Myb-like domain-containing protein

Overview
NameMyb-like domain-containing protein
Smed IDSMED30034140
Length (bp)1918
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Myb-like domain-containing protein (SMED30034140) t-SNE clustered cells

Violin plots show distribution of expression levels for Myb-like domain-containing protein (SMED30034140) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Myb-like domain-containing protein (SMED30034140) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Myb-like domain-containing protein (SMED30034140) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30034140

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30034140SMESG000019869.1 SmedASXL_014362SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30034140SMESG000019869.1 SmedASXL_014362SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30034140SMESG000019869.1 dd_Smed_v4_8671_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30034140SMESG000019869.1 dd_Smed_v4_8671_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
neoblastSMED30034140SMESG000019869.1 dd_Smed_v4_8671_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30034140SMESG000019869.1 dd_Smed_v4_8671_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30034140SMESG000019869.1 dd_Smed_v6_8671_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
head regionSMED30034140SMESG000019869.1 OX_Smed_1.0.13402ox_Smed_v2PMID:24238224
Kao et al., 2013		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Myb-like domain-containing protein vs. TrEMBL
Match: A0A0X3Q4M7 (Myb/SANT-like DNA-binding domain OS=Schistocephalus solidus OX=70667 GN=TR83036 PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.962e-29
Identity = 59/100 (59.00%), Postives = 68/100 (68.00%), Query Frame = 3 
Query:  213 SDKKVHWNCKYVQLLLDCVESRIHEFKNKSIHKKVWDDIGKEMQVYGFSTEHCYNKWKNLRRDVRMYAINPNKATKNQETLNRVKKLISTICPNFDPTAV 512
            +DKKVHW  + VQ LLDCVE  +HEF  +  HK VW  IG EM+  GFSTEHCYNKWKNLRRDVR+   NP KA +N   L RV +LI  I PN D T +
Sbjct:   91 TDKKVHWTTRNVQALLDCVEEHLHEFNVQKKHKAVWQAIGAEMEPLGFSTEHCYNKWKNLRRDVRLLVNNPMKAVRNASILRRVARLILVIYPNVDATTM 190
[Close]
BLAST of Myb-like domain-containing protein vs. TrEMBL
Match: A0A3P7ENA6 (Myb-like domain-containing protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS13906 PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.466e-29
Identity = 59/100 (59.00%), Postives = 68/100 (68.00%), Query Frame = 3 
Query:  213 SDKKVHWNCKYVQLLLDCVESRIHEFKNKSIHKKVWDDIGKEMQVYGFSTEHCYNKWKNLRRDVRMYAINPNKATKNQETLNRVKKLISTICPNFDPTAV 512
            +DKKVHW  + VQ LLDCVE  +HEF  +  HK VW  IG EM+  GFSTEHCYNKWKNLRRDVR+   NP KA +N   L RV +LI  I PN D T +
Sbjct:  102 TDKKVHWTTRNVQALLDCVEEHLHEFNVQKKHKAVWQAIGAEMEPLGFSTEHCYNKWKNLRRDVRLLVNNPMKAVRNASILRRVARLILVIYPNVDATTM 201
[Close]
BLAST of Myb-like domain-containing protein vs. TrEMBL
Match: A0A183TBQ8 (Myb/SANT-like DNA-binding domain OS=Schistocephalus solidus OX=70667 PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.466e-29
Identity = 59/100 (59.00%), Postives = 68/100 (68.00%), Query Frame = 3 
Query:  213 SDKKVHWNCKYVQLLLDCVESRIHEFKNKSIHKKVWDDIGKEMQVYGFSTEHCYNKWKNLRRDVRMYAINPNKATKNQETLNRVKKLISTICPNFDPTAV 512
            +DKKVHW  + VQ LLDCVE  +HEF  +  HK VW  IG EM+  GFSTEHCYNKWKNLRRDVR+   NP KA +N   L RV +LI  I PN D T +
Sbjct:  102 TDKKVHWTTRNVQALLDCVEEHLHEFNVQKKHKAVWQAIGAEMEPLGFSTEHCYNKWKNLRRDVRLLVNNPMKAVRNASILRRVARLILVIYPNVDATTM 201
[Close]
BLAST of Myb-like domain-containing protein vs. TrEMBL
Match: A0A3P7LJJ8 (Myb-like domain-containing protein OS=Dibothriocephalus latus OX=60516 GN=DILT_LOCUS7828 PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.763e-29
Identity = 59/100 (59.00%), Postives = 68/100 (68.00%), Query Frame = 3 
Query:  213 SDKKVHWNCKYVQLLLDCVESRIHEFKNKSIHKKVWDDIGKEMQVYGFSTEHCYNKWKNLRRDVRMYAINPNKATKNQETLNRVKKLISTICPNFDPTAV 512
            +DKKVHW  + VQ LLDCVE  +HEF  +  HK VW  IG EM+  GFSTEHCYNKWKNLRRDVR+   NP KA +N   L RV +LI  I PN D T +
Sbjct:   88 TDKKVHWTTRNVQALLDCVEEHLHEFNVQKKHKAVWQAIGAEMEPLGFSTEHCYNKWKNLRRDVRLLVNNPMKAVRNASILRRVARLILVIYPNVDATTM 187
[Close]
BLAST of Myb-like domain-containing protein vs. TrEMBL
Match: A0A0R3U635 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS2213 PE=4 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.587e-28
Identity = 57/100 (57.00%), Postives = 68/100 (68.00%), Query Frame = 3 
Query:  213 SDKKVHWNCKYVQLLLDCVESRIHEFKNKSIHKKVWDDIGKEMQVYGFSTEHCYNKWKNLRRDVRMYAINPNKATKNQETLNRVKKLISTICPNFDPTAV 512
             DKKVHW  ++VQLLLD VE  +HEF  +  HK VW  IG EM+ YGF+TEHCYNKWKNLRRDVR+   NP K  +N   L +V +LI  I PN D T +
Sbjct:   88 GDKKVHWTTRHVQLLLDRVEEHLHEFNVQKKHKAVWQAIGAEMEPYGFTTEHCYNKWKNLRRDVRLLVNNPMKVVRNASILRQVARLILVIYPNVDATTM 187
[Close]
BLAST of Myb-like domain-containing protein vs. Planmine SMEST
Match: SMESG000019869.1 (SMESG000019869.1)

HSP 1 Score: 601.668 bits (1550), Expect = 0.000e+0
Identity = 355/357 (99.44%), Postives = 355/357 (99.44%), Query Frame = 3 
Query:   81 MNEVAGELTXXXXXXXXXXSSKLEFVSASSSDIGTTDMQEKLVGSDKKVHWNCKYVQLLLDCVESRIHEFKNKSIHKKVWDDIGKEMQVYGFSTEHCYNKWKNLRRDVRMYAINPNKATKNQETLNRVKKLISTICPNFDPTAVYKKSTKSPNKHSEESSNXXXXXXXXXXXXXXXXXDIMTPVNNENMDIQDGEAGVTTXXXXXXXXXXXXXXXXXXXXKQQQHNPGALLFHPNIAPNLFLNTDKDVYKDSNLKPLVSNIQCLQPKPDNSCNNKKPSILDDSADHNNRNSSSNYSTWPYELYDLLVSFRTEEVKQAHSIEQLIRQINEIRDSSVRRMNTIQQLMNLANLLINSKVS 1151
            MNEVAGELTIINNNN NRISSKLEFVSASSSDIGTTDMQEKLVGSDKKVHWNCKYVQLLLDCVESRIHEFKNKSIHKKVWDDIGKEMQVYGFSTEHCYNKWKNLRRDVRMYAINPNKATKNQETLNRVKKLISTICPNFDPTAVYKKSTKSPNKHSEESSNSLEPLTKLLTPPTSPFSDIMTPVNNENMDIQDGE GVTTDNSLLDMKLSLSSDVYSYLLKQQQHNPGALLFHPNIAPNLFLNTDKDVYKDSNLKPLVSNIQCLQPKPDNSCNNKKPSILDDSADHNNRNSSSNYSTWPYELYDLLVSFRTEEVKQAHSIEQLIRQINEIRDSSVRRMNTIQQLMNLANLLINSKVS
Sbjct:    1 MNEVAGELTIINNNNDNRISSKLEFVSASSSDIGTTDMQEKLVGSDKKVHWNCKYVQLLLDCVESRIHEFKNKSIHKKVWDDIGKEMQVYGFSTEHCYNKWKNLRRDVRMYAINPNKATKNQETLNRVKKLISTICPNFDPTAVYKKSTKSPNKHSEESSNSLEPLTKLLTPPTSPFSDIMTPVNNENMDIQDGEGGVTTDNSLLDMKLSLSSDVYSYLLKQQQHNPGALLFHPNIAPNLFLNTDKDVYKDSNLKPLVSNIQCLQPKPDNSCNNKKPSILDDSADHNNRNSSSNYSTWPYELYDLLVSFRTEEVKQAHSIEQLIRQINEIRDSSVRRMNTIQQLMNLANLLINSKVS 357
[Close]
BLAST of Myb-like domain-containing protein vs. Planmine SMEST
Match: SMESG000016880.1 (SMESG000016880.1)

HSP 1 Score: 102.834 bits (255), Expect = 7.347e-23
Identity = 51/116 (43.97%), Postives = 69/116 (59.48%), Query Frame = 3 
Query:  213 SDKKVHWNCKYVQLLLDCVESRIHEFKNKSIHKKVWDDIGKEMQVYG-FSTEHCYNKWKNLRRDVRMYAIN---PNKATKNQETLNRVKKLISTIC-------------PNFDPTA 509
             +KKVHWN   V  LLDC+E R+ +F+ KS+HK VW  IGKEM   G FS EHCYNKWKNLRRD+R+++        + +N   + RV+++++ I              PNFD  A
Sbjct:   82 GEKKVHWNPSQVHALLDCIEKRMSDFRRKSVHKSVWLAIGKEMSEQGEFSVEHCYNKWKNLRRDIRLFSSTNAMQKLSIRNTYIMERVQRMVNEIGYEGSSRKSSSPISPNFDLVA 197

HSP 2 Score: 59.6918 bits (143), Expect = 3.787e-9
Identity = 26/59 (44.07%), Postives = 44/59 (74.58%), Query Frame = 3 
Query:  969 TWPYELYDLLVSFRTEEVKQAHSIEQLIRQINEIRDSSVRRMNTIQQLMNLANLLINSK 1145
            +WP++LY+LL SFR EE +Q   ++Q++  +  +++S+ RR++TI QL++LA LLI  K
Sbjct:  433 SWPHQLYELLHSFRDEESRQMARLDQIVGYVQVMQESTKRRLSTINQLISLAGLLIPQK 491
The following BLAST results are available for this feature:
BLAST of Myb-like domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Myb-like domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Myb-like domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Myb-like domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Myb-like domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Myb-like domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Myb-like domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Myb-like domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0X3Q4M71.962e-2959.00Myb/SANT-like DNA-binding domain OS=Schistocephalu... [more]
A0A3P7ENA62.466e-2959.00Myb-like domain-containing protein OS=Schistocepha... [more]
A0A183TBQ82.466e-2959.00Myb/SANT-like DNA-binding domain OS=Schistocephalu... [more]
A0A3P7LJJ83.763e-2959.00Myb-like domain-containing protein OS=Dibothriocep... [more]
A0A0R3U6351.587e-2857.00Uncharacterized protein OS=Mesocestoides corti OX=... [more]
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BLAST of Myb-like domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Myb-like domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Myb-like domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Myb-like domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Myb-like domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Myb-like domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000019869.10.000e+099.44SMESG000019869.1[more]
SMESG000016880.17.347e-2343.97SMESG000016880.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30034140 ID=SMED30034140|Name=Myb-like domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1918bp
GAGAAATAAGTTTGTTTTAAACAATCTCCATGTTTAGGTTGTCATATAAA
ATTGTATTTTACATTATTATTCCTTTGCAAATGAATGAAGTTGCCGGCGA
ATTGACAATAATAAATAATAATAATGTCAACCGAATATCATCAAAATTAG
AGTTTGTTTCAGCATCTTCTTCAGATATTGGTACGACAGATATGCAAGAG
AAGCTTGTAGGTTCCGACAAAAAAGTGCATTGGAATTGTAAATATGTGCA
ATTGTTGTTAGATTGCGTGGAGAGTAGGATACACGAGTTCAAAAATAAAT
CTATTCATAAAAAGGTATGGGATGATATTGGGAAAGAAATGCAAGTTTAT
GGATTTTCTACTGAGCATTGTTATAATAAATGGAAAAATCTTCGCCGAGA
TGTACGTATGTATGCCATTAATCCCAATAAAGCCACTAAAAATCAAGAAA
CGTTAAATCGAGTGAAGAAATTAATTTCAACAATTTGTCCAAATTTCGAT
CCAACTGCAGTTTATAAAAAAAGCACAAAAAGTCCAAATAAACACTCTGA
AGAGTCATCTAATTCGCTTGAGCCTTTGACAAAATTATTGACTCCTCCAA
CTAGTCCATTTTCAGACATCATGACACCAGTAAATAATGAAAACATGGAT
ATACAAGATGGAGAAGCGGGCGTTACCACAGACAATAGCCTTTTGGACAT
GAAATTGAGTCTCAGTAGTGATGTGTATTCATATCTTCTCAAGCAGCAGC
AGCATAATCCTGGTGCACTTTTGTTCCACCCAAATATCGCCCCCAATCTC
TTCCTCAATACTGACAAAGACGTTTACAAGGATTCCAATTTAAAGCCTCT
CGTATCGAATATTCAGTGCCTTCAACCCAAACCCGACAACTCGTGCAATA
ATAAAAAACCGTCAATTCTCGACGATTCCGCAGATCACAATAACAGGAAT
TCGAGTTCAAATTATTCCACATGGCCTTATGAGCTCTATGATTTACTAGT
CAGCTTTAGAACCGAGGAGGTTAAACAAGCCCATTCCATAGAGCAATTGA
TCCGTCAAATAAATGAGATCAGAGATTCTTCAGTTCGTCGGATGAACACA
ATACAGCAATTGATGAATCTGGCAAATTTATTGATTAATTCCAAGGTGTC
GTAGGTGCCCGTGATCCGTTTTGAGATTCTAGCTGTTGTTTCTAATCATG
TAGACAGCATTGATTTATCTATTTTATCATTATTATTATCATTATCAATA
TTACCGTCGTCATGATAATCATGATCTGCAATACTCTGTATGATCGATCC
AATAATCCCAACTTCCTTCTCTCATTCTATCACATTCCACACAAACACAC
AAATCAATACTGCTGCTGTTGTTGTAGTGCAATCCAGTGCAACTCAGCAT
ATCCACTGTGCAATTTTTCTATTTTGAATCGATTGTTAGTTTCCTAGCAT
AATCCATGATGATTTAATCAATAAGGCTGTTATTCTAGTGTGCGTATCCA
TGACAACTACTCTATAAATTCTGCAACTGCCGCTTGACAATAGTCATTCC
ACTTTACACTATATTCCAAGATCACGATTATTTTTCTCGACTATTCTGAT
GTTGCCTTTATTGTTTCGTTGCATATCAGCTGCATTTCAACACAAATCGT
GCAATTTTTCTATTTCAGTTTTTGATGCATGTATTTTACCTGGCAAATGT
TTTAAATTTTATTTATTATTATTATTACTACTATTACAATTATCGATATT
ATATCAACACTCATTATTACGTTTGTGTGTACAATGAGCGCCTGCATTTC
GTCACTGTATTATTATCAATATTTATTATTATTATTAATTTATTATCAAT
ATGCCCAGTAAGTATCAGTGTGGTATTTTCTCTATGTTGTGTAAGTGTCT
TATTTTTTTAACTCGTCA
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protein sequence of SMED30034140-orf-1

>SMED30034140-orf-1 ID=SMED30034140-orf-1|Name=SMED30034140-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=375bp
MFRLSYKIVFYIIIPLQMNEVAGELTIINNNNVNRISSKLEFVSASSSDI
GTTDMQEKLVGSDKKVHWNCKYVQLLLDCVESRIHEFKNKSIHKKVWDDI
GKEMQVYGFSTEHCYNKWKNLRRDVRMYAINPNKATKNQETLNRVKKLIS
TICPNFDPTAVYKKSTKSPNKHSEESSNSLEPLTKLLTPPTSPFSDIMTP
VNNENMDIQDGEAGVTTDNSLLDMKLSLSSDVYSYLLKQQQHNPGALLFH
PNIAPNLFLNTDKDVYKDSNLKPLVSNIQCLQPKPDNSCNNKKPSILDDS
ADHNNRNSSSNYSTWPYELYDLLVSFRTEEVKQAHSIEQLIRQINEIRDS
SVRRMNTIQQLMNLANLLINSKVS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13837Myb_DNA-bind_4coord: 66..136
e-value: 2.2E-6
score: 27.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..185