frame = 1

Query:  580 NYSQEIKNLLNSGVT-LLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSREDDITILLRMQIGDN------------------KLHDMHSEYARMIKPDATCIRSV--KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPXXXXXXXXXXXIFFRILKD----VGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRT-------IQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCP------CDFTKELYHALQDYTY 2805
            +YS  I+   N   T +L+ Y VF +FQ I  +    +G   + + +  ++I   + VPP+ +RP A   + +    DD+T  L   +  N                  K++ +    A +   ++T + +   K  + ++ + QRL GK GR R N+MGKRT+FT+RTVI+ DP+L ++++ +P   A  LTF E  T  N   L+ L+ NG  +YPGA                 +  +  N +    ++D ++        L +G+ V+RH+ + D V+FNRQP+LH++S     + V    TF  N     P+NADFDGDEMN+H PQT E++AE   L    +   +P S +P+ + +QD LTA   +T +D   N+ E  NL++  + C   N +  +PRP I+KP +L++GKQL SL+I P G     +     D   N        P  ++   DT V + + +L+ G L KK LG  S   I    ++     +G+         + ++    L  +G S+GI D   + + R        + K+ V      C+ F        L   PG S+ ET E  ++  L+++RD+ G   + +L K NS   M + G+KGS INISQ++ CVGQQ +EGKR+   +   RTL ++ ++     SKGFV NS+ +GL P EF FHAM GREG+IDTAVKTAETGY+QRRL+K +E + + +D TVR+   ++ QF+YG DG D + +E    P        F K+      D TY
Sbjct:  187 DYSVTIQGEHNDVTTKVLQAYQVFDIFQRISNEDCLLMGFDYRFS-RPESMILTVLAVPPMAVRP-AIIMNHSGKAHDDLTHKLTEIVKVNEDIKRSEQNGAASVIILEKINQLQYHVATLFDNESTFLPTAIQKSGRPLKSLKQRLKGKGGRVRANLMGKRTDFTARTVITADPNLNLDQVGVPILIAKNLTFPEIVTPINRNFLQTLVGNGC-EYPGA-----------------KYVIKENGD----RIDLKRHPNTKDICLSIGETVERHMINDDFVIFNRQPTLHKMSMMCHRVKVLPFSTFRLNLSVTAPYNADFDGDEMNLHMPQTQESRAEVAYLARVNRLVITPQSNKPVMSVVQDSLTACDKMTRRDVLLNKAEMMNLLM-FLPCW--NNV--MPRPAILKPQRLWTGKQLFSLII-PKGINYTRTHSTHNDDEEN-------GPYKWITYCDTKVYVEDGQLLSGILCKKSLGSSSGSLIHVIAVEHNYEVIGNF-----FNDVQRVTNNWLLIQGHSIGINDCLYNPETRDLIRSSIFVAKDNVFSKIDDCQRF-------KLKCLPGRSLAETFEDSVNKILNEVRDKTGTIAQKSLSKYNSFNSMVMSGAKGSKINISQVIACVGQQNVEGKRIP-FNFKWRTLPHFVKSDYGSESKGFVENSYLAGLTPSEFFFHAMGGREGIIDTAVKTAETGYIQRRLVKAMESIKVEYDGTVRNQIEHVYQFRYGEDGLDGAFVEFQMFPTYKINNSKFEKKFRFRYDDVTY 916

HSP 2 Score: 102.834 bits (255), Expect = 1.527e-21
Identity = 53/139 (38.13%), Postives = 80/139 (57.55%), Query Frame = 1

Query: 3586 VEGGKLLDLFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFN 4002
             +G  L  +     VD +NT SNHI EI+  LGI+AA++ I  E+N V+       + RH+ LL D+M   G +    R GI++ +  VL  ++FE+T+D LLEA  H   D + G+S+S+ FG+   +GTG   I+ N
Sbjct: 1324 TDGSCLQKVLAERDVDPVNTTSNHITEIFTTLGIEAARNAIEYEMNNVLSFDGSYVNYRHLGLLCDVMTQKGYLMSMDRHGINRQETGVLARSTFEETVDILLEAGAHADIDPMKGVSESVLFGQLAKMGTGCFDILIN 1462

HSP 3 Score: 88.1965 bits (217), Expect = 4.017e-17
Identity = 40/116 (34.48%), Postives = 70/116 (60.34%), Query Frame = 1

Query: 2950 ITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRE--SFAKTMQLKIQPVFLKNVIIQSQL 3291
            ++ +  +  +      + KA++ PG  +G +  +S+GEPATQMTL TFHFAGV++ N+T GVPR++EI+N   N KTP + + L     +    AK +  +++   L+ + + S++
Sbjct: 1049 LSSAAFEWIVGEIQNNFSKALVPPGEMVGALAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVSRNPKTPSLNIRLLGKAAKDAELAKKVAARLEHTTLRKLTLSSKI 1164

HSP 4 Score: 66.6254 bits (161), Expect = 1.614e-10
Identity = 36/110 (32.73%), Postives = 62/110 (56.36%), Query Frame = 1

Query:   43 KAVCAIEFGINSIEDIVQQSHVK----VTNHDIYDNLAKPAENGLMDQRMGTCSS-TKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEH 357
            K+V +++FG+ S  +I++ S +     +      + +AK   NGLMD R G     + C TC      C GHFG+I+LS  ++  GF + I+K+L+ +C  C  IL++++
Sbjct:   12 KSVKSVQFGLLSATEILKASVLDPEGIIYPEKAENGIAK--RNGLMDARQGPVDRYSYCETCSSSVSECPGHFGHINLSKPVYHIGFKEKIIKVLRSVCFKCSRILIDKN 119

[Close]

BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Match: SMESG000021710.1 (SMESG000021710.1)

HSP 1 Score: 178.333 bits (451), Expect = 8.706e-45
Identity = 122/343 (35.57%), Postives = 181/343 (52.77%), Query Frame = 1

Query: 2299 CKTTLHKR---NSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCPCDFTKELY--------HALQDYTYNEPALDNEIQYILKEFLDSHERKFENL---DENLVKTLSDYYNSTEGLVFGITRSQMKLFIDNCYQKYFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEI-MNAVANIKTPIITVYL--TDDVRESFAKTMQLKIQPVFLKNVI 3276
            CK  L ++   N+ L+M   G+KG   N++++   +G   IEGKR     G  RTL  +      P+S+GF  + F SGL P E  F +M+GR+GL+DTAVKT+ +GY+QR LIK LED+ +  D TVRD   N++QF+YG DG D     S   P DF + +           L++    +P L   +   + E L   +R F  +   DENL++ +                    + + + Y     +I   G A+G++  QSVGEP+TQMTL TFH AG + MN+T G+PR++EI M     IKTP + V +   DD   S    ++ K   ++LK++I
Sbjct:  816 CKNNLREKFPDNNLLLMCQTGAKGGESNVTKIAIALGAIEIEGKRCPLTVG-GRTLPSFKRYDLDPVSRGFCVSRFMSGLKPQELFFESMAGRDGLVDTAVKTSTSGYLQRCLIKHLEDITVCHDGTVRDNMHNIIQFRYGYDGLDVINSVSLSKP-DFMEVIAKNIRLMEKRYLKEPRNTKPVLSKVLAKKIDELLVKLKRDFVEISPKDENLLREI--------------------IAVKSEY-----SICPNGEAVGLLAAQSVGEPSTQMTLNTFHNAGQSEMNVTLGIPRLREILMLGSDKIKTPSMDVPILACDDAINSATSVLK-KFTKLYLKDII 1130

HSP 2 Score: 172.94 bits (437), Expect = 4.631e-43
Identity = 104/293 (35.49%), Postives = 155/293 (52.90%), Query Frame = 1

Query:  940 GMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASG-----IISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVV---KKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVI 1794
            G+ Q++  K G FR NIMGKR NF  R+VISPDP++ ++EI +P     KLT+ E     N   L + +LNG   YPGAV+Y  G     +I   P + +  LK          +L N +  I           + RH  S D ++ NRQP+LHR S QA  I      K KT   +   C  +NADFDGDEMN H+PQ+  A+AEA  L++     ++P  G PL   +QD + A   +  +D+ +   E  +L+   +      +   +P+P I+ P +L++GKQ++S+V+
Sbjct:  359 GLRQKIDKKDGLFRSNIMGKRVNFACRSVISPDPTIGLDEIGVPIVFLSKLTYPEPLNPMNKDFLLQCVLNGPDVYPGAVSYQIGNRFPMVIGHNPLEVVENLKF---------QLQNNQTVI-----------INRHALSGDALIMNRQPTLHRPSMQAHIIKAIHDPKAKTLRMHYSNCKAYNADFDGDEMNGHYPQSLLAQAEAKLLVNVCYQHSTPKDGSPLAGLIQDHIIAGTKMCLRDSTFTRNECLDLVYHGLHNSNQREF-KLPKPAIIFPNQLWTGKQILSIVL 630

HSP 3 Score: 67.3958 bits (163), Expect = 7.849e-11
Identity = 45/165 (27.27%), Postives = 92/165 (55.76%), Query Frame = 1

Query: 3490 VLKVIGKVQIMGVKNVKRTVIQRNEQNRHNIYVEGGKLLDLFQIEGVDGINT-HSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGK-TTPIGT 3978
            +L +     I  V  V++ +I  + +++     EG   L+LF+ + +  +N  +SN+I+++ ++ GI+AA   I NE+  V  ++N+  + RH+ L+AD + ++G++  F R  ++ + +S L  ASFE  L  ++E   +   D +   + ++ FG+  + IGT
Sbjct: 1322 LLNIFENCVISSVAGVEKALIFNSNKSKR-FATEGYNTLELFKYDSIFDLNKFYSNNIIKMSKLYGIEAAMSCIENEIKTVFKSYNIDVNSRHLRLIADFLTHSGKVGAFNRHMMT-NHSSPLQRASFETALTVIIEMLTYGTVDYIKSPTSNIMFGQLVSNIGT 1484

The following BLAST results are available for this feature:

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Fly
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Zebrafish
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Sea Lamprey
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Yeast
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
POLR3A	0.000e+0	40.23	RNA polymerase III subunit A [Source:HGNC Symbol;A...	[more]
POLR2A	1.939e-110	34.30	RNA polymerase II subunit A [Source:HGNC Symbol;Ac...	[more]
POLR2A	1.939e-110	34.30	RNA polymerase II subunit A [Source:HGNC Symbol;Ac...	[more]
POLR1A	2.085e-75	30.63	RNA polymerase I subunit A [Source:HGNC Symbol;Acc...	[more]
POLR1A	2.977e-75	30.63	RNA polymerase I subunit A [Source:HGNC Symbol;Acc...	[more]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rpc-1	0.000e+0	38.33	DNA-directed RNA polymerase subunit [Source:UniPr...	[more]
ama-1	3.386e-126	31.79	DNA-directed RNA polymerase II subunit RPB1 [Sour...	[more]
ama-1	3.386e-126	31.79	DNA-directed RNA polymerase II subunit RPB1 [Sour...	[more]
rpoa-1	7.195e-82	32.55	DNA-directed RNA polymerase subunit [Source:UniPr...	[more]
rpoa-1	6.828e-9	37.08	DNA-directed RNA polymerase subunit [Source:UniPr...	[more]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3


Match Name	E-value	Identity	Description
RpIIIC160	0.000e+0	37.36	gene:FBgn0030687 transcript:FBtr0300811	[more]
RpII215	3.106e-109	34.08	gene:FBgn0003277 transcript:FBtr0073542	[more]
RpI1	3.650e-78	31.25	gene:FBgn0019938 transcript:FBtr0087511	[more]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
polr3a	0.000e+0	40.80	polymerase (RNA) III (DNA directed) polypeptide A ...	[more]
polr2a	1.457e-124	31.78	polymerase (RNA) II (DNA directed) polypeptide A [...	[more]
polr1a	5.421e-75	32.07	RNA polymerase I subunit A [Source:ZFIN;Acc:ZDB-GE...	[more]
polr1a	5.578e-75	32.07	RNA polymerase I subunit A [Source:ZFIN;Acc:ZDB-GE...	[more]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
polr3a	0.000e+0	40.77	polymerase (RNA) III (DNA directed) polypeptide A,...	[more]
polr3a	0.000e+0	40.67	polymerase (RNA) III (DNA directed) polypeptide A,...	[more]
polr3a	0.000e+0	40.79	polymerase (RNA) III (DNA directed) polypeptide A,...	[more]
ctdnep1	1.325e-125	32.26	CTD nuclear envelope phosphatase 1 [Source:Xenbase...	[more]
ctdnep1	5.100e-125	32.26	CTD nuclear envelope phosphatase 1 [Source:Xenbase...	[more]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Polr3a	0.000e+0	40.23	polymerase (RNA) III (DNA directed) polypeptide A ...	[more]
Polr3a	4.316e-125	39.61	polymerase (RNA) III (DNA directed) polypeptide A ...	[more]
Polr2a	4.309e-111	34.30	polymerase (RNA) II (DNA directed) polypeptide A [...	[more]
Polr2a	1.420e-110	34.30	polymerase (RNA) II (DNA directed) polypeptide A [...	[more]
Polr1a	3.723e-76	30.81	polymerase (RNA) I polypeptide A [Source:MGI Symbo...	[more]

BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q5ZL98\|RPC1_CHICK	0.000e+0	40.34	DNA-directed RNA polymerase III subunit RPC1 OS=Ga...	[more]
sp\|A4IF62\|RPC1_BOVIN	0.000e+0	40.30	DNA-directed RNA polymerase III subunit RPC1 OS=Bo...	[more]
sp\|O14802\|RPC1_HUMAN	0.000e+0	40.23	DNA-directed RNA polymerase III subunit RPC1 OS=Ho...	[more]
sp\|O94666\|RPC1_SCHPO	0.000e+0	38.49	DNA-directed RNA polymerase III subunit rpc1 OS=Sc...	[more]
sp\|Q6BI69\|RPC1_DEBHA	0.000e+0	36.60	DNA-directed RNA polymerase III subunit RPC1 OS=De...	[more]

BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0R3TK71	0.000e+0	43.69	DNA-directed RNA polymerase subunit OS=Rodentolepi...	[more]
W6UMT7	0.000e+0	42.95	DNA-directed RNA polymerase subunit OS=Echinococcu...	[more]
A0A068WMY0	0.000e+0	42.95	DNA-directed RNA polymerase subunit OS=Echinococcu...	[more]
A0A0R3W552	0.000e+0	43.41	DNA-directed RNA polymerase subunit OS=Taenia asia...	[more]
A0A3Q0KQV6	0.000e+0	43.17	DNA-directed RNA polymerase subunit OS=Schistosoma...	[more]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
polr3a	0.000e+0	38.73	polymerase (RNA) III (DNA directed) polypeptide A ...	[more]
polr2a	2.551e-112	34.34	RNA polymerase II subunit A [Source:NCBI gene;Acc:...	[more]
polr2a	7.609e-112	34.34	RNA polymerase II subunit A [Source:NCBI gene;Acc:...	[more]
ENSAMXT00000011874.2	2.483e-25	42.26	pep primary_assembly:Astyanax_mexicanus-2.0:24:124...	[more]
ENSAMXT00000011881.2	8.356e-8	32.98	pep primary_assembly:Astyanax_mexicanus-2.0:24:124...	[more]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 3


Match Name	E-value	Identity	Description
RPO31	0.000e+0	37.14	RNA polymerase III largest subunit C160; part of c...	[more]
RPA190	2.258e-116	32.37	RNA polymerase I largest subunit A190 [Source:SGD;...	[more]
RPO21	3.004e-108	36.99	RNA polymerase II largest subunit B220; part of ce...	[more]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO36291	0.000e+0	39.47	DNA-directed RNA polymerase [Source:UniProtKB/TrE...	[more]
EDO39976	4.048e-103	35.93	DNA-directed RNA polymerase [Source:UniProtKB/TrE...	[more]
EDO39496	1.145e-64	30.29	DNA-directed RNA polymerase [Source:UniProtKB/TrE...	[more]
EDO25572	2.773e-13	26.50	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A8...	[more]
EDO27435	1.462e-11	25.86	DNA-directed RNA polymerase [Source:UniProtKB/TrE...	[more]

BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
polr3a	0.000e+0	39.73	RNA polymerase III subunit A [Source:NCBI gene;Acc...	[more]
polr3a	0.000e+0	39.32	RNA polymerase III subunit A [Source:NCBI gene;Acc...	[more]
polr2a	1.223e-110	34.75	RNA polymerase II subunit A [Source:NCBI gene;Acc:...	[more]
polr2a	1.804e-110	34.75	RNA polymerase II subunit A [Source:NCBI gene;Acc:...	[more]
polr1a	1.888e-74	31.05	RNA polymerase I subunit A [Source:NCBI gene;Acc:1...	[more]

BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000069361.1	0.000e+0	100.00	SMESG000069361.1	[more]
SMESG000010459.1	1.474e-125	32.95	SMESG000010459.1	[more]
SMESG000078620.1	1.073e-117	32.59	SMESG000078620.1	[more]
SMESG000003379.1	2.597e-100	33.33	SMESG000003379.1	[more]
SMESG000021710.1	8.706e-45	35.57	SMESG000021710.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30034401 ID=SMED30034401|Name=DNA-directed RNA polymerase subunit|organism=Schmidtea mediterranea sexual|type=transcript|length=4094bp
GTTGTATAAATGAAATCTTTAGTCAGGCCGGGAACAGAAGATAAGGCTGT
ATGTGCTATCGAATTTGGAATAAATTCAATAGAAGATATAGTTCAGCAAA
GTCATGTTAAAGTTACTAATCATGACATCTACGACAATTTAGCAAAACCT
GCAGAAAATGGTTTAATGGATCAAAGAATGGGAACATGTAGCTCCACTAA
ATGTGTTACATGCGATCGTGAACAAAAATATTGTATGGGACATTTCGGTT
ATATAGATCTTTCAAATTATCTATTTCCATTTGGATTTCTCAAGGATATT
GTAAAAATATTAAAATGCATTTGTAAAACTTGTGGACACATATTACTTAA
CGAACACGATGTTATGAGTCATGAAAAGGAACTTCGAAAACCTAATCTAA
CGTACATTCAAAAGAAAAGTATACGAACTATAATAATAAAGAAATCATCT
AAAATTCGCCGATGTCGCTTTTGCAACGATTCTAATGGTTCTGTTAAAAA
ATTGAAATCTCTTTCAATGATCTGCCATAAAAAATATGCTTTAAAGGAAC
AACAAAAGAAGTTTTTTGAACAATTTGAAAATTATTCCCAAGAAATTAAA
AATCTATTGAATTCTGGCGTTACTCTACTGAGACCTTATGACGTGTTTAA
ATTGTTTCAAGCCATCCCAGTCAAACATTACAAGTTTCTAGGAATGTCTA
ACAAAAAAAACATCAAAGTTTCCAACTTGATATTTAAACACATTCCAGTT
CCCCCGATTTGTATAAGGCCGTCTGCTCAAACATCTTCTGAGAATACCAG
CCGGGAGGACGACATAACGATTTTGCTGCGAATGCAAATCGGTGACAACA
AACTTCATGATATGCATAGCGAATACGCGAGAATGATCAAACCGGATGCG
ACATGCATACGATCAGTGAAAGATAAAAAAGTCATCCGCGGCATGATTCA
AAGATTAGCCGGCAAGAAAGGCCGATTCCGAGGGAATATTATGGGGAAAC
GGACGAATTTCACTAGCCGAACTGTCATATCTCCCGACCCCTCTTTGAAA
ATTAATGAGATTAGCATCCCGGAATATTGTGCAATGAAGCTTACTTTCAC
AGAAACGGCGACAGCTTATAATATCGCACATTTAAAAAAATTAATCCTTA
ACGGCGCTAGAAAGTATCCTGGTGCAGTAGCTTATGCGTCAGGTATTATA
AGCAAGGAACCACAACAGCCAATGAGTCAATTAAAACTGATGATGAACAG
TGAAGTAATGTGGACTAAACTCGATAACGAGAAATGGAGAATAGAGGCGG
CTAGAAAGTTAAAAGTTGGCGACTTCGTTCAACGGCATATTGACAGTACT
GATATTGTGCTTTTCAATCGTCAGCCTTCACTGCACAGGCTGAGTTTCCA
GGCATTTAATATCGTTGTTAAAAAAGAAAAAACTTTCAGTTTTAATCCCT
GTTGCTGCAATCCCTTCAATGCCGATTTCGATGGTGACGAAATGAATGTA
CATTTTCCACAAACCTTTGAAGCAAAAGCCGAAGCAATCGAATTGATCTC
ATCTATAAAAAACACTACAAGTCCTAATAGTGGTGAACCACTTACTGCTC
CTCTGCAAGACATTCTTACAGCTGCATATCTCTTAACCTCCAAGGACACA
TTTTACAATGAACAAGAATTTCGTAATTTGATTTTACCTATCGTAAAATG
CTGTCCTCCCAATAAAATCGTAATGATTCCTCGTCCTATGATAATGAAGC
CAGTGAAATTGTATTCGGGAAAACAACTCATGTCACTAGTTATCTCACCA
TATGGAACATTATCACCCGACTCGAAACGAGTAATTCCAGATTCCAGAAT
AAACCAAATCGTTGAAACTAGTTCCAATCCAGTTGATTACCTCAACCCAA
ATGATACATTGGTTGTAATTCATAATAGTAAATTGATAATGGGACAGTTA
CCGAAGAAATTGCTAGGAGGCGGAAGTAAATTATCGATATTCTTTCGAAT
TCTCAAAGATGTTGGTGATCTTGCAAGTTGTCAAAGCATGGAAAGACTCT
GTCAAATAGCTCTAGCGGATTTGAAATCTCGGGGTTTCAGTTTGGGAATT
ACAGATGTTTCGCCTAGTGCCAAGCTTAGAACAATACAAAAGGAGCTCGT
TGAACAGAATTTTGCAATCTGTGAAGAGTTCATAAAATATTATGAAAATG
GATCCTTGATTTCCGATCCCGGTTGCAGCATTGAGGAAACATTGGAATCG
AAAATCAGTTCACAATTGTCAAAGATTCGTGATGAAGGAGGGAAAGAATG
CAAAACAACTCTACATAAAAGAAATTCTCCATTAATAATGGCTATTTGTG
GGTCAAAAGGCTCTTACATCAATATTTCTCAAATGGTGTTCTGTGTCGGC
CAGCAGATTATTGAAGGGAAACGAGTATCGAATATAAGCGGAACCAATAG
AACACTGATGTATTATCCAGAAAATTGCCGAAGTCCAATGTCAAAGGGAT
TTGTTTCAAACAGTTTTTATTCCGGATTGAATCCAATTGAATTTCTATTC
CACGCTATGAGTGGTCGTGAAGGCTTAATCGACACAGCAGTGAAAACCGC
CGAAACCGGCTATATGCAAAGAAGATTAATCAAATTTCTGGAAGATTTGG
CAATTCGATTTGACAACACTGTTAGAGATTTTACGGGAAATCTTGTGCAA
TTTAAGTACGGAACTGATGGATTTGATCCGTCGAAATTAGAGTCGACCTA
TTGTCCTTGTGATTTTACTAAGGAGCTCTATCATGCATTGCAAGATTACA
CATACAATGAACCGGCACTCGATAATGAAATCCAATATATTTTGAAAGAA
TTTCTAGATTCTCATGAAAGAAAATTTGAAAATCTAGATGAAAACCTAGT
TAAAACGTTATCGGATTATTACAATTCCACTGAAGGTCTGGTATTCGGTA
TCACCAGGTCTCAAATGAAATTATTCATCGACAACTGTTACCAAAAGTAT
TTCAAAGCTATCATTGAACCCGGAACTGCAATTGGTGTGATTTGTGGACA
AAGTGTCGGTGAACCAGCCACTCAAATGACATTGAAAACCTTTCATTTTG
CTGGGGTTGCCAGCATGAATATCACTAGAGGTGTACCAAGAATGCAGGAA
ATTATGAACGCAGTTGCGAACATTAAAACGCCAATCATTACCGTATACCT
GACAGACGATGTGAGGGAATCTTTCGCAAAAACGATGCAATTGAAAATAC
AACCAGTATTTCTTAAGAACGTTATTATTCAATCGCAACTTCTGGCCTGT
TCAACTGGAATGTTCTTTTACTTGCATTTAAACAATGTTAAAATGAACCA
ATTGGCTATACTTCCAGAAGACGTGGAGAAAGCATTGAAATCTGTAAAAA
TACAAAATAACGCAGTCAGAGTGGTTTATAAAGAAACCGGACGGGTGTAT
ATTGAAGTTTTTTCAGAAAAAAAAATAAACTGTCAAAAAGTTCTAAAGGT
TATTGGGAAAGTGCAAATAATGGGAGTAAAGAACGTTAAGAGAACTGTTA
TTCAAAGAAATGAGCAAAACAGACACAATATCTATGTTGAAGGTGGTAAA
TTATTGGATCTATTCCAAATCGAAGGAGTTGATGGAATTAACACACACAG
TAATCATATTCTCGAGATATATGAAGTATTGGGCATTGATGCTGCAAAAG
ATATGATTATTAATGAGCTAAATGCTGTGATGGGAGCTCACAATCTCACT
CCAGATATCCGCCATGTCATGCTATTAGCTGATATTATGTGCTATACGGG
TCAAATATGCGGATTTCAAAGAAGCGGAATTAGCAAATCAAAGAATAGCG
TTCTCTGTCTGGCCTCGTTTGAGAAAACCCTTGATCATTTGCTCGAAGCC
GCATATCACAATCAGAAAGACAAACTTCATGGAATAAGTGATAGCCTTAC
ATTTGGGAAAACGACTCCAATCGGCACTGGAATGTCGACTATAATTTTCA
ATGATAGTAGTGAGAAAGACCTTCGACGTCGTCCGACTTTATCCGATTTA
ATATGAAACTATTTATTAATAAAATTTACTTTGTTGAAAAAAAA

protein sequence of SMED30034401-orf-1

>SMED30034401-orf-1 ID=SMED30034401-orf-1|Name=SMED30034401-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1349bp
MKSLVRPGTEDKAVCAIEFGINSIEDIVQQSHVKVTNHDIYDNLAKPAEN
GLMDQRMGTCSSTKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKI
LKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQKKSIRTIIIKKSSKIR
RCRFCNDSNGSVKKLKSLSMICHKKYALKEQQKKFFEQFENYSQEIKNLL
NSGVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPI
CIRPSAQTSSENTSREDDITILLRMQIGDNKLHDMHSEYARMIKPDATCI
RSVKDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINE
ISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKE
PQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIV
LFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFP
QTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYN
EQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGT
LSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPKK
LLGGGSKLSIFFRILKDVGDLASCQSMERLCQIALADLKSRGFSLGITDV
SPSAKLRTIQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKIS
SQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQI
IEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAM
SGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKY
GTDGFDPSKLESTYCPCDFTKELYHALQDYTYNEPALDNEIQYILKEFLD
SHERKFENLDENLVKTLSDYYNSTEGLVFGITRSQMKLFIDNCYQKYFKA
IIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMN
AVANIKTPIITVYLTDDVRESFAKTMQLKIQPVFLKNVIIQSQLLACSTG
MFFYLHLNNVKMNQLAILPEDVEKALKSVKIQNNAVRVVYKETGRVYIEV
FSEKKINCQKVLKVIGKVQIMGVKNVKRTVIQRNEQNRHNIYVEGGKLLD
LFQIEGVDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDI
RHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYH
NQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLSDLI*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000429	neoblast
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR042102	RNA_pol_Rpb1_3_sf
IPR038120	Rpb1_funnel_sf
IPR006592	RNA_pol_N
IPR007081	RNA_pol_Rpb1_5
IPR007080	RNA_pol_Rpb1_1
IPR007066	RNA_pol_Rpb1_3
IPR000722	RNA_pol_asu
IPR007083	RNA_pol_Rpb1_4

Vocabulary: **molecular function**
Term	Definition
GO:0003899	DNA-directed 5'-3' RNA polymerase activity
GO:0003677	DNA binding
GO:0016740	transferase activity
GO:0016779	nucleotidyltransferase activity

Vocabulary: **biological process**
Term	Definition
GO:0006351	transcription, DNA-templated

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 949..969
None	No IPR available	GENE3D	G3DSA:2.20.25.410		coord: 878..914 e-value: 4.7E-9 score: 37.7
None	No IPR available	GENE3D	G3DSA:1.10.150.390		coord: 1281..1325 e-value: 1.8E-14 score: 55.2
None	No IPR available	GENE3D	G3DSA:2.40.40.20		coord: 319..510 e-value: 6.8E-64 score: 217.0
None	No IPR available	GENE3D	G3DSA:1.20.120.1280		coord: 8..134 e-value: 2.1E-20 score: 74.9
None	No IPR available	GENE3D	G3DSA:3.30.1490.180		coord: 362..446 e-value: 6.8E-64 score: 217.0
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 12..1327
None	No IPR available	PANTHER	PTHR19376:SF32	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1	coord: 12..1327
None	No IPR available	SUPERFAMILY	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 14..1331
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 238..543 e-value: 1.2E-108 score: 376.9
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 839..1281 e-value: 3.4E-82 score: 275.9
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 329..514 e-value: 5.1E-54 score: 183.0
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	G3DSA:1.10.274.100		coord: 521..692 e-value: 1.1E-80 score: 273.0
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 12..281 e-value: 1.6E-48 score: 165.6
IPR007066	RNA polymerase Rpb1, domain 3	PFAM	PF04983	RNA_pol_Rpb1_3	coord: 518..700 e-value: 3.3E-22 score: 79.1
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	G3DSA:1.10.132.30		coord: 693..840 e-value: 1.1E-80 score: 273.0
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 725..832 e-value: 2.4E-25 score: 88.5

Main menu

DNA-directed RNA polymerase subunit

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 5

Owlery

blazegraph-runner