TPA_inf: C3H-zinc finger-containing protein 1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30034336 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Xenopus
Match: rfc2 (replication factor C subunit 2 [Source:Xenbase;Acc:XB-GENE-999114]) HSP 1 Score: 50.0618 bits (118), Expect = 5.048e-6 Identity = 20/50 (40.00%), Postives = 29/50 (58.00%), Query Frame = 2 Query: 128 RKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSH 277 R+ CR + + GGC YG +C F H + + C+ F + C +G CHFSH Sbjct: 145 RERCRLWRSPGGCPYGARCHFQHPKSSREVCRHFAALGDCPYGARCHFSH 194
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Xenopus
Match: zfp36l2.2 (zinc finger protein 36, C3H type-like 2, gene 2 [Source:NCBI gene;Acc:733887]) HSP 1 Score: 49.2914 bits (116), Expect = 7.783e-6 Identity = 20/50 (40.00%), Postives = 28/50 (56.00%), Query Frame = 2 Query: 128 RKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSH 277 R+ CR + + GGC YG +C F H + C+ F + C +G CHFSH Sbjct: 145 REQCRLWRSPGGCPYGARCHFQHPKGFREACRHFAAHGDCPYGARCHFSH 194
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. UniProt/SwissProt
Match: sp|O22243|C3H31_ARATH (DExH-box ATP-dependent RNA helicase DExH8 OS=Arabidopsis thaliana OX=3702 GN=At2g47680 PE=2 SV=2) HSP 1 Score: 54.299 bits (129), Expect = 2.749e-6 Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 2 Query: 125 ERKICRYFNTLGGCWYGEKCKFIHLL-NKKPPCKFFGSSSGCRFGDSCHFSH 277 E +C YF G C G +C F H L + +P CKFF SS GCR G+SC FSH Sbjct: 729 EAPVCVYFLN-GYCNRGGQCTFTHTLQSTRPACKFFASSQGCRNGESCLFSH 779
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. TrEMBL
Match: F9W2W1 (C3H-zinc finger-containing protein 1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 805.053 bits (2078), Expect = 0.000e+0 Identity = 438/455 (96.26%), Postives = 439/455 (96.48%), Query Frame = 2 Query: 113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGIISNVTSNGASYNNRLPIEASGDSPEICGXXXXXXXXXXXXXXXXXIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 1477 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGI I+ASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV Sbjct: 1 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGI----------------IKASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 439
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. TrEMBL
Match: A0A0V0JC52 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=TR139554 PE=4 SV=1) HSP 1 Score: 397.127 bits (1019), Expect = 6.642e-127 Identity = 216/364 (59.34%), Postives = 253/364 (69.51%), Query Frame = 2 Query: 113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFF--GSSSGCRFGDSCHFSHERTPFKSVENYENGITDDI-KEDYKENLNPSELTGTNNNNM------------------------------------EQNLNISAT-----NLEIMVNNTP---VSEVT---------IDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRK 1036 MSD E+KICRYFNTLGGCWYG+ CKF+H+ K+PPCKFF SS+GCRFG+SCHFSH+R P K VEN +N TDD KE KEN++PS ++GTNNNNM EQ L + N E +V+ +S++T D ++ ++ + CGSCKR+LD++ NESYCN+LKDHYLE FL+KEGDHVK VK KAAL+PGQMYWCK CILIFEKPWSLFQHMADKAKG KVQRWE+KIHLDW+D VAGLMAG+DLGLFS KLR DLR LLADQHT+EEEME AAV AAAM+QWL P I +PWRL QREMMRKIE L+RQM RK Sbjct: 1 MSDPEKKICRYFNTLGGCWYGDTCKFLHIPEKRPPCKFFCDRSSAGCRFGESCHFSHDRVPVKPVEN-DNMKTDDTSKEVLKENMDPSNVSGTNNNNMTHPTSNCLKICDPPSQLTAEKPSADPETAEELPEFAEQALKTVSECPVEDNPEPIVDEEEKELISQLTDVPDFVPSNTDLQAYQSVPADMPILCGSCKRVLDRRGNESYCNLLKDHYLECFLEKEGDHVKCVKSKAALEPGQMYWCKACILIFEKPWSLFQHMADKAKGTKVQRWERKIHLDWIDNVAGLMAGHDLGLFSPAKLRTDLRTLLADQHTVEEEMEAAAVAAAAMVQWLAP--ISSPWRLHQREMMRKIENLHRQMLRK 361
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. TrEMBL
Match: A0A0R3UG03 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS6102 PE=4 SV=1) HSP 1 Score: 372.859 bits (956), Expect = 3.088e-118 Identity = 198/351 (56.41%), Postives = 246/351 (70.09%), Query Frame = 2 Query: 113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGS--SSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNL------------------------------------EIMVNNTPVSEVTID---FSKESN-----IANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQM 1027 M+D E+KICRYFN LGGCWYG+ C F+H+ +K+PPCKFF SSGCRFG++CHFSH+ P ++VE NGI ++ KE P +G NNNNM + ++ T+ E+ N++ + + +D F+ + N +A + ++ CG+CK++L+++ +ESYCN+LKDHYLE FLDKEGDHVK VK KAALDPGQMYWCK+CILIFEKPWSLFQHMADKAKG KVQRWEKK+HLDW+D+VAGLMAG+DLGLFSL KLR DLRNLLADQHT+EEEME AAV AAAM+QWL P I +PWRL QREMMRKIE LNR + Sbjct: 1 MADPEKKICRYFNALGGCWYGDNCNFLHIPDKRPPCKFFWDKLSSGCRFGENCHFSHDGAPLRTVEQ-SNGIFSISEDALKEKPAPENASGRNNNNMAISSRLTITDPPKPSEKQREVDSGEEVTSGEEKNKGSATAPTEGFESELPTNDSDLMQRLVDLPEFTPDPNFQQDYLAFDSQIMCGTCKQILERRGSESYCNLLKDHYLECFLDKEGDHVKCVKLKAALDPGQMYWCKSCILIFEKPWSLFQHMADKAKGTKVQRWEKKVHLDWIDSVAGLMAGHDLGLFSLMKLRTDLRNLLADQHTMEEEMEAAAVAAAAMVQWLTP--ISSPWRLHQREMMRKIENLNRHI 348
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. TrEMBL
Match: W6UJS0 (Uncharacterized protein OS=Echinococcus granulosus OX=6210 GN=EGR_06769 PE=4 SV=1) HSP 1 Score: 362.073 bits (928), Expect = 6.513e-114 Identity = 200/355 (56.34%), Postives = 244/355 (68.73%), Query Frame = 2 Query: 113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFF--GSSSGCRFGDSCHFSHERTPFKSVEN--YENGITDDIKEDYKENLNPSELTGTNNNNM----------------------EQNLNISATNLEIMVNNTPVS--EVTID-----------------FSKESNIANE-----IEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQM 1027 M D ++KICRYFN +GGCWYG+ C F+H+ +K+PPCKFF SS+GCRFG++CHFSH+ K VE + + +++ +D KE+ N S G NNNNM + + + A + E + NNT S E D F +SN E ++ CG+CK++L+++ NESYCN+LKDHYLE FLDKEGDHVK VK KAAL+PGQMYWCK+CILIFEKPWSLFQHMADKAKG KVQRWEKK+HLDW+D+VAGLMAG+DLGLFSL KLR DLRNLLADQHT+EEEME AAV AAAM+QWL P I +PWRL QREMMRKIE +RQM Sbjct: 1 MGDPDKKICRYFNAVGGCWYGDNCNFLHIPDKRPPCKFFWDKSSTGCRFGENCHFSHDCASLKVVEQPICKVPLPNEVLKDNKESGNTS---GRNNNNMAISSRLIITEPPKTADSSKSSGDTSAEVVANSEEKINNNTVTSAEEAVADLCPHDKDLMPKLMELSEFPSDSNFQQEQLTLDSQIMCGTCKQILERRGNESYCNLLKDHYLECFLDKEGDHVKCVKLKAALEPGQMYWCKSCILIFEKPWSLFQHMADKAKGAKVQRWEKKVHLDWIDSVAGLMAGHDLGLFSLMKLRTDLRNLLADQHTMEEEMEAAAVAAAAMVQWLAP--ISSPWRLHQREMMRKIENFHRQM 350
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. TrEMBL
Match: A0A564Y9N2 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS4141 PE=4 SV=1) HSP 1 Score: 347.051 bits (889), Expect = 1.393e-108 Identity = 187/384 (48.70%), Postives = 251/384 (65.36%), Query Frame = 2 Query: 113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFF--GSSSGCRFGDSCHFSHERTPFKSVENYENGITD--------DIKEDYKEN-------------------LNPSELTGTNNNNMEQNLNISATNLEIMVNN-----------TPVSEVTIDFS----KESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLT-GMGANNFVLGPSNVPGQISG 1129 M+DTE+KICRYFNT+GGCWYG+ C F+H+ +K+PPCKFF SS+GC +G++CHFSH K VE + ++ + +D +E+ +P + + ++ + IS + + + NN + V++V F+ ++ + + ++ CG+CKR+L+++ NESYCN+LKDHYLE FLDK+GDHVK VK KAAL+ GQMYWCK+CILIFEKPWSLFQHMADKAKG KVQRWEKK+HLDW+D+VAGLMAG+DLGLFSL KLR DLRNLLADQ+T E + AAAM+QWL P T NPWR+ QRE+MRKIE L+RQ+ R+ G + G++NF+ PS +IS Sbjct: 1 MADTEKKICRYFNTIGGCWYGDTCNFLHIPDKRPPCKFFWEKSSNGCIYGENCHFSHASGSLKLVERSISKFSNTEKLFGFYQVPKDSQESKCNSDRNNNSMAISSRLIISDPPQTRDCTKDPIDLQVEISDSFITPVDNNREANGENNDVLSMVADVKECFADSKFQQEQLTLDSQIMCGTCKRVLERRGNESYCNLLKDHYLECFLDKDGDHVKCVKMKAALEAGQMYWCKSCILIFEKPWSLFQHMADKAKGVKVQRWEKKVHLDWIDSVAGLMAGHDLGLFSLMKLRIDLRNLLADQYT---MEEEMEMAAAAMVQWLVPITT-NPWRIHQREVMRKIENLHRQLVRRAGGAAELTRVALAAGSSNFI-PPSLYGSRISS 379
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Planmine SMEST
Match: SMESG000004045.1 (SMESG000004045.1) HSP 1 Score: 774.237 bits (1998), Expect = 0.000e+0 Identity = 427/455 (93.85%), Postives = 427/455 (93.85%), Query Frame = 2 Query: 113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGIISNVTSNGASYNNRLPIEASGDSPEICGXXXXXXXXXXXXXXXXXIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 1477 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWG PSN GIISNVTSNGASYNNRLPIEASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV Sbjct: 1 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWG-------------PSN---------------GIISNVTSNGASYNNRLPIEASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 427
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Planmine SMEST
Match: SMESG000004039.1 (SMESG000004039.1) HSP 1 Score: 770.385 bits (1988), Expect = 0.000e+0 Identity = 425/455 (93.41%), Postives = 426/455 (93.63%), Query Frame = 2 Query: 113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGIISNVTSNGASYNNRLPIEASGDSPEICGXXXXXXXXXXXXXXXXXIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 1477 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNW GPSNVPGQISGNQNSIVSRGI I+ASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV Sbjct: 1 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNW-------------GPSNVPGQISGNQNSIVSRGI----------------IKASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 426
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Planmine SMEST
Match: SMESG000004045.1 (SMESG000004045.1) HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0 Identity = 423/455 (92.97%), Postives = 423/455 (92.97%), Query Frame = 2 Query: 113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGIISNVTSNGASYNNRLPIEASGDSPEICGXXXXXXXXXXXXXXXXXIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 1477 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAG LFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWG PSN GIISNVTSNGASYNNRLPIEASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV Sbjct: 1 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAG----LFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWG-------------PSN---------------GIISNVTSNGASYNNRLPIEASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 423
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Planmine SMEST
Match: SMESG000004039.1 (SMESG000004039.1) HSP 1 Score: 755.362 bits (1949), Expect = 0.000e+0 Identity = 421/455 (92.53%), Postives = 422/455 (92.75%), Query Frame = 2 Query: 113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGIISNVTSNGASYNNRLPIEASGDSPEICGXXXXXXXXXXXXXXXXXIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 1477 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMA GLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNW GPSNVPGQISGNQNSIVSRGI I+ASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV Sbjct: 1 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMA----GLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNW-------------GPSNVPGQISGNQNSIVSRGI----------------IKASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 422
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Planmine SMEST
Match: SMESG000004045.1 (SMESG000004045.1) HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0 Identity = 353/388 (90.98%), Postives = 355/388 (91.49%), Query Frame = 2 Query: 314 NGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGIISNVTSNGASYNNRLPIEASGDSPEICGXXXXXXXXXXXXXXXXXIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 1477 +G T + DYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWG PSN GIISNVTSNGASYNNRLPIEASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV Sbjct: 161 SGFTPEEWVDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWG-------------PSN---------------GIISNVTSNGASYNNRLPIEASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 520 The following BLAST results are available for this feature:
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 1
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Cross References
External references for this transcript
Sequences
The following sequences are available for this feature:
transcript sequence >SMED30034336 ID=SMED30034336|Name=TPA_inf: C3H-zinc finger-containing protein 1|organism=Schmidtea mediterranea sexual|type=transcript|length=1721bpback to top protein sequence of SMED30034336-orf-1 >SMED30034336-orf-1 ID=SMED30034336-orf-1|Name=SMED30034336-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=456bp MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSback to top Annotated Terms
The following terms have been associated with this transcript:
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