TNF receptor-associated factor 3
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30034031 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 1
Homology
BLAST of TNF receptor-associated factor 3 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 62.7734 bits (151), Expect = 5.377e-9 Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF I +G++D LL WP K K FK D + + +PT E N+A+G P F Q +L Y+KDD I+IK+ V Sbjct: 388 LSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 477
BLAST of TNF receptor-associated factor 3 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 62.7734 bits (151), Expect = 5.952e-9 Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF I +G++D LL WP K K FK D + + +PT E N+A+G P F Q +L Y+KDD I+IK+ V Sbjct: 471 LSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 560
BLAST of TNF receptor-associated factor 3 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 62.7734 bits (151), Expect = 5.952e-9 Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF I +G++D LL WP K K FK D + + +PT E N+A+G P F Q +L Y+KDD I+IK+ V Sbjct: 471 LSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 560
BLAST of TNF receptor-associated factor 3 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 62.7734 bits (151), Expect = 6.291e-9 Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF I +G++D LL WP K K FK D + + +PT E N+A+G P F Q +L Y+KDD I+IK+ V Sbjct: 446 LSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 535
BLAST of TNF receptor-associated factor 3 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 62.7734 bits (151), Expect = 6.291e-9 Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF I +G++D LL WP K K FK D + + +PT E N+A+G P F Q +L Y+KDD I+IK+ V Sbjct: 446 LSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 535
BLAST of TNF receptor-associated factor 3 vs. Ensembl Zebrafish
Match: traf3 (TNF receptor-associated factor 3 [Source:ZFIN;Acc:ZDB-GENE-040801-257]) HSP 1 Score: 65.0846 bits (157), Expect = 7.058e-10 Identity = 31/90 (34.44%), Postives = 47/90 (52.22%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF + +G++D LL+WP K K FK D + + +PT E N+A+G P F Q +L Y+KDD I+IK+ V Sbjct: 476 LSLFFVVMRGEYDALLQWPFKQKVTLMLMDQGPARKHLGDAFKPDPSSSSFRRPTGEMNIASGCPLFVAQTVLENGTYIKDDTIFIKVTV 565
BLAST of TNF receptor-associated factor 3 vs. Ensembl Zebrafish
Match: traf1 (TNF receptor-associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-071120-4]) HSP 1 Score: 56.6102 bits (135), Expect = 3.170e-7 Identity = 33/91 (36.26%), Postives = 47/91 (51.65%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILR--QAAYVKDDNIYIKINV 4902 + +FF I KG++D +L WP K+K F+ D + + QP ++ N+A+G P FF LR + AY KDD IYIK V Sbjct: 457 ISLFFVIMKGEYDPILSWPFKHKVTFFLLDQNQREHVIDAFRPDLSSMSFHQPVSDMNVASGCPLFFPLKKLRSPKHAYCKDDTIYIKCVV 547
BLAST of TNF receptor-associated factor 3 vs. Ensembl Xenopus
Match: ssh2 (slingshot protein phosphatase 2 [Source:Xenbase;Acc:XB-GENE-993093]) HSP 1 Score: 62.3882 bits (150), Expect = 6.984e-9 Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF I +G++D LL WP K K FK D + + +PT E N+A+G P F Q +L Y+KDD I+IK+ V Sbjct: 439 LSLFFVIMRGEYDALLPWPFKQKVSLMLMDQGPSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 528
BLAST of TNF receptor-associated factor 3 vs. Ensembl Xenopus
Match: ssh2 (slingshot protein phosphatase 2 [Source:Xenbase;Acc:XB-GENE-993093]) HSP 1 Score: 62.3882 bits (150), Expect = 7.268e-9 Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF I +G++D LL WP K K FK D + + +PT E N+A+G P F Q +L Y+KDD I+IK+ V Sbjct: 464 LSLFFVIMRGEYDALLPWPFKQKVSLMLMDQGPSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 553
BLAST of TNF receptor-associated factor 3 vs. Ensembl Mouse
Match: Traf3 (TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041]) HSP 1 Score: 62.7734 bits (151), Expect = 4.968e-9 Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF I +G++D LL WP K K FK D + + +PT E N+A+G P F Q +L Y+KDD I+IK+ V Sbjct: 470 LSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 559
BLAST of TNF receptor-associated factor 3 vs. Ensembl Mouse
Match: Traf3 (TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041]) HSP 1 Score: 62.3882 bits (150), Expect = 5.119e-9 Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF I +G++D LL WP K K FK D + + +PT E N+A+G P F Q +L Y+KDD I+IK+ V Sbjct: 445 LSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 534
BLAST of TNF receptor-associated factor 3 vs. Ensembl Mouse
Match: Traf3 (TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041]) HSP 1 Score: 62.3882 bits (150), Expect = 5.119e-9 Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF I +G++D LL WP K K FK D + + +PT E N+A+G P F Q +L Y+KDD I+IK+ V Sbjct: 445 LSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 534
BLAST of TNF receptor-associated factor 3 vs. Ensembl Mouse
Match: Traf5 (TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548]) HSP 1 Score: 55.0694 bits (131), Expect = 2.843e-7 Identity = 26/92 (28.26%), Postives = 47/92 (51.09%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQA--AYVKDDNIYIKINV 4902 + ++F + +G+FD LL+WP + + TFK+D + + +P E N+A+G P F L + Y+KDD +++K+ V Sbjct: 151 LSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAV 242
BLAST of TNF receptor-associated factor 3 vs. Ensembl Mouse
Match: Traf5 (TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548]) HSP 1 Score: 55.0694 bits (131), Expect = 2.843e-7 Identity = 26/92 (28.26%), Postives = 47/92 (51.09%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQA--AYVKDDNIYIKINV 4902 + ++F + +G+FD LL+WP + + TFK+D + + +P E N+A+G P F L + Y+KDD +++K+ V Sbjct: 151 LSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAV 242
BLAST of TNF receptor-associated factor 3 vs. UniProt/SwissProt
Match: sp|Q13114|TRAF3_HUMAN (TNF receptor-associated factor 3 OS=Homo sapiens OX=9606 GN=TRAF3 PE=1 SV=2) HSP 1 Score: 62.7734 bits (151), Expect = 2.858e-8 Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF I +G++D LL WP K K FK D + + +PT E N+A+G P F Q +L Y+KDD I+IK+ V Sbjct: 471 LSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 560
BLAST of TNF receptor-associated factor 3 vs. UniProt/SwissProt
Match: sp|Q60803|TRAF3_MOUSE (TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2) HSP 1 Score: 62.7734 bits (151), Expect = 3.475e-8 Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF I +G++D LL WP K K FK D + + +PT E N+A+G P F Q +L Y+KDD I+IK+ V Sbjct: 470 LSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 559
BLAST of TNF receptor-associated factor 3 vs. UniProt/SwissProt
Match: sp|O00463|TRAF5_HUMAN (TNF receptor-associated factor 5 OS=Homo sapiens OX=9606 GN=TRAF5 PE=1 SV=2) HSP 1 Score: 56.9954 bits (136), Expect = 1.834e-6 Identity = 28/91 (30.77%), Postives = 48/91 (52.75%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQA--AYVKDDNIYIKINV 4902 + ++F + +G+FD LL+WP + + TFK D + + +P E N+A+G P F +L A AY+KDD +++K+ V Sbjct: 459 LSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNIMETFKPDPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNAYIKDDTLFLKVAV 549
BLAST of TNF receptor-associated factor 3 vs. TrEMBL
Match: A0A3Q3A2F5 (MATH domain-containing protein OS=Kryptolebias marmoratus OX=37003 PE=4 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.637e-9 Identity = 30/82 (36.59%), Postives = 46/82 (56.10%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNKT-----------FKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKI 4896 + +FF + +G++D LL WP K KT FK D + + +P E N+A+G P F Q +L +Y+KDD I+IK+ Sbjct: 52 LSLFFVVMRGEYDALLPWPFKQKTQTFTLKHLGDAFKPDPNSSSFRRPVAEMNIASGCPLFVSQSVLETGSYIKDDTIFIKV 133
BLAST of TNF receptor-associated factor 3 vs. TrEMBL
Match: H2YYB2 (MATH domain-containing protein OS=Ciona savignyi OX=51511 PE=4 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.375e-8 Identity = 30/90 (33.33%), Postives = 51/90 (56.67%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF + KG++D LL WP + K TF+ D + + QPT++ N+A+G P F +++ ++YVK+D IYI+I+V Sbjct: 61 MSLFFVVMKGEYDALLPWPFRQKVTLMLLDQGVDRRHLSDTFRPDPTSSSFKQPTSDMNIASGCPLFVAHSVIKGSSYVKEDTIYIRIHV 150
BLAST of TNF receptor-associated factor 3 vs. TrEMBL
Match: H2YBM2 (MATH domain-containing protein OS=Ciona savignyi OX=51511 PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 3.505e-8 Identity = 28/88 (31.82%), Postives = 51/88 (57.95%), Query Frame = 1 Query: 4690 IFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 +FF + KG++D LL WP + K TF+ D + + QPT++ N+A+G P F ++++ ++YVK+D I+++I+V Sbjct: 56 LFFVVMKGEYDALLPWPFRQKVTLMLLDQGMDRRHLSDTFRPDPTSSSFKQPTSDMNIASGCPLFVAHNVIKGSSYVKEDTIFLRIHV 143
BLAST of TNF receptor-associated factor 3 vs. TrEMBL
Match: A0A3B1IJ18 (TNF receptor associated factor 3 OS=Astyanax mexicanus OX=7994 GN=TRAF3 PE=4 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 9.122e-8 Identity = 31/90 (34.44%), Postives = 46/90 (51.11%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF + +G++D LL WP K K FK D + + +PT E N+A+G P F Q +L Y+KDD I+IK+ V Sbjct: 59 LSLFFVVMRGEYDALLPWPFKQKVTLMLMDQGPARKHLGDAFKPDPNSSSFRRPTGEMNIASGCPLFVAQTVLENGTYIKDDTIFIKVTV 148
BLAST of TNF receptor-associated factor 3 vs. TrEMBL
Match: H2YBL7 (MATH domain-containing protein OS=Ciona savignyi OX=51511 PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 2.278e-7 Identity = 28/90 (31.11%), Postives = 51/90 (56.67%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF + KG++D LL WP + K TFK D + + +PT++ N+A+G P F +++ ++YVK+D I+++I+V Sbjct: 61 MSLFFVVMKGEYDALLPWPFRQKVTLMLLDQGMDRRHLSDTFKPDPTSSSFKKPTSDMNIASGCPLFVAHNVIEGSSYVKEDTIFLRIHV 150
BLAST of TNF receptor-associated factor 3 vs. Ensembl Cavefish
Match: ENSAMXT00000035169.1 (pep primary_assembly:Astyanax_mexicanus-2.0:9:3354744:3362219:1 gene:ENSAMXG00000029095.1 transcript:ENSAMXT00000035169.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 64.3142 bits (155), Expect = 3.455e-11 Identity = 31/90 (34.44%), Postives = 46/90 (51.11%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF + +G++D LL WP K K FK D + + +PT E N+A+G P F Q +L Y+KDD I+IK+ V Sbjct: 59 LSLFFVVMRGEYDALLPWPFKQKVTLMLMDQGPARKHLGDAFKPDPNSSSFRRPTGEMNIASGCPLFVAQTVLENGTYIKDDTIFIKVTV 148
BLAST of TNF receptor-associated factor 3 vs. Ensembl Cavefish
Match: traf1 (TNF receptor-associated factor 1-like [Source:NCBI gene;Acc:103045252]) HSP 1 Score: 62.3882 bits (150), Expect = 4.498e-9 Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILR--QAAYVKDDNIYIKINVIKDY 4914 + +FF I KGD+D LL WP K K F+ D R+ + +P +E N+A+G P FF LR + AYVKDD ++IK V Y Sbjct: 424 ISLFFVIMKGDYDPLLSWPFKQKVTFFLIDQNQREHVVDAFRPDLRSASFQRPVSEMNVASGCPLFFPLSKLRSPKHAYVKDDTLFIKCVVDPSY 518
BLAST of TNF receptor-associated factor 3 vs. Ensembl Cavefish
Match: traf1 (TNF receptor-associated factor 1-like [Source:NCBI gene;Acc:103045252]) HSP 1 Score: 62.003 bits (149), Expect = 5.560e-9 Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILR--QAAYVKDDNIYIKINVIKDY 4914 + +FF I KGD+D LL WP K K F+ D R+ + +P +E N+A+G P FF LR + AYVKDD ++IK V Y Sbjct: 447 ISLFFVIMKGDYDPLLSWPFKQKVTFFLIDQNQREHVVDAFRPDLRSASFQRPVSEMNVASGCPLFFPLSKLRSPKHAYVKDDTLFIKCVVDPSY 541
BLAST of TNF receptor-associated factor 3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000074.1 (pep scaffold:Pmarinus_7.0:GL482142:165593:173010:-1 gene:ENSPMAG00000000066.1 transcript:ENSPMAT00000000074.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 58.9214 bits (141), Expect = 1.057e-8 Identity = 28/90 (31.11%), Postives = 48/90 (53.33%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF + +G++D LL WP + + TFK D + + +PT++ N+A+G P F L A+Y++DD I+IK+ V Sbjct: 380 LSLFFVVMRGEYDALLPWPFRQRVTLTLLDQGAARRQLSDTFKPDPASSSFRRPTSDMNIASGCPLFVSHVALESASYLQDDTIFIKVVV 469
BLAST of TNF receptor-associated factor 3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002130.1 (pep scaffold:Pmarinus_7.0:GL484662:8457:12718:-1 gene:ENSPMAG00000001936.1 transcript:ENSPMAT00000002130.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 50.0618 bits (118), Expect = 4.558e-6 Identity = 23/90 (25.56%), Postives = 45/90 (50.00%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF + +G++D LLEWP + + TF D + + +P + N+A+G P F L ++Y+ DD +++++ V Sbjct: 323 LSLFFVVMRGEYDALLEWPFRRRVTLSLLDQGAARRHLSDTFTPDPASGSFRRPDGDMNVASGCPLFVSHVALEGSSYLVDDTVFVRVVV 412
BLAST of TNF receptor-associated factor 3 vs. Ensembl Nematostella
Match: EDO38873 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SBN4]) HSP 1 Score: 61.6178 bits (148), Expect = 2.386e-9 Identity = 32/94 (34.04%), Postives = 48/94 (51.06%), Query Frame = 1 Query: 4675 NFVVRIFFQICKGDFDELLEWPLKNK----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINVIK 4908 N V +FF I +G+FD LL WP + K F+ D + + +P E N+A+G P F + L Q AY++DD +++KI V K Sbjct: 385 NHHVSLFFVIMRGEFDALLRWPFRQKVTLMLLDQDNVEHVIDAFRPDPSSSSFQRPRAEMNIASGCPLFCSHEQLTQHAYIRDDTMFLKIIVDK 478
BLAST of TNF receptor-associated factor 3 vs. Ensembl Nematostella
Match: EDO49464 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RG36]) HSP 1 Score: 58.9214 bits (141), Expect = 1.923e-8 Identity = 30/89 (33.71%), Postives = 47/89 (52.81%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF + +G+FD LL WP + K TF+ D + + +PT+ N+A+G P F L+ AYV+DD ++IKI V Sbjct: 433 LSLFFVLMRGEFDALLPWPFRQKVTFKLLDQDRVHDIGDTFRPDPTSSSFKRPTSNMNIASGCPLFISHTNLQTRAYVRDDTMFIKIAV 521
BLAST of TNF receptor-associated factor 3 vs. Ensembl Nematostella
Match: EDO49545 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RGK7]) HSP 1 Score: 53.5286 bits (127), Expect = 7.575e-7 Identity = 33/94 (35.11%), Postives = 48/94 (51.06%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-TF----KSDQRNP----------------CYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + ++ I KGD+D LLEWP K K TF +S+++N + +PT +ENL G P F ++L YVKDD ++IK V Sbjct: 309 LSLYIIIMKGDYDALLEWPFKQKITFYLIDQSEKQNHRTHLLSPNRSLPNIKVVFNRPTVKENLGIGNPCFVPNEVLESGEYVKDDVMFIKAVV 402
BLAST of TNF receptor-associated factor 3 vs. Ensembl Medaka
Match: traf3 (TNF receptor associated factor 3 [Source:NCBI gene;Acc:101161601]) HSP 1 Score: 63.1586 bits (152), Expect = 1.764e-9 Identity = 30/90 (33.33%), Postives = 45/90 (50.00%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINV 4902 + +FF + +G++D LL WP K K FK D + + +P E N+A+G P F Q +L Y+KDD I+IK+ V Sbjct: 353 LSLFFVVMRGEYDALLPWPFKQKVTLMLMDQGPSRKHLGDAFKPDPSSSSFRRPVAEMNIASGCPLFVSQSVLESGTYIKDDTIFIKVTV 442
BLAST of TNF receptor-associated factor 3 vs. Ensembl Medaka
Match: ENSORLT00000001369.2 (TNF receptor-associated factor 5 [Source:NCBI gene;Acc:101170323]) HSP 1 Score: 52.373 bits (124), Expect = 6.199e-6 Identity = 31/95 (32.63%), Postives = 42/95 (44.21%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTE--ENLAAGGPAFFQQDILR---QAAYVKDDNIYIKINV 4902 + ++ + GDFD LL WP K F+ D N C+ QP E N+A G P F D L A YVKDD +++K+ V Sbjct: 483 LSLYVVLMPGDFDALLPWPFKQTVSLSVLDQSGARNHQSFNFRPDPTNTCFHQPAAESASNVAVGFPCFISLDALEAPGNAVYVKDDTLFVKVKV 577
BLAST of TNF receptor-associated factor 3 vs. Planmine SMEST
Match: SMESG000016682.1 (SMESG000016682.1) HSP 1 Score: 73.1738 bits (178), Expect = 8.859e-28 Identity = 38/78 (48.72%), Postives = 47/78 (60.26%), Query Frame = 1 Query: 4072 HPKICEMNEDKCELCGEIDIWKELETTL*NLIERQICDEYKNKCPN*FNMKESVTLTEHWETCSRKAIMCPLKLLNCK 4305 H KIC E+KCE CG ID W ++E N E QICD Y+ C N + K+ V L EHW CS K + CPL+L NC+ Sbjct: 1498 HHKICIKREEKCEFCGVIDEWIKIEMQHRNPKEEQICDRYEGVCANNCDKKDKVKLKEHWNECSGKPVKCPLELFNCQ 1575 HSP 2 Score: 46.2098 bits (108), Expect = 8.859e-28 Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 2 Query: 3740 HEFEERFMCCECKKLLIEASQTE**C*ICR*WAIKVIRKE-LKLPRLGKTTIKTLENTRPDHAANH*ISNLLVKC 3961 ++ +ER CC+CK+LLI A QT+ C IC I+VI + +K P +T + + T D A N I+NLLV+C Sbjct: 1381 NDIKERLKCCKCKELLIGARQTKCGCRICTDCTIEVIETQTIKCPGCDETIERDEDPTTMDKATNKEINNLLVQC 1455 HSP 3 Score: 42.743 bits (99), Expect = 8.859e-28 Identity = 22/93 (23.66%), Postives = 53/93 (56.99%), Query Frame = 3 Query: 4332 KHLKENNVEHLTTMIEAIEITAMSINDSKDNLKSHIVLIKEMLNAREYFKKLEEQMIQKTILIDRKLKEITIQQKKCEANMPTSEELTITPYV 4610 KH+ EN++EH M++ I + A + + + +I+E+L +R+ F+K + ++K + +++K++++T K+ E N + + P++ Sbjct: 1585 KHMMENSIEHTEIMMKTIGMLAWEVKSLRTENDAQKAIIREILESRKNFEKSQGDTLKKMVEMEKKMQQMTNNIKELETNNSIARKYLTAPFI 1677 HSP 4 Score: 23.0978 bits (48), Expect = 8.859e-28 Identity = 14/30 (46.67%), Postives = 16/30 (53.33%), Query Frame = 3 Query: 3972 GF*KETTNHQEVYELIEVKCKKCNDTITPK 4061 G KE NH E E+ C+KC TIT K Sbjct: 1464 GLMKEAENHANECEYNEILCEKCQ-TITTK 1492 HSP 5 Score: 75.0998 bits (183), Expect = 6.789e-13 Identity = 43/98 (43.88%), Postives = 65/98 (66.33%), Query Frame = 2 Query: 2180 TNVKSNEGQTPLMIAVAGYVSTTVLRK*IENGSLLRE-DNRSRNVLIYDMKSRFAT--KFIINNAAKKDTYVLCRTSRPLKEAIEKGQDETSKAIIEW 2464 +N+ + EGQTPLM AVA STTVLR+ ++ GS +E DN +VL Y +KSR A+ KFI +NA ++ ++ +T + L EAI+ QDE + +++W Sbjct: 547 SNIPNEEGQTPLMFAVAADASTTVLRELLKTGSSFKEKDNGGNSVLHYALKSRQASAIKFITSNATTREREMMGKTIQTLWEAIDAKQDEAAANLMKW 644 HSP 6 Score: 66.6254 bits (161), Expect = 2.815e-10 Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNKTF-----KSDQRNPCYI-------QPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKI 4896 + +F ++ +GD+DELL WP K + D RNP +PTT+ N A G P F+ Q LR ++++DN+YIK+ Sbjct: 1729 ISVFIRVGRGDYDELLTWPFKQNMILTMKGQEDYRNPIRTGNEPQMGRPTTDWNTAIGTPRFYPQQRLRGEGFLREDNLYIKL 1811 HSP 7 Score: 54.6842 bits (130), Expect = 1.267e-6 Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 2 Query: 1274 LRELMRTGSVLKEKHTGGKTVLAYAMKSKEASAIEFIKPN 1393 LREL++TGS KEK GG +VL YA+KS++ASAI+FI N Sbjct: 571 LRELLKTGSSFKEKDNGGNSVLHYALKSRQASAIKFITSN 610
BLAST of TNF receptor-associated factor 3 vs. Planmine SMEST
Match: SMESG000016682.1 (SMESG000016682.1) HSP 1 Score: 73.1738 bits (178), Expect = 8.930e-28 Identity = 38/78 (48.72%), Postives = 47/78 (60.26%), Query Frame = 1 Query: 4072 HPKICEMNEDKCELCGEIDIWKELETTL*NLIERQICDEYKNKCPN*FNMKESVTLTEHWETCSRKAIMCPLKLLNCK 4305 H KIC E+KCE CG ID W ++E N E QICD Y+ C N + K+ V L EHW CS K + CPL+L NC+ Sbjct: 1500 HHKICIKREEKCEFCGVIDEWIKIEMQHRNPKEEQICDRYEGVCANNCDKKDKVKLKEHWNECSGKPVKCPLELFNCQ 1577 HSP 2 Score: 46.2098 bits (108), Expect = 8.930e-28 Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 2 Query: 3740 HEFEERFMCCECKKLLIEASQTE**C*ICR*WAIKVIRKE-LKLPRLGKTTIKTLENTRPDHAANH*ISNLLVKC 3961 ++ +ER CC+CK+LLI A QT+ C IC I+VI + +K P +T + + T D A N I+NLLV+C Sbjct: 1383 NDIKERLKCCKCKELLIGARQTKCGCRICTDCTIEVIETQTIKCPGCDETIERDEDPTTMDKATNKEINNLLVQC 1457 HSP 3 Score: 42.743 bits (99), Expect = 8.930e-28 Identity = 22/93 (23.66%), Postives = 53/93 (56.99%), Query Frame = 3 Query: 4332 KHLKENNVEHLTTMIEAIEITAMSINDSKDNLKSHIVLIKEMLNAREYFKKLEEQMIQKTILIDRKLKEITIQQKKCEANMPTSEELTITPYV 4610 KH+ EN++EH M++ I + A + + + +I+E+L +R+ F+K + ++K + +++K++++T K+ E N + + P++ Sbjct: 1587 KHMMENSIEHTEIMMKTIGMLAWEVKSLRTENDAQKAIIREILESRKNFEKSQGDTLKKMVEMEKKMQQMTNNIKELETNNSIARKYLTAPFI 1679 HSP 4 Score: 23.0978 bits (48), Expect = 8.930e-28 Identity = 14/30 (46.67%), Postives = 16/30 (53.33%), Query Frame = 3 Query: 3972 GF*KETTNHQEVYELIEVKCKKCNDTITPK 4061 G KE NH E E+ C+KC TIT K Sbjct: 1466 GLMKEAENHANECEYNEILCEKCQ-TITTK 1494 HSP 5 Score: 75.0998 bits (183), Expect = 6.677e-13 Identity = 43/98 (43.88%), Postives = 65/98 (66.33%), Query Frame = 2 Query: 2180 TNVKSNEGQTPLMIAVAGYVSTTVLRK*IENGSLLRE-DNRSRNVLIYDMKSRFAT--KFIINNAAKKDTYVLCRTSRPLKEAIEKGQDETSKAIIEW 2464 +N+ + EGQTPLM AVA STTVLR+ ++ GS +E DN +VL Y +KSR A+ KFI +NA ++ ++ +T + L EAI+ QDE + +++W Sbjct: 547 SNIPNEEGQTPLMFAVAADASTTVLRELLKTGSSFKEKDNGGNSVLHYALKSRQASAIKFITSNATTREREMMGKTIQTLWEAIDAKQDEAAANLMKW 644 HSP 6 Score: 66.6254 bits (161), Expect = 2.863e-10 Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNKTF-----KSDQRNPCYI-------QPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKI 4896 + +F ++ +GD+DELL WP K + D RNP +PTT+ N A G P F+ Q LR ++++DN+YIK+ Sbjct: 1731 ISVFIRVGRGDYDELLTWPFKQNMILTMKGQEDYRNPIRTGNEPQMGRPTTDWNTAIGTPRFYPQQRLRGEGFLREDNLYIKL 1813 HSP 7 Score: 54.6842 bits (130), Expect = 1.267e-6 Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 2 Query: 1274 LRELMRTGSVLKEKHTGGKTVLAYAMKSKEASAIEFIKPN 1393 LREL++TGS KEK GG +VL YA+KS++ASAI+FI N Sbjct: 571 LRELLKTGSSFKEKDNGGNSVLHYALKSRQASAIKFITSN 610
BLAST of TNF receptor-associated factor 3 vs. Planmine SMEST
Match: SMESG000016682.1 (SMESG000016682.1) HSP 1 Score: 73.1738 bits (178), Expect = 9.004e-28 Identity = 38/78 (48.72%), Postives = 47/78 (60.26%), Query Frame = 1 Query: 4072 HPKICEMNEDKCELCGEIDIWKELETTL*NLIERQICDEYKNKCPN*FNMKESVTLTEHWETCSRKAIMCPLKLLNCK 4305 H KIC E+KCE CG ID W ++E N E QICD Y+ C N + K+ V L EHW CS K + CPL+L NC+ Sbjct: 1493 HHKICIKREEKCEFCGVIDEWIKIEMQHRNPKEEQICDRYEGVCANNCDKKDKVKLKEHWNECSGKPVKCPLELFNCQ 1570 HSP 2 Score: 46.2098 bits (108), Expect = 9.004e-28 Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 2 Query: 3740 HEFEERFMCCECKKLLIEASQTE**C*ICR*WAIKVIRKE-LKLPRLGKTTIKTLENTRPDHAANH*ISNLLVKC 3961 ++ +ER CC+CK+LLI A QT+ C IC I+VI + +K P +T + + T D A N I+NLLV+C Sbjct: 1376 NDIKERLKCCKCKELLIGARQTKCGCRICTDCTIEVIETQTIKCPGCDETIERDEDPTTMDKATNKEINNLLVQC 1450 HSP 3 Score: 42.743 bits (99), Expect = 9.004e-28 Identity = 22/93 (23.66%), Postives = 53/93 (56.99%), Query Frame = 3 Query: 4332 KHLKENNVEHLTTMIEAIEITAMSINDSKDNLKSHIVLIKEMLNAREYFKKLEEQMIQKTILIDRKLKEITIQQKKCEANMPTSEELTITPYV 4610 KH+ EN++EH M++ I + A + + + +I+E+L +R+ F+K + ++K + +++K++++T K+ E N + + P++ Sbjct: 1580 KHMMENSIEHTEIMMKTIGMLAWEVKSLRTENDAQKAIIREILESRKNFEKSQGDTLKKMVEMEKKMQQMTNNIKELETNNSIARKYLTAPFI 1672 HSP 4 Score: 23.0978 bits (48), Expect = 9.004e-28 Identity = 14/30 (46.67%), Postives = 16/30 (53.33%), Query Frame = 3 Query: 3972 GF*KETTNHQEVYELIEVKCKKCNDTITPK 4061 G KE NH E E+ C+KC TIT K Sbjct: 1459 GLMKEAENHANECEYNEILCEKCQ-TITTK 1487 HSP 5 Score: 75.0998 bits (183), Expect = 7.018e-13 Identity = 43/98 (43.88%), Postives = 65/98 (66.33%), Query Frame = 2 Query: 2180 TNVKSNEGQTPLMIAVAGYVSTTVLRK*IENGSLLRE-DNRSRNVLIYDMKSRFAT--KFIINNAAKKDTYVLCRTSRPLKEAIEKGQDETSKAIIEW 2464 +N+ + EGQTPLM AVA STTVLR+ ++ GS +E DN +VL Y +KSR A+ KFI +NA ++ ++ +T + L EAI+ QDE + +++W Sbjct: 547 SNIPNEEGQTPLMFAVAADASTTVLRELLKTGSSFKEKDNGGNSVLHYALKSRQASAIKFITSNATTREREMMGKTIQTLWEAIDAKQDEAAANLMKW 644 HSP 6 Score: 66.6254 bits (161), Expect = 2.814e-10 Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNKTF-----KSDQRNPCYI-------QPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKI 4896 + +F ++ +GD+DELL WP K + D RNP +PTT+ N A G P F+ Q LR ++++DN+YIK+ Sbjct: 1724 ISVFIRVGRGDYDELLTWPFKQNMILTMKGQEDYRNPIRTGNEPQMGRPTTDWNTAIGTPRFYPQQRLRGEGFLREDNLYIKL 1806 HSP 7 Score: 54.6842 bits (130), Expect = 1.299e-6 Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 2 Query: 1274 LRELMRTGSVLKEKHTGGKTVLAYAMKSKEASAIEFIKPN 1393 LREL++TGS KEK GG +VL YA+KS++ASAI+FI N Sbjct: 571 LRELLKTGSSFKEKDNGGNSVLHYALKSRQASAIKFITSN 610
BLAST of TNF receptor-associated factor 3 vs. Planmine SMEST
Match: SMESG000022654.1 (SMESG000022654.1) HSP 1 Score: 70.4774 bits (171), Expect = 1.161e-27 Identity = 37/78 (47.44%), Postives = 45/78 (57.69%), Query Frame = 1 Query: 4072 HPKICEMNEDKCELCGEIDIWKELETTL*NLIERQICDEYKNKCPN*FNMKESVTLTEHWETCSRKAIMCPLKLLNCK 4305 H K+C E+KCE CG ID W +E N E QICD Y+ C N N K+ V L EHW C K + CPL+L NC+ Sbjct: 2077 HHKVCISREEKCEFCGAIDEWINIEKEHRNPKEEQICDLYEGICANHCNQKDKVKLKEHWNECIGKPVKCPLELFNCQ 2154 HSP 2 Score: 50.0618 bits (118), Expect = 1.161e-27 Identity = 32/72 (44.44%), Postives = 40/72 (55.56%), Query Frame = 2 Query: 3749 EERFMCCECKKLLIEASQTE**C*ICR*WAIKVIR-KELKLPRLGKTTIKTLENTRPDHAANH*ISNLLVKC 3961 EER CC+CK LLI A QT+ C IC I++I K LK P + + T D A N I+NLLV+C Sbjct: 1963 EERLKCCKCKGLLIGAIQTKCGCRICTDCTIEMIETKILKCPGCDEAIKGDEDPTTIDKATNKEINNLLVQC 2034 HSP 3 Score: 41.2022 bits (95), Expect = 1.161e-27 Identity = 24/93 (25.81%), Postives = 50/93 (53.76%), Query Frame = 3 Query: 4332 KHLKENNVEHLTTMIEAIEITAMSINDSKDNLKSHIVLIKEMLNAREYFKKLEEQMIQKTILIDRKLKEITIQQKKCEANMPTSEELTITPYV 4610 KH+ EN+++H M++ I + A + + + L++E+L +R+ F+K + +K ++ K+++I K E P S +L TP++ Sbjct: 2164 KHMIENSIKHTEIMMKTIGMIAWEMKSLRTETDAQKALMREILESRKNFEKSQAITPKKIAEMEEKIQQIISSIKDLETTSPISRKLPTTPFI 2256 HSP 4 Score: 23.0978 bits (48), Expect = 1.161e-27 Identity = 10/22 (45.45%), Postives = 12/22 (54.55%), Query Frame = 3 Query: 3975 F*KETTNHQEVYELIEVKCKKC 4040 F KE +H E E+ CKKC Sbjct: 2044 FVKEAESHANECEYNEIPCKKC 2065 HSP 5 Score: 87.4261 bits (215), Expect = 1.428e-16 Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 2 Query: 2093 NTLLHRVLKGNYRERII*TLKAMEDYKQHTNVKSNEGQTPLMIAVAGYVSTTVLRK*IENGSLLRE-DNRSRNVLIYDMKSRFAT--KFIINNAAKKDTYVLCRTSRPLKEAIEKGQDETSKAIIEW 2464 N LH ++ +RII ++ M+ +N+ + EGQTPLM AVA STTVLRK + GS +E DN NVL Y +KSR A+ KFI +NA ++ ++ +T + L EAIE QDE + +++W Sbjct: 912 NVPLHFAVQHRNIQRIIDIIQFMQKCGHTSNIPNKEGQTPLMFAVAADASTTVLRKLLRTGSSFKEKDNGENNVLHYALKSRQASAMKFITSNATIREREMMGKTIQTLWEAIEAKQDEAAANLMKW 1038 HSP 6 Score: 48.9062 bits (115), Expect = 1.389e-13 Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 3 Query: 1458 DTTTASIVKWAGGPDKIKILEVNKFE*NENIFLKKTIKAKRNFPKTIKALLKRSRI*FT 1634 D A+++KW +K+ ++N N N+ LK+TI A FPKTIK +LK R+ FT Sbjct: 1029 DEAAANLMKWTYEGSSLKVFDLNYIVRNRNVLLKETIYAYYPFPKTIKTILKWERLKFT 1087 HSP 7 Score: 48.521 bits (114), Expect = 1.389e-13 Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 2 Query: 1274 LRELMRTGSVLKEKHTGGKTVLAYAMKSKEASAIEFIKPN 1393 LR+L+RTGS KEK G VL YA+KS++ASA++FI N Sbjct: 965 LRKLLRTGSSFKEKDNGENNVLHYALKSRQASAMKFITSN 1004 HSP 8 Score: 61.6178 bits (148), Expect = 8.698e-9 Identity = 31/91 (34.07%), Postives = 48/91 (52.75%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNKTF-----KSDQRN-------PCYIQPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKINVIKDYKS 4920 + +F + KG++DELL WP K + + RN P +PTT+ N A G P F+ Q LR ++++DN+YI + V K K+ Sbjct: 2308 ISVFVSVGKGEYDELLTWPFKQNMILTMKGREEYRNTIRTGNEPQMGRPTTDWNTAIGTPFFYSQQRLRGEGFLREDNLYITLEVEKPDKT 2398 HSP 9 Score: 40.0466 bits (92), Expect = 2.044e-6 Identity = 20/68 (29.41%), Postives = 39/68 (57.35%), Query Frame = 3 Query: 765 WVKDKNFFDILGGITLMMKDYSRGKSKPTKITTIIERIPVLFTITDL--NKKINHVLITKNEMRILEI 962 WV+ K + I+ + DY++G P ++ I E+IP++FT+ D+ N ++ + +N RI++I Sbjct: 863 WVEGKGWMRIVNKAGKIAMDYAKGARSPPEMDLIKEKIPMIFTMADVEGNVPLHFAVQHRNIQRIIDI 930 HSP 10 Score: 33.113 bits (74), Expect = 2.044e-6 Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 2 Query: 962 MNIMEVCGQNTNISNSKGQIRLMIAIGID 1048 + M+ CG +NI N +GQ LM A+ D Sbjct: 931 IQFMQKCGHTSNIPNKEGQTPLMFAVAAD 959
BLAST of TNF receptor-associated factor 3 vs. Planmine SMEST
Match: SMESG000066529.1 (SMESG000066529.1) HSP 1 Score: 69.3218 bits (168), Expect = 2.631e-26 Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = 1 Query: 4072 HPKICEMNEDKCELCGEIDIWKELETTL*NLIERQICDEYKNKCPN*FNMKESVTLTEHWETCSRKAIMCPLKLLNCK 4305 H K+C E+KCE CG ID W ++E N E QICD Y+ C N + ++ V L EHW CS K + CPL+L NC+ Sbjct: 3512 HHKVCIKREEKCEFCGVIDEWIKIEMEHRNPKEEQICDLYEGICTNNCDKRDKVKLKEHWNECSGKPVKCPLELFNCQ 3589 HSP 2 Score: 46.2098 bits (108), Expect = 2.631e-26 Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 2 Query: 3740 HEFEERFMCCECKKLLIEASQTE**C*ICR*WAIKVIRKE-LKLPRLGKTTIKTLENTRPDHAANH*ISNLLVKC 3961 ++ +ER CC+CK+LLI A QT+ C IC I+VI E +K P +T + + T D A N I+NLLV+C Sbjct: 3395 NDIKERLKCCKCKELLIGARQTKCGCRICTDCTIEVIETETIKCPGCDETFERDEDPTTMDKATNKEINNLLVQC 3469 HSP 3 Score: 42.3578 bits (98), Expect = 2.631e-26 Identity = 23/93 (24.73%), Postives = 51/93 (54.84%), Query Frame = 3 Query: 4332 KHLKENNVEHLTTMIEAIEITAMSINDSKDNLKSHIVLIKEMLNAREYFKKLEEQMIQKTILIDRKLKEITIQQKKCEANMPTSEELTITPYV 4610 KH+ EN++EH M++ I + A + + + LI+E+L +R+ F++ + ++K +++K+++IT K+ E N + P++ Sbjct: 3599 KHMIENSIEHTEIMMKTIGMLAWEVKSLRTENDTQKALIREILESRKNFERSQGNTLKKMAEMEKKMQQITNSLKELETNSSVVRKYLTAPFI 3691 HSP 4 Score: 22.3274 bits (46), Expect = 2.631e-26 Identity = 13/30 (43.33%), Postives = 15/30 (50.00%), Query Frame = 3 Query: 3972 GF*KETTNHQEVYELIEVKCKKCNDTITPK 4061 G KE +H E E+ C KC TIT K Sbjct: 3478 GLMKEAESHTNECEYNEISCGKCQ-TITTK 3506 HSP 5 Score: 84.7297 bits (208), Expect = 9.726e-16 Identity = 50/127 (39.37%), Postives = 78/127 (61.42%), Query Frame = 2 Query: 2093 NTLLHRVLKGNYRERII*TLKAMEDYKQHTNVKSNEGQTPLMIAVAGYVSTTVLRK*IENGSLLRE-DNRSRNVLIYDMKSRFAT--KFIINNAAKKDTYVLCRTSRPLKEAIEKGQDETSKAIIEW 2464 N LH ++ +RI+ ++ M+ +N+ + EGQTPLM AVA STTVLR+ ++ GS +E DN NVL Y +KSR A+ KFI +NA ++ ++ +T + L EAI+ QDE + +++W Sbjct: 2595 NVPLHIAVQHRNTQRIMDIIQFMQKCGHSSNIPNEEGQTPLMFAVAADASTTVLRELLKTGSSFKEKDNGENNVLHYALKSRQASAIKFITSNATVREREMMGKTIQTLWEAIDAKQDEATANLMKW 2721 HSP 6 Score: 20.4014 bits (41), Expect = 9.726e-16 Identity = 12/43 (27.91%), Postives = 24/43 (55.81%), Query Frame = 3 Query: 1962 KGYVRNVNRISAMTENHAKEQTTVNEIEAI-ENLSTFLTTIDL 2087 KG++R VN+ + ++AK + E++ I E++ T D+ Sbjct: 2550 KGWMRIVNKAGKIAMDYAKGARSPPEMDRIKESIPMIFTMADV 2592 HSP 7 Score: 50.0618 bits (118), Expect = 3.228e-14 Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 2 Query: 1274 LRELMRTGSVLKEKHTGGKTVLAYAMKSKEASAIEFIKPN 1393 LREL++TGS KEK G VL YA+KS++ASAI+FI N Sbjct: 2648 LRELLKTGSSFKEKDNGENNVLHYALKSRQASAIKFITSN 2687 HSP 8 Score: 49.6766 bits (117), Expect = 3.228e-14 Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 3 Query: 1458 DTTTASIVKWAGGPDKIKILEVNKFE*NENIFLKKTIKAKRNFPKTIKALLKRSRI*FT 1634 D TA+++KW +K+ VN N N+ LK+TI A FPKT+KA+LK + FT Sbjct: 2712 DEATANLMKWTYEGSPLKVFNVNYMVRNRNVLLKETIYAHYPFPKTMKAMLKWEGLKFT 2770 HSP 9 Score: 66.2402 bits (160), Expect = 3.496e-10 Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 1 Query: 4684 VRIFFQICKGDFDELLEWPLKNKTF-----KSDQRNPCYI-------QPTTEENLAAGGPAFFQQDILRQAAYVKDDNIYIKI 4896 + +F ++ +GD+DELL WP K + D RNP +PTT+ N A G P F+ Q LR ++++DN+YIK+ Sbjct: 3743 ISVFVRVGRGDYDELLTWPFKQNMILTMKGQEDYRNPIRTGNEPQMGRPTTDWNTAIGTPRFYPQQRLRGEGFLREDNLYIKL 3825 The following BLAST results are available for this feature:
BLAST of TNF receptor-associated factor 3 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of TNF receptor-associated factor 3 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of TNF receptor-associated factor 3 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of TNF receptor-associated factor 3 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of TNF receptor-associated factor 3 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of TNF receptor-associated factor 3 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of TNF receptor-associated factor 3 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 3
BLAST of TNF receptor-associated factor 3 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of TNF receptor-associated factor 3 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of TNF receptor-associated factor 3 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of TNF receptor-associated factor 3 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of TNF receptor-associated factor 3 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 3
BLAST of TNF receptor-associated factor 3 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of TNF receptor-associated factor 3 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30034031 ID=SMED30034031|Name=TNF receptor-associated factor 3|organism=Schmidtea mediterranea sexual|type=transcript|length=6618bpback to top protein sequence of SMED30034031-orf-1 >SMED30034031-orf-1 ID=SMED30034031-orf-1|Name=SMED30034031-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=118bp MINALMDNYASNPISDVSETVIIDDSNSDSENKYAILKESKGSTKKAANKback to top Annotated Terms
The following terms have been associated with this transcript:
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