SMED30034234

Overview
NameSMED30034234
Smed IDSMED30034234
Length (bp)3927
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30034234 (SMED30034234) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30034234 (SMED30034234) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30034234 (SMED30034234) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30034234 (SMED30034234) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30034234

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30034234 SmedASXL_013789SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
parenchymal cellSMED30034234SMESG000074174.1 SMESG000074171.1 dd_Smed_v4_1725_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30034234SMESG000074171.1 SMESG000074174.1 SMESG000074173.1 SMESG000074172.1 Contig17456uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30034234SMESG000074171.1 SMESG000074174.1 SMESG000074173.1 SMESG000074172.1 Contig17456newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30034234 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000340:83591..87358 -18076
Homology
[Close]
BLAST of SMED30034234 vs. TrEMBL
Match: A0A183R944 (Uncharacterized protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.044e-16
Identity = 78/282 (27.66%), Postives = 130/282 (46.10%), Query Frame = -1 
Query: 3079 YAAAASELDCSY-ENGFCKWSNDQNNWKLNWKQTSLVDIGFMEMGNYENGGACLKSNENIDEKLLTARLWGPEILKNVKLSCLSFQYRI----SGDSLTKLTLMRREMGLVLEISILRYFMSKIINISWH*RALFSNYTTHFTV**NNHLAISELDCSFDSNLCKWINDGNNWLINWVI-----SELSENP--STFQR-GICLS---TSSNYKLVDGKPLTARLWGPVIFSDMKLKCITFTYKVQSANTA----------------------KLTIMRREMG 3810
            Y +  S LDC++ ++  CKWSND NNW +NW +  L D     + +  +G  CL + ++I    L+ARL+   +       CL   Y I       S+    ++R  +  + ++S+LR    ++I       +L  +Y++   +          LDC F  ++C W ND NNW +NW +      + S+N   ST +R  ICLS    S+N++      +TARL+ P+I    +  CI   Y +Q  + +                      KL+++RR+MG
Sbjct:  297 YQSYQSLLDCNFTDSSMCKWSNDPNNWPVNW-ELELADKSSTSVNHESSGLICLYATKSIQPMNLSARLFSSLMRSTFNNICLKLFYTIVISSRTSSMDSSDILRDGISAMPKLSLLRPI--QLI------ESL--DYSSEMNM---------NLDCEFKESMCNWGNDQNNWPVNWKLMMIDSEDFSKNSEMSTVERNSICLSFHGKSNNHQ--SDYDITARLFSPIISIMKQPSCIQLIYNIQYVSGSLRDDISLSGRELNMYSVGDKLPKLSLLRRQMG 556

HSP 2 Score: 32.3426 bits (72), Expect = 1.044e-16
Identity = 23/71 (32.39%), Postives = 30/71 (42.25%), Query Frame = -3 
Query: 2771 CSFDNG---FCKWNNDPNNWKIHWKLTSL-----NSIGFVNSEQENSGACLKVSEDEIEYSLAARLYGPEV 2959
            C FD+    FC W  DP N K HWK   +     N I  +      +    K+  D+   SL ARL+   V
Sbjct:  573 CDFDDAKMEFCLWQGDPRNDKAHWKHEYMTTDLHNGIICLQPRNIQTYRLRKIYSDQ-RNSLTARLWSETV 642

HSP 3 Score: 21.1718 bits (43), Expect = 1.044e-16
Identity = 7/11 (63.64%), Postives = 9/11 (81.82%), Query Frame = -1 
Query: 2722 LGCISFQYRIE 2754
            L CI FQY+I+
Sbjct:  666 LRCIQFQYKIQ 676

HSP 4 Score: 70.4774 bits (171), Expect = 2.922e-8
Identity = 82/300 (27.33%), Postives = 111/300 (37.00%), Query Frame = -1 
Query: 3064 LDCSYENGFCKWSNDQNNWKLNWKQTSLVDIGFM---EMGNYENGGACL----KSNENIDEKLLTARLWGPEILKNVKLSCLSFQYRIS----------------------GDSLTKLTLMRREMGLVLEISILRYFMSKIINISWH*RALFSNYTTHFTV**NNHLAISELDCSFDS---NLCKWINDGNNWLINWVISELSENPSTFQRGI-CLSTSS--NYKLV-----DGKPLTARLWG----PVIFSDM--------------KLKCITFTYKVQSANTAKLTIMRREMGLVFII 3789
            LDC ++   C W NDQNNW +NWK   +    F    EM   E    CL    KSN +  +  +TARL+ P I    + SC+   Y I                       GD L KL+L+RR+MG   E            N+    R   +N                 L C FD      C W  D  N   +W    ++   +    GI CL   +   Y+L          LTARLW     PVI S+                L+CI F YK+Q  ++        ++GL  +I
Sbjct:  431 LDCEFKESMCNWGNDQNNWPVNWKLMMIDSEDFSKNSEMSTVERNSICLSFHGKSNNHQSDYDITARLFSPIISIMKQPSCIQLIYNIQYVSGSLRDDISLSGRELNMYSVGDKLPKLSLLRRQMGQEYE------------NVP---RPNSNNL----------------LYCDFDDAKMEFCLWQGDPRNDKAHWKHEYMT---TDLHNGIICLQPRNIQTYRLRKIYSDQRNSLTARLWSETVEPVITSNENSDYMEYSLNNPQNSLRCIQFQYKIQLHDSNVDPPTNIQVGLCNLI 696

HSP 5 Score: 70.4774 bits (171), Expect = 3.127e-8
Identity = 77/269 (28.62%), Postives = 119/269 (44.24%), Query Frame = -1 
Query: 3127 YAAAASELDCSYEN---GFCKWSNDQNNWKLNWKQTSLVDIGFMEMGNYENGGACLKSNENIDEKL---LTARLWGPEILKNVKLS------CLSFQYRIS---------GDSLTKLT-LMRREMGLVLEI-SILRYFMSKII------------NISWH*RALFSNYTTHFTV**NNHLAISELDCSF-DSNLCKWINDGNNWLINWVISELSENPSTFQRG-----ICLSTSSNYKLVDGKPLTARLWGPVIFSDMKLKCITFTYKV 3810
            Y      L C ++N     C W +D N+W+  WK          ++G+        K + N D      LT RLW  ++++  KLS      CLS  Y +          G S  KL+ LMRRE   VL + S L   +S II            ++      LF+NY ++ ++          LDC+F DS++CKW ND NNW +NW + EL++  ST         ICL  + + + ++   L+ARL+  ++ S     C+   Y +
Sbjct:  131 YLLMDQSLSCDFDNILVPLCNWQHDLNDWRGRWKHWISPTNNHNQLGDKHLCLELNKEDPNDDSAEAIDLTVRLWS-QLIRTKKLSEQQKPKCLSLSYNLDHGLLRNPTDGQSQPKLSVLMRREGCSVLRLKSFLISALSLIIPVESIIDPSSTYSVPSDQSKLFNNYQSYQSL----------LDCNFTDSSMCKWSNDPNNWPVNWEL-ELADKSSTSVNHESSGLICLYATKSIQPMN---LSARLFSSLMRSTFNNICLKLFYTI 384
[Close]
BLAST of SMED30034234 vs. TrEMBL
Match: G7YQK8 (Uncharacterized protein (Fragment) OS=Clonorchis sinensis OX=79923 GN=CLF_107438 PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.786e-16
Identity = 74/271 (27.31%), Postives = 114/271 (42.07%), Query Frame = -1 
Query: 3076 ELDCSYENGFCKWSNDQNNWKLNWKQTSLVDIGF-MEMGNYENGGACLKSNENIDEKLLTARLWGPEILKNVKLSCLSFQYRI-------SG--DSLTKLTLMRREMGLVLEISILRYFMSKIINISWH*RALFSNYTTHFTV**NNHLAISELDCSFDSN---LCKWINDGNNWLINWVISELSENPSTFQRGICLSTSSNYKLVDG-KP-----LTARLWGPVIFSDMKL-------------KCITFTYKVQSANTAKLTIMRREMGL 3792
             LDC++ + FC+WSNDQNNW +NW+   L  + + + +GN      CLK      +  L+ARL+GP +  +    CL   Y I       SG   +  KL LMRR+MG  L +  +   +S +                              L C+F+S+    C W  D  +  + W I +++ N        CLS +   +L  G +P     LT RLW   IF++                +CI  +Y +Q+A    + I +   GL
Sbjct:  303 PLDCNFTDSFCRWSNDQNNWPINWE---LRPVDWKISIGNE----LCLKVPSIPQKADLSARLFGPLLSASDNTRCLRLAYVIHPHPSFSSGLDRAGPKLALMRRQMGWGLPVEDISGDLSAL------------------------------LHCNFESSEWKFCHWTTDPRDTGVLWSILDVNNN-----GAACLSPAPFPRLRFGSQPSGSLALTGRLWSQTIFANFPASPEMLSGHGIGAPQCIQLSYYLQAAKDTPIMIDKSGTGL 531

HSP 2 Score: 35.8094 bits (81), Expect = 2.786e-16
Identity = 20/71 (28.17%), Postives = 37/71 (52.11%), Query Frame = -3 
Query: 2759 IDCSFDNG-FCKWNNDPNNWKIHWKLTSL-NSIGFVNSEQENSGACLKVSEDEIEYSLAARLYGPEVLKKN 2965
            ++C+F+NG FC W +DP +    W++  L +  GF    Q  +G     + D ++   +ARL+   +  K+
Sbjct:  546 VNCTFENGKFCGWKDDPRDVIASWQVVRLPDPPGFAACLQA-TGVWDSSATDAVQAEGSARLWSGHISPKS 615
[Close]
BLAST of SMED30034234 vs. TrEMBL
Match: A0A183WF71 (Uncharacterized protein OS=Trichobilharzia regenti OX=157069 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.636e-16
Identity = 70/278 (25.18%), Postives = 124/278 (44.60%), Query Frame = -1 
Query: 3079 LDCSYENGF---CKWSNDQNNWKLNWK-------QTSLVDIGFMEMGNYENGGACLK--------SNENIDEKLLTARLWGP-----EILKNVKLSCLSFQYRISGDSLTKLTLMRREMGLVLEISILRYFMSKIINISWH*RALFSNYTTHFTV**NNHLAISELDCSF-DSNLCKWINDGNNWLINWVISELSE-NPSTFQR---GICLSTSSNYKLVDGKPLTARLWGPVIFSDMKLKCITFTYKVQ-------------SANTAKLTIMRREMG 3789
            L C ++N     C W +D N+W+  WK            +    ++ +  +   CL+         +E+ +   LT RLW       ++ + VK  CLS  Y++             + G  L+ S+   F+  +IN+S     L  +  TH      +    S LDC+F DS++CKW ND NNW INW +   S+ +P+  +     +CL ++   + +D   +++RL+ P++ +   + C+   YK+              S  + KL ++RR+MG
Sbjct:  863 LSCDFDNSLMPLCNWQHDLNDWRGRWKLWKSPHDNNDNNNNSPYDIRSINDRHLCLQLDKEDSNDDDESTESMSLTVRLWSQLIRIKKLSEKVKPKCLSLSYQL-------------DTGSSLQKSVDHKFL--LINLSTA-ANLGQSMVTH------SRFLPSTLDCNFTDSSMCKWSNDQNNWPINWELDMESDLSPAIHEENSGSVCLYSTELSQQMD---ISSRLFSPLMSAASNVFCLKLVYKITMSRHPLSTSADQISDTSPKLALLRRQMG 1115

HSP 2 Score: 41.9726 bits (97), Expect = 4.636e-16
Identity = 30/119 (25.21%), Postives = 52/119 (43.70%), Query Frame = -3 
Query: 2639 DIDCSFDNGFCKWNNDPNNWKIHWKLTSL----NSIGFVNSEQENSGACLKVSE-----DEIEYSLAARLYGPEVLKKNEIRMYFVSVSN*RESVC*IDINAKRNGVSSRKFKILRILF 2968
            D++C F    C W+ND NNW  +WKL  +    +S   +   ++ +  CL + +      +  Y + ARL+ P V    + R     + +   S    D+N ++N      F  L+  F
Sbjct: 1127 DLNCEFRESTCNWSNDQNNWPANWKLIKIELEDSSKNDLVVTEKKTSICLTIGKLSAPHHQYNYDITARLFSPIVSVMKQPRFSAFDLEDQENS----DLNERQNHYLDCDFDDLKSEF 1241

HSP 3 Score: 76.2554 bits (186), Expect = 5.335e-10
Identity = 60/233 (25.75%), Postives = 99/233 (42.49%), Query Frame = -1 
Query: 3172 ASELDCSY-ENGFCKWSNDQNNWKLNWKQTSLVDIGFMEMGNYENGGACLKSNENIDEKLLTARLWGPEILKNVKLSCLSFQYRIS-------------GDSLTKLTLMRREMGLVLEISILRYFMSKIINISWH*RALFSNYTTHFTV**NNHLAISELDCSFDSNLCKWINDGNNWLINWVISELSENPSTFQRGICLSTSSNYKLVDGK----------PLTARLWGPVI 3798
             S LDC++ ++  CKWSNDQNNW +NW+     D+    +    +G  CL S E   +  +++RL+ P +     + CL   Y+I+              D+  KL L+RR+MG  L+                         T+  ++         +L+C F  + C W ND NNW  NW + ++    S+    +     ++  L  GK           +TARL+ P++
Sbjct: 1003 PSTLDCNFTDSSMCKWSNDQNNWPINWELDMESDLS-PAIHEENSGSVCLYSTELSQQMDISSRLFSPLMSAASNVFCLKLVYKITMSRHPLSTSADQISDTSPKLALLRRQMGESLDD------------------------TSDLSM---------DLNCEFRESTCNWSNDQNNWPANWKLIKIELEDSSKNDLVVTEKKTSICLTIGKLSAPHHQYNYDITARLFSPIV 1201

HSP 4 Score: 51.2174 bits (121), Expect = 4.916e-6
Identity = 54/237 (22.78%), Postives = 82/237 (34.60%), Query Frame = -1 
Query: 3031 ENIDEKLLTARLWGPEILKNVKLSCLSFQYRISGDSLTKLTLMRREMGLVLEISILRYFMSKIINISWH*RALFSNYTTHFTV**NNHLAISELDCSFDSNLCKWINDGNNWLINWVI---SELSENPSTFQRGI-CLSTSSNYK------------------LVDGKPLTARLWGPVIFSDMKLKCITFTYKVQSA-----------NTAKLTIMRREMGLVFIIVVYITFLWCFL 3642
            + ID K + +RLW   I   + L C+ F Y I   S T + +                   K I +                             C+F+ NLC W+ND N W   W +   S+LS N       I C++     +                      KP  ARLW P I +  KL+C+ F Y++               +  L ++RR+ G+         F++CFL
Sbjct:  139 DRIDNKPIHSRLWSASIPAELGLKCMKFVYFIQLHSPTDIPV-------------------KPIYV-----------------------------CTFNGNLCGWMNDMNIWKYQWKLVTNSKLSTNGKQQPTSILCMNAKQAIQENWINSFSSSSLITSQSSSELNKPAQARLWSPPIQAVHKLRCLQFVYQIDVGMKHGDSTRHLKESPTLALLRRQEGV---------FIYCFL 318

HSP 5 Score: 31.187 bits (69), Expect = 4.916e-6
Identity = 22/75 (29.33%), Postives = 35/75 (46.67%), Query Frame = -3 
Query: 2741 NGFCKWNNDPNNW-KIHWKLTSLNSIGFVNSEQENSGA----CLKVSED-EIEYSLAARLYGPEVLKKNEIRMYF 2947
            N +C W  DPN+W +  WK+ +L  I   + +    G+    CL  S       +L +RL+ P V   +E  M +
Sbjct:  337 NEYCSWVVDPNDWGRFRWKMDNLPLINNNDKDGSRIGSRRAMCLHRSPTIRSSETLTSRLWSPSVGVVDESSMEY 411
[Close]
BLAST of SMED30034234 vs. TrEMBL
Match: A0A3P8LMT6 (Uncharacterized protein (Fragment) OS=Trichobilharzia regenti OX=157069 GN=TRE_LOCUS10774 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.870e-16
Identity = 70/278 (25.18%), Postives = 124/278 (44.60%), Query Frame = -1 
Query: 3079 LDCSYENGF---CKWSNDQNNWKLNWK-------QTSLVDIGFMEMGNYENGGACLK--------SNENIDEKLLTARLWGP-----EILKNVKLSCLSFQYRISGDSLTKLTLMRREMGLVLEISILRYFMSKIINISWH*RALFSNYTTHFTV**NNHLAISELDCSF-DSNLCKWINDGNNWLINWVISELSE-NPSTFQR---GICLSTSSNYKLVDGKPLTARLWGPVIFSDMKLKCITFTYKVQ-------------SANTAKLTIMRREMG 3789
            L C ++N     C W +D N+W+  WK            +    ++ +  +   CL+         +E+ +   LT RLW       ++ + VK  CLS  Y++             + G  L+ S+   F+  +IN+S     L  +  TH      +    S LDC+F DS++CKW ND NNW INW +   S+ +P+  +     +CL ++   + +D   +++RL+ P++ +   + C+   YK+              S  + KL ++RR+MG
Sbjct:  863 LSCDFDNSLMPLCNWQHDLNDWRGRWKLWKSPHDNNDNNNNSPYDIRSINDRHLCLQLDKEDSNDDDESTESMSLTVRLWSQLIRIKKLSEKVKPKCLSLSYQL-------------DTGSSLQKSVDHKFL--LINLSTA-ANLGQSMVTH------SRFLPSTLDCNFTDSSMCKWSNDQNNWPINWELDMESDLSPAIHEENSGSVCLYSTELSQQMD---ISSRLFSPLMSAASNVFCLKLVYKITMSRHPLSTSADQISDTSPKLALLRRQMG 1115

HSP 2 Score: 41.9726 bits (97), Expect = 4.870e-16
Identity = 30/119 (25.21%), Postives = 52/119 (43.70%), Query Frame = -3 
Query: 2639 DIDCSFDNGFCKWNNDPNNWKIHWKLTSL----NSIGFVNSEQENSGACLKVSE-----DEIEYSLAARLYGPEVLKKNEIRMYFVSVSN*RESVC*IDINAKRNGVSSRKFKILRILF 2968
            D++C F    C W+ND NNW  +WKL  +    +S   +   ++ +  CL + +      +  Y + ARL+ P V    + R     + +   S    D+N ++N      F  L+  F
Sbjct: 1127 DLNCEFRESTCNWSNDQNNWPANWKLIKIELEDSSKNDLVVTEKKTSICLTIGKLSAPHHQYNYDITARLFSPIVSVMKQPRFSAFDLEDQENS----DLNERQNHYLDCDFDDLKSEF 1241

HSP 3 Score: 76.2554 bits (186), Expect = 5.290e-10
Identity = 60/233 (25.75%), Postives = 99/233 (42.49%), Query Frame = -1 
Query: 3172 ASELDCSY-ENGFCKWSNDQNNWKLNWKQTSLVDIGFMEMGNYENGGACLKSNENIDEKLLTARLWGPEILKNVKLSCLSFQYRIS-------------GDSLTKLTLMRREMGLVLEISILRYFMSKIINISWH*RALFSNYTTHFTV**NNHLAISELDCSFDSNLCKWINDGNNWLINWVISELSENPSTFQRGICLSTSSNYKLVDGK----------PLTARLWGPVI 3798
             S LDC++ ++  CKWSNDQNNW +NW+     D+    +    +G  CL S E   +  +++RL+ P +     + CL   Y+I+              D+  KL L+RR+MG  L+                         T+  ++         +L+C F  + C W ND NNW  NW + ++    S+    +     ++  L  GK           +TARL+ P++
Sbjct: 1003 PSTLDCNFTDSSMCKWSNDQNNWPINWELDMESDLS-PAIHEENSGSVCLYSTELSQQMDISSRLFSPLMSAASNVFCLKLVYKITMSRHPLSTSADQISDTSPKLALLRRQMGESLDD------------------------TSDLSM---------DLNCEFRESTCNWSNDQNNWPANWKLIKIELEDSSKNDLVVTEKKTSICLTIGKLSAPHHQYNYDITARLFSPIV 1201

HSP 4 Score: 51.2174 bits (121), Expect = 4.916e-6
Identity = 54/237 (22.78%), Postives = 82/237 (34.60%), Query Frame = -1 
Query: 3031 ENIDEKLLTARLWGPEILKNVKLSCLSFQYRISGDSLTKLTLMRREMGLVLEISILRYFMSKIINISWH*RALFSNYTTHFTV**NNHLAISELDCSFDSNLCKWINDGNNWLINWVI---SELSENPSTFQRGI-CLSTSSNYK------------------LVDGKPLTARLWGPVIFSDMKLKCITFTYKVQSA-----------NTAKLTIMRREMGLVFIIVVYITFLWCFL 3642
            + ID K + +RLW   I   + L C+ F Y I   S T + +                   K I +                             C+F+ NLC W+ND N W   W +   S+LS N       I C++     +                      KP  ARLW P I +  KL+C+ F Y++               +  L ++RR+ G+         F++CFL
Sbjct:  139 DRIDNKPIHSRLWSASIPAELGLKCMKFVYFIQLHSPTDIPV-------------------KPIYV-----------------------------CTFNGNLCGWMNDMNIWKYQWKLVTNSKLSTNGKQQPTSILCMNAKQAIQENWINSFSSSSLITSQSSSELNKPAQARLWSPPIQAVHKLRCLQFVYQIDVGMKHGDSTRHLKESPTLALLRRQEGV---------FIYCFL 318

HSP 5 Score: 31.187 bits (69), Expect = 4.916e-6
Identity = 22/75 (29.33%), Postives = 35/75 (46.67%), Query Frame = -3 
Query: 2741 NGFCKWNNDPNNW-KIHWKLTSLNSIGFVNSEQENSGA----CLKVSED-EIEYSLAARLYGPEVLKKNEIRMYF 2947
            N +C W  DPN+W +  WK+ +L  I   + +    G+    CL  S       +L +RL+ P V   +E  M +
Sbjct:  337 NEYCSWVVDPNDWGRFRWKMDNLPLINNNDKDGSRIGSRRAMCLHRSPTIRSSETLTSRLWSPSVGVVDESSMEY 411
[Close]
BLAST of SMED30034234 vs. TrEMBL
Match: A0A095B0F9 (Uncharacterized protein OS=Schistosoma haematobium OX=6185 GN=MS3_09028 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.811e-15
Identity = 76/328 (23.17%), Postives = 113/328 (34.45%), Query Frame = -1 
Query: 3022 LDCSYE-NGFCKWSNDQNNWKLNWKQTSLVDIGFMEMGNYENGGACLKSNENIDEKLL--------------TARLWGPEILKNVKLSCLSFQYRISGDS------LTKLTLMRREMGLVLEISILRYFMSKIINISWH*RALFSNYTTHFTV**NNHLAISELD-CSFDSNLCKWINDGNNWLINWVISELSE---------NPSTFQRGICLSTSSNYKLVDG--------------------------KPLTARLWGPVIFSDMKLKCITFTYKVQ---------------SANTAKLTIMRREMGLVFIIVVYITFLWCFLIEP 3789
            L C++E N  C+W +D NNW  NW+ TS    G   +        C + N     +L                 R+  P I     + CLSF YR            + L L+RR  G+   + I   F                             LAI  +  C F  NLC W ND N+W  +W + E            +P+T +   C  TS+ Y   D                           K + +RLW   I + + LKC+TF Y +Q               S   A L +++R  G    ++  + F+  F ++P
Sbjct:   18 LSCNFESNHSCEWIDDANNWLANWRPTSYASKGDYSVKEKHQLVLCTQFNSRTKSRLRNHHGQFPGSQKINSVVRIISPPITSLDSVKCLSFMYRFENSPHFSSSSSSALNLLRRSEGIFGVLCIRLSF-----------------------------LAIDPVYFCPFTKNLCDWTNDPNSWQNHWSVIEEPNWHTTDNNGVSPTTSEESYCCLTSAVYSGSDSSNMAVRHSPWIIQPHLLNDLKDSTTKKAIHSRLWSASIPTKLGLKCMTFVYSIQFGSSSYHQDSNLFSDSTKEASLAVLQRSEGNHITLLYVLCFIADFQVKP 316

HSP 2 Score: 36.965 bits (84), Expect = 3.811e-15
Identity = 23/100 (23.00%), Postives = 37/100 (37.00%), Query Frame = -3 
Query: 2732 CSFDNGFCKWNNDPNNWKIHWKLTSLNSIGFVNSEQENSGACLKVSE--------------------DEIEYSLAARLYGPEVLKKNEIR----MYFVSV 2959
            C+ D   C W ND N WK  WKL +       N +   S  C+  +E                     ++   +  RL+ P +  K+++     MY V +
Sbjct:  320 CTLDGSLCGWMNDMNTWKHQWKLVTNKQSISSNEQLSTSMLCMNANEATPDDWFNSFSPSDLRSLSNPKMNKPVQTRLWSPPIQAKHKLHCLTFMYHVDI 419
[Close]
BLAST of SMED30034234 vs. Planmine SMEST
Match: SMESG000074173.1 (SMESG000074173.1)

HSP 1 Score: 145.976 bits (367), Expect = 1.420e-40
Identity = 66/97 (68.04%), Postives = 79/97 (81.44%), Query Frame = -1 
Query: 3499 LDCSYENGFCKWSNDQNNWKLNWKQTSLVDIGFMEMGNYENGGACLKSNENIDEKLLTARLWGPEILKNVKLSCLSFQYRISGDSLTKLTLMRREMG 3789
            LDC++EN FCKW ND NNWK+NWKQT++ ++GF+   N ENGGACL ++E  DE  LTARLW PE++KNVKL CL+FQYRI GD  TKLTLMRREMG
Sbjct:   25 LDCNFENEFCKWGNDFNNWKMNWKQTAMYELGFINTQNTENGGACLIASEIADESALTARLWSPEVMKNVKLGCLAFQYRIDGDKSTKLTLMRREMG 121

HSP 2 Score: 85.1149 bits (209), Expect = 3.180e-19
Identity = 44/107 (41.12%), Postives = 61/107 (57.01%), Query Frame = -1 
Query: 3079 NHLAISELDCSFDSNLCKWINDGNNWLINWVISELSE-----NPSTFQRGICLSTSSNYKLVDGKPLTARLWGPVIFSDMKLKCITFTYKVQSANTAKLTIMRREMG 3384
            N L    LDC+F++  CKW ND NNW +NW  + + E       +T   G CL  S   ++ D   LTARLW P +  ++KL C+ F Y++    + KLT+MRREMG
Sbjct:   18 NILGQKLLDCNFENEFCKWGNDFNNWKMNWKQTAMYELGFINTQNTENGGACLIAS---EIADESALTARLWSPEVMKNVKLGCLAFQYRIDGDKSTKLTLMRREMG 121

HSP 3 Score: 83.1889 bits (204), Expect = 1.444e-18
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = -3 
Query: 2765 ILALSDIDCSFDNGFCKWNNDPNNWKIHWKLTSLNSIGFVNSE-QENSGACLKVSEDEIEYSLAARLYGPEVLK 2983
            IL    +DC+F+N FCKW ND NNWK++WK T++  +GF+N++  EN GACL  SE   E +L ARL+ PEV+K
Sbjct:   19 ILGQKLLDCNFENEFCKWGNDFNNWKMNWKQTAMYELGFINTQNTENGGACLIASEIADESALTARLWSPEVMK 92

HSP 4 Score: 53.9138 bits (128), Expect = 3.122e-8
Identity = 26/69 (37.68%), Postives = 41/69 (59.42%), Query Frame = -2 
Query: 2232 ISDVTRKNKGVCLMSPKMSKAARLRNEKLTIRLWSPSMTADQQVGCLKFTYNLFNSNESKLTVMRREMG 2438
            I+    +N G CL++ +++  +      LT RLWSP +  + ++GCL F Y +     +KLT+MRREMG
Sbjct:   58 INTQNTENGGACLIASEIADES-----ALTARLWSPEVMKNVKLGCLAFQYRIDGDKSTKLTLMRREMG 121

HSP 5 Score: 51.9878 bits (123), Expect = 1.133e-7
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = -1 
Query: 2677 WQPVYMDRKY*KKMKLGCISFQYRIEGNQFVKLTLMRREMG 2799
            W P  M     K +KLGC++FQYRI+G++  KLTLMRREMG
Sbjct:   86 WSPEVM-----KNVKLGCLAFQYRIDGDKSTKLTLMRREMG 121

HSP 6 Score: 51.6026 bits (122), Expect = 1.718e-7
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = -2 
Query: 1683 LTARLWSPVISRKTRLSCLSFKFKIFEIRHSNATKLTIMRREMG 1814
            LTARLWSP + +  +L CL+F+++   I    +TKLT+MRREMG
Sbjct:   81 LTARLWSPEVMKNVKLGCLAFQYR---IDGDKSTKLTLMRREMG 121
[Close]
BLAST of SMED30034234 vs. Planmine SMEST
Match: SMESG000074174.1 (SMESG000074174.1)

HSP 1 Score: 117.087 bits (292), Expect = 2.519e-29
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = -1 
Query: 3499 LDCSYENGFCKWSNDQNNWKLNWKQTSLVDIGFMEMGNYENGGACLKSNENIDE-KLLTARLWGPEILKNVKLSCLSFQYRISGDSLTKLTLMRREMG 3789
            LDCS+EN FCKW+ND NNW LNW+ T++ +IG ++    EN GAC+KS E  DE + +T+RLWGP + K  K+ C++FQY+I   + +KLTLMRREMG
Sbjct:  115 LDCSFENNFCKWANDLNNWDLNWQLTAMNEIGMIDRHVIENKGACVKSTEFSDEVRTMTSRLWGPPVSKIEKIGCITFQYKIKEKNHSKLTLMRREMG 212

HSP 2 Score: 108.997 bits (271), Expect = 2.150e-26
Identity = 76/256 (29.69%), Postives = 117/256 (45.70%), Query Frame = -1 
Query: 3079 MGYAAA---ASELDCSYENGFCKWSNDQNNWKLNWKQTSLVDIGFMEMGNYENGGAC--LKSNENIDEKLLTARLWGPEILKNVKLSCLSFQYRISGDSLTKLTLMRREMGLVLEISILRYFMSKIINISWH*RALFSNYTTHFTV**NNHLAISELDCSFDSNLCKWINDGNNWLINWVISELSE-----NPSTFQRGICLSTSSNYKLVDGKPLTARLWGPVIFSDMKLKCITFTYKVQSANTAKLTIMRREMG 3816
            MGYAA    +  ++C +E+  C W ND NNW  NWK ++L  +   +   Y+  G C  L++ E+  E L+  RL    + K+ ++S            L  +T    + GL +                                          LDCSF++N CKW ND NNW +NW ++ ++E           +G C+ ++     V  + +T+RLWGP +    K+ CITF YK++  N +KLT+MRREMG
Sbjct:   12 MGYAAGQDNSRNINCQFESSLCHWINDGNNWLGNWKVSNLNTVIPEKPTKYKTNGICVVLENVESSSEGLIAVRLLSTVVRKSNRIS-----------PLKCITFNYLKSGLTI------------------------------------------LDCSFENNFCKWANDLNNWDLNWQLTAMNEIGMIDRHVIENKGACVKSTEFSDEV--RTMTSRLWGPPVSKIEKIGCITFQYKIKEKNHSKLTLMRREMG 212

HSP 3 Score: 77.0258 bits (188), Expect = 2.208e-20
Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = -3 
Query: 2753 ALSDIDCSFDNGFCKWNNDPNNWKIHWKLTSLNSIGFVNSEQ-ENSGACLKVSE--DEIEYSLAARLYGPEVLKKNEI 2977
             L+ +DCSF+N FCKW ND NNW ++W+LT++N IG ++    EN GAC+K +E  DE+  ++ +RL+GP V K  +I
Sbjct:  111 GLTILDCSFENNFCKWANDLNNWDLNWQLTAMNEIGMIDRHVIENKGACVKSTEFSDEVR-TMTSRLWGPPVSKIEKI 187

HSP 4 Score: 42.743 bits (99), Expect = 2.208e-20
Identity = 18/27 (66.67%), Postives = 22/27 (81.48%), Query Frame = -1 
Query: 2677 KLGCISFQYRIEGNQFVKLTLMRREMG 2757
            K+GCI+FQY+I+     KLTLMRREMG
Sbjct:  186 KIGCITFQYKIKEKNHSKLTLMRREMG 212

HSP 5 Score: 57.7658 bits (138), Expect = 7.311e-9
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = -2 
Query: 2232 KNKGVCLMSPKMSKAARLRNEKLTIRLWSPSMTADQQVGCLKFTYNLFNSNESKLTVMRREMG 2420
            +NKG C+ S + S   R     +T RLW P ++  +++GC+ F Y +   N SKLT+MRREMG
Sbjct:  154 ENKGACVKSTEFSDEVR----TMTSRLWGPPVSKIEKIGCITFQYKIKEKNHSKLTLMRREMG 212

HSP 6 Score: 51.2174 bits (121), Expect = 1.052e-6
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = -2 
Query: 1683 KISSIPDH-ISNRAICIENGQENSQENIDPTSDHVSNIGLTARLWSPVISRKTRLSCLSFKFKIFEIRHSNATKLTIMRREMG 1928
            +I  I  H I N+  C+++ +          SD V    +T+RLW P +S+  ++ C++F++KI E  HS   KLT+MRREMG
Sbjct:  144 EIGMIDRHVIENKGACVKSTE---------FSDEVRT--MTSRLWGPPVSKIEKIGCITFQYKIKEKNHS---KLTLMRREMG 212
[Close]
BLAST of SMED30034234 vs. Planmine SMEST
Match: SMESG000074172.1 (SMESG000074172.1)

HSP 1 Score: 108.997 bits (271), Expect = 8.840e-28
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = -1 
Query: 3079 LAISELDCSFDSNLCKWINDGNNWLINWVISELSENPSTFQRGICLSTSSNYKLV---DGKPLTARLWGPVIFSDMKLKCITFTYKVQSANTAKLTIMRREMG 3378
            LA S+LDCSFD   CKW ND NNWLINWV           + G+CL+ SS  K+V     KP+TARLW   ++SD+KL C++F Y++ +   +KLT+MRREMG
Sbjct:    9 LATSDLDCSFDDGFCKWSNDQNNWLINWV---------RMEHGVCLTLSSVVKMVRIPQEKPITARLWSAFMYSDIKLACVSFAYRLANVEKSKLTLMRREMG 102

HSP 2 Score: 95.9005 bits (237), Expect = 3.348e-23
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = -1 
Query: 3499 AASELDCSYENGFCKWSNDQNNWKLNWKQTSLVDIGFMEMGNYENGGACLKSNENIDEKLLTARLWGPEILKNVKLSCLSFQYRISGDSLTKLTLMRREMG 3801
            A S+LDCS+++GFCKWSNDQNNW +NW +        ME G      + +K      EK +TARLW   +  ++KL+C+SF YR++    +KLTLMRREMG
Sbjct:   10 ATSDLDCSFDDGFCKWSNDQNNWLINWVR--------MEHGVCLTLSSVVKMVRIPQEKPITARLWSAFMYSDIKLACVSFAYRLANVEKSKLTLMRREMG 102

HSP 3 Score: 64.3142 bits (155), Expect = 3.972e-12
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = -2 
Query: 2232 LASSDLECTFESSDMCXXXXXXXXXXXXWKIQDISDVTRKNKGVCLMSPKMSKAARLRNEK-LTIRLWSPSMTADQQVGCLKFTYNLFNSNESKLTVMRREMG 2537
            LA+SDL+C+F+    C W ND NNW        + +  R   GVCL    + K  R+  EK +T RLWS  M +D ++ C+ F Y L N  +SKLT+MRREMG
Sbjct:    9 LATSDLDCSFDDG-FCKWSNDQNNW--------LINWVRMEHGVCLTLSSVVKMVRIPQEKPITARLWSAFMYSDIKLACVSFAYRLANVEKSKLTLMRREMG 102

HSP 4 Score: 55.0694 bits (131), Expect = 7.506e-9
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = -3 
Query: 2897 ILALSDIDCSFDNGFCKWNNDPNNWKIHW 2983
            ILA SD+DCSFD+GFCKW+ND NNW I+W
Sbjct:    8 ILATSDLDCSFDDGFCKWSNDQNNWLINW 36
[Close]
BLAST of SMED30034234 vs. Planmine SMEST
Match: SMESG000074174.1 (SMESG000074174.1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.729e-17
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = -1 
Query: 3055 LDCSFDSNLCKWINDGNNWLINWVISELS----ENPSTFQ-RGICLSTSSNYKLVDGKPLTARLWGPVIFSDMK---LKCITFTYKVQSANTAKLTIMRREMGLVFIIVVY 3363
            ++C F+S+LC WINDGNNWL NW +S L+    E P+ ++  GIC+   +     +G  +  RL   V+    +   LKCITF Y ++S NT K+T+MRREMGLV + ++Y
Sbjct:   24 INCQFESSLCHWINDGNNWLGNWKVSNLNTVIPEKPTKYKTNGICVVLENVESSSEG-LIAVRLLSTVVRKSNRISPLKCITFNY-LKSGNT-KMTLMRREMGLVQLDLIY 131

HSP 2 Score: 77.0258 bits (188), Expect = 4.579e-16
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = -1 
Query: 3493 MGYAAA---ASELDCSYENGFCKWSNDQNNWKLNWKQTSLVDIGFMEMGNYENGGAC--LKSNENIDEKLLTARLWGPEILKNVKLS---CLSFQYRISGDSLTKLTLMRREMGLV 3816
            MGYAA    +  ++C +E+  C W ND NNW  NWK ++L  +   +   Y+  G C  L++ E+  E L+  RL    + K+ ++S   C++F Y  SG+  TK+TLMRREMGLV
Sbjct:   12 MGYAAGQDNSRNINCQFESSLCHWINDGNNWLGNWKVSNLNTVIPEKPTKYKTNGICVVLENVESSSEGLIAVRLLSTVVRKSNRISPLKCITFNYLKSGN--TKMTLMRREMGLV 125

HSP 3 Score: 45.0542 bits (105), Expect = 4.182e-9
Identity = 26/75 (34.67%), Postives = 42/75 (56.00%), Query Frame = -3 
Query: 2753 DIDCSFDNGFCKWNNDPNNWKIHWKLTSLNS-IGFVNSEQENSGACLKVS--EDEIEYSLAARLYGPEVLKKNEI 2968
            +I+C F++  C W ND NNW  +WK+++LN+ I    ++ + +G C+ +   E   E  +A RL    V K N I
Sbjct:   23 NINCQFESSLCHWINDGNNWLGNWKVSNLNTVIPEKPTKYKTNGICVVLENVESSSEGLIAVRLLSTVVRKSNRI 97

HSP 4 Score: 36.5798 bits (83), Expect = 4.182e-9
Identity = 20/36 (55.56%), Postives = 23/36 (63.89%), Query Frame = -1 
Query: 2671 RKY*KKMKLGCISFQYRIEGNQFVKLTLMRREMGLV 2778
            RK  +   L CI+F Y   GN   K+TLMRREMGLV
Sbjct:   92 RKSNRISPLKCITFNYLKSGN--TKMTLMRREMGLV 125
The following BLAST results are available for this feature:
BLAST of SMED30034234 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30034234 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30034234 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30034234 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30034234 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30034234 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30034234 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30034234 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A183R9441.044e-1627.66Uncharacterized protein OS=Schistosoma rodhaini OX... [more]
G7YQK82.786e-1627.31Uncharacterized protein (Fragment) OS=Clonorchis s... [more]
A0A183WF714.636e-1625.18Uncharacterized protein OS=Trichobilharzia regenti... [more]
A0A3P8LMT64.870e-1625.18Uncharacterized protein (Fragment) OS=Trichobilhar... [more]
A0A095B0F93.811e-1523.17Uncharacterized protein OS=Schistosoma haematobium... [more]
back to top
BLAST of SMED30034234 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30034234 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30034234 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30034234 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30034234 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30034234 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000074173.11.420e-4068.04SMESG000074173.1[more]
SMESG000074174.12.519e-2955.10SMESG000074174.1[more]
SMESG000074172.18.840e-2850.49SMESG000074172.1[more]
SMESG000074174.15.729e-1743.24SMESG000074174.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30034234 ID=SMED30034234|Name=SMED30034234|organism=Schmidtea mediterranea sexual|type=transcript|length=3927bp
GCCTTCCAAGATCAACTTAAAATCTCCAGAATTTGACTCGTTAATTGAAA
TAAAAACCGTTGTCCATGAATTAACATTTTTCGTCGGCGAATTTTTAGTC
GACCAAATGGGAACATTTCCACAAAGAAGAGCCGGCAATCCATTTTCATC
AATTGTCGATTTGCATGATCCGTCAGAATGTTTTAATAATGACAAAACTA
CTGGAGCTTTATTTCCAATGTCTGAATAGTCAACTGAAGCCATTTCTATT
CTATAAAGAAATTTCATGCATATTCCATTCTTTTTGCTGTTTGCTAGATT
CAACCAAGAGCTCCAAAGTCTGGCTGAATGTTTTTTTGACATTGACAACA
TTGGAAAGGACCGGTTGCATGCAAGCAGCATCCCCAATAGCAGGTCCATA
ATTCATTGACTCCCATATGGCAGTTTTATCTCGTGGATCCACATTCCATC
GACAAAATGAGCCTTCGTAATTGAAATTGCAGTTTAGTTGCTTTTCAATT
TTCCCAACTATATATTGACAAATTAATAAATTAATGGAATTATATTTGCA
CTGAGCAAGACCGTTGATGGTGCACTTATTATTTTTTTTAATTAAAATTA
ATTATAAGCTATTTCTTAGATATACGGATCTAACGGACTAGTTAATATTA
TTAATTTATTAATAATCATCATCTTGTATAATATTACTATTTTATCCTGT
TAAATCAAAATTTTATTTACCCGTCAGAATGTTTTAAAAGAGATAAAATA
GCAGGAAGTTTAATAGAATCCCCATTTTCATTGCTATTTACCATATCTAT
GCGATAAACAAATTTAAGACATAATGATTTGATGTTGTCTTTTTCCAAGT
TTAACCAAGAACTCCAAAGTCTTGCTGAGTGCTTTTGATTGAGAAAAACA
GAATTTCGTGCTGGTCGCATGCAAGCAACATCACCAATTAGGAGACCATA
ATTCATAGACTCCCATGTTGCGGTTTTATCACGAGGGTCGTCTTTCCATC
GACAAAATGAGCCCTCTTCATCAAAACGACAATTCAAAAGTCGTTCTGTT
TTATCCGCTGCAAATAAACGTCGAAAATTAAATCTTGAAGGAAAAAATGC
ATTGAAAACCGGCAGTTATTGGAACTCAATCAGTTGATGATTTTTATAAA
AATTTTAAAAAATTAAAAGCTGTGTTGTTTTTAAAGTTCTTATACTTTTA
AAATAAATCTTAAAATTTCTTTTAAACTAACCCTTCAGAATGCTTCAAAA
GAGATATACTGATATTCCTAATACTTTGGGAATCATTTTCAATGTAATAA
CTAAATCGAAAACATTTTCCAATGTCCATGTCACTAGTCAACCACTGACT
CCACAATCTTCCACTATGTTTCGATTGTTTCCTAACGCGTAATGCTTTCA
TGCATGCCGCTTCGCTAATTTTCCCCTGGAAATTTCTAGACTCCCAAGTT
TTGATTCTATCTCTCGGATCCAAATACCAATTGCAAAATGAATTTTGTTT
AAATTCACAATTCAACACACTTTGAAAATCTTCATTTACATTGGCGCAAT
CTGTAACCAATAAAATGAATCCATTACATTTAAAATTTATGCATTCAGAT
AGCAAGGCTCATGATGGAATAAATAAATACATATATAAAATTGTTTAATT
TAATAATTGTCACAAAAATTTGTTAAATCTAACCCCATTTCCCGCCTCAT
AATGGTTAATTTAGTCGCATTGGAGTGACGAATTTCGAATATTTTAAATT
TAAATGACAAACAGGACAATCGAGTTTTTCTTGAAATTACTGGACTCCAT
AACCTGGCAGTTAAGCCTATATTAGACACATGGTCGCTTGTTGGATCTAT
ATTTTCTTGACTATTTTCTTGACCATTTTCAATACATATCGCACGATTCG
ATATATGATCAGGAATACTTGAAATTTTCCAATTGATCATCCAATTACCA
TTATCATTATTCCAATTACAAAGATTGCTACCTTCAAAGTCGCAAAATAA
CCGAGAACCGTATTTAATAAACTTGATATTTTCTAAAAATATTATCAATT
TAAATTATCATTTGGAGACACGTTACAAGGTTCGTTAACTAGATTCTTAT
TAATATGATTTGCATTTATTCAACTGTTTCTTAATATATATTTAATAAAA
TATAATTAATTTATTGGACAATAAATTCAGAATTTAATTCATTTTCATTA
GTTACAATTTTAACCAATAGAATTAAACCTACCCCATTTCTCTTCGCATA
ACCGTTAATTTACTTTCGTTACTGTTAAACAAATTATATGTGAACTTTAA
GCAGCCAACTTGTTGATCAGCTGTCATAGAAGGACTCCAGAGTCGAATAG
TTAATTTTTCGTTTCTTAGTCGAGCGGCTTTCGACATTTTAGGTGACATT
AAACAAACGCCCTTATTTTTCCTGGTCACATCAGATATATCCTGAATTTT
CCAATTCGTCAACCAGTTATTGTTATCGTTAACCCAGTTACACATGTCAC
TTGATTCGAAAGTGCATTCCAAATCGGAACTTGCTAAAGTATACCTTACA
ATAGAATTTTTTACACGAAACACTGAGAACATAGCTCATGGGTTAGAAAA
TCATAATTTTATATATTAAATTCTAAATTTCAACGAATAAAAAGTATTCG
AAGGATTTTAAATTTCCGACTACTAACCCCATTTCTCTTCGCATTAATGT
CAATTTAACAAACTGATTCCCTTCAATTCGATACTGAAACGAAATACATC
CTAATTTCATTTTTTTTTAATACTTCCGGTCCATATAGACGGGCTGCCAA
TGAGTATTCGATTTCATCTTCAGAAACTTTCAAACATGCTCCACTATTTT
CTTGTTCACTATTGACAAAACCGATACTGTTCAATGATGTAAGTTTCCAG
TGGATTTTCCAATTATTCGGATCATTGTTCCATTTACAGAAGCCGTTATC
AAATGAACAGTCAATATCTGACAATGCTAAAATCAAGTTCAATACTTTTC
GTTTGGAAAATATTGAGAACAAGGCTCGATTAGAAAACACCATAAAAATG
TTATGTAAACAACGATAATAAACACTAACCCCATTTCCCTTCTCATTATT
GTTAATTTAGCTGTGTTTGCGCTCTGGACTTTATAAGTAAATGTAATGCA
TTTCAATTTCATGTCACTAAAAATCACGGGACCCCACAGCCGAGCAGTCA
ATGGTTTTCCATCGACTAACTTATAATTAGATGAAGTACTCAAACAAATT
CCTCGTTGAAATGTGGAAGGATTCTCACTTAATTCAGAGATAACCCAATT
AATTAACCAATTATTTCCATCATTTATCCATTTGCAAAGATTGCTATCAA
AGCTACAATCCAGTTCCGAAATAGCTAAATGGTTATTTTATTAGACGGTG
AAATGTGTAGTATAATTTGAGAACAATGCTCGCTAGTGCCACGAAATATT
TATTATTTTACTCATAAAATAACGCAGAATGGAAATCTCTAGTACTAACC
CCATTTCTCTTCTCATCAAAGTTAATTTTGTAAGGCTATCGCCTGATATT
CTATATTGAAACGAAAGACAACTTAATTTGACATTTTTCAGTATTTCTGG
GCCCCATAAACGAGCAGTCAACAGCTTTTCGTCTATATTTTCATTTGATT
TTAAGCAAGCACCTCCATTTTCATAGTTTCCCATTTCCATGAAACCAATA
TCTACGAGTGACGTTTGTTTCCAGTTTAATTTCCAATTATTCTGATCATT
ACTCCATTTACAAAACCCATTTTCGTAACTACAATCCAACTCAGACGCAG
CTGCGGCATATCCCATAATGCACAGTAGTAAAATCGTTTTCAATGTCATA
GTTAACAAAGACAATATTTTAAATATTTTAAAATGAGTAATATATTTTAA
AGTTAGCAGAATAAATAAATTACTCAT
back to top

protein sequence of SMED30034234-orf-1

>SMED30034234-orf-1 ID=SMED30034234-orf-1|Name=SMED30034234-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=133bp
MDLLLGMLLACNRSFPMLSMSKKHSARLWSSWLNLANSKKNGICMKFLYR
IEMASVDYSDIGNKAPVVLSLLKHSDGSCKSTIDENGLPALLCGNVPIWS
TKNSPTKNVNSWTTVFISINESNSGDFKLILEG
back to top

protein sequence of SMED30034234-orf-2

>SMED30034234-orf-2 ID=SMED30034234-orf-2|Name=SMED30034234-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=165bp
MSNLFILLTLKYITHFKIFKILSLLTMTLKTILLLCIMGYAAAASELDCS
YENGFCKWSNDQNNWKLNWKQTSLVDIGFMEMGNYENGGACLKSNENIDE
KLLTARLWGPEILKNVKLSCLSFQYRISGDSLTKLTLMRREMGLVLEISI
LRYFMSKIINISWH*
back to top

protein sequence of SMED30034234-orf-3

>SMED30034234-orf-3 ID=SMED30034234-orf-3|Name=SMED30034234-orf-3|organism=Schmidtea mediterranea sexual|type=polypeptide|length=118bp
MFSVFRVKNSIVRYTLASSDLECTFESSDMCNWVNDNNNWLTNWKIQDIS
DVTRKNKGVCLMSPKMSKAARLRNEKLTIRLWSPSMTADQQVGCLKFTYN
LFNSNESKLTVMRREMG*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR000998MAM_dom
IPR013320ConA-like_dom_sf
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.60.120.200coord: 45..151
e-value: 3.0E-7
score: 32.5
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
IPR000998MAM domainPFAMPF00629MAMcoord: 48..142
e-value: 2.1E-7
score: 31.0
IPR000998MAM domainPROSITEPS50060MAM_2coord: 46..163
score: 10.359
IPR013320Concanavalin A-like lectin/glucanase domain superfamilySUPERFAMILYSSF49899Concanavalin A-like lectins/glucanasescoord: 45..142