RNA-binding protein 4

Overview
NameRNA-binding protein 4
Smed IDSMED30034299
Length (bp)1263
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RNA-binding protein 4 (SMED30034299) t-SNE clustered cells

Violin plots show distribution of expression levels for RNA-binding protein 4 (SMED30034299) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA-binding protein 4 (SMED30034299) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RNA-binding protein 4 (SMED30034299) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30034299

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30034299h1SMcG0006552 SmedASXL_006253SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30034299h1SMcG0006552 SmedASXL_006253SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30034299h1SMcG0006552 dd_Smed_v4_1285_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30034299h1SMcG0006552 dd_Smed_v4_1285_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30034299h1SMcG0006552 dd_Smed_v4_1285_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30034299h1SMcG0006552 dd_Smed_v4_1285_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30034299h1SMcG0006552 dd_Smed_v4_1285_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Human
Match: RBM14 (RNA binding motif protein 14 [Source:HGNC Symbol;Acc:HGNC:14219])

HSP 1 Score: 68.9366 bits (167), Expect = 2.430e-13
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHGG 274
            K+FVGN+    + +EL  LF + G ++E  +VK++ F+HM  E +A  AI  L+G E  G  INVE+S  G
Sbjct:   80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150

HSP 2 Score: 54.299 bits (129), Expect = 3.209e-8
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 2 
Query:   62 KLFVGNIPNG-TSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEF-AGNVINVEIS 265
            K+FVGN+    T+ EEL+ LF+ YG ++   ++K F F+HM     A  AIE L G E   G  + VE+S
Sbjct:    2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMS 71
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Human
Match: RBM14 (RNA binding motif protein 14 [Source:HGNC Symbol;Acc:HGNC:14219])

HSP 1 Score: 71.633 bits (174), Expect = 9.544e-13
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHGG 274
            K+FVGN+    + +EL  LF + G ++E  +VK++ F+HM  E +A  AI  L+G E  G  INVE+S  G
Sbjct:   80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150

HSP 2 Score: 57.7658 bits (138), Expect = 2.148e-8
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 2 
Query:   62 KLFVGNIPNG-TSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEF-AGNVINVEIS 265
            K+FVGN+    T+ EEL+ LF+ YG ++   ++K F F+HM     A  AIE L G E   G  + VE+S
Sbjct:    2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMS 71
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Human
Match: RBM4B (RNA binding motif protein 4B [Source:HGNC Symbol;Acc:HGNC:28842])

HSP 1 Score: 66.6254 bits (161), Expect = 1.731e-11
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 2 
Query:   53 SGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            + TKL VGNI    + +EL   F +YG ++E  IVK++ F+HM   E+A  AI  LD TEF G  ++V++S
Sbjct:   76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146

HSP 2 Score: 65.0846 bits (157), Expect = 6.088e-11
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            KLF+GN+P   +++E+  LF +YG++LE  I+KN+GF+H+  +  A  AI  L   +  G  INVE S
Sbjct:    3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 70
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Human
Match: RBM4B (RNA binding motif protein 4B [Source:HGNC Symbol;Acc:HGNC:28842])

HSP 1 Score: 66.6254 bits (161), Expect = 1.731e-11
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 2 
Query:   53 SGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            + TKL VGNI    + +EL   F +YG ++E  IVK++ F+HM   E+A  AI  LD TEF G  ++V++S
Sbjct:   76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146

HSP 2 Score: 65.0846 bits (157), Expect = 6.088e-11
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            KLF+GN+P   +++E+  LF +YG++LE  I+KN+GF+H+  +  A  AI  L   +  G  INVE S
Sbjct:    3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 70
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Human
Match: RBM4 (RNA binding motif protein 4 [Source:HGNC Symbol;Acc:HGNC:9901])

HSP 1 Score: 65.4698 bits (158), Expect = 1.842e-11
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 2 
Query:   53 SGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            + TKL VGNI    + +EL   F +YG ++E  IVK++ F+HM   E+A  AI  LD TEF G  ++V++S
Sbjct:   76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146

HSP 2 Score: 63.929 bits (154), Expect = 4.800e-11
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            KLF+GN+P   +++E+  LF +YG++LE  I+KN+GF+H+  +  A  AI  L   +  G  INVE S
Sbjct:    3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 70
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Celegans
Match: rnp-1 (RNA-binding protein rnp-1 [Source:UniProtKB/Swiss-Prot;Acc:Q10667])

HSP 1 Score: 56.6102 bits (135), Expect = 9.721e-9
Identity = 24/69 (34.78%), Postives = 42/69 (60.87%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            +KLFVGN+P+     +L ++F  + ++ E  IVKN+ F+H+  E++ +  I  L G    G V+N++ S
Sbjct:    3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHI-EEDDVDPIITRLTGYTIDGKVVNIKKS 70
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Celegans
Match: rbm-3.1 (RNA Binding Motif protein homolog [Source:UniProtKB/TrEMBL;Acc:O45712])

HSP 1 Score: 50.447 bits (119), Expect = 4.888e-8
Identity = 30/82 (36.59%), Postives = 44/82 (53.66%), Query Frame = 2 
Query:   50 MSGT-KLFVGNIPNGTSKEELSRLFSKYGEILEVTIV--------KNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISH 268
            MSG   ++VGN P  T++EEL   FS  G+I  V IV        + F FI  + E  A  A+E ++G EF G  + V +++
Sbjct:    1 MSGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLAN 82
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Celegans
Match: rbm-3.2 (RNA Binding Motif protein homolog [Source:UniProtKB/TrEMBL;Acc:O45713])

HSP 1 Score: 48.521 bits (114), Expect = 2.813e-7
Identity = 24/81 (29.63%), Postives = 42/81 (51.85%), Query Frame = 2 
Query:   50 MSGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIV--------KNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISH 268
            MSG  ++VGN P  T++++L   FS+ G +  V IV        + F F+  + E  A  A++  +G +F G  + V ++ 
Sbjct:    1 MSGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQ 81
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Celegans
Match: tiar-3 (TIA-1/TIAL RNA binding protein homolog [Source:UniProtKB/TrEMBL;Acc:Q93194])

HSP 1 Score: 52.373 bits (124), Expect = 3.759e-7
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKN--FGFIHMSSEEEANHAIELLDGTEFAGNVI 250
            T ++VGNI   T+  +L  LFS YG+I EV I K   + F+    +E A  AI  ++G E AGN +
Sbjct:  327 TSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMNGKEMAGNQV 392
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Celegans
Match: rsp-2 (Probable splicing factor, arginine/serine-rich 2 [Source:UniProtKB/Swiss-Prot;Acc:Q23120])

HSP 1 Score: 50.8322 bits (120), Expect = 6.417e-7
Identity = 24/94 (25.53%), Postives = 44/94 (46.81%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHGGXXXXXXXXXXXVLPRKSYGRNEE 343
            ++++G +PN  S  ++   F  YG++ +V +   FGF+    + +A+ A+  L+G E  G  + +E                  PR+  G NEE
Sbjct:    3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCGERVILE-----------------FPRRKVGYNEE 79
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Fly
Match: lark (gene:FBgn0011640 transcript:FBtr0076843)

HSP 1 Score: 65.855 bits (159), Expect = 1.838e-11
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            KLF+GN+   T   EL  LF KYG ++E  +VKN+GF+HM +E++   AI+ L+G       I VE +
Sbjct:    8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKVEAA 75

HSP 2 Score: 63.929 bits (154), Expect = 6.180e-11
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            TK+FVGN+ + T   E+  LF KYG ++E  IV+N+GF+H+    +   AI+ L+G    G  + V++S
Sbjct:   86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVS 154
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Fly
Match: lark (gene:FBgn0011640 transcript:FBtr0076844)

HSP 1 Score: 65.855 bits (159), Expect = 1.838e-11
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            KLF+GN+   T   EL  LF KYG ++E  +VKN+GF+HM +E++   AI+ L+G       I VE +
Sbjct:    8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKVEAA 75

HSP 2 Score: 63.929 bits (154), Expect = 6.180e-11
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            TK+FVGN+ + T   E+  LF KYG ++E  IV+N+GF+H+    +   AI+ L+G    G  + V++S
Sbjct:   86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVS 154
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Fly
Match: lark (gene:FBgn0011640 transcript:FBtr0076842)

HSP 1 Score: 65.855 bits (159), Expect = 1.838e-11
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            KLF+GN+   T   EL  LF KYG ++E  +VKN+GF+HM +E++   AI+ L+G       I VE +
Sbjct:    8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKVEAA 75

HSP 2 Score: 63.929 bits (154), Expect = 6.180e-11
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            TK+FVGN+ + T   E+  LF KYG ++E  IV+N+GF+H+    +   AI+ L+G    G  + V++S
Sbjct:   86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVS 154
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Fly
Match: lark (gene:FBgn0011640 transcript:FBtr0076841)

HSP 1 Score: 65.855 bits (159), Expect = 1.838e-11
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            KLF+GN+   T   EL  LF KYG ++E  +VKN+GF+HM +E++   AI+ L+G       I VE +
Sbjct:    8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKVEAA 75

HSP 2 Score: 63.929 bits (154), Expect = 6.180e-11
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            TK+FVGN+ + T   E+  LF KYG ++E  IV+N+GF+H+    +   AI+ L+G    G  + V++S
Sbjct:   86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVS 154
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Fly
Match: lark (gene:FBgn0011640 transcript:FBtr0076845)

HSP 1 Score: 65.855 bits (159), Expect = 1.838e-11
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            KLF+GN+   T   EL  LF KYG ++E  +VKN+GF+HM +E++   AI+ L+G       I VE +
Sbjct:    8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKVEAA 75

HSP 2 Score: 63.929 bits (154), Expect = 6.180e-11
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            TK+FVGN+ + T   E+  LF KYG ++E  IV+N+GF+H+    +   AI+ L+G    G  + V++S
Sbjct:   86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVS 154
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Zebrafish
Match: rbm4.1 (RNA binding motif protein 4.1 [Source:NCBI gene;Acc:573001])

HSP 1 Score: 73.1738 bits (178), Expect = 6.994e-15
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
             K+FVGN+   T+ EE+  LFS+YG+I E  IVKNFGF+HM S+ EA+ AI+ L      G  +NVE+S G
Sbjct:    2 VKIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNGMAMNVEMSKG 72

HSP 2 Score: 59.3066 bits (142), Expect = 5.295e-10
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 2 
Query:   53 SGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAG 241
            + TKL VGNI +  + +EL   F +YG ++E  IVK++ F+HM   E+A  AI  LD T F G
Sbjct:   76 TSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQG 138
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Zebrafish
Match: rbm4.1 (RNA binding motif protein 4.1 [Source:NCBI gene;Acc:573001])

HSP 1 Score: 74.3294 bits (181), Expect = 5.244e-14
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
             K+FVGN+   T+ EE+  LFS+YG+I E  IVKNFGF+HM S+ EA+ AI+ L      G  +NVE+S G
Sbjct:    2 VKIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNGMAMNVEMSKG 72

HSP 2 Score: 65.4698 bits (158), Expect = 3.952e-11
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            TKL VGNI +  + +EL   F +YG ++E  IVK++ F+HM   E+A  AI  LD T F G +++V++S
Sbjct:   78 TKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLS 146
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Zebrafish
Match: rbm4.3 (RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1938])

HSP 1 Score: 70.4774 bits (171), Expect = 6.428e-13
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
             KL V N+  GT  +EL  LF  YG + E  I+KNF F+HM++ +EA  AI+ LD TEF G  I+V+IS
Sbjct:   78 VKLHVANVEKGTD-DELRALFEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGLDNTEFQGKRIHVQIS 145

HSP 2 Score: 68.5514 bits (166), Expect = 2.748e-12
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
             K+F+GN+P     +EL  LFS+YG + E  I+KNF F+HM   + A  AI+ L   +  G  INVE S G
Sbjct:    2 VKIFIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKLHGTPINVEASRG 72
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Zebrafish
Match: rbm4.3 (RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1938])

HSP 1 Score: 70.4774 bits (171), Expect = 6.428e-13
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
             KL V N+  GT  +EL  LF  YG + E  I+KNF F+HM++ +EA  AI+ LD TEF G  I+V+IS
Sbjct:   78 VKLHVANVEKGTD-DELRALFEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGLDNTEFQGKRIHVQIS 145

HSP 2 Score: 68.5514 bits (166), Expect = 2.748e-12
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
             K+F+GN+P     +EL  LFS+YG + E  I+KNF F+HM   + A  AI+ L   +  G  INVE S G
Sbjct:    2 VKIFIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKLHGTPINVEASRG 72
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Zebrafish
Match: rbm14b (RNA binding motif protein 14b [Source:ZFIN;Acc:ZDB-GENE-040426-2455])

HSP 1 Score: 70.8626 bits (172), Expect = 8.688e-13
Identity = 31/69 (44.93%), Postives = 47/69 (68.12%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            TK+FVGN+ +  + E+L  LF  +G++LE   VK + F+HM ++E+A  AIE L GT F G  ++VE+S
Sbjct:   83 TKVFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELS 151

HSP 2 Score: 67.781 bits (164), Expect = 9.994e-12
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
            KLFVGN+   T++EELS +F  YG+++  ++++ F F+H+  E  A  AI  L+G EF G  + VE S G
Sbjct:    8 KLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREFKGRNLVVEESRG 77
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Xenopus
Match: rbm14 (RNA binding motif protein 14 [Source:NCBI gene;Acc:394647])

HSP 1 Score: 75.0998 bits (183), Expect = 4.372e-14
Identity = 30/69 (43.48%), Postives = 47/69 (68.12%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISH 268
            K+FVGN+ +     E+ ++F ++G ++E  IVK++ F+HM+ E E+  AIE L+G E  G  INVE+SH
Sbjct:   85 KIFVGNVSSSCEVSEIRKMFEEHGRVVECDIVKDYAFVHMTRESESRAAIEALNGKEVKGKRINVEMSH 153

HSP 2 Score: 72.0182 bits (175), Expect = 4.630e-13
Identity = 28/68 (41.18%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            K+FVGN+ + T++EE++ LF +YG ++   ++K + F+HM   EEA  A+E L+G E  G  + VE+S
Sbjct:    9 KIFVGNVDDSTTQEEITELFERYGTVVNCAVMKQYAFVHMRGSEEATKAVEDLNGRELNGKKMLVELS 76
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Xenopus
Match: rbm4b (NF-kappa-B inhibitor zeta-like [Source:Xenbase;Acc:XB-GENE-5965587])

HSP 1 Score: 67.0106 bits (162), Expect = 1.315e-11
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:   53 SGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            + TKL V N+    + EEL   F +YG +LE  IVK++ F+HM    EA  AI+ LD TEF G  ++V++S
Sbjct:   76 ASTKLHVSNLSTSCTSEELRAKFEEYGAVLECDIVKDYAFVHMERSAEALDAIKNLDNTEFKGKRMHVQLS 146

HSP 2 Score: 64.6994 bits (156), Expect = 5.897e-11
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
             KLFVGN+P   ++ EL  LF ++G + E  I+KN+GF+HM   + A+ A+  L+  +     INVE S G
Sbjct:    2 VKLFVGNLPPEATQSELKSLFEQFGRVTECDIIKNYGFVHMEDRKAADEAVHNLNHYKLHSVPINVEHSRG 72
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Xenopus
Match: snx15 (sorting nexin 15 [Source:NCBI gene;Acc:734054])

HSP 1 Score: 64.6994 bits (156), Expect = 1.320e-10
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 2 
Query:   44 VIMSGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVE 259
            + ++  K+FVG +    S +EL +LF +YG++ E  I+KN+ F+HM  E++A+ AI  L   EF G+ + VE
Sbjct:  313 LAIAMVKIFVGGVSPSASPDELKKLFERYGQVNECDILKNYAFVHMEREQDAHRAISELHKQEFYGSHLTVE 384

HSP 2 Score: 62.003 bits (149), Expect = 1.131e-9
Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 2 
Query:   47 IMSGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            I + TK++VGN+ +  +  ++  LF K+G+++E  IVKN+ F+HM+ E EA  AI  L+ T      I V +S
Sbjct:  390 IRNATKIYVGNVSSRATTSQVKELFEKFGKVVECDIVKNYAFVHMAKEREAMDAILHLNDTPLEDQKIFVTLS 462
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Xenopus
Match: srsf5 (serine/arginine-rich splicing factor 5 [Source:NCBI gene;Acc:448003])

HSP 1 Score: 55.0694 bits (131), Expect = 1.051e-8
Identity = 20/70 (28.57%), Postives = 38/70 (54.29%), Query Frame = 2 
Query:   50 MSGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVE 259
            MSG ++F+G +     ++++ R F  YG I ++ + + FGF+      +A+ A+  LDG E     + +E
Sbjct:    1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDADDAVYELDGKELCNERVTIE 70
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Xenopus
Match: sms (spermine synthase [Source:Xenbase;Acc:XB-GENE-953534])

HSP 1 Score: 56.6102 bits (135), Expect = 1.177e-8
Identity = 28/74 (37.84%), Postives = 39/74 (52.70%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKN---FGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
             K++VGN+  G  K EL R FS YG +  V I +N   F F+      +A  A+  LDG    G+ + VE+S G
Sbjct:   11 AKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDTRDAEDAVRGLDGKVICGSRVRVELSTG 84
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Mouse
Match: Rbm14 (RNA binding motif protein 14 [Source:MGI Symbol;Acc:MGI:1929092])

HSP 1 Score: 71.633 bits (174), Expect = 6.213e-13
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHGG 274
            K+FVGN+    + +EL  LF + G ++E  +VK++ F+HM  E +A  AI  L+G E  G  INVE+S  G
Sbjct:   80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150

HSP 2 Score: 58.5362 bits (140), Expect = 1.003e-8
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 2 
Query:   62 KLFVGNIPNG-TSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEF-AGNVINVEIS 265
            K+FVGN+    T+ EEL+ LF+ YG ++   ++K F F+HM     A  AIE L G E   G  + VE+S
Sbjct:    2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMS 71
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Mouse
Match: Rbm14 (RNA binding motif protein 14 [Source:MGI Symbol;Acc:MGI:1929092])

HSP 1 Score: 71.2478 bits (173), Expect = 9.081e-13
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHGG 274
            K+FVGN+    + +EL  LF + G ++E  +VK++ F+HM  E +A  AI  L+G E  G  INVE+S  G
Sbjct:   80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150

HSP 2 Score: 58.5362 bits (140), Expect = 9.874e-9
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 2 
Query:   62 KLFVGNIPNG-TSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEF-AGNVINVEIS 265
            K+FVGN+    T+ EEL+ LF+ YG ++   ++K F F+HM     A  AIE L G E   G  + VE+S
Sbjct:    2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMS 71
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Mouse
Match: Rbm4 (RNA binding motif protein 4 [Source:MGI Symbol;Acc:MGI:1100865])

HSP 1 Score: 65.0846 bits (157), Expect = 5.482e-12
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 2 
Query:   53 SGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            + TKL VGNI    + +EL   F +YG ++E  IVK++ F+HM   E+A  AI  LD TEF G  ++V++S
Sbjct:   76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146

HSP 2 Score: 63.5438 bits (153), Expect = 1.967e-11
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
             KLF+GN+P   +++E+  LF +YG++LE  I+KN+GF+H+  +  A  AI  L   +  G  INVE S
Sbjct:    2 VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 70
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Mouse
Match: Rbm4b (RNA binding motif protein 4B [Source:MGI Symbol;Acc:MGI:1913954])

HSP 1 Score: 66.2402 bits (160), Expect = 9.593e-12
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 2 
Query:   53 SGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            + TKL VGNI    + +EL   F +YG ++E  IVK++ F+HM   E+A  AI  LD TEF G  ++V++S
Sbjct:   76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146

HSP 2 Score: 64.6994 bits (156), Expect = 3.468e-11
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            KLF+GN+P   +++E+  LF +YG++LE  I+KN+GF+H+  +  A  AI  L   +  G  INVE S
Sbjct:    3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 70
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Mouse
Match: Rbm4 (RNA binding motif protein 4 [Source:MGI Symbol;Acc:MGI:1100865])

HSP 1 Score: 67.0106 bits (162), Expect = 9.753e-12
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 2 
Query:   53 SGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            + TKL VGNI    + +EL   F +YG ++E  IVK++ F+HM   E+A  AI  LD TEF G  ++V++S
Sbjct:   76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146

HSP 2 Score: 65.4698 bits (158), Expect = 3.588e-11
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            KLF+GN+P   +++E+  LF +YG++LE  I+KN+GF+H+  +  A  AI  L   +  G  INVE S
Sbjct:    3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 70
[Close]
BLAST of RNA-binding protein 4 vs. UniProt/SwissProt
Match: sp|Q6IQ97|RBM41_DANRE (RNA-binding protein 4.1 OS=Danio rerio OX=7955 GN=rbm4.1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.958e-13
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
             K+FVGN+   T+ EE+  LFS+YG+I E  IVKNFGF+HM S+ EA+ AI+ L      G  +NVE+S G
Sbjct:    2 VKIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNGMAMNVEMSKG 72

HSP 2 Score: 65.4698 bits (158), Expect = 2.983e-10
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            TKL VGNI +  + +EL   F +YG ++E  IVK++ F+HM   E+A  AI  LD T F G +++V++S
Sbjct:   78 TKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLS 146
[Close]
BLAST of RNA-binding protein 4 vs. UniProt/SwissProt
Match: sp|Q8C2Q3|RBM14_MOUSE (RNA-binding protein 14 OS=Mus musculus OX=10090 GN=Rbm14 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.346e-12
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHGG 274
            K+FVGN+    + +EL  LF + G ++E  +VK++ F+HM  E +A  AI  L+G E  G  INVE+S  G
Sbjct:   80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150

HSP 2 Score: 58.5362 bits (140), Expect = 7.016e-8
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 2 
Query:   62 KLFVGNIPNG-TSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEF-AGNVINVEIS 265
            K+FVGN+    T+ EEL+ LF+ YG ++   ++K F F+HM     A  AIE L G E   G  + VE+S
Sbjct:    2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMS 71
[Close]
BLAST of RNA-binding protein 4 vs. UniProt/SwissProt
Match: sp|Q96PK6|RBM14_HUMAN (RNA-binding protein 14 OS=Homo sapiens OX=9606 GN=RBM14 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.583e-12
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHGG 274
            K+FVGN+    + +EL  LF + G ++E  +VK++ F+HM  E +A  AI  L+G E  G  INVE+S  G
Sbjct:   80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150

HSP 2 Score: 57.7658 bits (138), Expect = 1.032e-7
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 2 
Query:   62 KLFVGNIPNG-TSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEF-AGNVINVEIS 265
            K+FVGN+    T+ EEL+ LF+ YG ++   ++K F F+HM     A  AIE L G E   G  + VE+S
Sbjct:    2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMS 71
[Close]
BLAST of RNA-binding protein 4 vs. UniProt/SwissProt
Match: sp|Q5RC41|RBM14_PONAB (RNA-binding protein 14 OS=Pongo abelii OX=9601 GN=RBM14 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.707e-12
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHGG 274
            K+FVGN+    + +EL  LF + G ++E  +VK++ F+HM  E +A  AI  L+G E  G  INVE+S  G
Sbjct:   80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150

HSP 2 Score: 57.7658 bits (138), Expect = 1.032e-7
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 2 
Query:   62 KLFVGNIPNG-TSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEF-AGNVINVEIS 265
            K+FVGN+    T+ EEL+ LF+ YG ++   ++K F F+HM     A  AIE L G E   G  + VE+S
Sbjct:    2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMS 71
[Close]
BLAST of RNA-binding protein 4 vs. UniProt/SwissProt
Match: sp|Q5EA36|RBM14_BOVIN (RNA-binding protein 14 OS=Bos taurus OX=9913 GN=RBM14 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.965e-12
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHGG 274
            K+FVGN+    + +EL  LF + G ++E  +VK++ F+HM  E +A  AI  L+G E  G  INVE+S  G
Sbjct:   80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150

HSP 2 Score: 58.5362 bits (140), Expect = 7.592e-8
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 2 
Query:   62 KLFVGNIPNG-TSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEF-AGNVINVEIS 265
            K+FVGN+    T+ EEL+ LF+ YG ++   ++K F F+HM     A  AIE L G E   G  + VE+S
Sbjct:    2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMS 71
[Close]
BLAST of RNA-binding protein 4 vs. TrEMBL
Match: A0A2L2Y5L0 (RNA-binding protein 4.1 (Fragment) OS=Parasteatoda tepidariorum OX=114398 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.599e-16
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISH 268
            TK++VGN+P      EL  LF KYGE+ E  IVKN+ F+HMSSEEEA  AIE L+  +F G+ I+VEISH
Sbjct:    3 TKIYVGNLPENAHNGELQELFEKYGEVKECDIVKNYAFVHMSSEEEAKTAIEALNNIDFMGSKISVEISH 72
[Close]
BLAST of RNA-binding protein 4 vs. TrEMBL
Match: A0A3S3PSV9 (RNA-binding protein 4B-like isoform X2 OS=Dinothrombium tinctorium OX=1965070 GN=B4U79_01841 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-15
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:   17 DCLLIFCHFVIMSGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISH 268
            +C+       + S TK++VGNIP     EE+  LF KYG++ E  +VKNFGF+HMS+EEE   AI+ L+G+EF G  I VE SH
Sbjct:  230 ECIEFKRPLDMSSRTKIYVGNIPESCKTEEIRALFEKYGKVEECDVVKNFGFVHMSTEEETKLAIDALNGSEFMGVKITVEASH 313

HSP 2 Score: 72.7886 bits (177), Expect = 4.703e-10
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISH 268
            TKLFVG +P G + ++L  LF KYG++ E  +V  FGF+H+S  EEA   I+ L    F G+ ++VE+++
Sbjct:    2 TKLFVGRLPEGCTSKDLEELFGKYGKVTECDVVGKFGFVHLSKREEAEECIKKLHKYSFMGSQLSVEVNY 71
[Close]
BLAST of RNA-binding protein 4 vs. TrEMBL
Match: A0A4Y2P6Y2 (RNA-binding protein 4 OS=Araneus ventricosus OX=182803 GN=RBM4 PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.247e-15
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 2 
Query:   50 MSGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISH 268
            M  TK++VGN+P      EL  +F KYGE+ E  IVKN+ F+HMSSE+ A  AIE L+  +F G+ I+VEISH
Sbjct:    1 MRTTKIYVGNLPENADGTELQEMFEKYGEVRECDIVKNYAFVHMSSEDAAKMAIEALNNIDFMGSKISVEISH 73
[Close]
BLAST of RNA-binding protein 4 vs. TrEMBL
Match: A0A210QMN9 (RNA-binding protein lark OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT10011 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.626e-15
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 2 
Query:   41 FVIMSGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISH 268
            F   + TKL+VGN+P    + EL +LF  +G+++E  IV+N+GF+H +  +EA  A E LDGT F G+ + VE+SH
Sbjct:    3 FSNQTTTKLYVGNLPETCKRIELQKLFEPFGQVVECDIVRNYGFVHFADADEAKTAAENLDGTPFEGSTLKVEVSH 78
[Close]
BLAST of RNA-binding protein 4 vs. TrEMBL
Match: B7Q6A0 (RNA binding motif-containing protein, putative (Fragment) OS=Ixodes scapularis OX=6945 GN=8036508 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.902e-14
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 2 
Query:   50 MSGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISH 268
            M  TKL+VG++P G     L  +F+KYG++ E  IVKN+ F+HM++E+EA  AI+ L  +EF G+ I VE SH
Sbjct:    1 MVSTKLYVGSLPEGCDNASLEAIFAKYGKVDECDIVKNYAFVHMANEDEAKLAIDALHNSEFMGSKITVEASH 73
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Cavefish
Match: rbm4.2 (RNA binding motif protein 4.2 [Source:ZFIN;Acc:ZDB-GENE-030131-3019])

HSP 1 Score: 70.8626 bits (172), Expect = 2.693e-14
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
             K+FVGN+ + T+KE+L  LFS YG I E  +++NFGF+HM  +E A+ A+  L      G  INVE+S G
Sbjct:    2 VKIFVGNLTSDTTKEDLHSLFSPYGRIKECDVLRNFGFVHMDDKEAASEAVRKLHHEMLNGQAINVELSRG 72

HSP 2 Score: 55.4546 bits (132), Expect = 6.314e-9
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNV 247
            TKL V +I N  + +EL   F ++G + E  IVK++ F+HM   E+A  AI  LD + F G +
Sbjct:   78 TKLHVSHISNDCTNQELREKFEEFGPVAECDIVKDYAFVHMERREDAMEAISALDNSTFQGEI 140
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Cavefish
Match: rbm4.1 (RNA binding motif protein 4.1 [Source:NCBI gene;Acc:573001])

HSP 1 Score: 70.4774 bits (171), Expect = 6.094e-13
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
            K+FVGN+   T+ +EL  LFS+YG+I E  IVKNFGF+HM  + EA  AI  L      G  +NVE+S G
Sbjct:    3 KIFVGNLSPNTTTDELRSLFSQYGKISECDIVKNFGFVHMDDKAEAEEAIRNLHHYMLNGLAMNVEMSRG 72

HSP 2 Score: 65.855 bits (159), Expect = 1.969e-11
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            TKL VGNI +  + +EL   F +YG ++E  IVK++ F+HM   E+A  AI  LD T F G +++V++S
Sbjct:   78 TKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLS 146
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Cavefish
Match: rbm14b (RNA-binding protein 4-like [Source:NCBI gene;Acc:103039667])

HSP 1 Score: 70.0922 bits (170), Expect = 1.608e-12
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            TK+FVGN+    + E+L  LF  +G++LE   VK + F+HM ++E+A  AIE L GT F G  ++VE+S
Sbjct:   83 TKVFVGNLSGMCTTEDLKELFQTFGKVLECDKVKGYAFVHMENKEDALQAIESLHGTSFKGRPLSVELS 151

HSP 2 Score: 67.0106 bits (162), Expect = 1.294e-11
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
            KLFVGN+   T++EELS +F  YG+++  ++++ F F+H+  E  A  AI  L G EF G  + VE S G
Sbjct:    8 KLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELSGREFKGRNLVVEESRG 77
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Cavefish
Match: ENSAMXT00000025899.2 (RNA-binding protein lark-like [Source:NCBI gene;Acc:103046343])

HSP 1 Score: 68.9366 bits (167), Expect = 1.665e-12
Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:   47 IMSGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            + + TK++VGN+P G +  ++  LF  YG+++E  IVKNF F+HM  E EA  AI  L+ ++  G  I V +S
Sbjct:   74 VRNATKIYVGNVPEGVTAAKIKELFQAYGKVVECDIVKNFAFVHMQRENEALEAIRELNHSKVEGQKIFVSLS 146

HSP 2 Score: 58.9214 bits (141), Expect = 2.786e-9
Identity = 26/69 (37.68%), Postives = 42/69 (60.87%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
             K+FVGN+ + T++ EL  LF ++G + +  I+KN+GF+HM  E+ A  A+  L      G+ I VE +
Sbjct:    2 VKIFVGNVASATTEAELRALFEEHGAVSDCDILKNYGFVHMDEEDAAQKAVAALHKYVLNGSRITVEYA 70
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Cavefish
Match: rbm14b (RNA-binding protein 4-like [Source:NCBI gene;Acc:103039667])

HSP 1 Score: 69.707 bits (169), Expect = 1.957e-12
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            TK+FVGN+    + E+L  LF  +G++LE   VK + F+HM ++E+A  AIE L GT F G  ++VE+S
Sbjct:   83 TKVFVGNLSGMCTTEDLKELFQTFGKVLECDKVKGYAFVHMENKEDALQAIESLHGTSFKGRPLSVELS 151

HSP 2 Score: 66.6254 bits (161), Expect = 1.593e-11
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
            KLFVGN+   T++EELS +F  YG+++  ++++ F F+H+  E  A  AI  L G EF G  + VE S G
Sbjct:    8 KLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELSGREFKGRNLVVEESRG 77
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Sea Lamprey
Match: rbm4.2 (RNA binding motif protein 4.2 [Source:ZFIN;Acc:ZDB-GENE-030131-3019])

HSP 1 Score: 67.3958 bits (163), Expect = 3.005e-13
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
            K+FVGN+P   +K E+  LF ++GE+ E   +K+F F+HMS+  +A  AI  L G    G  ++VE SHG
Sbjct:    3 KIFVGNVPFQATKREIQELFEQHGEVTECEKIKDFAFVHMSAPGDAERAIVALRGHRLHGAALDVEPSHG 72

HSP 2 Score: 65.0846 bits (157), Expect = 1.708e-12
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 2 
Query:   53 SGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            S TK++VGN+    +  EL   F ++G + E  IVK++ F+HM  E++A  AI  LDG+EF G  I V++S
Sbjct:   76 STTKMYVGNVTPDCTNVELRAKFEEFGPVAECDIVKDYAFVHMEREDDARAAIRALDGSEFKGRRILVQLS 146
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Sea Lamprey
Match: srsf3a (serine and arginine rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631])

HSP 1 Score: 52.7582 bits (125), Expect = 1.407e-8
Identity = 26/74 (35.14%), Postives = 38/74 (51.35%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVK---NFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
             K++VGN+ N  +K EL R FS YG +  V + +    F F+      +A  A+  LDG    G+ + VE S G
Sbjct:   15 CKVYVGNLGNNGNKAELERSFSYYGPLRSVWVARAPPGFAFVEFEDPRDAGDAVRELDGRTLCGSRVRVEHSSG 88
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010377.1 (pep scaffold:Pmarinus_7.0:GL481287:28:8451:-1 gene:ENSPMAG00000009397.1 transcript:ENSPMAT00000010377.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 53.5286 bits (127), Expect = 2.400e-8
Identity = 21/71 (29.58%), Postives = 40/71 (56.34%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
            +++++GN+      +++ R F  YG+I+E++I   FGF+      +AN A+  L G E  G  + +E + G
Sbjct:    2 SRIYLGNLSYRARDKDIERFFKGYGKIVEISIKHGFGFVEFDDTRDANDAVCELSGRELCGERVVIEHARG 72
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006373.1 (pep scaffold:Pmarinus_7.0:GL478975:164155:166212:-1 gene:ENSPMAG00000005755.1 transcript:ENSPMAT00000006373.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 51.9878 bits (123), Expect = 6.789e-8
Identity = 23/74 (31.08%), Postives = 41/74 (55.41%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKN---FGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
             K++VGN+ +G ++ +L ++FS YG +  V + +N   F F+      +A  +   LDG    G+ + VE+S G
Sbjct:   15 CKVYVGNLGSGATEYDLEKVFSYYGPLRSVWVARNPPGFAFVQFEDARDARDSCRELDGRLVCGSRVRVEMSTG 88
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Sea Lamprey
Match: sfpq (splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452])

HSP 1 Score: 48.1358 bits (113), Expect = 2.362e-6
Identity = 27/75 (36.00%), Postives = 40/75 (53.33%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTI--VKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS-HGG 274
             +LFVGN+P+  S+E   ++F+KYGE  E+ +   K FGFI + +   A  A   LDG       + V  + HG 
Sbjct:  169 CRLFVGNVPSDLSEEGFRKMFAKYGEPSEIFLNSDKGFGFIRLETRTIAELAKAELDGIMMRNRPLRVRFATHGA 243
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Yeast
Match: NAB3 (RNA-binding protein, subunit of Nrd1 complex (Nrd1p-Nab3p-Sen1p); complex interacts with exosome to mediate 3'-end formation of some mRNAs, snRNAs, snoRNAs, and CUTs; required for termination of non-poly(A) transcripts and efficient splicing; Nrd1-Nab3 pathway appears to have a role in rapid suppression of some genes when cells are shifted to poor growth conditions, indicating role for Nrd1-Nab3 in regulating cellular response to nutrient availability [Source:SGD;Acc:S000006111])

HSP 1 Score: 51.2174 bits (121), Expect = 2.295e-7
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 2 
Query:   59 TKLFVGNIP-NGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIE 214
            ++LF+GN+P    SKE+L R+FS YG I+++ I   FGFI   + +    AIE
Sbjct:  330 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIE 382
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Yeast
Match: NPL3 (RNA-binding protein; promotes elongation, regulates termination, and carries poly(A) mRNA from nucleus to cytoplasm; represses translation initiation by binding eIF4G; required for pre-mRNA splicing; interacts with E3 ubiquitin ligase Bre1p, linking histone ubiquitination to mRNA processing; may have role in telomere maintenance; dissociation from mRNAs promoted by Mtr10p; phosphorylated by Sky1p in cytoplasm; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000002840])

HSP 1 Score: 48.521 bits (114), Expect = 9.767e-7
Identity = 24/69 (34.78%), Postives = 35/69 (50.72%), Query Frame = 2 
Query:   50 MSGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINV 256
            +S T+LFV   P    + EL+ +F  +G + EV I+  F F+     E A  AIE + G  FA   + V
Sbjct:  122 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 190
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Nematostella
Match: EDO29930 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T285])

HSP 1 Score: 69.3218 bits (168), Expect = 2.882e-13
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVE 259
            +KL+VGN+P+   K +L  LF+KYG + +   VKNF F+HM   E A++AI+ LD + F G  I V+
Sbjct:   52 SKLYVGNLPDDCQKHQLQELFAKYGTVSQCDRVKNFAFVHMVGRENADNAIKALDDSLFMGTHIQVQ 118
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Nematostella
Match: EDO30178 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1I6])

HSP 1 Score: 56.225 bits (134), Expect = 5.219e-10
Identity = 26/76 (34.21%), Postives = 40/76 (52.63%), Query Frame = 2 
Query:   50 MSGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKN---FGFIHMSSEEEANHAIELLDGTEFAGNVINVEISH 268
            M  TK++VGN+     + EL   F  YGE+ +V + +N   F F+      +A  A++ LDG    G  + VE+SH
Sbjct:    1 MMTTKVWVGNLGKEGDRHELWEAFKSYGELRDVWVARNPPGFAFVEFYDARDARDAVDALDGERICGQRVKVELSH 76
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Nematostella
Match: EDO39887 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8T7])

HSP 1 Score: 52.373 bits (124), Expect = 1.673e-8
Identity = 19/67 (28.36%), Postives = 40/67 (59.70%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVE 259
             ++++G +P GT+++++ R F  YG + ++ +  N+GF+    + +A+ A+   +G E  G  I VE
Sbjct:    3 CRVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNNYGFVEFEDDRDADDAVYECNGKEMLGERILVE 69
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Nematostella
Match: EDO46547 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RPQ1])

HSP 1 Score: 54.299 bits (129), Expect = 4.247e-8
Identity = 27/75 (36.00%), Postives = 46/75 (61.33%), Query Frame = 2 
Query:   47 IMSGTK-LFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISH 268
            IM   K L+  N+   T++E + + FSK+GE+  V  +K++ FIH  ++E+A  A+E ++ TE  GN I V ++ 
Sbjct:  227 IMDQVKVLYARNLLLSTTEETIEQAFSKFGEVERVKKIKDYCFIHFRTKEQARDAMEAMNETELDGNEIEVTLAK 301
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Nematostella
Match: EDO31305 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SYA8])

HSP 1 Score: 49.2914 bits (116), Expect = 2.218e-7
Identity = 22/74 (29.73%), Postives = 38/74 (51.35%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKN---FGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
            +++++GNI +  SK E+ R F  +G + +V + +N   F F       +A  A+  LDG    G    VE++ G
Sbjct:    2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELAKG 75
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Medaka
Match: ENSORLT00000031267.1 (RNA-binding protein 4B [Source:NCBI gene;Acc:101169980])

HSP 1 Score: 76.2554 bits (186), Expect = 7.726e-15
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 2 
Query:   20 CLLIFCHFVIMS--GTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
            C++ FC  +  S    K+FVGN+P   ++EE+  LF +YG + E  I+KNF F+HM   + A  AI+ L      G  INVE SHG
Sbjct:   14 CIVFFCVSLSCSLKMVKIFVGNLPREATEEEIKALFEEYGAVTECAIIKNFAFVHMEDRKAATKAIKNLHQHSLHGTAINVEASHG 99

HSP 2 Score: 61.2326 bits (147), Expect = 6.022e-10
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
             K+ V N+  G   EEL  LF +YG + E  +VKNF F+HM + +EA  AI+ LD ++F    I+V++S
Sbjct:  105 VKIHVANVEKGCD-EELRALFEEYGTVSECAVVKNFAFVHMPNYDEAMDAIKELDNSDFQEKRIHVQVS 172
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Medaka
Match: rbm4.1 (RNA-binding protein 4.1 [Source:NCBI gene;Acc:101169378])

HSP 1 Score: 75.0998 bits (183), Expect = 2.711e-14
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
            K+F+GN+   T+ EEL  LFS+YG+I E +IVKNFGF+HM S+ EA  AI  L   E     +NVE+S G
Sbjct:    3 KIFIGNLAPETTTEELRSLFSQYGKIAECSIVKNFGFVHMDSKAEAEEAIRNLHQYELNAQPMNVELSRG 72

HSP 2 Score: 63.1586 bits (152), Expect = 1.838e-10
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
            TKL VGNI    + +EL   F ++G +LE  IVKN+ F+HM   E+A  AI  LD T F G +++V++S
Sbjct:   78 TKLHVGNI--ACTNQELRAKFEEFGAVLECDIVKNYAFVHMERMEDAMEAINKLDNTAFKGKLMSVKLS 144
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Medaka
Match: ENSORLT00000015617.2 (RNA-binding protein 4.1-like [Source:NCBI gene;Acc:101169128])

HSP 1 Score: 73.559 bits (179), Expect = 5.565e-14
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
             K+FVGN+P   ++EE+  LF +YG + E  IVKNF F+HM   + A  AI+ L      G  INVE SHG
Sbjct:    2 VKIFVGNLPQEATEEEIKALFEEYGTVTECDIVKNFAFVHMEDRKAATKAIKNLHQHSLHGTAINVEASHG 72

HSP 2 Score: 61.6178 bits (148), Expect = 4.008e-10
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
             K+ V N+  G   EEL  LF +YG + E  +VKNF F+HM + +EA  AI+ LD ++F    I+V++S
Sbjct:   78 VKIHVANVEKGCD-EELRALFEEYGTVSECAVVKNFAFVHMPNYDEAMDAIKELDNSDFQEKRIHVQVS 145
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Medaka
Match: ENSORLT00000029913.1 (RNA-binding protein 4.1-like [Source:NCBI gene;Acc:101169128])

HSP 1 Score: 73.559 bits (179), Expect = 5.565e-14
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
             K+FVGN+P   ++EE+  LF +YG + E  IVKNF F+HM   + A  AI+ L      G  INVE SHG
Sbjct:    2 VKIFVGNLPQEATEEEIKALFEEYGTVTECDIVKNFAFVHMEDRKAATKAIKNLHQHSLHGTAINVEASHG 72

HSP 2 Score: 61.6178 bits (148), Expect = 4.008e-10
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
             K+ V N+  G   EEL  LF +YG + E  +VKNF F+HM + +EA  AI+ LD ++F    I+V++S
Sbjct:   78 VKIHVANVEKGCD-EELRALFEEYGTVSECAVVKNFAFVHMPNYDEAMDAIKELDNSDFQEKRIHVQVS 145
[Close]
BLAST of RNA-binding protein 4 vs. Ensembl Medaka
Match: ENSORLT00000014524.2 (RNA-binding protein 4B [Source:NCBI gene;Acc:101169980])

HSP 1 Score: 72.7886 bits (177), Expect = 8.923e-14
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
             K+FVGN+P   ++EE+  LF +YG + E  I+KNF F+HM   + A  AI+ L      G  INVE SHG
Sbjct:    2 VKIFVGNLPREATEEEIKALFEEYGAVTECAIIKNFAFVHMEDRKAATKAIKNLHQHSLHGTAINVEASHG 72

HSP 2 Score: 61.6178 bits (148), Expect = 4.544e-10
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
             K+ V N+  G   EEL  LF +YG + E  +VKNF F+HM + +EA  AI+ LD ++F    I+V++S
Sbjct:   78 VKIHVANVEKGCD-EELRALFEEYGTVSECAVVKNFAFVHMPNYDEAMDAIKELDNSDFQEKRIHVQVS 145
[Close]
BLAST of RNA-binding protein 4 vs. Planmine SMEST
Match: SMESG000033438.1 (SMESG000033438.1)

HSP 1 Score: 312.383 bits (799), Expect = 8.259e-106
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 2 
Query:   50 MSGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHGGXXXXXXXXXXXVLPRKSYGRNEEXXXXXXXXXXXXXXHYSNNDRTRHRDAPHNPLEALSGRPDLPIAASMLAATLLNPNTLSLLQNMAXXXXXXXXXXXXXXXXXXYSRRTPPRTERYSSSRYQTHE 655
            MSGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHGGKDKRSRDDSRRVLPRKSYGRNEERDSRDGYRSSRYDGHYSNNDRTRHRDAPHNPLEALSGRPDLPIAASMLAATLLNPNTLSLLQNMANIRNLGNREENGNRDDRRYSRRTPPRTERYSSSRYQTHE
Sbjct:    1 MSGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHGGKDKRSRDDSRRVLPRKSYGRNEERDSRDGYRSSRYDGHYSNNDRTRHRDAPHNPLEALSGRPDLPIAASMLAATLLNPNTLSLLQNMANIRNLGNREENGNRDDRRYSRRTPPRTERYSSSRYQTHE 202
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BLAST of RNA-binding protein 4 vs. Planmine SMEST
Match: SMESG000033438.1 (SMESG000033438.1)

HSP 1 Score: 224.557 bits (571), Expect = 4.971e-72
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 2 
Query:  179 MSSEEEANHAIELLDGTEFAGNVINVEISHGGXXXXXXXXXXXVLPRKSYGRNEEXXXXXXXXXXXXXXHYSNNDRTRHRDAPHNPLEALSGRPDLPIAASMLAATLLNPNTLSLLQNMAXXXXXXXXXXXXXXXXXXYSRRTPPRTERYSSSRYQTHE 655
            MSSEEEANHAIELLDGTEFAGNVINVEISHGGKDKRSRDDSRRVLPRKSYGRNEERDSRDGYRSSRYDGHYSNNDRTRHRDAPHNPLEALSGRPDLPIAASMLAATLLNPNTLSLLQNMANIRNLGNREENGNRDDRRYSRRTPPRTERYSSSRYQTHE
Sbjct:    1 MSSEEEANHAIELLDGTEFAGNVINVEISHGGKDKRSRDDSRRVLPRKSYGRNEERDSRDGYRSSRYDGHYSNNDRTRHRDAPHNPLEALSGRPDLPIAASMLAATLLNPNTLSLLQNMANIRNLGNREENGNRDDRRYSRRTPPRTERYSSSRYQTHE 159
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BLAST of RNA-binding protein 4 vs. Planmine SMEST
Match: SMESG000059552.1 (SMESG000059552.1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.130e-9
Identity = 23/69 (33.33%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEIS 265
             KLFVGN+P   S + L  +F  Y ++ +  ++ N+GF+++ ++E A HA+  ++G E+ G  I V+ +
Sbjct:    2 VKLFVGNLPPSASNQSLKEIFQNYKDLQDYKLISNYGFVYLETQESAIHAVNNINGLEYRGFTIAVDFA 70
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BLAST of RNA-binding protein 4 vs. Planmine SMEST
Match: SMESG000006493.1 (SMESG000006493.1)

HSP 1 Score: 53.1434 bits (126), Expect = 1.663e-8
Identity = 23/74 (31.08%), Postives = 42/74 (56.76%), Query Frame = 2 
Query:   59 TKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKN---FGFIHMSSEEEANHAIELLDGTEFAGNVINVEISHG 271
             K++VG++P   +++E+ + F  +G I  V + +N   F F+      +A  A++ LDG+   G  + VE+SHG
Sbjct:    8 VKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHG 81
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BLAST of RNA-binding protein 4 vs. Planmine SMEST
Match: SMESG000045501.1 (SMESG000045501.1)

HSP 1 Score: 54.299 bits (129), Expect = 8.323e-8
Identity = 21/69 (30.43%), Postives = 39/69 (56.52%), Query Frame = 2 
Query:   62 KLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIELLDGTEFAGNVINVEISH 268
            +L+VGN+P    + ++ + F +YG I  V I   +GF+ +    +A  A+  LDG++  G  + VE++ 
Sbjct:    3 RLYVGNLPRRIEERDIKKFFREYGRIRSVDIKNGYGFVEIDDRRDAEDAVHDLDGSKLLGERVTVEMAR 71
The following BLAST results are available for this feature:
BLAST of RNA-binding protein 4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RBM142.430e-1342.25RNA binding motif protein 14 [Source:HGNC Symbol;A... [more]
RBM149.544e-1342.25RNA binding motif protein 14 [Source:HGNC Symbol;A... [more]
RBM4B1.731e-1143.66RNA binding motif protein 4B [Source:HGNC Symbol;A... [more]
RBM4B1.731e-1143.66RNA binding motif protein 4B [Source:HGNC Symbol;A... [more]
RBM41.842e-1143.66RNA binding motif protein 4 [Source:HGNC Symbol;Ac... [more]
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BLAST of RNA-binding protein 4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rnp-19.721e-934.78RNA-binding protein rnp-1 [Source:UniProtKB/Swiss... [more]
rbm-3.14.888e-836.59RNA Binding Motif protein homolog [Source:UniProt... [more]
rbm-3.22.813e-729.63RNA Binding Motif protein homolog [Source:UniProt... [more]
tiar-33.759e-740.91TIA-1/TIAL RNA binding protein homolog [Source:Un... [more]
rsp-26.417e-725.53Probable splicing factor, arginine/serine-rich 2 ... [more]
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BLAST of RNA-binding protein 4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
lark1.838e-1142.65gene:FBgn0011640 transcript:FBtr0076843[more]
lark1.838e-1142.65gene:FBgn0011640 transcript:FBtr0076844[more]
lark1.838e-1142.65gene:FBgn0011640 transcript:FBtr0076842[more]
lark1.838e-1142.65gene:FBgn0011640 transcript:FBtr0076841[more]
lark1.838e-1142.65gene:FBgn0011640 transcript:FBtr0076845[more]
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BLAST of RNA-binding protein 4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm4.16.994e-1550.70RNA binding motif protein 4.1 [Source:NCBI gene;Ac... [more]
rbm4.15.244e-1450.70RNA binding motif protein 4.1 [Source:NCBI gene;Ac... [more]
rbm4.36.428e-1349.28RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB... [more]
rbm4.36.428e-1349.28RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB... [more]
rbm14b8.688e-1344.93RNA binding motif protein 14b [Source:ZFIN;Acc:ZDB... [more]
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BLAST of RNA-binding protein 4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm144.372e-1443.48RNA binding motif protein 14 [Source:NCBI gene;Acc... [more]
rbm4b1.315e-1143.66NF-kappa-B inhibitor zeta-like [Source:Xenbase;Acc... [more]
snx151.320e-1038.89sorting nexin 15 [Source:NCBI gene;Acc:734054][more]
srsf51.051e-828.57serine/arginine-rich splicing factor 5 [Source:NCB... [more]
sms1.177e-837.84spermine synthase [Source:Xenbase;Acc:XB-GENE-9535... [more]
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BLAST of RNA-binding protein 4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rbm146.213e-1342.25RNA binding motif protein 14 [Source:MGI Symbol;Ac... [more]
Rbm149.081e-1342.25RNA binding motif protein 14 [Source:MGI Symbol;Ac... [more]
Rbm45.482e-1243.66RNA binding motif protein 4 [Source:MGI Symbol;Acc... [more]
Rbm4b9.593e-1243.66RNA binding motif protein 4B [Source:MGI Symbol;Ac... [more]
Rbm49.753e-1243.66RNA binding motif protein 4 [Source:MGI Symbol;Acc... [more]
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BLAST of RNA-binding protein 4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q6IQ97|RBM41_DANRE3.958e-1350.70RNA-binding protein 4.1 OS=Danio rerio OX=7955 GN=... [more]
sp|Q8C2Q3|RBM14_MOUSE4.346e-1242.25RNA-binding protein 14 OS=Mus musculus OX=10090 GN... [more]
sp|Q96PK6|RBM14_HUMAN4.583e-1242.25RNA-binding protein 14 OS=Homo sapiens OX=9606 GN=... [more]
sp|Q5RC41|RBM14_PONAB4.707e-1242.25RNA-binding protein 14 OS=Pongo abelii OX=9601 GN=... [more]
sp|Q5EA36|RBM14_BOVIN4.965e-1242.25RNA-binding protein 14 OS=Bos taurus OX=9913 GN=RB... [more]
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BLAST of RNA-binding protein 4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2L2Y5L05.599e-1657.14RNA-binding protein 4.1 (Fragment) OS=Parasteatoda... [more]
A0A3S3PSV91.824e-1548.81RNA-binding protein 4B-like isoform X2 OS=Dinothro... [more]
A0A4Y2P6Y22.247e-1552.05RNA-binding protein 4 OS=Araneus ventricosus OX=18... [more]
A0A210QMN96.626e-1544.74RNA-binding protein lark OS=Mizuhopecten yessoensi... [more]
B7Q6A03.902e-1447.95RNA binding motif-containing protein, putative (Fr... [more]
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BLAST of RNA-binding protein 4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm4.22.693e-1446.48RNA binding motif protein 4.2 [Source:ZFIN;Acc:ZDB... [more]
rbm4.16.094e-1350.00RNA binding motif protein 4.1 [Source:NCBI gene;Ac... [more]
rbm14b1.608e-1244.93RNA-binding protein 4-like [Source:NCBI gene;Acc:1... [more]
ENSAMXT00000025899.21.665e-1241.10RNA-binding protein lark-like [Source:NCBI gene;Ac... [more]
rbm14b1.957e-1244.93RNA-binding protein 4-like [Source:NCBI gene;Acc:1... [more]
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BLAST of RNA-binding protein 4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm4.23.005e-1342.86RNA binding motif protein 4.2 [Source:ZFIN;Acc:ZDB... [more]
srsf3a1.407e-835.14serine and arginine rich splicing factor 3a [Sourc... [more]
ENSPMAT00000010377.12.400e-829.58pep scaffold:Pmarinus_7.0:GL481287:28:8451:-1 gene... [more]
ENSPMAT00000006373.16.789e-831.08pep scaffold:Pmarinus_7.0:GL478975:164155:166212:-... [more]
sfpq2.362e-636.00splicing factor proline/glutamine-rich [Source:ZFI... [more]
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BLAST of RNA-binding protein 4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
NAB32.295e-743.40RNA-binding protein, subunit of Nrd1 complex (Nrd1... [more]
NPL39.767e-734.78RNA-binding protein; promotes elongation, regulate... [more]
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BLAST of RNA-binding protein 4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO299302.882e-1344.78Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO301785.219e-1034.21Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO398871.673e-828.36Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO465474.247e-836.00Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO313052.218e-729.73Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of RNA-binding protein 4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSORLT00000031267.17.726e-1541.86RNA-binding protein 4B [Source:NCBI gene;Acc:10116... [more]
rbm4.12.711e-1451.43RNA-binding protein 4.1 [Source:NCBI gene;Acc:1011... [more]
ENSORLT00000015617.25.565e-1446.48RNA-binding protein 4.1-like [Source:NCBI gene;Acc... [more]
ENSORLT00000029913.15.565e-1446.48RNA-binding protein 4.1-like [Source:NCBI gene;Acc... [more]
ENSORLT00000014524.28.923e-1445.07RNA-binding protein 4B [Source:NCBI gene;Acc:10116... [more]
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BLAST of RNA-binding protein 4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000033438.18.259e-106100.00SMESG000033438.1[more]
SMESG000033438.14.971e-72100.00SMESG000033438.1[more]
SMESG000059552.11.130e-933.33SMESG000059552.1[more]
SMESG000006493.11.663e-831.08SMESG000006493.1[more]
SMESG000045501.18.323e-830.43SMESG000045501.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30034299 ID=SMED30034299|Name=RNA-binding protein 4|organism=Schmidtea mediterranea sexual|type=transcript|length=1263bp
CTTTGTTTAAAATTTTGATTGTTTACTAATATTTTGCCATTTTGTCATCA
TGTCTGGTACAAAACTTTTTGTTGGTAACATACCTAATGGTACCTCTAAA
GAGGAGTTATCACGTTTATTTTCAAAATATGGCGAAATTTTGGAAGTTAC
AATTGTTAAAAATTTCGGATTTATTCATATGAGTTCAGAAGAAGAAGCTA
ATCATGCTATTGAACTTTTAGATGGTACTGAATTTGCCGGTAATGTTATA
AATGTTGAAATAAGTCATGGTGGAAAAGACAAAAGATCTAGAGATGATAG
TAGAAGAGTTCTTCCTCGCAAATCATATGGTCGAAATGAGGAGCGCGATT
CTCGTGATGGTTATCGTAGTAGCCGATATGATGGACATTACTCTAATAAT
GATCGTACTCGACACAGAGATGCTCCTCACAATCCTCTCGAAGCTCTCAG
TGGTCGCCCAGATCTACCTATCGCAGCCTCAATGCTTGCCGCAACTCTAC
TAAATCCTAATACTCTCAGTCTTTTACAAAATATGGCGAACATCAGAAAT
TTAGGCAATCGTGAAGAAAATGGCAATCGAGATGATCGCCGATATTCACG
AAGGACTCCACCAAGGACTGAGAGATACAGTTCGTCTAGATATCAAACAC
ATGAAAGAAGACATCGTTCAAGAAGTGATAGGTCGCCAGATCGCAGTTAT
TCAAGGCGTCATTAGTTTCCTGTATATTTAATTATTCTGTATTGTCTAAC
CCTGTGGTACCGTCAGCTTCTCTCATTCGTTAGTGGTCGCTATCTCAAAT
TCCACTCAAAAGATGGCTCGTTCAGCAATATATTTAATGTAGTGTCGATA
TGTTATAGTAAAATGTTTTGAATCTGCTTCTAACCGTTGTTATTATTACA
AAGAACTAAAAATATTACGTCCGGTTATGGAATGTGATTAAGGAGGTTGT
AGAAATATTATCCATGAGTGCGTAAGATTTTAATATCTTGTTATTTAAAG
TGATTCGTATTAGTTTAAAATTTATCGATCTTATATTTGAATTTAAAGTA
AACTGAAAAGCGTTTCGAATTTTTTAATGGTGGTAATAATTAGAGAATCA
ATTGGTAACTGGCAGATTTCACATTTGGAAGTACTTAAAGAAAATGAAAT
ATATCATGTACTATGGGAAACGCTTATTAAATAAGGAAATATATTTATGT
AATATGGCAGTGTTTGGTTATCTGTTACTCGTTGGAAAAGTGACGCTTTA
CTTTTCAAATGGT
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protein sequence of SMED30034299-orf-1

>SMED30034299-orf-1 ID=SMED30034299-orf-1|Name=SMED30034299-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=222bp
MSGTKLFVGNIPNGTSKEELSRLFSKYGEILEVTIVKNFGFIHMSSEEEA
NHAIELLDGTEFAGNVINVEISHGGKDKRSRDDSRRVLPRKSYGRNEERD
SRDGYRSSRYDGHYSNNDRTRHRDAPHNPLEALSGRPDLPIAASMLAATL
LNPNTLSLLQNMANIRNLGNREENGNRDDRRYSRRTPPRTERYSSSRYQT
HERRHRSRSDRSPDRSYSRRH*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0008270zinc ion binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 5..70
e-value: 3.3E-22
score: 89.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 6..67
e-value: 3.4E-17
score: 62.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 4..74
score: 17.916
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 1..89
e-value: 2.2E-22
score: 81.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 169..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 171..221
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 4..113
NoneNo IPR availablePANTHERPTHR23147:SF100ZGC:77262coord: 4..113
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 3..103