TPA_inf: C3H-zinc finger-containing protein 1

Overview
NameTPA_inf: C3H-zinc finger-containing protein 1 (DAA34915.1)
Smed IDSMED30034336
Length (bp)1721
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of TPA_inf: C3H-zinc finger-containing protein 1 (SMED30034336) t-SNE clustered cells

Violin plots show distribution of expression levels for TPA_inf: C3H-zinc finger-containing protein 1 (SMED30034336) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30034336

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parapharyngeal regionSMED30034336h1SMcG0008432 dd_Smed_v6_37921_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
testisSMED30034336h1SMcG0008432 Contig4332_SE3GPL10652PMID:20844018
Wang et al., 2010
whole organism adult hermaphrodite colorimetric in situ hybridization evidence
early male germ cellSMED30034336h1SMcG0008432 Contig4332_SE3GPL10652PMID:20844018
Wang et al., 2010
whole organism asexual adult cDNA to DNA expression microarray evidence
testis primordiumSMED30034336h1SMcG0008432 Contig4332_SE3GPL10652PMID:20844018
Wang et al., 2010
whole organism juvenile stagecDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Homology
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Xenopus
Match: rfc2 (replication factor C subunit 2 [Source:Xenbase;Acc:XB-GENE-999114])

HSP 1 Score: 50.0618 bits (118), Expect = 5.048e-6
Identity = 20/50 (40.00%), Postives = 29/50 (58.00%), Query Frame = 2
Query:  128 RKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSH 277
            R+ CR + + GGC YG +C F H  + +  C+ F +   C +G  CHFSH
Sbjct:  145 RERCRLWRSPGGCPYGARCHFQHPKSSREVCRHFAALGDCPYGARCHFSH 194          
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Xenopus
Match: zfp36l2.2 (zinc finger protein 36, C3H type-like 2, gene 2 [Source:NCBI gene;Acc:733887])

HSP 1 Score: 49.2914 bits (116), Expect = 7.783e-6
Identity = 20/50 (40.00%), Postives = 28/50 (56.00%), Query Frame = 2
Query:  128 RKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSH 277
            R+ CR + + GGC YG +C F H    +  C+ F +   C +G  CHFSH
Sbjct:  145 REQCRLWRSPGGCPYGARCHFQHPKGFREACRHFAAHGDCPYGARCHFSH 194          
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. UniProt/SwissProt
Match: sp|O22243|C3H31_ARATH (DExH-box ATP-dependent RNA helicase DExH8 OS=Arabidopsis thaliana OX=3702 GN=At2g47680 PE=2 SV=2)

HSP 1 Score: 54.299 bits (129), Expect = 2.749e-6
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 2
Query:  125 ERKICRYFNTLGGCWYGEKCKFIHLL-NKKPPCKFFGSSSGCRFGDSCHFSH 277
            E  +C YF   G C  G +C F H L + +P CKFF SS GCR G+SC FSH
Sbjct:  729 EAPVCVYFLN-GYCNRGGQCTFTHTLQSTRPACKFFASSQGCRNGESCLFSH 779          
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. TrEMBL
Match: F9W2W1 (C3H-zinc finger-containing protein 1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 805.053 bits (2078), Expect = 0.000e+0
Identity = 438/455 (96.26%), Postives = 439/455 (96.48%), Query Frame = 2
Query:  113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGIISNVTSNGASYNNRLPIEASGDSPEICGXXXXXXXXXXXXXXXXXIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 1477
            MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGI                I+ASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV
Sbjct:    1 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGI----------------IKASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 439          
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. TrEMBL
Match: A0A0V0JC52 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=TR139554 PE=4 SV=1)

HSP 1 Score: 397.127 bits (1019), Expect = 6.642e-127
Identity = 216/364 (59.34%), Postives = 253/364 (69.51%), Query Frame = 2
Query:  113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFF--GSSSGCRFGDSCHFSHERTPFKSVENYENGITDDI-KEDYKENLNPSELTGTNNNNM------------------------------------EQNLNISAT-----NLEIMVNNTP---VSEVT---------IDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRK 1036
            MSD E+KICRYFNTLGGCWYG+ CKF+H+  K+PPCKFF   SS+GCRFG+SCHFSH+R P K VEN +N  TDD  KE  KEN++PS ++GTNNNNM                                    EQ L   +      N E +V+      +S++T          D     ++  ++ + CGSCKR+LD++ NESYCN+LKDHYLE FL+KEGDHVK VK KAAL+PGQMYWCK CILIFEKPWSLFQHMADKAKG KVQRWE+KIHLDW+D VAGLMAG+DLGLFS  KLR DLR LLADQHT+EEEME AAV AAAM+QWL P  I +PWRL QREMMRKIE L+RQM RK
Sbjct:    1 MSDPEKKICRYFNTLGGCWYGDTCKFLHIPEKRPPCKFFCDRSSAGCRFGESCHFSHDRVPVKPVEN-DNMKTDDTSKEVLKENMDPSNVSGTNNNNMTHPTSNCLKICDPPSQLTAEKPSADPETAEELPEFAEQALKTVSECPVEDNPEPIVDEEEKELISQLTDVPDFVPSNTDLQAYQSVPADMPILCGSCKRVLDRRGNESYCNLLKDHYLECFLEKEGDHVKCVKSKAALEPGQMYWCKACILIFEKPWSLFQHMADKAKGTKVQRWERKIHLDWIDNVAGLMAGHDLGLFSPAKLRTDLRTLLADQHTVEEEMEAAAVAAAAMVQWLAP--ISSPWRLHQREMMRKIENLHRQMLRK 361          
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. TrEMBL
Match: A0A0R3UG03 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS6102 PE=4 SV=1)

HSP 1 Score: 372.859 bits (956), Expect = 3.088e-118
Identity = 198/351 (56.41%), Postives = 246/351 (70.09%), Query Frame = 2
Query:  113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGS--SSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNL------------------------------------EIMVNNTPVSEVTID---FSKESN-----IANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQM 1027
            M+D E+KICRYFN LGGCWYG+ C F+H+ +K+PPCKFF    SSGCRFG++CHFSH+  P ++VE   NGI    ++  KE   P   +G NNNNM  +  ++ T+                                     E+  N++ + +  +D   F+ + N     +A + ++ CG+CK++L+++ +ESYCN+LKDHYLE FLDKEGDHVK VK KAALDPGQMYWCK+CILIFEKPWSLFQHMADKAKG KVQRWEKK+HLDW+D+VAGLMAG+DLGLFSL KLR DLRNLLADQHT+EEEME AAV AAAM+QWL P  I +PWRL QREMMRKIE LNR +
Sbjct:    1 MADPEKKICRYFNALGGCWYGDNCNFLHIPDKRPPCKFFWDKLSSGCRFGENCHFSHDGAPLRTVEQ-SNGIFSISEDALKEKPAPENASGRNNNNMAISSRLTITDPPKPSEKQREVDSGEEVTSGEEKNKGSATAPTEGFESELPTNDSDLMQRLVDLPEFTPDPNFQQDYLAFDSQIMCGTCKQILERRGSESYCNLLKDHYLECFLDKEGDHVKCVKLKAALDPGQMYWCKSCILIFEKPWSLFQHMADKAKGTKVQRWEKKVHLDWIDSVAGLMAGHDLGLFSLMKLRTDLRNLLADQHTMEEEMEAAAVAAAAMVQWLTP--ISSPWRLHQREMMRKIENLNRHI 348          
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. TrEMBL
Match: W6UJS0 (Uncharacterized protein OS=Echinococcus granulosus OX=6210 GN=EGR_06769 PE=4 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 6.513e-114
Identity = 200/355 (56.34%), Postives = 244/355 (68.73%), Query Frame = 2
Query:  113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFF--GSSSGCRFGDSCHFSHERTPFKSVEN--YENGITDDIKEDYKENLNPSELTGTNNNNM----------------------EQNLNISATNLEIMVNNTPVS--EVTID-----------------FSKESNIANE-----IEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQM 1027
            M D ++KICRYFN +GGCWYG+ C F+H+ +K+PPCKFF   SS+GCRFG++CHFSH+    K VE    +  + +++ +D KE+ N S   G NNNNM                      + +  + A + E + NNT  S  E   D                 F  +SN   E      ++ CG+CK++L+++ NESYCN+LKDHYLE FLDKEGDHVK VK KAAL+PGQMYWCK+CILIFEKPWSLFQHMADKAKG KVQRWEKK+HLDW+D+VAGLMAG+DLGLFSL KLR DLRNLLADQHT+EEEME AAV AAAM+QWL P  I +PWRL QREMMRKIE  +RQM
Sbjct:    1 MGDPDKKICRYFNAVGGCWYGDNCNFLHIPDKRPPCKFFWDKSSTGCRFGENCHFSHDCASLKVVEQPICKVPLPNEVLKDNKESGNTS---GRNNNNMAISSRLIITEPPKTADSSKSSGDTSAEVVANSEEKINNNTVTSAEEAVADLCPHDKDLMPKLMELSEFPSDSNFQQEQLTLDSQIMCGTCKQILERRGNESYCNLLKDHYLECFLDKEGDHVKCVKLKAALEPGQMYWCKSCILIFEKPWSLFQHMADKAKGAKVQRWEKKVHLDWIDSVAGLMAGHDLGLFSLMKLRTDLRNLLADQHTMEEEMEAAAVAAAAMVQWLAP--ISSPWRLHQREMMRKIENFHRQM 350          
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. TrEMBL
Match: A0A564Y9N2 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS4141 PE=4 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 1.393e-108
Identity = 187/384 (48.70%), Postives = 251/384 (65.36%), Query Frame = 2
Query:  113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFF--GSSSGCRFGDSCHFSHERTPFKSVENYENGITD--------DIKEDYKEN-------------------LNPSELTGTNNNNMEQNLNISATNLEIMVNN-----------TPVSEVTIDFS----KESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLT-GMGANNFVLGPSNVPGQISG 1129
            M+DTE+KICRYFNT+GGCWYG+ C F+H+ +K+PPCKFF   SS+GC +G++CHFSH     K VE   +  ++         + +D +E+                    +P +      + ++  + IS + +  + NN           + V++V   F+    ++  +  + ++ CG+CKR+L+++ NESYCN+LKDHYLE FLDK+GDHVK VK KAAL+ GQMYWCK+CILIFEKPWSLFQHMADKAKG KVQRWEKK+HLDW+D+VAGLMAG+DLGLFSL KLR DLRNLLADQ+T     E   + AAAM+QWL P T  NPWR+ QRE+MRKIE L+RQ+ R+ G       +    G++NF+  PS    +IS 
Sbjct:    1 MADTEKKICRYFNTIGGCWYGDTCNFLHIPDKRPPCKFFWEKSSNGCIYGENCHFSHASGSLKLVERSISKFSNTEKLFGFYQVPKDSQESKCNSDRNNNSMAISSRLIISDPPQTRDCTKDPIDLQVEISDSFITPVDNNREANGENNDVLSMVADVKECFADSKFQQEQLTLDSQIMCGTCKRVLERRGNESYCNLLKDHYLECFLDKDGDHVKCVKMKAALEAGQMYWCKSCILIFEKPWSLFQHMADKAKGVKVQRWEKKVHLDWIDSVAGLMAGHDLGLFSLMKLRIDLRNLLADQYT---MEEEMEMAAAAMVQWLVPITT-NPWRIHQREVMRKIENLHRQLVRRAGGAAELTRVALAAGSSNFI-PPSLYGSRISS 379          
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Planmine SMEST
Match: SMESG000004045.1 (SMESG000004045.1)

HSP 1 Score: 774.237 bits (1998), Expect = 0.000e+0
Identity = 427/455 (93.85%), Postives = 427/455 (93.85%), Query Frame = 2
Query:  113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGIISNVTSNGASYNNRLPIEASGDSPEICGXXXXXXXXXXXXXXXXXIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 1477
            MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWG             PSN               GIISNVTSNGASYNNRLPIEASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV
Sbjct:    1 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWG-------------PSN---------------GIISNVTSNGASYNNRLPIEASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 427          
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Planmine SMEST
Match: SMESG000004039.1 (SMESG000004039.1)

HSP 1 Score: 770.385 bits (1988), Expect = 0.000e+0
Identity = 425/455 (93.41%), Postives = 426/455 (93.63%), Query Frame = 2
Query:  113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGIISNVTSNGASYNNRLPIEASGDSPEICGXXXXXXXXXXXXXXXXXIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 1477
            MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNW             GPSNVPGQISGNQNSIVSRGI                I+ASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV
Sbjct:    1 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNW-------------GPSNVPGQISGNQNSIVSRGI----------------IKASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 426          
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Planmine SMEST
Match: SMESG000004045.1 (SMESG000004045.1)

HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0
Identity = 423/455 (92.97%), Postives = 423/455 (92.97%), Query Frame = 2
Query:  113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGIISNVTSNGASYNNRLPIEASGDSPEICGXXXXXXXXXXXXXXXXXIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 1477
            MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAG    LFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWG             PSN               GIISNVTSNGASYNNRLPIEASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV
Sbjct:    1 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAG----LFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWG-------------PSN---------------GIISNVTSNGASYNNRLPIEASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 423          
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Planmine SMEST
Match: SMESG000004039.1 (SMESG000004039.1)

HSP 1 Score: 755.362 bits (1949), Expect = 0.000e+0
Identity = 421/455 (92.53%), Postives = 422/455 (92.75%), Query Frame = 2
Query:  113 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGIISNVTSNGASYNNRLPIEASGDSPEICGXXXXXXXXXXXXXXXXXIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 1477
            MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMA    GLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNW             GPSNVPGQISGNQNSIVSRGI                I+ASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV
Sbjct:    1 MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDSCHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMA----GLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNW-------------GPSNVPGQISGNQNSIVSRGI----------------IKASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 422          
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Planmine SMEST
Match: SMESG000004045.1 (SMESG000004045.1)

HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0
Identity = 353/388 (90.98%), Postives = 355/388 (91.49%), Query Frame = 2
Query:  314 NGITDDIKEDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGIISNVTSNGASYNNRLPIEASGDSPEICGXXXXXXXXXXXXXXXXXIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 1477
            +G T +   DYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWG             PSN               GIISNVTSNGASYNNRLPIEASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV
Sbjct:  161 SGFTPEEWVDYKENLNPSELTGTNNNNMEQNLNISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDLRNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQLNRQMYRKGGRGVNWG-------------PSN---------------GIISNVTSNGASYNNRLPIEASGDSPEICGLQLLSNESESNLELQENIDLNVKGDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDESFSSV 520          
The following BLAST results are available for this feature:
BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rfc25.048e-640.00replication factor C subunit 2 [Source:Xenbase;Acc... [more]
zfp36l2.27.783e-640.00zinc finger protein 36, C3H type-like 2, gene 2 [S... [more]
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BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 1
Match NameE-valueIdentityDescription
sp|O22243|C3H31_ARATH2.749e-651.92DExH-box ATP-dependent RNA helicase DExH8 OS=Arabi... [more]
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BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
F9W2W10.000e+096.26C3H-zinc finger-containing protein 1 OS=Schmidtea ... [more]
A0A0V0JC526.642e-12759.34Uncharacterized protein OS=Schistocephalus solidus... [more]
A0A0R3UG033.088e-11856.41Uncharacterized protein OS=Mesocestoides corti OX=... [more]
W6UJS06.513e-11456.34Uncharacterized protein OS=Echinococcus granulosus... [more]
A0A564Y9N21.393e-10848.70Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
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BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of TPA_inf: C3H-zinc finger-containing protein 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000004045.10.000e+093.85SMESG000004045.1[more]
SMESG000004039.10.000e+093.41SMESG000004039.1[more]
SMESG000004045.10.000e+092.97SMESG000004045.1[more]
SMESG000004039.10.000e+092.53SMESG000004039.1[more]
SMESG000004045.10.000e+090.98SMESG000004045.1[more]
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Cross References
External references for this transcript
DatabaseAccession
SmedGD GBrowseSMED30034336
GenBankDAA34915.1
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30034336 ID=SMED30034336|Name=TPA_inf: C3H-zinc finger-containing protein 1|organism=Schmidtea mediterranea sexual|type=transcript|length=1721bp
AGAAAAATCGATATTTCTATGACTTTTTAAATTTGAATTTGATACAATTG
TATTAATTTATATTTCGCCTTATACCAGTCGTGTTTTATTTGGTTTTATT
CTTGGTTATTAAATGAGTGACACAGAAAGAAAGATTTGCCGGTATTTTAA
TACTCTAGGAGGGTGTTGGTATGGCGAAAAGTGCAAATTTATTCATCTTC
TCAATAAAAAACCTCCATGTAAATTTTTCGGATCTTCATCCGGTTGCAGA
TTTGGAGATTCGTGCCATTTTAGTCATGAAAGAACTCCATTTAAATCTGT
TGAAAATTATGAAAACGGAATAACAGATGACATTAAAGAAGATTATAAAG
AAAATTTGAATCCAAGCGAACTAACGGGAACAAACAATAACAACATGGAG
CAGAATTTGAATATTTCAGCGACGAATTTGGAAATTATGGTGAACAATAC
TCCGGTTTCGGAAGTGACAATTGACTTTTCTAAGGAATCCAACATTGCGA
ATGAAATCGAAGTACATTGCGGTTCTTGCAAGCGTCTCTTAGATAAGCAA
AACAATGAGAGCTACTGTAATATATTGAAAGATCATTATTTGGAAAGCTT
TTTGGATAAAGAAGGTGATCATGTGAAATATGTGAAATTTAAAGCGGCAC
TTGATCCCGGACAGATGTATTGGTGTAAAACGTGCATATTAATTTTTGAA
AAACCTTGGTCATTATTCCAGCACATGGCCGACAAGGCAAAAGGAAACAA
AGTTCAAAGATGGGAGAAAAAAATCCACTTAGATTGGCTTGATACCGTTG
CTGGTCTTATGGCAGGATACGATTTAGGATTGTTTAGTCTTGGTAAATTG
AGAAATGATTTGCGAAATTTATTGGCCGACCAACATACCATAGAAGAAGA
AATGGAAGTAGCTGCCGTAACGGCTGCTGCTATGATGCAATGGTTGAATC
CTGCAACAATTGGAAACCCATGGCGACTGCAACAACGTGAAATGATGCGT
AAAATTGAACAATTAAACAGACAAATGTATAGAAAAGGAGGAAGAGGAGT
GAATTGGGGTTTACTAACTGGTATGGGTGCTAATAACTTTGTTTTAGGGC
CTTCTAATGTACCTGGACAAATTTCTGGCAATCAAAATTCAATTGTCTCC
AGGGGAATAATCAGTAATGTTACTAGTAATGGAGCGAGTTACAATAACCG
TTTACCTATAGAGGCTAGTGGGGATTCACCTGAAATATGCGGTTTGCAAT
TGTTGTCGAATGAATCTGAAAGCAACTTAGAGCTTCAAGAAAATATTGAC
TTGAATGTAAAAGGGGATTATAAAATTGAAATGGAAGACTCGAAAAACAG
CAGATCGACAAACTCTGGAATCGGTGAGAAACAGAGCTCCCCAGATATAG
TGAAAAATGACTGGATGAATCAAGAACATATCTCAGACCTTAAATCTCCT
CAGTGGGATGAATCTTTTTCTTCTGTTTAAATTTTAATTGACTCTTTCTG
ACTTTATCCAATGAAAAATGTAGTAAGAAATTGTTTTGTGGACTAAAGAC
CGAATTAAGGAATTGTGTTGAATAATTTTTGAGCGCTGGCGCTTTAACTT
TTATTCAAATTTTCCTTTTCTATTAGGTCATTGTGGTAAATATTTCATTC
TTATTATTCTTATTATTATTATAAATGAAAGTTATTTCTGTTACCATCAA
ATAAAAATAGTTGTGAGTACG
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protein sequence of SMED30034336-orf-1

>SMED30034336-orf-1 ID=SMED30034336-orf-1|Name=SMED30034336-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=456bp
MSDTERKICRYFNTLGGCWYGEKCKFIHLLNKKPPCKFFGSSSGCRFGDS
CHFSHERTPFKSVENYENGITDDIKEDYKENLNPSELTGTNNNNMEQNLN
ISATNLEIMVNNTPVSEVTIDFSKESNIANEIEVHCGSCKRLLDKQNNES
YCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWS
LFQHMADKAKGNKVQRWEKKIHLDWLDTVAGLMAGYDLGLFSLGKLRNDL
RNLLADQHTIEEEMEVAAVTAAAMMQWLNPATIGNPWRLQQREMMRKIEQ
LNRQMYRKGGRGVNWGLLTGMGANNFVLGPSNVPGQISGNQNSIVSRGII
SNVTSNGASYNNRLPIEASGDSPEICGLQLLSNESESNLELQENIDLNVK
GDYKIEMEDSKNSRSTNSGIGEKQSSPDIVKNDWMNQEHISDLKSPQWDE
SFSSV*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000208testis
PLANA:0000420parapharyngeal region
PLANA:0002030early male germ cell
PLANA:0003304testis primordium
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: molecular function
TermDefinition
GO:0046872metal ion binding