HDNR domain-containing protein

Overview
NameHDNR domain-containing protein
Smed IDSMED30034342
Length (bp)2368
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of HDNR domain-containing protein (SMED30034342) t-SNE clustered cells

Violin plots show distribution of expression levels for HDNR domain-containing protein (SMED30034342) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of HDNR domain-containing protein (SMED30034342) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for HDNR domain-containing protein (SMED30034342) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30034342

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30034342SMESG000008952.1 dd_Smed_v4_6279_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30034342SMESG000008952.1 dd_Smed_v4_6279_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30034342SMESG000008952.1 dd_Smed_v4_6279_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30034342SMESG000008952.1 dd_Smed_v4_6279_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30034342SMESG000008952.1 dd_Smed_v6_6279_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
epidermisSMED30034342SMESG000008952.1 dd_Smed_v4_6279_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of HDNR domain-containing protein vs. Ensembl Human
Match: C3orf84 (chromosome 3 open reading frame 84 [Source:HGNC Symbol;Acc:HGNC:44666])

HSP 1 Score: 72.0182 bits (175), Expect = 1.220e-13
Identity = 44/125 (35.20%), Postives = 62/125 (49.60%), Query Frame = 1
Query:   94 ITGSWFPSGYYGHFRNIPRNEFCGEYRQLAKPQPPKVFITRIKEKPTSHIFSKHDNRFSNLSDATYLDMSSPSSRD------QRTTTYRYAYGNSNI-NKDVIEKSYEESLHARPAPVIDLVKLH 447
            + GSW  +G+YGH+R+  ++E   EY   AKPQPP VF+ R +E    H FSKHDNR S   +  Y  +     R       QR T  R+A     +  +  +E SY+     RP P +  +  H
Sbjct:    5 LVGSWHNNGFYGHYRSQFKSESAREYHLAAKPQPPAVFLQRCQEPAQRHFFSKHDNRTSFDKEGPYCLLQGIGRRKDLERLWQRHTFLRWAPCEIELRQQGPLESSYQADF--RPGPGLSGLPQH 127          
BLAST of HDNR domain-containing protein vs. Ensembl Human
Match: C3orf84 (chromosome 3 open reading frame 84 [Source:HGNC Symbol;Acc:HGNC:44666])

HSP 1 Score: 69.3218 bits (168), Expect = 9.882e-13
Identity = 43/125 (34.40%), Postives = 62/125 (49.60%), Query Frame = 1
Query:   94 ITGSWFPSGYYGHFRNIPRNEFCGEYRQLAKPQPPKVFITRIKEKPTSHIFSKHDNRFSNLSDATYLDMSSPSSRD------QRTTTYRYAYGNSNI-NKDVIEKSYEESLHARPAPVIDLVKLH 447
            + GSW  +G+YGH+R+  ++E   EY   AKPQPP VF+ R +E    H FSKHDNR ++     Y  +     R       QR T  R+A     +  +  +E SY+     RP P +  +  H
Sbjct:    5 LVGSWHNNGFYGHYRSQFKSESAREYHLAAKPQPPAVFLQRCQEPAQRHFFSKHDNR-TSFDKGPYCLLQGIGRRKDLERLWQRHTFLRWAPCEIELRQQGPLESSYQADF--RPGPGLSGLPQH 126          
BLAST of HDNR domain-containing protein vs. Ensembl Xenopus
Match: csrp1 (cysteine and glycine rich protein 1 [Source:Xenbase;Acc:XB-GENE-941448])

HSP 1 Score: 82.8037 bits (203), Expect = 3.653e-17
Identity = 35/56 (62.50%), Postives = 47/56 (83.93%), Query Frame = 1
Query:   97 TGSWFPSGYYGHFRNIPRNEFCGEYRQLAKPQPPKVFITRIKEKPTSHIFSKHDNR 264
            +GSWFP+G++GHFR+  RN+   EYR+ A+P+PP VF  RIKE+PT+HIFS+HDNR
Sbjct:    6 SGSWFPTGFHGHFRSHMRNDIYQEYRREARPEPPHVFEKRIKEQPTNHIFSRHDNR 61          
BLAST of HDNR domain-containing protein vs. Ensembl Mouse
Match: BC048562 (cDNA sequence BC048562 [Source:MGI Symbol;Acc:MGI:3618861])

HSP 1 Score: 69.3218 bits (168), Expect = 6.408e-13
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   94 ITGSWFPSGYYGHFRNIPRNEFCGEYRQLAKPQPPKVFITRIKEKPTSHIFSKHDNRFS 270
            + GSW  SG+YGH+R   ++E  GEYR  AKP PP VF+ R +E    H FSKHDNR S
Sbjct:    5 LIGSWHNSGFYGHYRGQVKSESAGEYRLAAKPPPPAVFLQRCEEPTKQHYFSKHDNRTS 63          
BLAST of HDNR domain-containing protein vs. UniProt/SwissProt
Match: sp|H3BNL1|CC084_HUMAN (Uncharacterized protein C3orf84 OS=Homo sapiens OX=9606 GN=C3orf84 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.746e-12
Identity = 43/125 (34.40%), Postives = 62/125 (49.60%), Query Frame = 1
Query:   94 ITGSWFPSGYYGHFRNIPRNEFCGEYRQLAKPQPPKVFITRIKEKPTSHIFSKHDNRFSNLSDATYLDMSSPSSRD------QRTTTYRYAYGNSNI-NKDVIEKSYEESLHARPAPVIDLVKLH 447
            + GSW  +G+YGH+R+  ++E   EY   AKPQPP VF+ R +E    H FSKHDNR ++     Y  +     R       QR T  R+A     +  +  +E SY+     RP P +  +  H
Sbjct:    5 LVGSWHNNGFYGHYRSQFKSESAREYHLAAKPQPPAVFLQRCQEPAQRHFFSKHDNR-TSFDKGPYCLLQGIGRRKDLERLWQRHTFLRWAPCEIELRQQGPLESSYQADF--RPGPGLSGLPQH 126          
BLAST of HDNR domain-containing protein vs. TrEMBL
Match: A0A1I8JCM3 (HDNR domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig029886g2 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.877e-19
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = 1
Query:  109 FPSGYYGHFRNIPRNEFCGEYRQLAKPQPPKVFITRIKEKPTSHIFSKHDNRFSNLSDATYLDMS------SPSSRDQRTTTYRYAYG----NSNINKDVIEKSYEESLHARPAPVIDLVKLHRRCKSSYD 471
            FPSGYYGH R+  RN+   EYR+LAKPQPP+VF+TR+K+ P  HIFSKHDNR+S ++DATYLD+        P SR  R T    ++     N     +    +Y+++  A   P   LV    R K+S+D
Sbjct:    1 FPSGYYGHNRDSHRNDIYTEYRRLAKPQPPRVFLTRMKDDPVRHIFSKHDNRYSFITDATYLDLGVGKKRKVPESRCNRVTDDLISWAPQMRNLKEGAEPALSAYKQAFTAGRQPAQLLVS---RPKTSFD 128          
BLAST of HDNR domain-containing protein vs. TrEMBL
Match: A0A210Q949 (HDNR domain-containing protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT11260 PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.323e-18
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   88 ENITGSWFPSGYYGHFRNIPRNEFCGEYRQLAKPQPPKVFITRIKEKPTSHIFSKHDNRFSNLSDATYLD 297
            E I G+WFPSGYYGHFR+  RN+FC EYR LA+PQPPK F  R K+    H+FS HDNR S L+DA Y +
Sbjct:    8 EQIVGTWFPSGYYGHFRSKSRNDFCNEYRNLARPQPPKQFFNRSKQPTPRHVFSHHDNRESFLNDALYFE 77          
BLAST of HDNR domain-containing protein vs. TrEMBL
Match: A0A267G2W3 (HDNR domain-containing protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig005280g1 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.426e-17
Identity = 56/129 (43.41%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  115 SGYYGHFRNIPRNEFCGEYRQLAKPQPPKVFITRIKEKPTSHIFSKHDNRFSNLSDATYLDMS------SPSSRDQRTTTYRYAYG----NSNINKDVIEKSYEESLHARPAPVIDLVKLHRRCKSSYD 471
            SGYYGH R+  RN+   EYR+LAKPQPP+VF+TR+K+ P  HIFSKHDNR+S ++DATYLD+        P SR  R T    ++     N     +    +Y+++  A   P   LV    R K+S+D
Sbjct:    1 SGYYGHNRDSHRNDIYTEYRRLAKPQPPRVFLTRMKDDPVRHIFSKHDNRYSFITDATYLDLGVGKKRKVPESRCNRVTDDLISWAPQMRNLKEGAEPALSAYKQAFTAGRQPAQLLVS---RPKTSFD 126          
BLAST of HDNR domain-containing protein vs. TrEMBL
Match: A0A2C9KV37 (HDNR domain-containing protein OS=Biomphalaria glabrata OX=6526 GN=106077901 PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.494e-17
Identity = 65/197 (32.99%), Postives = 88/197 (44.67%), Query Frame = 1
Query:   91 NITGSWFPSGYYGHFRNIPRNEFCGEYRQLAKPQPPKVFITRIKEKPTSHIFSKHDNRFSNLSDATYLD--MSSPSSRDQR----------------------------------------------------TTTYRYAYGNSNINKDVIEKSYEESLHARPAPVIDLVKLHRRCKSSYDLSG-RESVADCLIWHQ 516
            N  GSWFP+GYYGH+R+  R +F  EYRQLAKPQPP  FI R  +  T+H FS HDN+ +++ DA+Y +  MS  S+ D +                                                    TTTYR  +G    N+D+I     E+L         L   HR+ ++    S  RESVA CL W++
Sbjct:    7 NNVGSWFPTGYYGHYRSRVRTDFLNEYRQLAKPQPPNRFIHRASQPVTAHAFSLHDNKNASIVDASYFEQFMSLLSTIDNKFFDPTFIAWCPNKINMKAGRPLTSTYRHDFRLEESNFQMLVKRPKTSFDGPPTTTYRTVHGADAPNRDLINAMNNEALM--------LTTQHRQRQARLRKSDYRESVASCLSWYR 195          
BLAST of HDNR domain-containing protein vs. TrEMBL
Match: A0A1S3HXU3 (uncharacterized protein LOC106158822 OS=Lingula unguis OX=7574 GN=LOC106158822 PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.778e-17
Identity = 65/199 (32.66%), Postives = 86/199 (43.22%), Query Frame = 1
Query:   94 ITGSWFPSGYYGHFRNIPRNEFCGEYRQLAKPQPPKVFITRIKEKPTSHIFSKHDNRFSNLSDATY-------------------------------LDMSSP-------------SSRDQ---------------RTTTYRYAYGNSNINKDVIEKSYEESLHARPAPVIDLVKLHRRCKSSYDLSGRESVADCLIWH 513
            I G+WFP+GYYGHFR+  RN++  E+R LAKP PPK FI R  E    H+FS HDNR + L+DA Y                               LD S P             ++R+Q                TTTYRYA+G  N N+D +     + L         L    R+ +  +    RESVA C+ W+
Sbjct:    7 IEGTWFPTGYYGHFRSKSRNDYINEFRYLAKPSPPKKFIKRSGENVARHVFSHHDNREAFLNDALYFEQGLGRRRVKTPYVSTFKPDLITWMPHKKELDRSEPHVSTYKLNYNVHANAREQLFIKRPKSSFDPDFKATTTYRYAHGKDNPNRDTLCAMNNQIL---------LTTGQRQLR-PHTAKARESVASCMSWN 195          
BLAST of HDNR domain-containing protein vs. Ensembl Nematostella
Match: EDO42577 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S150])

HSP 1 Score: 67.781 bits (164), Expect = 1.587e-12
Identity = 31/73 (42.47%), Postives = 49/73 (67.12%), Query Frame = 1
Query:   91 NITGSWFPSGYYGHFRNIPRNEFCGEYRQLAKPQPPKVFITRIKEKPTSHIFSKHDNR--FSNLSD-ATYLDM 300
            ++TGSW+ +G++GH+R+  R +F   +RQ  KP PP+ F+   KE+  SH+FS+HDNR   S++ D  T+  M
Sbjct:   13 DLTGSWYNTGFHGHYRSRTRTDFAIPFRQRVKPAPPQKFLNYSKERSNSHLFSRHDNRNTHSDMGDLETFFGM 85          
BLAST of HDNR domain-containing protein vs. Planmine SMEST
Match: SMESG000008952.1 (SMESG000008952.1)

HSP 1 Score: 190.66 bits (483), Expect = 2.182e-55
Identity = 114/211 (54.03%), Postives = 124/211 (58.77%), Query Frame = 1
Query:   64 MTAIDNRRENITGSWFPSGYYGHFRNIPRNEFCGEYRQLAKPQPPKVFITRIKEKPTSHIFSKHDNRFSNLSDATYLDMSSPSSRDQRTT--------------------TYRYAYGN---SNI---NKDVIEKSYEESLHARPAPV----------IDLVK------LHRRCKSSYDL-------------SGRESVADCLIWHQIERSS 531
            MTAIDNRRENITGSWFPSGYYGHFRNIPRNEFCGEYRQLAKPQPPKVFITRIKEKPTSHIFSKHDNRFSNLSDATYLDM     R    T                     YR  + +   SN+   N ++++ S   S   R               D+++      LH R     DL             SGRESVADCLIWHQIERSS
Sbjct:    1 MTAIDNRRENITGSWFPSGYYGHFRNIPRNEFCGEYRQLAKPQPPKVFITRIKEKPTSHIFSKHDNRFSNLSDATYLDMGIGKKRRVANTQTFHSNSDLLSWTMHPTEYSVYRSTFTSHAPSNLIIPNLNIVKSSSPSSRDQRTTTYRYAYGNSNINKDVIEKSYEESLHARPAPVIDLVKLHRRCKSSYDLSGRESVADCLIWHQIERSS 211          
The following BLAST results are available for this feature:
BLAST of HDNR domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2
Match NameE-valueIdentityDescription
C3orf841.220e-1335.20chromosome 3 open reading frame 84 [Source:HGNC Sy... [more]
C3orf849.882e-1334.40chromosome 3 open reading frame 84 [Source:HGNC Sy... [more]
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BLAST of HDNR domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HDNR domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HDNR domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HDNR domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
csrp13.653e-1762.50cysteine and glycine rich protein 1 [Source:Xenbas... [more]
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BLAST of HDNR domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
BC0485626.408e-1354.24cDNA sequence BC048562 [Source:MGI Symbol;Acc:MGI:... [more]
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BLAST of HDNR domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 1
Match NameE-valueIdentityDescription
sp|H3BNL1|CC084_HUMAN4.746e-1234.40Uncharacterized protein C3orf84 OS=Homo sapiens OX... [more]
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BLAST of HDNR domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1I8JCM32.877e-1944.27HDNR domain-containing protein OS=Macrostomum lign... [more]
A0A210Q9491.323e-1861.43HDNR domain-containing protein OS=Mizuhopecten yes... [more]
A0A267G2W31.426e-1743.41HDNR domain-containing protein (Fragment) OS=Macro... [more]
A0A2C9KV371.494e-1732.99HDNR domain-containing protein OS=Biomphalaria gla... [more]
A0A1S3HXU32.778e-1732.66uncharacterized protein LOC106158822 OS=Lingula un... [more]
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BLAST of HDNR domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HDNR domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HDNR domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HDNR domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO425771.587e-1242.47Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of HDNR domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HDNR domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000008952.12.182e-5554.03SMESG000008952.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30034342 ID=SMED30034342|Name=HDNR domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2368bp
ATTTATTTTAATGCTTGTTTTAATATGTTAATTTAATCGTACAATGGCAA
CTGAATAATATAAATGACTGCAATTGATAATAGGAGAGAAAACATTACTG
GATCATGGTTTCCTTCTGGATATTATGGTCATTTCAGAAATATTCCTAGA
AATGAGTTCTGTGGAGAATACCGTCAGCTGGCGAAACCACAGCCACCTAA
AGTATTTATCACCAGAATCAAAGAAAAACCAACCAGTCACATTTTCTCAA
AACATGACAACAGATTCAGTAATTTGTCCGATGCTACATATTTGGATATG
TCGTCCCCTTCATCAAGGGATCAGCGCACGACTACATATCGATACGCTTA
TGGCAATTCAAATATAAATAAAGATGTTATTGAAAAAAGTTACGAAGAAT
CATTACATGCTCGTCCAGCTCCAGTTATAGATTTGGTAAAATTACATAGA
CGATGTAAATCATCTTATGATTTATCTGGGCGTGAGAGCGTGGCAGATTG
CTTAATCTGGCACCAAATTGAAAGATCCTCAAGTTAGTATTTTCTTTGGG
CTGGTCGTTAAATTATTAATATTAAAACAATTGTCAGTAAAGTAGTCAGA
AACAATAAAAAAATATTAATTTTTTTAACTAATAATGGAAAATAACTTTA
ATTTTGAAATTAAAAGGCAGATAAATTTAGTTAAAAAGAATAAAATCTTC
AAATTCACATTTAAGCAATTTTCTTAAGCAGATTATTTCATAGTAAAAAA
TTATCATTCTTGTTTGAAATTTGCAACAGAGGCTAATAATACTATTTACG
TATGATATTTGGGGTTAGTCTAGATTAGTGCAAAAGAAATTTGATTATGC
AGGAAATTCAACTCAAATCAATAAAACTGGTAAAACTTATAAAGATTCAG
AATTTATAAATAAAGTACAAATATTAATTAAAAATTGACATTTTGGGTTA
AACAGTTATGAGCGAACAGCAAATAATGAAGATAAAGAAGGTTGCCTTCC
TAATTATTTTTTTTTCAAAAAGATAAGGCTTACTGAATTAGTTTACTATT
TGTTAATATAATTATTTGCCTACGAAAATTTAGTATAAAACTCATAGTCA
CTGGTAGTCAATGGTCAGTTGTAGGAAGAGCGAACTAAATTTAGAGATTA
AAGGCAGTTTCTCATTGAGATTTGTAGTCGGATTATCTATTTTTAAAAGG
TGTCGATCAAAAGTGTAGTTGACGATATTAAAAATCGAATCGAAATTCAA
TAAATTATTTTGTATTGGGTTTTATTTGGTTATGTGAAACAAAGAGCACG
AAAAATCAAAGGCAATACTGACTTAAATAATAATAACCTATTAATATAGA
TATCCTGTTGCTTTAACACACTTTGAATTGTTTATTTTGCTTTATTTACT
ACAGTAGCAACTTGTGAGCTTTCTGGCACAGTCGGTTCTGATTAGTCATG
CTTTTTTCCAGCCAATCAGAAGCGATTGTGTCAGAAAGCTCACCAGTCAC
ACCACTTACGACTGCAACTCAAATTGTATTTTCCGATTCCTCAGAAATAA
TGTCGCTGTATAATGTCGCTAAATAGTGCCTGCCTGCCTGCCATTGTCGT
CCACCCTAATCTCAATTTCTAGCATATTTCAATAAATAAAAACCGAAACC
GGCTGAATAATGATATTAACGAGATAGAATATAAATATGGAGTAAGAAGG
TAAGGAATATTGGTGAAATCCGGAGCCTCAATGTCATTGAGGCAATTCCA
GTTCTAGCAAAATATTACAAAAATTATCAAATATTTACATGCAATAACCA
AATTTATTGATTTATTAAGATTTTGTAAACACTTTGACACCTAAAAATTT
TATTTTTTAACTACTTGATAAGCTTATAAATGTAAAAAAAAAACTGAATT
CCGGATAAATGCATTAATAAATTTCATTTTCAATAAGCTCATTTAGCATA
TAGATAGAATTTCATCAATGAATGAATGAAGGCATTTTCACATAGCGAGA
ATCTTTTACTCATTATTCTAGTCAGATTTTAAATTCCATCGCATTATTTT
ATAAATATTTAGATATAAAATAATGACGATAATAAATATAATAATAAAGG
AACTGTTTTTGGTTTTCACATTTGATTGCTTTTCATTTTGACATTAAGAA
TTTTATAATTTAACTCTGAATCAATAATGATATCGATAGTTTAATAATGA
TGATTGCTAGCTACAAAACTACTGCTGTTAATCGGATCCATTAAAAAAGG
CAATATTTTTAATACAATAATATATTTAAACAAATTCATAATAATCTATT
TGAGGATTTTCTATAAAAATAATTAATACATAAGTAAGGATTTCAATATA
CAGTCAACTAAATACCTC
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protein sequence of SMED30034342-orf-1

>SMED30034342-orf-1 ID=SMED30034342-orf-1|Name=SMED30034342-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=158bp
MTAIDNRRENITGSWFPSGYYGHFRNIPRNEFCGEYRQLAKPQPPKVFIT
RIKEKPTSHIFSKHDNRFSNLSDATYLDMSSPSSRDQRTTTYRYAYGNSN
INKDVIEKSYEESLHARPAPVIDLVKLHRRCKSSYDLSGRESVADCLIWH
QIERSSS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000418head
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR029369HDNR