Ribosomal protein L24

Overview
NameRibosomal protein L24
Smed IDSMED30034290
Length (bp)846
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Ribosomal protein L24 (SMED30034290) t-SNE clustered cells

Violin plots show distribution of expression levels for Ribosomal protein L24 (SMED30034290) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Ribosomal protein L24 (SMED30034290) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Ribosomal protein L24 (SMED30034290) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30034290

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30034290h1SMcG0007317 SmedASXL_012730SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
gutSMED30034290h1SMcG0007317 dd_Smed_v4_1638_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30034290h1SMcG0007317 dd_Smed_v4_1638_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30034290h1SMcG0007317 dd_Smed_v4_1638_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30034290h1SMcG0007317 dd_Smed_v4_1638_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30034290h1SMcG0007317 Contig49772newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30034290h1SMcG0007317 Contig49772uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Human
Match: MRPL24 (mitochondrial ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC:14037])

HSP 1 Score: 103.219 bits (256), Expect = 5.550e-26
Identity = 66/171 (38.60%), Postives = 96/171 (56.14%), Query Frame = 2 
Query:  308 LDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNC---IIYKDPN-QNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            + + ++  F GD V++L G D GK G +  VI+ R+ V+V  LN     I K  + +  ++  E PL +  +V L+DPMD KP E+EWR+   G  VRVS R+ RIIP P   +A   G +P     GPKDT     LE TY P L+T  E++ E   I++ R+  + +WY
Sbjct:   49 ISDEDWYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTMDYRGTMIPSEAPL-LHRQVKLVDPMDRKPTEIEWRFTEAGERVRVSTRSGRIIPKPEFPRA--DGIVPETWIDGPKDTSVEDALERTYVPCLKTLQEEVMEAMGIKETRKYKKVYWY 216
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Human
Match: MRPL24 (mitochondrial ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC:14037])

HSP 1 Score: 103.219 bits (256), Expect = 5.550e-26
Identity = 66/171 (38.60%), Postives = 96/171 (56.14%), Query Frame = 2 
Query:  308 LDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNC---IIYKDPN-QNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            + + ++  F GD V++L G D GK G +  VI+ R+ V+V  LN     I K  + +  ++  E PL +  +V L+DPMD KP E+EWR+   G  VRVS R+ RIIP P   +A   G +P     GPKDT     LE TY P L+T  E++ E   I++ R+  + +WY
Sbjct:   49 ISDEDWYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTMDYRGTMIPSEAPL-LHRQVKLVDPMDRKPTEIEWRFTEAGERVRVSTRSGRIIPKPEFPRA--DGIVPETWIDGPKDTSVEDALERTYVPCLKTLQEEVMEAMGIKETRKYKKVYWY 216
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Human
Match: MRPL24 (mitochondrial ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC:14037])

HSP 1 Score: 68.9366 bits (167), Expect = 1.389e-13
Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = 2 
Query:  308 LDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNC---IIYKDPN-QNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYP 625
            + + ++  F GD V++L G D GK G +  VI+ R+ V+V  LN     I K  + +  ++  E PL +  +V L+DPMD KP E+EWR+   G  VRVS R+ RIIP P
Sbjct:   49 ISDEDWYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTMDYRGTMIPSEAPL-LHRQVKLVDPMDRKPTEIEWRFTEAGERVRVSTRSGRIIPKP 157
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Celegans
Match: mrpl-24 (Probable 39S ribosomal protein L24, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P91353])

HSP 1 Score: 83.9593 bits (206), Expect = 9.945e-19
Identity = 72/220 (32.73%), Postives = 114/220 (51.82%), Query Frame = 2 
Query:  194 SEKYPWNMANRLSSFPYPDIFWTIV----YADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNCIIYKD--PNQNVIVKKEL-----PLRI-KHEVSLIDPMDNKPCEVEWRYDSDGN-HVRVSKRTERIIPYPLAAQALDSGEIPA--LMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            S + PW      S     D +++      Y + R+ KS+   + + E+ FF GD VQV+VG DKG+ G++ +  +    VIVD L+  + +D   ++ + V K L     PL + K +V L+DP D +PCE  W+ +  G+ ++RVS R+   IP P  A+       P   +   G KDT    +LE TY P + +F ++I E+  I++ R    TFWY
Sbjct:   62 SHRRPWEDKQISSHLHRSDKYFSAQLSNQYFNLRRPKSER--MADTEWTFFPGDLVQVMVGKDKGRQGLVLTTSRDSSDVIVDGLHTKLGEDMEGSEKLGVDKTLRWQEQPLSVSKKQVMLVDPNDEQPCEARWQLNGPGDEYIRVSTRSGYEIPIPSQAKVTYEYLQPENYIEVEG-KDTPADAVLERTYMPKVASFEQEIMEEMGIKEERTPKPTFWY 278
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Fly
Match: mRpL24 (gene:FBgn0031651 transcript:FBtr0079058)

HSP 1 Score: 104.375 bits (259), Expect = 2.330e-26
Identity = 65/167 (38.92%), Postives = 96/167 (57.49%), Query Frame = 2 
Query:  320 EFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNCIIYKDPNQ----NVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            ++ FF+GDR++VLVG DKGK GI++ VI  R+ VIV+ LN    K   +     +I+K E PL +  ++ L+DP D +  + EWR+  +G  VRVS R+ RIIP P         + P       KDT  A + E T++P L TF  DI E+  I++ R   +++WY
Sbjct:   81 DWSFFRGDRIEVLVGKDKGKQGIVTQVIPERNWVIVEGLNWHYRKVGGEKEFPGIIIKSEAPLHVTKDIRLVDPSDLQGTDFEWRFTEEGEKVRVSLRSGRIIPIPETNNQTHDYKTPNAYIEREKDTPGAVVGEITFQPKLSTFEMDIMEEMGIKEERTPVKSYWY 247
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Zebrafish
Match: mrpl24 (mitochondrial ribosomal protein L24 [Source:NCBI gene;Acc:436674])

HSP 1 Score: 119.013 bits (297), Expect = 3.262e-32
Identity = 77/212 (36.32%), Postives = 116/212 (54.72%), Query Frame = 2 
Query:  185 WEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNC----IIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            + Y    PW +A R  + P             R+ K  ++ +   ++P  +GD V+VL G +KGK G ++ VI+ R+ VI++ LN     +      +   +  E PL +K +++LIDP D KP E++WRY  +G  VRVS RT RIIP P+  +    G +P     GPKDT P   L+ TY P L+T  E++ EK  IQ+NRR  +++WY
Sbjct:   19 YRYGTNRPWTIAARRLNPP-----------GKRRRKVFVEPIANEDWPVVRGDTVEVLSGKEKGKQGKVAQVIRARNWVILEGLNTHYRYVGRSGDYRGTYLASEAPLLLK-DIALIDPTDRKPTEIQWRYTEEGERVRVSVRTGRIIPKPVFQR--KDGIVPQQWKDGPKDTSPEDTLQKTYTPSLKTLEEEVMEKMNIQENRRPRKSYWY 216
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Xenopus
Match: aak1 (AP2 associated kinase 1 [Source:Xenbase;Acc:XB-GENE-986555])

HSP 1 Score: 114.39 bits (285), Expect = 3.075e-30
Identity = 73/187 (39.04%), Postives = 110/187 (58.82%), Query Frame = 2 
Query:  281 RKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNCII-----------YKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            R+SK  ++ + + E+ +F+GD V+VL G D GK G ++ V++ R+ V++D LN               KD +Q        PLR+  + +L+DP D KP ++EWRY  +G+ VRVS R+ RIIP P+  +    G IP     GPKDT     LE TY P L+TF E+I EK  I++NR++ +++WY
Sbjct:   40 RRSKVFVEPVSKEEWQYFRGDTVEVLHGKDAGKQGKVTQVVRARNWVVIDGLNTKAVDIGRLTDWGGLKDFDQ-------APLRLNRQ-NLVDPTDRKPTDIEWRYTEEGDRVRVSVRSGRIIPKPVLQRR--DGIIPEQWKDGPKDTSVEDALERTYVPSLKTFQEEIMEKMGIEENRQQRKSYWY 216
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Xenopus
Match: aak1 (AP2 associated kinase 1 [Source:Xenbase;Acc:XB-GENE-986555])

HSP 1 Score: 103.219 bits (256), Expect = 5.275e-26
Identity = 67/178 (37.64%), Postives = 104/178 (58.43%), Query Frame = 2 
Query:  281 RKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNCI--IYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            R+SK  ++ + + E+ +F+GD V+VL G D GK G ++ V++ R+ V++D LN    I +  +  + V     + +       DP   KP ++EWRY  +G+ VRVS R+ RIIP P+  +    G IP     GPKDT     LE TY P L+TF E+I EK  I++NR++ +++WY
Sbjct:   40 RRSKVFVEPVSKEEWQYFRGDTVEVLHGKDAGKQGKVTQVVRARNWVVIDGLNTAVDIGRLTDWGLCVNIFAYVTLYSLFFFCDP-GRKPTDIEWRYTEEGDRVRVSVRSGRIIPKPVLQRR--DGIIPEQWKDGPKDTSVEDALERTYVPSLKTFQEEIMEKMGIEENRQQRKSYWY 214
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Mouse
Match: Mrpl24 (mitochondrial ribosomal protein L24 [Source:MGI Symbol;Acc:MGI:1914957])

HSP 1 Score: 115.546 bits (288), Expect = 7.356e-31
Identity = 74/220 (33.64%), Postives = 117/220 (53.18%), Query Frame = 2 
Query:  161 SEKRSYPLWEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNC----IIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            S+  S P + Y    P ++A++  + P+            R+    ++ + + ++  F GD V++L G D GK G +  V++ R+ V+++ LN     I     ++  ++  E PL + H+V L+DP+D KP E++WR+   G  VRVS R+ RIIP P   +A   G +P   T GPKDT     LE TY P L+T  ED+ E   IQ+ RR  + +WY
Sbjct:   11 SKATSSPFYRYGMSRPGSIADKRKNPPW-----------SRRRPVVVEPISDEDWHLFCGDMVEILEGKDAGKQGKVVQVVRQRNWVVLEGLNTHYRYIGRTKDHRGTMIASEAPL-LHHQVKLVDPVDRKPTEIQWRFTEAGERVRVSTRSGRIIPKPEFPRA--DGIVPETWTDGPKDTSVEDALERTYVPRLKTLEEDVMEAMGIQETRRFKKVYWY 216
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Mouse
Match: Mrpl24 (mitochondrial ribosomal protein L24 [Source:MGI Symbol;Acc:MGI:1914957])

HSP 1 Score: 115.546 bits (288), Expect = 7.356e-31
Identity = 74/220 (33.64%), Postives = 117/220 (53.18%), Query Frame = 2 
Query:  161 SEKRSYPLWEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNC----IIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            S+  S P + Y    P ++A++  + P+            R+    ++ + + ++  F GD V++L G D GK G +  V++ R+ V+++ LN     I     ++  ++  E PL + H+V L+DP+D KP E++WR+   G  VRVS R+ RIIP P   +A   G +P   T GPKDT     LE TY P L+T  ED+ E   IQ+ RR  + +WY
Sbjct:   11 SKATSSPFYRYGMSRPGSIADKRKNPPW-----------SRRRPVVVEPISDEDWHLFCGDMVEILEGKDAGKQGKVVQVVRQRNWVVLEGLNTHYRYIGRTKDHRGTMIASEAPL-LHHQVKLVDPVDRKPTEIQWRFTEAGERVRVSTRSGRIIPKPEFPRA--DGIVPETWTDGPKDTSVEDALERTYVPRLKTLEEDVMEAMGIQETRRFKKVYWY 216
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Mouse
Match: Mrpl24 (mitochondrial ribosomal protein L24 [Source:MGI Symbol;Acc:MGI:1914957])

HSP 1 Score: 115.546 bits (288), Expect = 7.356e-31
Identity = 74/220 (33.64%), Postives = 117/220 (53.18%), Query Frame = 2 
Query:  161 SEKRSYPLWEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNC----IIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            S+  S P + Y    P ++A++  + P+            R+    ++ + + ++  F GD V++L G D GK G +  V++ R+ V+++ LN     I     ++  ++  E PL + H+V L+DP+D KP E++WR+   G  VRVS R+ RIIP P   +A   G +P   T GPKDT     LE TY P L+T  ED+ E   IQ+ RR  + +WY
Sbjct:   11 SKATSSPFYRYGMSRPGSIADKRKNPPW-----------SRRRPVVVEPISDEDWHLFCGDMVEILEGKDAGKQGKVVQVVRQRNWVVLEGLNTHYRYIGRTKDHRGTMIASEAPL-LHHQVKLVDPVDRKPTEIQWRFTEAGERVRVSTRSGRIIPKPEFPRA--DGIVPETWTDGPKDTSVEDALERTYVPRLKTLEEDVMEAMGIQETRRFKKVYWY 216
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Mouse
Match: Mrpl24 (mitochondrial ribosomal protein L24 [Source:MGI Symbol;Acc:MGI:1914957])

HSP 1 Score: 115.546 bits (288), Expect = 7.356e-31
Identity = 74/220 (33.64%), Postives = 117/220 (53.18%), Query Frame = 2 
Query:  161 SEKRSYPLWEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNC----IIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            S+  S P + Y    P ++A++  + P+            R+    ++ + + ++  F GD V++L G D GK G +  V++ R+ V+++ LN     I     ++  ++  E PL + H+V L+DP+D KP E++WR+   G  VRVS R+ RIIP P   +A   G +P   T GPKDT     LE TY P L+T  ED+ E   IQ+ RR  + +WY
Sbjct:   11 SKATSSPFYRYGMSRPGSIADKRKNPPW-----------SRRRPVVVEPISDEDWHLFCGDMVEILEGKDAGKQGKVVQVVRQRNWVVLEGLNTHYRYIGRTKDHRGTMIASEAPL-LHHQVKLVDPVDRKPTEIQWRFTEAGERVRVSTRSGRIIPKPEFPRA--DGIVPETWTDGPKDTSVEDALERTYVPRLKTLEEDVMEAMGIQETRRFKKVYWY 216
[Close]
BLAST of Ribosomal protein L24 vs. UniProt/SwissProt
Match: sp|Q6GPM4|RM24_XENLA (Probable 39S ribosomal protein L24, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl24 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.970e-34
Identity = 78/180 (43.33%), Postives = 109/180 (60.56%), Query Frame = 2 
Query:  281 RKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNC----IIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            R+SK  ++ + + E+ +F+GD V+VL G D GK G ++ V++ R+ V+VD LN     +   D  +   V  E PL + ++VSLIDP D KP E+EWRY  +G  VRVS R+ RIIP P+  +    G IP     GPKDT     LE TY P L+TF E+I EK  I +NRR  +++WY
Sbjct:   40 RRSKVFVEPVSKEEWQYFRGDTVEVLHGKDAGKQGKVTQVVRARNWVVVDGLNTHFRYVGRTDEYRGTYVASEGPL-LLNQVSLIDPTDRKPTEIEWRYTEEGERVRVSARSGRIIPKPVLQRR--DGIIPEQWKDGPKDTSVEDALERTYVPSLKTFQEEIMEKTGIAENRRHRKSYWY 216
[Close]
BLAST of Ribosomal protein L24 vs. UniProt/SwissProt
Match: sp|Q6DH02|RM24_DANRE (Probable 39S ribosomal protein L24, mitochondrial OS=Danio rerio OX=7955 GN=mrpl24 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.462e-31
Identity = 77/212 (36.32%), Postives = 116/212 (54.72%), Query Frame = 2 
Query:  185 WEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNC----IIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            + Y    PW +A R  + P             R+ K  ++ +   ++P  +GD V+VL G +KGK G ++ VI+ R+ VI++ LN     +      +   +  E PL +K +++LIDP D KP E++WRY  +G  VRVS RT RIIP P+  +    G +P     GPKDT P   L+ TY P L+T  E++ EK  IQ+NRR  +++WY
Sbjct:   19 YRYGTNRPWTIAARRLNPP-----------GKRRRKVFVEPIANEDWPVVRGDTVEVLSGKEKGKQGKVAQVIRARNWVILEGLNTHYRYVGRSGDYRGTYLASEAPLLLK-DIALIDPTDRKPTEIQWRYTEEGERVRVSVRTGRIIPKPVFQR--KDGIVPQQWKDGPKDTSPEDTLQKTYTPSLKTLEEEVMEKMNIQENRRPRKSYWY 216
[Close]
BLAST of Ribosomal protein L24 vs. UniProt/SwissProt
Match: sp|Q9CQ06|RM24_MOUSE (39S ribosomal protein L24, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl24 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 5.145e-30
Identity = 74/220 (33.64%), Postives = 117/220 (53.18%), Query Frame = 2 
Query:  161 SEKRSYPLWEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNC----IIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            S+  S P + Y    P ++A++  + P+            R+    ++ + + ++  F GD V++L G D GK G +  V++ R+ V+++ LN     I     ++  ++  E PL + H+V L+DP+D KP E++WR+   G  VRVS R+ RIIP P   +A   G +P   T GPKDT     LE TY P L+T  ED+ E   IQ+ RR  + +WY
Sbjct:   11 SKATSSPFYRYGMSRPGSIADKRKNPPW-----------SRRRPVVVEPISDEDWHLFCGDMVEILEGKDAGKQGKVVQVVRQRNWVVLEGLNTHYRYIGRTKDHRGTMIASEAPL-LHHQVKLVDPVDRKPTEIQWRFTEAGERVRVSTRSGRIIPKPEFPRA--DGIVPETWTDGPKDTSVEDALERTYVPRLKTLEEDVMEAMGIQETRRFKKVYWY 216
[Close]
BLAST of Ribosomal protein L24 vs. UniProt/SwissProt
Match: sp|Q3SYS0|RM24_BOVIN (39S ribosomal protein L24, mitochondrial OS=Bos taurus OX=9913 GN=MRPL24 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.636e-29
Identity = 73/181 (40.33%), Postives = 104/181 (57.46%), Query Frame = 2 
Query:  281 RKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNCIIYKDPNQNV-----IVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            R+ +  ++ + E ++  F GDRV++L G D GK G +  VI+ R+ V+V+ LN   Y+   + V     +V  E PL + ++V L+DPMD KP EVEWR+   G  VRVS R+ RIIP P   +A   G +P     GPKDT     LE TY P L+T  E++ E   IQ+ RR  + +WY
Sbjct:   40 RRRRVAVEPIPEEDWHLFCGDRVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTH-YRYVGKTVDFRGTMVPSEAPL-LHNQVKLVDPMDRKPTEVEWRFTEAGERVRVSTRSGRIIPKPDVPRA--DGIVPETWIDGPKDTSVEDALEKTYVPRLKTLEEEVMEAMGIQETRRHKKVYWY 216
[Close]
BLAST of Ribosomal protein L24 vs. UniProt/SwissProt
Match: sp|Q66H47|RM24_RAT (39S ribosomal protein L24, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl24 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.465e-28
Identity = 72/214 (33.64%), Postives = 114/214 (53.27%), Query Frame = 2 
Query:  179 PLWEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNC----IIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            P + Y    P ++A++  + P+            R+    ++ + + ++  F GD V++L G D GK G +  V++ R+ V+++ LN     I     ++  ++  E PL + H+V L+DP+D KP E++WR+   G  VRVS R+ RIIP P   +A   G +P   T GPKDT     LE TY P L+T  ED+ E   IQ+ RR  + +WY
Sbjct:   17 PHYRYGMSRPGSIADKRKNPPW-----------SRRRPVVVEPISDEDWHLFCGDMVEILEGKDAGKQGKVVQVVRQRNWVVLEGLNTHYRYIGRTKDHRGTMIPSEAPL-LHHQVKLVDPVDRKPTEIQWRFTEAGERVRVSTRSGRIIPKPEFPRA--DGIVPETWTDGPKDTSVEDALERTYVPRLKTLEEDVMEAMGIQETRRFKKIYWY 216
[Close]
BLAST of Ribosomal protein L24 vs. TrEMBL
Match: A0A1S8X0Z4 (Ribosomal protein L24 (Fragment) OS=Opisthorchis viverrini OX=6198 GN=X801_03740 PE=4 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.568e-58
Identity = 117/263 (44.49%), Postives = 163/263 (61.98%), Query Frame = 2 
Query:   35 FKYWPRYVARVLNVKAVYRGPYMDWKIEAKYE-DSPKQKDYEQSEKRSYPLWEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNCIIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPV----LRTFAEDIFEKHQIQDNRRRAETFWY 808
            F YWPRYVAR+L  +AVYR   + WK++ +   + P +K  E  E    P+W +SE  PWN+ANR+S FPYPD  W +V  DG+K +  LK +   E   FKGDRV++LVGPDKGK+G++SSV+K R +VIVD LN  +      + I ++ELPL +  E++L+DP+D KPC+  WRYD  GN VRVS +T RIIP P++A+ LD    P     GPKDT  + +   T+ P       +F ED+  +  +   ++   TFWY
Sbjct:  294 FSYWPRYVARLLRFRAVYRKELLGWKLQTEQPFERPDKKPNEYREDAYLPIWRFSEAPPWNIANRISEFPYPDTDWCVVLPDGKKVRKTLKPMLPEEQLIFKGDRVKILVGPDKGKVGLVSSVLKMRRMVIVDGLNYRLSAVTADD-IRREELPLCLDTEIALVDPVDGKPCQPSWRYDDKGNRVRVSLKTGRIIPLPMSARILDDLTDPKAAIRGPKDTPASVVTRVTFNPANDSSKISFEEDLSVQFGLDTTKKPFPTFWY 555
[Close]
BLAST of Ribosomal protein L24 vs. TrEMBL
Match: A0A4S2LWG4 (KOW domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_005565 PE=4 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.585e-57
Identity = 114/263 (43.35%), Postives = 160/263 (60.84%), Query Frame = 2 
Query:   35 FKYWPRYVARVLNVKAVYRGPYMDWKIEAKYE-DSPKQKDYEQSEKRSYPLWEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNCIIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLR----TFAEDIFEKHQIQDNRRRAETFWY 808
            F YWPRYVAR+L  +AVYR   + WK + +   + P +K  E  E    P+W +SE  PWN+ANR+S FPY D  W +V  DG+K +  LK +   E   FKGDRV++LVGPDKGK+GI+SSV+K R +VI+D LN  +      + I ++ELPL +  E++L+DP+D +PC   WRYD  G+ VRVS +T RIIP P++A+ LD    P     GPKDT  + +   T+ P       +F ED+  +  +   ++   TFWY
Sbjct:   31 FSYWPRYVARLLRFRAVYRKELLGWKFQTEQPFERPDKKPNEYREDAYLPVWRFSEAPPWNIANRISEFPYSDTDWCVVLPDGKKVRKTLKPMLPEEQLIFKGDRVKILVGPDKGKVGIVSSVLKMRRMVIIDGLNYRLSAV-TADDIRREELPLCLDTEIALVDPVDGEPCRPSWRYDDKGDRVRVSLKTGRIIPLPMSARILDDLTDPKAAIRGPKDTPASVVTRVTFNPAGDSSNISFEEDLSVQFGLDTTKKPFPTFWY 292
[Close]
BLAST of Ribosomal protein L24 vs. TrEMBL
Match: A0A074YWK3 (Uncharacterized protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=T265_15643 PE=4 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.923e-57
Identity = 117/263 (44.49%), Postives = 163/263 (61.98%), Query Frame = 2 
Query:   35 FKYWPRYVARVLNVKAVYRGPYMDWKIEAKYE-DSPKQKDYEQSEKRSYPLWEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNCIIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPV----LRTFAEDIFEKHQIQDNRRRAETFWY 808
            F YWPRYVAR+L  +AVYR   + WK++ +   + P +K  E  E    P+W +SE  PWN+ANR+S FPYPD  W +V  DG+K +  LK +   E   FKGDRV++LVGPDKGK+G++SSV+K R +VIVD LN  +      + I ++ELPL +  E++L+DP+D KPC+  WRYD  GN VRVS +T RIIP P++A+ LD    P     GPKDT  + +   T+ P       +F ED+  +  +   ++   TFWY
Sbjct:  484 FSYWPRYVARLLRFRAVYRKELLGWKLQTEQPFERPDKKPNEYREDAYLPIWRFSEAPPWNIANRISEFPYPDTDWCVVLPDGKKVRKTLKPMLPEEQLIFKGDRVKILVGPDKGKVGLVSSVLKMRRMVIVDGLNYRLSAVTADD-IRREELPLCLDTEIALVDPVDGKPCQPSWRYDDKGNRVRVSLKTGRIIPLPMSARILDDLTDPKAAIRGPKDTPASVVTRVTFNPANDSSKISFEEDLSVQFGLDTTKKPFPTFWY 745
[Close]
BLAST of Ribosomal protein L24 vs. TrEMBL
Match: A0A5J4NXK3 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0012776 PE=4 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.567e-56
Identity = 116/264 (43.94%), Postives = 165/264 (62.50%), Query Frame = 2 
Query:   35 FKYWPRYVARVLNVKAVYRGPYMDWKIEAKYE-DSPKQKDYEQSEKRSYPLWEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNCIIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLR----TFAEDIFEKHQI-QDNRRRAETFWY 808
            F YWPRYVAR+L  +AVYR   + W+ + ++  + P +K  E  E+   P+W +SE+ PWN+ANRLS FPYPD+ W +V  DG+K   KL  L   +   FKGDRVQ+L+GPDKGKIGI+S+V+K R +V+VD LN  I + P  + + ++E+PL +  EV+L+DP DN+PC   WRY+  G  VRVS RT  +IP P+ A+ LD    P      PKDT  + + + T+ P       TF ED+  ++ + QD  +   T+WY
Sbjct:  394 FSYWPRYVARLLRFRAVYRKELLGWRFQTEHMFERPDKKPNEYREESYLPVWRFSEEAPWNIANRLSEFPYPDVTWCVVEPDGKKVAKKLPPLLPEDQTIFKGDRVQILIGPDKGKIGIVSTVLKMRRMVLVDGLNYRITQ-PLPDTLRREEMPLCMHTEVALVDPADNQPCSAVWRYNERGERVRVSVRTGHMIPLPIGARQLDDLTDPKTAVRQPKDTPESVLTQITFTPADSPGPVTFEEDLSAQYGLPQDKTKPFPTYWY 656
[Close]
BLAST of Ribosomal protein L24 vs. TrEMBL
Match: G4V7Y5 (Putative mitochondrial ribosomal protein L24 OS=Schistosoma mansoni OX=6183 GN=Smp_035410 PE=4 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.049e-55
Identity = 106/263 (40.30%), Postives = 156/263 (59.32%), Query Frame = 2 
Query:   26 MKSFKYWPRYVARVLNVKAVYRGPYMDWKIEAKYE-DSPKQKDYEQSEKRSYPLWEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNCIIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLR-TFAEDIFEKHQIQDNRRRAETFWY 808
            ++ F YWPRYVAR++  + VYR   + W  E  +    P     E+ E++  P+W +SEK PWN+ANRLS FPYP+  W +++ DG K   KL+ +   +   FKGDRVQ+L GPDKG+IGI+SSV+K R LV VD LN  +      + + + E PL I  +V+L+DP +N+PC+  WRY  +GN VRVS +T  +IP P AA+ LD    P   T   KDT    +   +       +F + +F++ ++ D  ++  T+WY
Sbjct:   26 LQKFNYWPRYVARLIRFRPVYRKELLGWSFETDHRFQQPDSLPNEKREEKFLPVWNFSEKPPWNIANRLSEFPYPNTTWCVIHPDGHKEARKLRPMLPEDQLIFKGDRVQILCGPDKGRIGIVSSVVKIRRLVYVDGLNYRLTAFRKYDSLKRSEDPLDIDTQVALVDPSNNEPCKCSWRYTEEGNRVRVSLQTGHVIPLPAAARYLDDLTDPKTATVSSKDTCEPAVCNVSLNSTSAVSFEQSLFKELKLNDCLKQTPTYWY 288
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Cavefish
Match: mrpl24 (mitochondrial ribosomal protein L24 [Source:NCBI gene;Acc:103046072])

HSP 1 Score: 115.161 bits (287), Expect = 1.055e-30
Identity = 68/171 (39.77%), Postives = 100/171 (58.48%), Query Frame = 2 
Query:  308 LDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNC----IIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            + + ++  F+GD V++L G DKGK G ++ V + R+ VIV+ LN     +      +   +  E PL + + +SLIDP D KP E +WR+  +G  VRVS RT R+IP PL  +    G IP     GPKDT     L+ TY P+L+T  E++ EK  IQ+NRR+  ++WY
Sbjct:   49 IAKEDWSVFRGDVVEILSGKDKGKQGKVTQVFRHRNWVIVEGLNTHYRYVGKAGDYRGTYIANEAPL-LLNNISLIDPTDRKPTETQWRFTEEGERVRVSVRTGRVIPKPLFQRK--DGIIPEQWKDGPKDTSSKDTLQKTYTPILKTLEEEVMEKMNIQENRRQKRSYWY 216
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Sea Lamprey
Match: mrpl24 (mitochondrial ribosomal protein L24 [Source:NCBI gene;Acc:436674])

HSP 1 Score: 96.6709 bits (239), Expect = 4.002e-25
Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 2 
Query:  344 RVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNC---IIYKDPN-QNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            +V++L G D GK G +  +IK R+ V++  LN       + P    + V  E PL + ++V+L+DP D K   VEWR+  +G  VRVS+RT RIIP P   +  D G IP     GPKDT     L +TY P L+TF E+I +   I + RR  ++FWY
Sbjct:    1 QVEILKGKDAGKQGKVVQIIKERNWVVIQGLNTHYRYTGRTPTFSGMYVASEAPLLV-NDVALVDPTDRKAANVEWRFTDEGERVRVSERTGRIIPLPPYQR--DDGIIPEQWKDGPKDTSVENALASTYSPSLKTFEEEIMDAMGIVEERRPRKSFWY 156
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Nematostella
Match: EDO47740 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RLR8])

HSP 1 Score: 65.4698 bits (158), Expect = 6.180e-13
Identity = 55/156 (35.26%), Postives = 83/156 (53.21%), Query Frame = 2 
Query:  317 NEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNCI--IYK--DPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQI 772
            +E+   +GD V +L G DKGK G+++ VI++++ + V  +N     +K  D  Q      E PL  K +V+LIDP D KP +V +RY   G  VRVS+RT RIIP P   +     +  + +  G  DT+ +     +Y P L  F E+I +   I
Sbjct:   35 DEWKVVRGDTVVILAGKDKGKTGLVTDVIRSKNHLYVKGMNTHQRYFKPYDDFQGGFFPSEAPLHYK-DVALIDPSDKKPTDVAYRYTEKGERVRVSERTGRIIPKPTWERR--DWKTRSAVKDGDHDTLASAASRNSYIPSLLHFHEEIMKAMNI 187
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Medaka
Match: mrpl24 (mitochondrial ribosomal protein L24 [Source:NCBI gene;Acc:101161028])

HSP 1 Score: 73.559 bits (179), Expect = 1.283e-15
Identity = 53/152 (34.87%), Postives = 82/152 (53.95%), Query Frame = 2 
Query:  185 WEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNC---IIYKDPN-QNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPL 628
            + Y    PW +A +  + P             R+ K  ++ L+  ++   +GD V++L G DKGK G +  V + R+ VI++ LN     + K P+ +   V  E PL +  +V+L+DP D KP +VEW+Y  +G  VRVS RT RIIP P+
Sbjct:   19 YRYGTNRPWTVAAKRLNPP-----------GKRRRKVFVEPLEAEDWSVVRGDLVEILAGKDKGKHGKVIQVFRRRNWVILEGLNTHFRYVGKSPDYRGTYVASEAPL-LLGDVALVDPSDRKPTQVEWKYTEEGERVRVSVRTGRIIPKPV 158
[Close]
BLAST of Ribosomal protein L24 vs. Planmine SMEST
Match: SMESG000014001.1 (SMESG000014001.1)

HSP 1 Score: 506.523 bits (1303), Expect = 0.000e+0
Identity = 259/261 (99.23%), Postives = 260/261 (99.62%), Query Frame = 2 
Query:   26 MKSFKYWPRYVARVLNVKAVYRGPYMDWKIEAKYEDSPKQKDYEQSEKRSYPLWEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNCIIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            MKSFKYWPRYVARVLNVKAVYRGPYMDWKIEAKYEDSPKQKDYEQSEKRSYPLWEYSEKYPWNMANRLSSFPYPD+FWTIVYADGRKSKSKLKFLDENEF FFKGDRVQVLVGPDKGKIGIISSVIKTRDLVIVDNLNCIIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY
Sbjct:    1 MKSFKYWPRYVARVLNVKAVYRGPYMDWKIEAKYEDSPKQKDYEQSEKRSYPLWEYSEKYPWNMANRLSSFPYPDMFWTIVYADGRKSKSKLKFLDENEFEFFKGDRVQVLVGPDKGKIGIISSVIKTRDLVIVDNLNCIIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 261
[Close]
BLAST of Ribosomal protein L24 vs. Planmine SMEST
Match: SMESG000014001.1 (SMESG000014001.1)

HSP 1 Score: 455.677 bits (1171), Expect = 2.663e-164
Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 2 
Query:  101 MDWKIEAKYEDSPKQKDYEQSEKRSYPLWEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEFPFFKGDRVQVLVGPDXXXXXXXXXXXXTRDLVIVDNLNCIIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 808
            MDWKIEAKYEDSPKQKDYEQSEKRSYPLWEYSEKYPWNMANRLSSFPYPD+FWTIVYADGRKSKSKLKFLDENEF FFKGDRVQVLVGPDKGKIGIISSVIKTRDLVIVDNLNCIIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY
Sbjct:    1 MDWKIEAKYEDSPKQKDYEQSEKRSYPLWEYSEKYPWNMANRLSSFPYPDMFWTIVYADGRKSKSKLKFLDENEFEFFKGDRVQVLVGPDKGKIGIISSVIKTRDLVIVDNLNCIIYKDPNQNVIVKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYPLAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQDNRRRAETFWY 236
The following BLAST results are available for this feature:
BLAST of Ribosomal protein L24 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
MRPL245.550e-2638.60mitochondrial ribosomal protein L24 [Source:HGNC S... [more]
MRPL245.550e-2638.60mitochondrial ribosomal protein L24 [Source:HGNC S... [more]
MRPL241.389e-1340.91mitochondrial ribosomal protein L24 [Source:HGNC S... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrpl-249.945e-1932.73Probable 39S ribosomal protein L24, mitochondrial ... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mRpL242.330e-2638.92gene:FBgn0031651 transcript:FBtr0079058[more]
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BLAST of Ribosomal protein L24 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrpl243.262e-3236.32mitochondrial ribosomal protein L24 [Source:NCBI g... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
aak13.075e-3039.04AP2 associated kinase 1 [Source:Xenbase;Acc:XB-GEN... [more]
aak15.275e-2637.64AP2 associated kinase 1 [Source:Xenbase;Acc:XB-GEN... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Mrpl247.356e-3133.64mitochondrial ribosomal protein L24 [Source:MGI Sy... [more]
Mrpl247.356e-3133.64mitochondrial ribosomal protein L24 [Source:MGI Sy... [more]
Mrpl247.356e-3133.64mitochondrial ribosomal protein L24 [Source:MGI Sy... [more]
Mrpl247.356e-3133.64mitochondrial ribosomal protein L24 [Source:MGI Sy... [more]
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BLAST of Ribosomal protein L24 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q6GPM4|RM24_XENLA1.970e-3443.33Probable 39S ribosomal protein L24, mitochondrial ... [more]
sp|Q6DH02|RM24_DANRE2.462e-3136.32Probable 39S ribosomal protein L24, mitochondrial ... [more]
sp|Q9CQ06|RM24_MOUSE5.145e-3033.6439S ribosomal protein L24, mitochondrial OS=Mus mu... [more]
sp|Q3SYS0|RM24_BOVIN3.636e-2940.3339S ribosomal protein L24, mitochondrial OS=Bos ta... [more]
sp|Q66H47|RM24_RAT1.465e-2833.6439S ribosomal protein L24, mitochondrial OS=Rattus... [more]
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BLAST of Ribosomal protein L24 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1S8X0Z42.568e-5844.49Ribosomal protein L24 (Fragment) OS=Opisthorchis v... [more]
A0A4S2LWG41.585e-5743.35KOW domain-containing protein OS=Opisthorchis feli... [more]
A0A074YWK35.923e-5744.49Uncharacterized protein (Fragment) OS=Opisthorchis... [more]
A0A5J4NXK31.567e-5643.94Uncharacterized protein OS=Paragonimus westermani ... [more]
G4V7Y52.049e-5540.30Putative mitochondrial ribosomal protein L24 OS=Sc... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrpl241.055e-3039.77mitochondrial ribosomal protein L24 [Source:NCBI g... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrpl244.002e-2540.25mitochondrial ribosomal protein L24 [Source:NCBI g... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ribosomal protein L24 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO477406.180e-1335.26Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrpl241.283e-1534.87mitochondrial ribosomal protein L24 [Source:NCBI g... [more]
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BLAST of Ribosomal protein L24 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000014001.10.000e+099.23SMESG000014001.1[more]
SMESG000014001.12.663e-16499.15SMESG000014001.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30034290 ID=SMED30034290|Name=Ribosomal protein L24|organism=Schmidtea mediterranea sexual|type=transcript|length=846bp
ATCTATATAAATCTTATATGTAACAATGAAATCCTTTAAATATTGGCCAA
GATATGTTGCTCGGGTATTAAATGTAAAGGCTGTATATAGAGGTCCTTAT
ATGGATTGGAAGATTGAAGCAAAGTATGAAGATTCGCCTAAACAAAAAGA
TTATGAACAAAGTGAAAAACGTTCATATCCTTTATGGGAATATTCGGAAA
AATATCCTTGGAATATGGCTAACAGACTTTCTTCATTTCCTTATCCAGAT
ATATTTTGGACAATAGTGTATGCTGATGGAAGAAAAAGCAAATCGAAATT
GAAATTCCTTGATGAAAATGAATTTCCATTTTTTAAAGGTGATCGTGTTC
AAGTTTTAGTTGGTCCAGACAAAGGAAAAATTGGTATTATATCCTCGGTT
ATTAAAACGAGAGATTTAGTGATCGTTGATAACCTTAACTGTATTATTTA
TAAAGATCCTAATCAAAATGTAATAGTAAAGAAAGAATTGCCTCTCCGTA
TTAAACATGAGGTATCATTGATTGATCCGATGGATAATAAGCCATGTGAA
GTCGAATGGCGTTATGATAGCGACGGTAACCACGTTCGTGTTAGCAAACG
GACTGAGCGAATTATTCCTTATCCGTTGGCAGCACAAGCATTGGATAGCG
GTGAAATCCCGGCTCTCATGACCAGCGGACCAAAGGACACAATTCCGGCA
AAGATATTGGAGGCCACGTATAAACCGGTTTTGAGGACATTTGCAGAGGA
CATATTCGAGAAGCACCAAATCCAGGATAATAGGAGAAGAGCTGAAACGT
TTTGGTATTGATTTAATAAATGTGCTGTTTTACTTTTAAAAAAAAA
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protein sequence of SMED30034290-orf-1

>SMED30034290-orf-1 ID=SMED30034290-orf-1|Name=SMED30034290-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=262bp
MKSFKYWPRYVARVLNVKAVYRGPYMDWKIEAKYEDSPKQKDYEQSEKRS
YPLWEYSEKYPWNMANRLSSFPYPDIFWTIVYADGRKSKSKLKFLDENEF
PFFKGDRVQVLVGPDKGKIGIISSVIKTRDLVIVDNLNCIIYKDPNQNVI
VKKELPLRIKHEVSLIDPMDNKPCEVEWRYDSDGNHVRVSKRTERIIPYP
LAAQALDSGEIPALMTSGPKDTIPAKILEATYKPVLRTFAEDIFEKHQIQ
DNRRRAETFWY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0005509calcium ion binding
GO:0003735structural constituent of ribosome
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000101muscle cell
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0003001lateral region of the whole animal
Vocabulary: INTERPRO
TermDefinition
IPR041988KOW_RPL26/RPL24
IPR005824KOW
IPR014722Rib_L2_dom2
IPR003256Ribosomal_L24
IPR005825Ribosomal_L24/26_CS
IPR008991Translation_prot_SH3-like_sf
Vocabulary: biological process
TermDefinition
GO:0006412translation
Vocabulary: cellular component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005824KOWSMARTSM00739kow_9coord: 103..130
e-value: 2.6E-5
score: 33.7
IPR005824KOWPFAMPF00467KOWcoord: 106..137
e-value: 2.5E-6
score: 27.2
IPR003256Ribosomal protein L24PFAMPF17136ribosomal_L24coord: 149..199
e-value: 4.1E-11
score: 43.1
IPR003256Ribosomal protein L24TIGRFAMTIGR01079TIGR01079coord: 106..199
e-value: 1.8E-15
score: 55.2
IPR003256Ribosomal protein L24PANTHERPTHR12903MITOCHONDRIAL RIBOSOMAL PROTEIN L24coord: 91..259
IPR014722Ribosomal protein L2, domain 2GENE3DG3DSA:2.30.30.30coord: 95..197
e-value: 3.9E-20
score: 74.0
NoneNo IPR availablePANTHERPTHR12903:SF039S RIBOSOMAL PROTEIN L24, MITOCHONDRIALcoord: 91..259
IPR005825Ribosomal protein L24/L26, conserved sitePROSITEPS01108RIBOSOMAL_L24coord: 107..124
IPR041988Ribosomal Protein L26/L24, KOW domainCDDcd06089KOW_RPL26coord: 107..161
e-value: 1.34275E-13
score: 62.147
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILYSSF50104Translation proteins SH3-like domaincoord: 99..197