60S ribosomal protein L11

Overview
Name60S ribosomal protein L11
Smed IDSMED30034152
Length (bp)647
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 60S ribosomal protein L11 (SMED30034152) t-SNE clustered cells

Violin plots show distribution of expression levels for 60S ribosomal protein L11 (SMED30034152) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 60S ribosomal protein L11 (SMED30034152) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 60S ribosomal protein L11 (SMED30034152) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30034152

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 15

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30034152SMESG000012668.1 SMESG000012475.1 SmedASXL_004230SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30034152SMESG000012668.1 SMESG000012475.1 dd_Smed_v4_144_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30034152SMESG000012668.1 SMESG000012475.1 dd_Smed_v4_144_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30034152SMESG000012668.1 SMESG000012475.1 dd_Smed_v4_144_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30034152SMESG000012668.1 SMESG000012475.1 dd_Smed_v4_144_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30034152SMESG000012668.1 SMESG000012475.1 dd_Smed_v4_144_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30034152SMESG000012668.1 SMESG000012475.1 dd_Smed_v4_144_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30034152SMESG000012668.1 SMESG000012475.1 dd_Smed_v4_144_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30034152SMESG000012668.1 SMESG000012475.1 dd_Smed_v4_144_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30034152SMESG000012668.1 SMESG000012475.1 dd_Smed_v4_144_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30034152SMESG000012668.1 SMESG000012475.1 dd_Smed_v4_144_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30034152SMESG000012668.1 SMESG000012475.1 dd_Smed_v4_144_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30034152SMESG000012668.1 SMESG000012475.1 dd_Smed_v4_144_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30034152SMESG000012668.1 SMESG000012475.1 dd_Smed_v6_144_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gamma neoblastSMED30034152SMESG000012668.1 SMESG000012475.1 dd_Smed_v6_144_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of 60S ribosomal protein L11 vs. Ensembl Human
Match: RPL11 (ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301])

HSP 1 Score: 262.692 bits (670), Expect = 1.060e-89
Identity = 124/167 (74.25%), Postives = 146/167 (87.43%), Query Frame = 1
Query:  115 ENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            ENPM++++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A ++++   +GA+HRI+KE+A +WFQQ YDGI+L
Sbjct:    8 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 174          
BLAST of 60S ribosomal protein L11 vs. Ensembl Human
Match: RPL11 (ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301])

HSP 1 Score: 262.692 bits (670), Expect = 1.159e-89
Identity = 124/167 (74.25%), Postives = 146/167 (87.43%), Query Frame = 1
Query:  115 ENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            ENPM++++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A ++++   +GA+HRI+KE+A +WFQQ YDGI+L
Sbjct:    9 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
BLAST of 60S ribosomal protein L11 vs. Ensembl Human
Match: RPL11 (ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301])

HSP 1 Score: 254.988 bits (650), Expect = 9.308e-87
Identity = 121/164 (73.78%), Postives = 143/164 (87.20%), Query Frame = 1
Query:  124 MKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            M++++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A ++++   +GA+HRI+KE+A +WFQQ YDGI+L
Sbjct:    1 MRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 164          
BLAST of 60S ribosomal protein L11 vs. Ensembl Celegans
Match: rpl-11.2 (60S ribosomal protein L11-2 [Source:UniProtKB/Swiss-Prot;Acc:Q19162])

HSP 1 Score: 263.848 bits (673), Expect = 3.074e-90
Identity = 126/171 (73.68%), Postives = 143/171 (83.63%), Query Frame = 1
Query:  103 EAGVENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            E    N M+++KI KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVR+FGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL K  FS  GNFGFG+ EHIDLG+KYDPSIGIYGMDFYVVL RAGRR+A RR+   +VG  HR+ +E++ KWFQQ YDGI+L
Sbjct:   12 EKKARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKYDGIIL 182          
BLAST of 60S ribosomal protein L11 vs. Ensembl Celegans
Match: rpl-11.1 (60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q94300])

HSP 1 Score: 256.144 bits (653), Expect = 3.419e-87
Identity = 122/166 (73.49%), Postives = 138/166 (83.13%), Query Frame = 1
Query:  118 NPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            N M+++KI KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVR+FGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL K  FS  GNFGFG+ EHIDLG+KYDP IGIYGMDFYVVL R G RV+ RR+   ++G  HR+ KE+  KWFQQ YDGI+L
Sbjct:   17 NVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182          
BLAST of 60S ribosomal protein L11 vs. Ensembl Celegans
Match: rpl-11.1 (60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q94300])

HSP 1 Score: 65.0846 bits (157), Expect = 2.901e-14
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1
Query:  472 MDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            MDFYVVL R G RV+ RR+   ++G  HR+ KE+  KWFQQ YDGI+L
Sbjct:    1 MDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 48          
BLAST of 60S ribosomal protein L11 vs. Ensembl Celegans
Match: rpl-11.1 (60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q94300])

HSP 1 Score: 65.0846 bits (157), Expect = 2.901e-14
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1
Query:  472 MDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            MDFYVVL R G RV+ RR+   ++G  HR+ KE+  KWFQQ YDGI+L
Sbjct:    1 MDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 48          
BLAST of 60S ribosomal protein L11 vs. Ensembl Celegans
Match: rpl-11.1 (60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q94300])

HSP 1 Score: 65.0846 bits (157), Expect = 2.901e-14
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1
Query:  472 MDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            MDFYVVL R G RV+ RR+   ++G  HR+ KE+  KWFQQ YDGI+L
Sbjct:    1 MDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 48          
BLAST of 60S ribosomal protein L11 vs. Ensembl Fly
Match: RpL11 (gene:FBgn0013325 transcript:FBtr0340533)

HSP 1 Score: 268.855 bits (686), Expect = 2.195e-92
Identity = 127/169 (75.15%), Postives = 144/169 (85.21%), Query Frame = 1
Query:  112 VENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLN 618
             +NPM+ + I KLC+NICVGESGDRLTRA KVLEQLTGQQPVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILE+GLKV EYEL++  FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  V +R+++   VG QHR+TKEDA KWFQQ YDGI+LN
Sbjct:   13 AKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181          
BLAST of 60S ribosomal protein L11 vs. Ensembl Fly
Match: RpL11 (gene:FBgn0013325 transcript:FBtr0086533)

HSP 1 Score: 268.855 bits (686), Expect = 2.195e-92
Identity = 127/169 (75.15%), Postives = 144/169 (85.21%), Query Frame = 1
Query:  112 VENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLN 618
             +NPM+ + I KLC+NICVGESGDRLTRA KVLEQLTGQQPVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILE+GLKV EYEL++  FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  V +R+++   VG QHR+TKEDA KWFQQ YDGI+LN
Sbjct:   13 AKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181          
BLAST of 60S ribosomal protein L11 vs. Ensembl Zebrafish
Match: rpl11 (ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147])

HSP 1 Score: 264.233 bits (674), Expect = 2.116e-90
Identity = 124/167 (74.25%), Postives = 146/167 (87.43%), Query Frame = 1
Query:  115 ENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            ENPM++++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A ++++  ++GA+HRI KE+A +WFQQ YDGI+L
Sbjct:    9 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKTGRIGAKHRIRKEEAMRWFQQKYDGIIL 175          
BLAST of 60S ribosomal protein L11 vs. Ensembl Xenopus
Match: rpl11 (ribosomal protein L11 [Source:NCBI gene;Acc:549394])

HSP 1 Score: 263.848 bits (673), Expect = 4.137e-90
Identity = 124/167 (74.25%), Postives = 146/167 (87.43%), Query Frame = 1
Query:  115 ENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            ENPM++++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A +++++  +GA+HRI KE+A +WFQQ YDGI+L
Sbjct:    8 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGTIGAKHRIGKEEAMRWFQQKYDGIIL 174          
BLAST of 60S ribosomal protein L11 vs. Ensembl Xenopus
Match: rpl11 (ribosomal protein L11 [Source:NCBI gene;Acc:549394])

HSP 1 Score: 253.447 bits (646), Expect = 4.174e-86
Identity = 119/160 (74.38%), Postives = 140/160 (87.50%), Query Frame = 1
Query:  115 ENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQ 594
            ENPM++++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A +++++  +GA+HRI KE+A +WFQQ
Sbjct:    8 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGTIGAKHRIGKEEAMRWFQQ 167          
BLAST of 60S ribosomal protein L11 vs. Ensembl Xenopus
Match: rpl11 (ribosomal protein L11 [Source:NCBI gene;Acc:549394])

HSP 1 Score: 253.062 bits (645), Expect = 7.000e-86
Identity = 119/160 (74.38%), Postives = 140/160 (87.50%), Query Frame = 1
Query:  115 ENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQ 594
            ENPM++++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A +++++  +GA+HRI KE+A +WFQQ
Sbjct:   11 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGTIGAKHRIGKEEAMRWFQQ 170          
BLAST of 60S ribosomal protein L11 vs. Ensembl Xenopus
Match: rpl11 (ribosomal protein L11 [Source:NCBI gene;Acc:549394])

HSP 1 Score: 252.292 bits (643), Expect = 1.993e-85
Identity = 119/162 (73.46%), Postives = 141/162 (87.04%), Query Frame = 1
Query:  115 ENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNY 600
            ENPM++++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A +++++  +GA+HRI KE+A +WFQQ +
Sbjct:   11 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGTIGAKHRIGKEEAMRWFQQKH 172          
BLAST of 60S ribosomal protein L11 vs. Ensembl Xenopus
Match: rpl11 (ribosomal protein L11 [Source:NCBI gene;Acc:549394])

HSP 1 Score: 244.973 bits (624), Expect = 8.243e-83
Identity = 116/157 (73.89%), Postives = 137/157 (87.26%), Query Frame = 1
Query:  124 MKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQ 594
            M++++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A +++++  +GA+HRI KE+A +WFQQ
Sbjct:    1 MRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGTIGAKHRIGKEEAMRWFQQ 157          
BLAST of 60S ribosomal protein L11 vs. Ensembl Mouse
Match: Rpl11 (ribosomal protein L11 [Source:MGI Symbol;Acc:MGI:1914275])

HSP 1 Score: 262.692 bits (670), Expect = 7.955e-90
Identity = 124/167 (74.25%), Postives = 146/167 (87.43%), Query Frame = 1
Query:  115 ENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            ENPM++++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A ++++   +GA+HRI+KE+A +WFQQ YDGI+L
Sbjct:    9 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
BLAST of 60S ribosomal protein L11 vs. Ensembl Mouse
Match: Rpl11 (ribosomal protein L11 [Source:MGI Symbol;Acc:MGI:1914275])

HSP 1 Score: 253.832 bits (647), Expect = 2.415e-86
Identity = 121/171 (70.76%), Postives = 144/171 (84.21%), Query Frame = 1
Query:   82 MATENKVEAGVENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQ 594
            MA   + +   ENPM++++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A ++++   +GA+HRI+KE+A +WFQQ
Sbjct:    1 MAQRPQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQ 171          
BLAST of 60S ribosomal protein L11 vs. UniProt/SwissProt
Match: sp|P46222|RL11_DROME (60S ribosomal protein L11 OS=Drosophila melanogaster OX=7227 GN=RpL11 PE=1 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 2.200e-91
Identity = 127/169 (75.15%), Postives = 144/169 (85.21%), Query Frame = 1
Query:  112 VENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLN 618
             +NPM+ + I KLC+NICVGESGDRLTRA KVLEQLTGQQPVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILE+GLKV EYEL++  FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  V +R+++   VG QHR+TKEDA KWFQQ YDGI+LN
Sbjct:   13 AKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181          
BLAST of 60S ribosomal protein L11 vs. UniProt/SwissProt
Match: sp|Q19162|RL112_CAEEL (60S ribosomal protein L11-2 OS=Caenorhabditis elegans OX=6239 GN=rpl-11.2 PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 3.910e-89
Identity = 126/171 (73.68%), Postives = 143/171 (83.63%), Query Frame = 1
Query:  103 EAGVENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            E    N M+++KI KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVR+FGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL K  FS  GNFGFG+ EHIDLG+KYDPSIGIYGMDFYVVL RAGRR+A RR+   +VG  HR+ +E++ KWFQQ YDGI+L
Sbjct:   12 EKKARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKYDGIIL 182          
BLAST of 60S ribosomal protein L11 vs. UniProt/SwissProt
Match: sp|A8XJ93|RL112_CAEBR (60S ribosomal protein L11-2 OS=Caenorhabditis briggsae OX=6238 GN=rpl-11.2 PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 3.910e-89
Identity = 126/171 (73.68%), Postives = 143/171 (83.63%), Query Frame = 1
Query:  103 EAGVENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            E    N M+++KI KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVR+FGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL K  FS  GNFGFG+ EHIDLG+KYDPSIGIYGMDFYVVL RAGRR+A RR+   +VG  HR+ +E++ KWFQQ YDGI+L
Sbjct:   12 EKKARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKYDGIIL 182          
BLAST of 60S ribosomal protein L11 vs. UniProt/SwissProt
Match: sp|P62914|RL11_RAT (60S ribosomal protein L11 OS=Rattus norvegicus OX=10116 GN=Rpl11 PE=1 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 5.565e-89
Identity = 124/167 (74.25%), Postives = 146/167 (87.43%), Query Frame = 1
Query:  115 ENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            ENPM++++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A ++++   +GA+HRI+KE+A +WFQQ YDGI+L
Sbjct:    9 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
BLAST of 60S ribosomal protein L11 vs. UniProt/SwissProt
Match: sp|Q9CXW4|RL11_MOUSE (60S ribosomal protein L11 OS=Mus musculus OX=10090 GN=Rpl11 PE=1 SV=4)

HSP 1 Score: 262.692 bits (670), Expect = 5.565e-89
Identity = 124/167 (74.25%), Postives = 146/167 (87.43%), Query Frame = 1
Query:  115 ENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            ENPM++++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A ++++   +GA+HRI+KE+A +WFQQ YDGI+L
Sbjct:    9 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
BLAST of 60S ribosomal protein L11 vs. TrEMBL
Match: A0A504Z3T3 (Ribosomal protein L11 OS=Fasciola gigantica OX=46835 GN=FGIG_02905 PE=3 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 4.132e-96
Identity = 133/168 (79.17%), Postives = 150/168 (89.29%), Query Frame = 1
Query:  118 NPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLNK 621
            NPM++IKI KLC+NICVGESGDRLTRA KVLEQLTGQQPVFSKARLT+R+F IRRNEKI+V+ TVRG KAEEILEKGLKV EYEL KSCFS  GNFGFG+TEHIDLG+KYDPSIGIYGMDFYV+L RAG RVAYRR+ K+++G  H ITKE+A KWFQ  +DGILLN+
Sbjct:   14 NPMREIKIQKLCMNICVGESGDRLTRAAKVLEQLTGQQPVFSKARLTIRTFAIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELPKSCFSSRGNFGFGLTEHIDLGIKYDPSIGIYGMDFYVILGRAGSRVAYRRRCKNRIGPSHHITKEEAMKWFQSKFDGILLNR 181          
BLAST of 60S ribosomal protein L11 vs. TrEMBL
Match: A0A2H1CUL2 (Ribosomal protein L11 OS=Fasciola hepatica OX=6192 GN=D915_000853 PE=3 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.379e-95
Identity = 132/168 (78.57%), Postives = 150/168 (89.29%), Query Frame = 1
Query:  118 NPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLNK 621
            NPM++IKI KLC+NICVGESGDRLTRA KVLEQLTGQQPVFSKARLT+R+F IRRNEKI+V+ TVRG KAEEILEKGLKV EYEL KSCFS  GNFGFG+TEHIDLG+KYDPSIGIYGMDFYV+L RAG RVAYRR+ K+++G  H I+KE+A KWFQ  +DGILLN+
Sbjct:   14 NPMREIKIQKLCMNICVGESGDRLTRAAKVLEQLTGQQPVFSKARLTIRTFAIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELPKSCFSSRGNFGFGLTEHIDLGIKYDPSIGIYGMDFYVILGRAGSRVAYRRRCKNRIGPSHHISKEEAMKWFQSKFDGILLNR 181          
BLAST of 60S ribosomal protein L11 vs. TrEMBL
Match: A0A074ZUK0 (Ribosomal protein L5 OS=Opisthorchis viverrini OX=6198 GN=T265_12116 PE=3 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.187e-94
Identity = 132/168 (78.57%), Postives = 149/168 (88.69%), Query Frame = 1
Query:  118 NPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLNK 621
            NPM++IKI KLC+NICVGESGDRLTRA KVLEQLTGQQPVFSKARLT+R+F IRRNEKI+V+ TVRG KAEEILEKGLKV EYEL +SCFS  GNFGFG+TEHIDLG+KYDP+IGIYGMDFYV+L R G RV YRR+ KSKVGA H I+KE+A KWFQ  +DGILL+K
Sbjct:   18 NPMREIKIQKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARLTIRTFAIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELPRSCFSDRGNFGFGLTEHIDLGIKYDPAIGIYGMDFYVILGRPGSRVNYRRRCKSKVGASHHISKEEAMKWFQSKFDGILLHK 185          
BLAST of 60S ribosomal protein L11 vs. TrEMBL
Match: A0A564Y4H4 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS2391 PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.590e-94
Identity = 130/168 (77.38%), Postives = 150/168 (89.29%), Query Frame = 1
Query:  118 NPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLNK 621
            NPM+ I+I KLC+NICVGESGDRLTRA KVLEQLT QQPVFSKARLTVR+FGIRRNEKI+V+ TVRG KAEEILE+GLKV EYEL KSCFS+ G+FGFG+TEHIDLGLKYDPSIGIYGMDFYV+L RAG+RV +RR+  S++G QH +T+E+A KWFQ  YDGIL+NK
Sbjct:   12 NPMRSIRIQKLCLNICVGESGDRLTRAAKVLEQLTNQQPVFSKARLTVRTFGIRRNEKIAVHCTVRGAKAEEILERGLKVKEYELPKSCFSKMGHFGFGLTEHIDLGLKYDPSIGIYGMDFYVILGRAGQRVTHRRRCVSRIGPQHHVTREEAMKWFQSKYDGILMNK 179          
BLAST of 60S ribosomal protein L11 vs. TrEMBL
Match: A0A0X3NRX7 (60S ribosomal protein L11 OS=Schistocephalus solidus OX=70667 GN=RL11 PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 4.628e-94
Identity = 132/168 (78.57%), Postives = 150/168 (89.29%), Query Frame = 1
Query:  118 NPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLNK 621
            NPM++IKI KLC+NICVGESGDRLTRA KVLEQLT QQPVFSKARLTVR+FGIRRNEKI+V+ TVRG KAEEILE+GLKV EYEL KSCFS+ G+FGFGITEHIDL LKYDP+IGIYGMDFYV+L R G+RVA+RR+  SKVG +H +TKE+A KWFQ  YDGIL+NK
Sbjct:   12 NPMREIKIQKLCLNICVGESGDRLTRAAKVLEQLTQQQPVFSKARLTVRTFGIRRNEKIAVHCTVRGAKAEEILERGLKVKEYELPKSCFSKMGHFGFGITEHIDLNLKYDPAIGIYGMDFYVILARPGQRVAHRRRCVSKVGPKHHVTKEEAMKWFQSKYDGILMNK 179          
BLAST of 60S ribosomal protein L11 vs. Ensembl Cavefish
Match: rpl11 (ribosomal protein L11 [Source:NCBI gene;Acc:103044600])

HSP 1 Score: 261.922 bits (668), Expect = 1.141e-89
Identity = 123/167 (73.65%), Postives = 146/167 (87.43%), Query Frame = 1
Query:  115 ENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            ENPM++++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A +++++ ++G +HRI KE+A +WFQQ YDGI+L
Sbjct:    9 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGRIGFKHRIRKEEAMRWFQQKYDGIIL 175          
BLAST of 60S ribosomal protein L11 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010472.1 (pep scaffold:Pmarinus_7.0:GL476970:103213:106958:-1 gene:ENSPMAG00000009481.1 transcript:ENSPMAT00000010472.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 181.8 bits (460), Expect = 1.614e-59
Identity = 87/123 (70.73%), Postives = 105/123 (85.37%), Query Frame = 1
Query:  247 ARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            AR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+KS FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A +++++ ++G +HRI KE+A +WFQQ YDG++L
Sbjct:    1 ARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKSNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFCIADKKRKRGRIGFKHRIFKEEAIRWFQQKYDGVIL 123          
BLAST of 60S ribosomal protein L11 vs. Ensembl Yeast
Match: RPL11A (Ribosomal 60S subunit protein L11A; expressed at twice the level of Rpl11Bp; involved in ribosomal assembly; depletion causes degradation of 60S proteins and RNA; homologous to mammalian ribosomal protein L11 and bacterial L5; RPL11A has a paralog, RPL11B, that arose from the whole genome duplication [Source:SGD;Acc:S000006306])

HSP 1 Score: 243.432 bits (620), Expect = 2.792e-83
Identity = 116/174 (66.67%), Postives = 137/174 (78.74%), Query Frame = 1
Query:  100 VEAGVENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLNK 621
            + A  +NPM+ +KI KL +NI VGESGDRLTRA KVLEQL+GQ PV SKAR TVR+FGIRRNEKI+V+ TVRG KAEEILE+GLKV EY+L+   FS  GNFGFGI EHIDLG+KYDPSIGI+GMDFYVV+ R G RV  R++ K  VG  H+ TKED   WF+Q YD  +L+K
Sbjct:    1 MSAKAQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADVLDK 174          
BLAST of 60S ribosomal protein L11 vs. Ensembl Yeast
Match: RPL11B (Ribosomal 60S subunit protein L11B; expressed at half the level of Rpl11Ap; involved in ribosomal assembly; depletion causes degradation of 60S proteins and RNA; homologous to mammalian ribosomal protein L11 and bacterial L5; RPL11B has a paralog, RPL11A, that arose from the whole genome duplication [Source:SGD;Acc:S000003317])

HSP 1 Score: 241.891 bits (616), Expect = 9.612e-83
Identity = 115/170 (67.65%), Postives = 135/170 (79.41%), Query Frame = 1
Query:  112 VENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLNK 621
             +NPM+ +KI KL +NI VGESGDRLTRA KVLEQL+GQ PV SKAR TVR+FGIRRNEKI+V+ TVRG KAEEILE+GLKV EY+L+   FS  GNFGFGI EHIDLG+KYDPSIGI+GMDFYVV+ R G RV  R++ K  VG  H+ TKED   WF+Q YD  +L+K
Sbjct:    5 AQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADVLDK 174          
BLAST of 60S ribosomal protein L11 vs. Ensembl Nematostella
Match: EDO32603 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SUJ1])

HSP 1 Score: 265.003 bits (676), Expect = 2.001e-91
Identity = 127/166 (76.51%), Postives = 143/166 (86.14%), Query Frame = 1
Query:  124 MKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLNK 621
            MK+++I KL +NICVGESGDRLTRA KVLEQLTGQQPVFSKAR TVRSFGIRRNEKISV+ TVRG KAEEILEKGLKV EYEL K CFS  GNFGFGI EHIDLG+KYDPSIGIYGMDF+VVL R G  ++ R+ ++ +VG  HR+TK+DA KWFQQ YDG+LLNK
Sbjct:    1 MKELRIRKLVLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKISVHCTVRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFFVVLGRPGFNISKRKHKQGRVGFPHRLTKDDAMKWFQQKYDGVLLNK 166          
BLAST of 60S ribosomal protein L11 vs. Ensembl Medaka
Match: rpl11 (ribosomal protein L11 [Source:NCBI gene;Acc:101171178])

HSP 1 Score: 262.692 bits (670), Expect = 6.008e-90
Identity = 124/167 (74.25%), Postives = 146/167 (87.43%), Query Frame = 1
Query:  115 ENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            ENPMK+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A +++++ ++G +HRI KE+A +WFQQ YDGI+L
Sbjct:    9 ENPMKELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGRIGFRHRIRKEEAMRWFQQKYDGIIL 175          
BLAST of 60S ribosomal protein L11 vs. Ensembl Medaka
Match: rpl11 (ribosomal protein L11 [Source:NCBI gene;Acc:101171178])

HSP 1 Score: 262.307 bits (669), Expect = 8.271e-90
Identity = 124/167 (74.25%), Postives = 146/167 (87.43%), Query Frame = 1
Query:  115 ENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILL 615
            ENPMK+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A +++++ ++G +HRI KE+A +WFQQ YDGI+L
Sbjct:   11 ENPMKELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGRIGFRHRIRKEEAMRWFQQKYDGIIL 177          
BLAST of 60S ribosomal protein L11 vs. Ensembl Medaka
Match: rpl11 (ribosomal protein L11 [Source:NCBI gene;Acc:101171178])

HSP 1 Score: 251.906 bits (642), Expect = 2.533e-85
Identity = 119/163 (73.01%), Postives = 141/163 (86.50%), Query Frame = 1
Query:  115 ENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYD 603
            ENPMK+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR TVRSFGIRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G  +A +++++ ++G +HRI KE+A +WFQQ  +
Sbjct:    9 ENPMKELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGRIGFRHRIRKEEAMRWFQQKVE 171          
BLAST of 60S ribosomal protein L11 vs. Planmine SMEST
Match: SMESG000012475.1 (SMESG000012475.1)

HSP 1 Score: 370.933 bits (951), Expect = 8.897e-133
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1
Query:   82 MATENKVEAGVENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLNK 621
            MATENKVEAGVENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLNK
Sbjct:    1 MATENKVEAGVENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLNK 180          
BLAST of 60S ribosomal protein L11 vs. Planmine SMEST
Match: SMESG000012668.1 (SMESG000012668.1)

HSP 1 Score: 370.933 bits (951), Expect = 8.897e-133
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1
Query:   82 MATENKVEAGVENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLNK 621
            MATENKVEAGVENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLNK
Sbjct:    1 MATENKVEAGVENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQKSKVGAQHRITKEDAQKWFQQNYDGILLNK 180          
The following BLAST results are available for this feature:
BLAST of 60S ribosomal protein L11 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
RPL111.060e-8974.25ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL111.159e-8974.25ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL119.308e-8773.78ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC... [more]
back to top
BLAST of 60S ribosomal protein L11 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rpl-11.23.074e-9073.6860S ribosomal protein L11-2 [Source:UniProtKB/Swi... [more]
rpl-11.13.419e-8773.4960S ribosomal protein L11-1 [Source:UniProtKB/Swi... [more]
rpl-11.12.901e-1458.3360S ribosomal protein L11-1 [Source:UniProtKB/Swi... [more]
rpl-11.12.901e-1458.3360S ribosomal protein L11-1 [Source:UniProtKB/Swi... [more]
rpl-11.12.901e-1458.3360S ribosomal protein L11-1 [Source:UniProtKB/Swi... [more]
back to top
BLAST of 60S ribosomal protein L11 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
RpL112.195e-9275.15gene:FBgn0013325 transcript:FBtr0340533[more]
RpL112.195e-9275.15gene:FBgn0013325 transcript:FBtr0086533[more]
back to top
BLAST of 60S ribosomal protein L11 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl112.116e-9074.25ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-04... [more]
back to top
BLAST of 60S ribosomal protein L11 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rpl114.137e-9074.25ribosomal protein L11 [Source:NCBI gene;Acc:549394... [more]
rpl114.174e-8674.38ribosomal protein L11 [Source:NCBI gene;Acc:549394... [more]
rpl117.000e-8674.38ribosomal protein L11 [Source:NCBI gene;Acc:549394... [more]
rpl111.993e-8573.46ribosomal protein L11 [Source:NCBI gene;Acc:549394... [more]
rpl118.243e-8373.89ribosomal protein L11 [Source:NCBI gene;Acc:549394... [more]
back to top
BLAST of 60S ribosomal protein L11 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Rpl117.955e-9074.25ribosomal protein L11 [Source:MGI Symbol;Acc:MGI:1... [more]
Rpl112.415e-8670.76ribosomal protein L11 [Source:MGI Symbol;Acc:MGI:1... [more]
back to top
BLAST of 60S ribosomal protein L11 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P46222|RL11_DROME2.200e-9175.1560S ribosomal protein L11 OS=Drosophila melanogast... [more]
sp|Q19162|RL112_CAEEL3.910e-8973.6860S ribosomal protein L11-2 OS=Caenorhabditis eleg... [more]
sp|A8XJ93|RL112_CAEBR3.910e-8973.6860S ribosomal protein L11-2 OS=Caenorhabditis brig... [more]
sp|P62914|RL11_RAT5.565e-8974.2560S ribosomal protein L11 OS=Rattus norvegicus OX=... [more]
sp|Q9CXW4|RL11_MOUSE5.565e-8974.2560S ribosomal protein L11 OS=Mus musculus OX=10090... [more]
back to top
BLAST of 60S ribosomal protein L11 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A504Z3T34.132e-9679.17Ribosomal protein L11 OS=Fasciola gigantica OX=468... [more]
A0A2H1CUL21.379e-9578.57Ribosomal protein L11 OS=Fasciola hepatica OX=6192... [more]
A0A074ZUK01.187e-9478.57Ribosomal protein L5 OS=Opisthorchis viverrini OX=... [more]
A0A564Y4H42.590e-9477.38Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A0X3NRX74.628e-9478.5760S ribosomal protein L11 OS=Schistocephalus solid... [more]
back to top
BLAST of 60S ribosomal protein L11 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl111.141e-8973.65ribosomal protein L11 [Source:NCBI gene;Acc:103044... [more]
back to top
BLAST of 60S ribosomal protein L11 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSPMAT00000010472.11.614e-5970.73pep scaffold:Pmarinus_7.0:GL476970:103213:106958:-... [more]
back to top
BLAST of 60S ribosomal protein L11 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
RPL11A2.792e-8366.67Ribosomal 60S subunit protein L11A; expressed at t... [more]
RPL11B9.612e-8367.65Ribosomal 60S subunit protein L11B; expressed at h... [more]
back to top
BLAST of 60S ribosomal protein L11 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO326032.001e-9176.51Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of 60S ribosomal protein L11 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rpl116.008e-9074.25ribosomal protein L11 [Source:NCBI gene;Acc:101171... [more]
rpl118.271e-9074.25ribosomal protein L11 [Source:NCBI gene;Acc:101171... [more]
rpl112.533e-8573.01ribosomal protein L11 [Source:NCBI gene;Acc:101171... [more]
back to top
BLAST of 60S ribosomal protein L11 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000012475.18.897e-133100.00SMESG000012475.1[more]
SMESG000012668.18.897e-133100.00SMESG000012668.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30034152 ID=SMED30034152|Name=60S ribosomal protein L11|organism=Schmidtea mediterranea sexual|type=transcript|length=647bp
AAAAACACTAAATAATTTATATTTCAAATTTGTTTAAATTCTAATATCAC
ATAGAAATTGAATTTTTCGAAAATTATAAAAATGGCGACTGAAAATAAAG
TTGAAGCTGGGGTTGAAAATCCAATGAAGAAAATTAAAATTCATAAACTT
TGCGTAAATATTTGCGTTGGTGAATCTGGTGACAGATTGACTCGTGCTGG
TAAAGTTTTAGAACAGTTGACTGGACAACAACCTGTTTTCAGCAAAGCAC
GTTTAACTGTTCGTTCATTTGGTATTAGAAGAAATGAAAAAATTTCTGTT
TATGCCACAGTACGAGGCAAAAAAGCTGAAGAAATTTTAGAAAAAGGTTT
GAAGGTTTTAGAATACGAATTGAAGAAATCTTGCTTCAGTCAAGAAGGAA
ACTTTGGTTTCGGTATTACCGAACACATTGACTTGGGTTTGAAATACGAT
CCATCAATCGGTATTTATGGTATGGATTTTTATGTTGTTTTGACTCGTGC
TGGACGTCGTGTTGCATATCGTCGTCAACAGAAATCAAAGGTTGGTGCTC
AACACAGAATCACTAAAGAAGATGCCCAGAAATGGTTTCAACAAAATTAT
GATGGTATTTTATTGAACAAATAATTTGTTGAATAAATTTGGATTTC
back to top

protein sequence of SMED30034152-orf-1

>SMED30034152-orf-1 ID=SMED30034152-orf-1|Name=SMED30034152-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=181bp
MATENKVEAGVENPMKKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQ
PVFSKARLTVRSFGIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKS
CFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLTRAGRRVAYRRQQ
KSKVGAQHRITKEDAQKWFQQNYDGILLNK*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000039gamma neoblast
PLANA:0000429neoblast
PLANA:0002032epidermal cell
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR002132Ribosomal_L5
IPR031309Ribosomal_L5_C
IPR031310Ribosomal_L5_N
IPR022803Ribosomal_L5_dom_sf
IPR020929Ribosomal_L5_CS
Vocabulary: biological process
TermDefinition
GO:0006412translation
GO:0000027ribosomal large subunit assembly
GO:0002181cytoplasmic translation
GO:0019233sensory perception of pain
GO:0051298centrosome duplication
Vocabulary: cellular component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0000228nuclear chromosome
GO:0005703polytene chromosome puff
GO:0005730nucleolus
GO:0005737cytoplasm
GO:0022625cytosolic large ribosomal subunit
GO:0022626cytosolic ribosome
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
GO:0005515protein binding
GO:0019843rRNA binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031310Ribosomal protein L5, N-terminalPFAMPF00281Ribosomal_L5coord: 13..66
e-value: 3.0E-20
score: 72.3
IPR022803Ribosomal protein L5 domain superfamilyGENE3DG3DSA:3.30.1440.10coord: 5..180
e-value: 3.4E-81
score: 273.2
IPR022803Ribosomal protein L5 domain superfamilySUPERFAMILYSSF55282RL5-likecoord: 13..176
IPR002132Ribosomal protein L5PIRSFPIRSF002161RPL5p_RPL5a_RPL11e_RPL5ocoord: 2..175
e-value: 1.1E-42
score: 143.2
IPR002132Ribosomal protein L5PANTHERPTHR1199460S RIBOSOMAL PROTEIN L11-RELATEDcoord: 9..179
IPR031309Ribosomal protein L5, C-terminalPFAMPF00673Ribosomal_L5_Ccoord: 70..165
e-value: 3.1E-20
score: 72.1
NoneNo IPR availablePANTHERPTHR11994:SF8RIBOSOMAL PROTEIN L11coord: 9..179
IPR020929Ribosomal protein L5, conserved sitePROSITEPS00358RIBOSOMAL_L5coord: 43..59