SMED30033879

Overview
NameSMED30033879
Smed IDSMED30033879
Length (bp)5121
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30033879 (SMED30033879) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30033879 (SMED30033879) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30033879 (SMED30033879) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30033879 (SMED30033879) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30033879

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30033879SMESG000023632.1 SmedASXL_017530SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30033879SMESG000023632.1 dd_Smed_v4_10785_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30033879SMESG000023632.1 dd_Smed_v4_10785_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30033879SMESG000023632.1 Contig41482newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30033879SMESG000023632.1 Contig41482uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30033879SMESG000023632.1 Contig50497newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30033879SMESG000023632.1 Contig50497uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30033879SMESG000023632.1 dd_Smed_v6_10785_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30033879 vs. TrEMBL
Match: A0A267DLR3 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig016775g1 PE=4 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 7.088e-105
Identity = 249/820 (30.37%), Postives = 404/820 (49.27%), Query Frame = 3 
Query: 2514 GPMGINGKNGAESESGFIGDEGSWGSPGCVRW-ILNISNSEMVPQPELGQVFLFKYNAEVISYEVFS-NNDDGIMEPNESITITNVRITNTGQMTLPQGSILTFPSTKTIRTYPNQDFILPEIDVGEIYLCQMAFKACIHDVTVPNAPGPFISHVEIESKISLLGRDFIDARNVQTFDVQYPVALSLLEAPKQMGRGEEAALLIEVTN---YSLIPYGNKFNTPINLQIAVEVKVKLDRRLMIMGLRESSVQLAAESQYTIPVTQLKFHPDQKDCVAMSVTEIPSRNGKIQICLNLVMENRSELFDNTLVQVELYLRGRLIEYGHCKIRVAPYYHALGEPGDALFITGPDTTRASFLRWEYLLNSLGMMTIDFWDIERYKGLSFLQNSGSRHEVTWIDRYKGKMIIFPHYEPQQISGWDISCHFGLKIDDIIEKSAFPIEESNNNDNEDGKFESFDDADDEYFNERDSSLVLLTDSADQEIDKAILLGCLGLLKVDDKASEYGGYHLFNPAGACYKLDVADKKLSKILSHFK------RRFPDQVYIAYDRT-IEYEMENGLYWKYGELILRRLGIDRDSLLTLFCAGEHRMLDITCHPSVFDWVPVIGQWAQVYLVILSLLGTSHRSHLMSMNPSKP-----------------VLMLPWGEQLSVQYVAALSMQPYLKNELSPLMKYCWRLQYLAKDVEIHVSYYKSQVPV---LLYNIYDYFQTS---SSINLSGKIRNKIKTLITSMEKRLLDYFGGRSMKLWTREARKMIRNGPPLRFCDLIDENLLFNPTRIDTKSELIDLSKYLSAPEYALIE 4868
            G  G+ G+ G    +G  G  G  G PG V W +++ S  E+  + +       +Y+  V  YEV S + D     P+  + +TNVR+ N G M LP G++L+F ST ++    ++ F LP+++  E Y     F   + DV  PN P  +    EI   +SL+GR F      +   +++PV LS +  P QMGRGE+  + IEVTN   ++ +   +           VE++++LDRR+++     +     +      P   LKFHPD KD V + +  +P+++  + +   +++E+++ELFD+ L QVELY+ G+L+EY    +RVAPY+     PGDALF+TG  TTR+SFL+W+ LL +L  + +DFWD ERY+G SF +++G RHEVTW+DRY  +++I P Y P+ + G D++ HF L    + + +A  I                         +R     L+   A +     +  GC G L            H  +  GA  +  V +K++ +IL                  + Y R  +E        W YGE   RRLG+ R + L      +   L+  C P+    VP+   WAQ+YL+ LSLL +  R  L ++ P +P                 +  LPWG+ L +  +AA+S+Q YL +E+S  M+ C +L+ L+ DV  + + Y    PV   +++ + DY + +   +   L   I+  +   + +M+K L    G R  +  +R +R+ + +   L F DL+D + +  P R    S+L  LS  L  P+Y L++
Sbjct:   30 GSAGVRGQQGKAGVAGLAGPGGQPGKPGYVIWSVIDPSTGEVTCRTQR------RYDVVVEQYEVASLSQDPEFFFPSAQVVVTNVRLRNRGGMALPCGAVLSFASTDSLAMRKSETFTLPKLEPNEQYTVTALFHGRLSDVPTPNEPVRYEGEAEIRPTVSLVGRQFTGVGCTRKVRIRHPVVLSAVNLPPQMGRGEQYCVNIEVTNQSAFNFVAPEDAAAATTTCSCEVELRIRLDRRMLVAAAEPT----GSGGDLGDPGYVLKFHPDLKDTVYVGIRNLPAKSSLV-VRFPMLLEDKAELFDHVLCQVELYMHGKLVEYCSNTVRVAPYFVVRDPPGDALFVTGRGTTRSSFLQWQCLLETL-HLDVDFWDTERYEGFSFFRDTGLRHEVTWVDRYGDRLLIVPDYRPELVCGLDLARHFTLAA-RLGDSAALLIA-----------------------GDRAPLARLVASLAAEPAKPRLAYGCSGRL-----------LHPLSCVGADREEAVREKRIRRILRDLNADSAASAAATSAAAVLYRRQDVEIRRVGCCRWSYGEAEFRRLGLPRTARLAFLELPDGEPLE--CCPAAAS-VPIASPWAQLYLICLSLLPSCSRRKLYNLKPLRPPSTVSAAADNEDDDGGVLFALPWGDTLELPLLAAMSVQAYLSDEISDSMRDCPKLKSLSSDVAANAASYSRSQPVSQRVIFYLRDYRRQAMRFAPKPLRPAIQQAVAEALLAMKKEL----GSREFRRRSRRSRQELVSPAALHFADLLDSSGVARPARPQPDSDLAKLSDLLDEPDYQLLD 795
[Close]
BLAST of SMED30033879 vs. TrEMBL
Match: A0A267FD70 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig001232g1 PE=4 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.536e-103
Identity = 251/823 (30.50%), Postives = 405/823 (49.21%), Query Frame = 3 
Query: 2505 GRDGPMGINGKNGAESESGFIGDEGSWGSPGCVRW-ILNISNSEMVPQPELGQVFLFKYNAEVISYEVFS-NNDDGIMEPNESITITNVRITNTGQMTLPQGSILTFPSTKTIRTYPNQDFILPEIDVGEIYLCQMAFKACIHDVTVPNAPGPFISHVEIESKISLLGRDFIDARNVQTFDVQYPVALSLLEAPKQMGRGEEAALLIEVTN---YSLIPYGNKFNTPINLQIAVEVKVKLDRRLMIMGLRESSVQLAAESQYTIPVTQLKFHPDQKDCVAMSVTEIPSRNGKIQICLNLVMENRSELFDNTLVQVELYLRGRLIEYGHCKIRVAPYYHALGEPGDALFITGPDTTRASFLRWEYLLNSLGMMTIDFWDIERYKGLSFLQNSGSRHEVTWIDRYKGKMIIFPHYEPQQISGWDISCHFGLKIDDIIEKSAFPIEESNNNDNEDGKFESFDDADDEYFNERDSSLVLLTDSADQEIDKAILLGCLGLLKVDDKASEYGGYHLFNPAGACYKLDVADKKLSKILSHFK------RRFPDQVYIAYDRT-IEYEMENGLYWKYGELILRRLGIDRDSLLTLFCAGEHRMLDITCHPSVFDWVPVIGQWAQVYLVILSLLGTSHRSHLMSMNPSKP-----------------VLMLPWGEQLSVQYVAALSMQPYLKNELSPLMKYCWRLQYLAKDVEIHVSYYKSQVPV---LLYNIYDYFQTSSSIN---LSGKIRNKIKTLITSMEKRLLDYFGGRSMKLWTREARKMIRNGPPLRFCDLIDENLLFNPTRIDTKSELIDLSKYLSAPEYALIE 4868
            G  G  G+ G+ G    +G  G  G  G PG V W +++ S  E+  + +       +Y+  V  YEV S + D     P+  + +TNVR+ N G M LP G++L+F ST ++    ++ F LP+++  E Y     F   + DV  PN P  +    EI   +SL+GR F      +   +++PV LS +  P QMGRGE+  + IEVTN   ++ +  G+           VE++++LDRR+++     +     +      P   LKFHPD KD V + +  +P+++  + +   +++E+++ELFD+ L QVELY+ G+L+EY    +RVAPY+     PGDALF+TG  TTR+SFL+W+ LL +L  + +DFWD ERY+G SF +++G RHEVTW+DRY  +++I P Y P+ + G D++ HF L    + + +A  I                         +R     L+   A +     +  GC G L            H  +  GA  +  V +K++ +IL                  + Y R  +E        W YGE   RRLG+ R + L      +   L+  C P+    VP+   WAQ+YL+ LSLL +  R  L ++ P +P                 +  LPWG+ L +  +AA+S+Q YL +E+S  M+ C +L+ L+ DV  + + Y    PV   +++ + DY + +       L   I+  +   + +M+K L    G R  +  +R +R+ + +   L F DL+D + +  P R    S+L  LS  L  P+Y L++
Sbjct:  449 GCPGSAGVRGQQGKAGVTGLAGPGGQPGKPGYVIWSVIDPSTGEVTCRTQR------RYDVVVEQYEVASLSQDPEFFFPSAQVVVTNVRLRNRGGMALPCGAVLSFASTDSLAMRKSETFTLPKLEPNEQYTVTALFHGRLSDVPTPNEPVRYEGEAEIRPTVSLVGRQFTGVGCTRKVRIRHPVVLSAVNLPPQMGRGEQYCVNIEVTNQSAFNFVAPGDAVAATTTCSCEVELRIRLDRRMLVAAAEPT----GSGGDLGDPGYVLKFHPDLKDTVYVGIRNLPAKSSLV-VRFPMLLEDKAELFDHVLCQVELYMHGKLVEYCSNTVRVAPYFVVRDPPGDALFVTGRGTTRSSFLQWQCLLETL-HLDVDFWDTERYEGFSFFRDTGLRHEVTWVDRYGDRLLIVPDYRPELVCGLDLARHFTLAA-RLGDSAALLIA-----------------------GDRAPLARLVASLAAEPAKPRLAYGCSGRL-----------LHPLSCVGADREEAVREKRIRRILRDLNADSAASAAATSAAAVLYRRQDVEIRRVGCCRWSYGEAEFRRLGLPRTARLAFLELPDGEPLE--CCPAAAS-VPIASPWAQLYLICLSLLPSCSRRKLYNLKPLRPPSTVSAAADNEDDDGGVLFALPWGDTLELPLLAAMSVQAYLSDEISDSMRDCPKLKSLSSDVAANAASYSRSQPVSQRVIFYLRDYRRQAMRFAPKPLRPAIQQAVAEALLAMKKEL----GSREFRRRSRRSRQELVSPAALHFADLLDSSGVARPARPQPDSDLAKLSDLLDEPDYQLLD 1217
[Close]
BLAST of SMED30033879 vs. TrEMBL
Match: A0A1X7U501 (Uncharacterized protein OS=Amphimedon queenslandica OX=400682 GN=109584647 PE=4 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.446e-71
Identity = 202/671 (30.10%), Postives = 322/671 (47.99%), Query Frame = 3 
Query: 2529 NGKNGAESESGFIGDEGSWGSPGCVRWILNISNSEMVPQPELGQVFLFKYNAEVISYEVFSNNDDGIMEPNESITITNVRITNTGQMTLPQGSILTFPSTKTIRTYPNQDFILPEIDVGEIYLCQMAFKACIHDVTVPNAPGPFISHVEIESKISLLGRDFIDARNVQTFDVQYPVALSLLEAPKQMGRGEEAALLIEVTNYSLIPYGNKFNTPINLQIAVEVKVKLDRRLMIMGLRESSVQLAAESQYTIPVTQLKFHPDQKDCVAMSVTEIPSRNGKIQICLNLVMENRSELFDNTLVQVELYLRGRLIEYGHCKIRVAPYYHALGEPGDALFITGPDTTRASFLRWEYLLNSLGMMTIDFWDIERYKGLSFLQNSGSRHEVTWIDRYKGKMIIFPHYEPQQISGWDISCHF-GLKIDDI----IEKSAFPIEESNNNDNEDGKFESFDDADDEYFNERDSSLVLLTDSADQEIDKAILLGCLGLLKVDDKASEYGGYHLFNPAGACYKLDVADKKLSKILSHFKRRFPDQVYIAYDRTIEYEMENGLYWKYGELILRRLGIDRD-SLLT--------LFCAGEHRMLDITCHPSVFDWVPVIGQWAQVYLVILSLLGTSHRSHLMSMNPSKPVLM--------LPWGEQLSVQYVAALSMQPYLKNEL 4475
            +G+ GA  + G  G     G    + W+++  +  ++ +         +Y+  V  +   S  DDGI EPNE I IT++ +TN   M LP G+I   PST+TI+  P +   LPEI  G  Y   +++   I D   PN PGPF+S  E   ++ LLGR F  +   +T  VQYP+ L+ +  P+ +GRGE A L I + N S +PYG+   +       V ++V  D+RL+ +      + L       +P T + + P+ +D + + + EIP + G + + L + ME+R+ELFD  L Q ++YLR +LIEY H  IRV+P+Y     P D L ITG   +R  F+ W+ +L SL  +T+DFWD +RY G+S    + +RH VTW  RY GKMI++PH +  ++ G DI+ HF G +  D     ++ S      S+N      K    DD  D        +LV      D  I+          L+ DD    Y G H   P               K++   ++  P + Y    R ++ +    + +KYG + +RR  + R    LT        +F + +++ LD    P+  ++ P+   + QVYL  L  L  + +  L+   P +   +        LP G  L+   +  +SM   + +E+
Sbjct:  596 DGRQGASGQDGINGQPAPTGG---ILWVISSPDGGILYESST------RYDCHVTGFHTASAVDDGIFEPNERIIITDLTMTNDAFMDLPSGAIALIPSTQTIKFEPIK-HTLPEIPRGATYTVPVSYYGRIFDQPPPNKPGPFVSKAEFIPRVELLGRPFERSFLKKTLIVQYPIKLAFMNCPENLGRGEFANLEIGIENISQMPYGSVPGS----GGKVILQVHFDQRLLPVAAANVGLSL-------VPYT-VTYDPNMRDSLYVQLHEIPPK-GTVVVQLTVQMESRAELFDRCLWQADVYLRDKLIEYNHQMIRVSPFYTPTATPSDILMITGSGISRREFVFWQKILESL-YVTVDFWDTDRYNGVSVDATTNTRHAVTWEGRYGGKMILYPHADLNKLYGIDIARHFHGSEFRDASSTDLDSSMLLFLPSSNPKGP--KNSPHDDPGDR-------NLVRHLSIVDAPIE----------LREDD----YTGRHWATPGTLFVPEKPYHSHEKKLIKRMEKDDPKRSYAVISRRVDIQSIGFMKYKYGSVDIRRFPLHRSCKFLTVDGSGGSKVFMSQDNKFLD----PNQAEF-PLASHFGQVYLSTLYCLPLTRKLVLLQPLPEEAGQLASLNLSFNLPNGGSLTKIELIVISMSHEIADEV 1214
[Close]
BLAST of SMED30033879 vs. TrEMBL
Match: A0A1X7U6B1 (Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 1.311e-70
Identity = 157/430 (36.51%), Postives = 237/430 (55.12%), Query Frame = 3 
Query: 2469 NKSGVTMAVTHIGRDGPMGINGKNGAESESGFIGDEGSWGSPGCVRWILNISNSEMVPQPELGQVFLFKYNAEVISYEVFSNNDDGIMEPNESITITNVRITNTGQMTLPQGSILTFPSTKTIRTYPNQDFILPEIDVGEIYLCQMAFKACIHDVTVPNAPGPFISHVEIESKISLLGRDFIDARNVQTFDVQYPVALSLLEAPKQMGRGEEAALLIEVTNYSLIPYGNKFNTPINLQIAVEVKVKLDRRLMIMGLRESSVQLAAESQYTIPVTQLKFHPDQKDCVAMSVTEIPSRNGKIQICLNLVMENRSELFDNTLVQVELYLRGRLIEYGHCKIRVAPYYHALGEPGDALFITGPDTTRASFLRWEYLLNSLGMMTIDFWDIERYKGLSFLQNSGSRHEVTWIDRYKGKMIIFPHYEPQQISGWDI 3758
            N  GVT      G  GP G +G  G +   G  G +G  G    +  IL +++S   P   +      +Y+  V  +   S  DDGI EPNE + IT++ +TN   M LP G+I   PST+TI+  P +   LPEI  G  Y   +++   I D   PN PGPF+S  E  S++ LLGR F  + + +T  VQYP+ L+ ++ P+ +GRGE A L I + N S +PYG+   +       V ++V  D+RL+ +      + L       +P T + + P+ +D + + + EIP + G + + L + ME+R+ELFD  L Q ++YLR +LIEY H  IRV+P+Y     P D L ITG   +R  F+ W+ +L SL  +T+DFWD +RY G+S    + +RH VTW  RY GKMI++PH +  ++ G ++
Sbjct:  570 NDDGVTFPYP-CGFPGPSGRSGSRGYDGRQGASGQDGINGKSAPIGGILWVTSS---PDGGILHESSTRYDCHVTGFHTASAVDDGIFEPNERVIITDLTMTNDASMDLPSGAIAFIPSTQTIKFEPIK-HELPEIPCGTTYTVPVSYYGRIFDQPPPNKPGPFVSKAEFVSRVELLGRPFERSFHKKTLVVQYPIKLAFMKCPENLGRGETANLEIGIKNISQMPYGSVPGS----GGKVILQVHFDQRLLPVAAANVGLSL-------VPYT-VTYDPNMRDSLYVQLHEIPPK-GTVVVQLTVQMESRAELFDRCLWQADVYLRDKLIEYNHQMIRVSPFYTPTASPSDILMITGSGISRREFVFWQKILESL-YVTVDFWDTDRYNGVSVDATTNTRHAVTWEGRYGGKMILYPHADLNKLHGMEL 980
[Close]
BLAST of SMED30033879 vs. TrEMBL
Match: A0A1I8ILA7 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.276e-49
Identity = 88/221 (39.82%), Postives = 140/221 (63.35%), Query Frame = 3 
Query: 3123 VTN---YSLIPYGNKFNTPINLQIAVEVKVKLDRRLMIMGLRESSVQLAAESQYTIPVTQLKFHPDQKDCVAMSVTEIPSRNGKIQICLNLVMENRSELFDNTLVQVELYLRGRLIEYGHCKIRVAPYYHALGEPGDALFITGPDTTRASFLRWEYLLNSLGMMTIDFWDIERYKGLSFLQNSGSRHEVTWIDRYKGKMIIFPHYEPQQISGWDISCHFGL 3776
            VTN   ++ +  G+           VE++++LDRR+++     +     +      P   LKFHPD KD V + +  +P+++  + +   +++E+++ELFD+ L QVELY+ G+L+EY    +RVAPY+     PGDALF+TG  TTR+SFL+W+ LL +L  + +DFWD ERY+G SF +++G RHEVTW+DRY  +++I P Y P+ + G D++ HF L
Sbjct:    1 VTNQSAFNFVAPGDAVAATTTCSCEVELRIRLDRRMLVAAAEPT----GSGGDLGDPGYVLKFHPDLKDTVYVGIRNLPAKSSLV-VRFPMLLEDKAELFDHVLCQVELYMHGKLVEYCSNTVRVAPYFVVRDPPGDALFVTGRGTTRSSFLQWQCLLETL-HLDVDFWDTERYEGFSFFRDTGLRHEVTWVDRYGDRLLIVPDYRPELVCGLDLARHFTL 215
[Close]
BLAST of SMED30033879 vs. Planmine SMEST
Match: SMESG000023632.1 (SMESG000023632.1)

HSP 1 Score: 3006.08 bits (7792), Expect = 0.000e+0
Identity = 1600/1606 (99.63%), Postives = 1603/1606 (99.81%), Query Frame = 3 
Query:   72 MSETLSDSHQLLCKDLNIVKSSSAINCNSSTNEDTIEEKIWRXXXXXXXXXXXXETMIFRRSLNGIEMFSQDDDSFTILAKSAVVEPKLYETGIDNKHKHLKIGFRVKFISVQNDDEIEGIYHDHDCHTNKKRQDKISKWYEFRAVSIFSMVRWVVMLDPTINNPGIREHPLGYECKEQCCDATGPETWICKWDEIHPSMLDVQFLYMXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVNETGSMYKXXXXXXXXXXXXDNTPTTPESPEIHPPCYADVVNNSLGYIKQPFQDENSERFQEHSQPILDADISFNKIKESWIRRDEDDTFLPPYGQAKMIPLNMGIGEEIGLPPDIQKMWDPESKKVIYLDHNARRISLNSPESTRNRKSVNRNSLAVDPSPLQSVYSEGRRNSSRHGTSLSTFGSGSIGNCLDLSPGDERWLPNFLETQLSAPAGIQTESSERRRNTNSFTQLPQIQEASDRPDHRIKILKPTKKMDTKRSQSWLNNADIMDVVTAEHMAQMAFNKPVSVLIDASGGNGCEGEDGINGHDGAHGMNGRSNMSDRNRGDPGHFGSDGVQGEDGDSGEDGLNAQDVEIYLSIFVSDEMDDEDEQKIYMKVTGSVEALIELKSDRILFISCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVTIHSSDPRLFNLVECDVRGGTSGTPXXXXXXXXXXXXXXXXXXXXXXYFTTYRSRVTGMDKISQRNALIYNGGIHAQTSGWFMGDNEYNDRRDVISDRNKSGVTMAVTHIGRDGPMGINGKNGAESESGFIGDEGSWGSPGCVRWILNISNSEMVPQPELGQVFLFKYNAEVISYEVFSNNDDGIMEPNESITITNVRITNTGQMTLPQGSILTFPSTKTIRTYPNQDFILPEIDVGEIYLCQMAFKACIHDVTVPNAPGPFISHVEIESKISLLGRDFIDARNVQTFDVQYPVALSLLEAPKQMGRGEEAALLIEVTNYSLIPYGNKFNTPINLQIAVEVKVKLDRRLMIMGLRESSVQLAAESQYTIPVTQLKFHPDQKDCVAMSVTEIPSRNGKIQICLNLVMENRSELFDNTLVQVELYLRGRLIEYGHCKIRVAPYYHALGEPGDALFITGPDTTRASFLRWEYLLNSLGMMTIDFWDIERYKGLSFLQNSGSRHEVTWIDRYKGKMIIFPHYEPQQISGWDISCHFGLKIDDIIEKSAFPIEESNNNDNEDGKFESFDDADDEYFNERDSSLVLLTDSADQEIDKAILLGCLGLLKVDDKASEYGGYHLFNPAGACYKLDVADKKLSKILSHFKRRFPDQVYIAYDRTIEYEMENGLYWKYGELILRRLGIDRDSLLTLFCAGEHRMLDITCHPSVFDWVPVIGQWAQVYLVILSLLGTSHRSHLMSMNPSKPVLMLPWGEQLSVQYVAALSMQPYLKNELSPLMKYCWRLQYLAKDVEIHVSYYKSQVPVLLYNIYDYFQTSSSINLSGKIRNKIKTLITSMEKRLLDYFGGRSMKLWTREARKMIRNGPPLRFCDLIDENLLFNPTRIDTKSELIDLSKYLSAPEYALIESVNCLSR 4889
            MSETLSDSHQLLCKDLNIVKSSSAINCNSSTNEDTIEEKIWRKNPKNFVKKWKKETMIFRRSLNGIEMFSQDDDSFTILAKSAVVEPKLYETGID+KHKHLKIGFRVKFISVQNDDEIEGIYHDHDCHTNKKRQDKISKWYEFRAVSIFSMVRWVVMLDPTINNPGIREHPLGYECKEQCCDATGPETWICKWDEIHPSMLDVQFLYMKKASIDKSAISKQKKRRSSRAYSRARALSVNETGSMYKISSNSHSNVSIHDNTPTTPESPEIHPPCYADVVNNSLGYIKQPFQDENSERFQEHS+PILDADISFNKIKESWIRRDEDDTFLPPYGQAKMIPLNMGIGEEIGLPPDIQKMWDPESKKVIYLDHNARRISLNSPESTRNRKSVNRNSLAVDPSPLQSVYSEGRRNSSRHGTSLSTFGSGSIGNCLDLSPGDERWLPNFLETQLSAPAGIQTESSERRR+TNSFTQLPQIQEASDRPDHRIKILKPTKKMDTKRSQSWLNNADIMDVVTAEHMAQMAFNKPVSVLIDASGGNGCEGEDGINGHDGAHGMNGRSNMSDRNRGDPGHFGSDGVQGEDGDSGEDGLNAQDVEIYLSIFVSDEMDDEDEQKIYMKVTGSVEALIELKSDRILFISCKGGQGGNGGKGGNGGNGGHGGDGGNGSQGLDGDGGAGGHGGDGGAAGGGGNGGRAGNGGNGGMVTIHSSDPRLFNLVECDVRGGTSGTPGIAGKPGIPGKGGKGGLGGKGAYFTTYRSRVTGMDKISQRNALIYNGGIHAQTSGWFMGDNEYNDRRDVISDRNKSGVTMAVTHIGRDGPMGINGKNGAESESGFIGDEGSWGSPGCVRWILNISNSEMVPQPELGQVFLFKYNAEVISYEVFSNNDDGIMEPNESITITNVRITNTGQMTLPQGSILTFPSTKTIRTYPNQDFILPEIDVGEIYLCQMAFKACIHDVTVPNAPGPFISHVEIESKISLLGRDFIDARNVQTFDVQYPVALSLLEAPKQMGRGEEAALLIEVTNYSLIPYGNKFNTPINLQIAVEVKVKLDRRLMIMGLRESS QLAAESQY IPVTQLKFHPDQKDCVAMSVTEIPSRNGKIQICLNLVMENRSELFDNTLVQVELYLRGRLIEYGHCKIRVAPYYHALGEPGDALFITGPDTTRASFLRWEYLLNSLGMMTIDFWDIERYKGLSFLQNSGSRHEVTWIDRYKGKMIIFPHYEPQQISGWDISCHFGLKIDDIIEKSAFPIEESNNNDNEDGKFESFDDADDEYFNERDSSLVLLTDSADQEIDKAILLGCLGLLKVDDKASEYGGYHLFNPAGACYKLDVADKKLSKILSHFKRRFPDQVYIAYDRTIEYEMENGLYWKYGELILRRLGIDRDSLLTLFCAGEHRMLDITCHPSVFDWVPVIGQWAQVYLVILSLLGTSHRSHLMSMNPSKPVLMLPWGEQLSVQYVAALSMQPYLKNELSPLMKYCWRLQYLAKDVEIHVSYYKSQVPVLLYNIYDYFQTSSSINLSGKIRNKIKTLITSMEKRLLDYFGGRSMKLWTREARKMIRNGPPLRFCDLIDE LLFNPTRIDTKSELIDLSKYLSAPEYALIESVNCLSR
Sbjct:    1 MSETLSDSHQLLCKDLNIVKSSSAINCNSSTNEDTIEEKIWRKNPKNFVKKWKKETMIFRRSLNGIEMFSQDDDSFTILAKSAVVEPKLYETGIDSKHKHLKIGFRVKFISVQNDDEIEGIYHDHDCHTNKKRQDKISKWYEFRAVSIFSMVRWVVMLDPTINNPGIREHPLGYECKEQCCDATGPETWICKWDEIHPSMLDVQFLYMKKASIDKSAISKQKKRRSSRAYSRARALSVNETGSMYKISSNSHSNVSIHDNTPTTPESPEIHPPCYADVVNNSLGYIKQPFQDENSERFQEHSKPILDADISFNKIKESWIRRDEDDTFLPPYGQAKMIPLNMGIGEEIGLPPDIQKMWDPESKKVIYLDHNARRISLNSPESTRNRKSVNRNSLAVDPSPLQSVYSEGRRNSSRHGTSLSTFGSGSIGNCLDLSPGDERWLPNFLETQLSAPAGIQTESSERRRHTNSFTQLPQIQEASDRPDHRIKILKPTKKMDTKRSQSWLNNADIMDVVTAEHMAQMAFNKPVSVLIDASGGNGCEGEDGINGHDGAHGMNGRSNMSDRNRGDPGHFGSDGVQGEDGDSGEDGLNAQDVEIYLSIFVSDEMDDEDEQKIYMKVTGSVEALIELKSDRILFISCKGGQGGNGGKGGNGGNGGHGGDGGNGSQGLDGDGGAGGHGGDGGAAGGGGNGGRAGNGGNGGMVTIHSSDPRLFNLVECDVRGGTSGTPGIAGKPGIPGKGGKGGLGGKGAYFTTYRSRVTGMDKISQRNALIYNGGIHAQTSGWFMGDNEYNDRRDVISDRNKSGVTMAVTHIGRDGPMGINGKNGAESESGFIGDEGSWGSPGCVRWILNISNSEMVPQPELGQVFLFKYNAEVISYEVFSNNDDGIMEPNESITITNVRITNTGQMTLPQGSILTFPSTKTIRTYPNQDFILPEIDVGEIYLCQMAFKACIHDVTVPNAPGPFISHVEIESKISLLGRDFIDARNVQTFDVQYPVALSLLEAPKQMGRGEEAALLIEVTNYSLIPYGNKFNTPINLQIAVEVKVKLDRRLMIMGLRESSGQLAAESQYAIPVTQLKFHPDQKDCVAMSVTEIPSRNGKIQICLNLVMENRSELFDNTLVQVELYLRGRLIEYGHCKIRVAPYYHALGEPGDALFITGPDTTRASFLRWEYLLNSLGMMTIDFWDIERYKGLSFLQNSGSRHEVTWIDRYKGKMIIFPHYEPQQISGWDISCHFGLKIDDIIEKSAFPIEESNNNDNEDGKFESFDDADDEYFNERDSSLVLLTDSADQEIDKAILLGCLGLLKVDDKASEYGGYHLFNPAGACYKLDVADKKLSKILSHFKRRFPDQVYIAYDRTIEYEMENGLYWKYGELILRRLGIDRDSLLTLFCAGEHRMLDITCHPSVFDWVPVIGQWAQVYLVILSLLGTSHRSHLMSMNPSKPVLMLPWGEQLSVQYVAALSMQPYLKNELSPLMKYCWRLQYLAKDVEIHVSYYKSQVPVLLYNIYDYFQTSSSINLSGKIRNKIKTLITSMEKRLLDYFGGRSMKLWTREARKMIRNGPPLRFCDLIDEKLLFNPTRIDTKSELIDLSKYLSAPEYALIESVNCLSR 1606
[Close]
BLAST of SMED30033879 vs. Planmine SMEST
Match: SMESG000023632.1 (SMESG000023632.1)

HSP 1 Score: 2958.7 bits (7669), Expect = 0.000e+0
Identity = 1583/1606 (98.57%), Postives = 1586/1606 (98.75%), Query Frame = 3 
Query:   72 MSETLSDSHQLLCKDLNIVKSSSAINCNSSTNEDTIEEKIWRXXXXXXXXXXXXETMIFRRSLNGIEMFSQDDDSFTILAKSAVVEPKLYETGIDNKHKHLKIGFRVKFISVQNDDEIEGIYHDHDCHTNKKRQDKISKWYEFRAVSIFSMVRWVVMLDPTINNPGIREHPLGYECKEQCCDATGPETWICKWDEIHPSMLDVQFLYMXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVNETGSMYKXXXXXXXXXXXXDNTPTTPESPEIHPPCYADVVNNSLGYIKQPFQDENSERFQEHSQPILDADISFNKIKESWIRRDEDDTFLPPYGQAKMIPLNMGIGEEIGLPPDIQKMWDPESKKVIYLDHNARRISLNSPESTRNRKSVNRNSLAVDPSPLQSVYSEGRRNSSRHGTSLSTFGSGSIGNCLDLSPGDERWLPNFLETQLSAPAGIQTESSERRRNTNSFTQLPQIQEASDRPDHRIKILKPTKKMDTKRSQSWLNNADIMDVVTAEHMAQMAFNKPVSVLIDASGGNGCEGEDGINGHDGAHGMNGRSNMSDRNRGDPGHFGSDGVQGEDGDSGEDGLNAQDVEIYLSIFVSDEMDDEDEQKIYMKVTGSVEALIELKSDRILFISCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVTIHSSDPRLFNLVECDVRGGTSGTPXXXXXXXXXXXXXXXXXXXXXXYFTTYRSRVTGMDKISQRNALIYNGGIHAQTSGWFMGDNEYNDRRDVISDRNKSGVTMAVTHIGRDGPMGINGKNGAESESGFIGDEGSWGSPGCVRWILNISNSEMVPQPELGQVFLFKYNAEVISYEVFSNNDDGIMEPNESITITNVRITNTGQMTLPQGSILTFPSTKTIRTYPNQDFILPEIDVGEIYLCQMAFKACIHDVTVPNAPGPFISHVEIESKISLLGRDFIDARNVQTFDVQYPVALSLLEAPKQMGRGEEAALLIEVTNYSLIPYGNKFNTPINLQIAVEVKVKLDRRLMIMGLRESSVQLAAESQYTIPVTQLKFHPDQKDCVAMSVTEIPSRNGKIQICLNLVMENRSELFDNTLVQVELYLRGRLIEYGHCKIRVAPYYHALGEPGDALFITGPDTTRASFLRWEYLLNSLGMMTIDFWDIERYKGLSFLQNSGSRHEVTWIDRYKGKMIIFPHYEPQQISGWDISCHFGLKIDDIIEKSAFPIEESNNNDNEDGKFESFDDADDEYFNERDSSLVLLTDSADQEIDKAILLGCLGLLKVDDKASEYGGYHLFNPAGACYKLDVADKKLSKILSHFKRRFPDQVYIAYDRTIEYEMENGLYWKYGELILRRLGIDRDSLLTLFCAGEHRMLDITCHPSVFDWVPVIGQWAQVYLVILSLLGTSHRSHLMSMNPSKPVLMLPWGEQLSVQYVAALSMQPYLKNELSPLMKYCWRLQYLAKDVEIHVSYYKSQVPVLLYNIYDYFQTSSSINLSGKIRNKIKTLITSMEKRLLDYFGGRSMKLWTREARKMIRNGPPLRFCDLIDENLLFNPTRIDTKSELIDLSKYLSAPEYALIESVNCLSR 4889
            MSETLSDSHQLLCKDLNIVKSSSAINCNSSTNEDTIEEKIWRKNPKNFVKKWKKETMIFRRSLNGIEMFSQDDDSFTILAKSAVVEPKLYETGID+KHKHLKIGFRVKFISVQNDDEIEGIYHDHDCHTNKK                 SMVRWVVMLDPTINNPGIREHPLGYECKEQCCDATGPETWICKWDEIHPSMLDVQFLYMKKASIDKSAISKQKKRRSSRAYSRARALSVNETGSMYKISSNSHSNVSIHDNTPTTPESPEIHPPCYADVVNNSLGYIKQPFQDENSERFQEHS+PILDADISFNKIKESWIRRDEDDTFLPPYGQAKMIPLNMGIGEEIGLPPDIQKMWDPESKKVIYLDHNARRISLNSPESTRNRKSVNRNSLAVDPSPLQSVYSEGRRNSSRHGTSLSTFGSGSIGNCLDLSPGDERWLPNFLETQLSAPAGIQTESSERRR+TNSFTQLPQIQEASDRPDHRIKILKPTKKMDTKRSQSWLNNADIMDVVTAEHMAQMAFNKPVSVLIDASGGNGCEGEDGINGHDGAHGMNGRSNMSDRNRGDPGHFGSDGVQGEDGDSGEDGLNAQDVEIYLSIFVSDEMDDEDEQKIYMKVTGSVEALIELKSDRILFISCKGGQGGNGGKGGNGGNGGHGGDGGNGSQGLDGDGGAGGHGGDGGAAGGGGNGGRAGNGGNGGMVTIHSSDPRLFNLVECDVRGGTSGTPGIAGKPGIPGKGGKGGLGGKGAYFTTYRSRVTGMDKISQRNALIYNGGIHAQTSGWFMGDNEYNDRRDVISDRNKSGVTMAVTHIGRDGPMGINGKNGAESESGFIGDEGSWGSPGCVRWILNISNSEMVPQPELGQVFLFKYNAEVISYEVFSNNDDGIMEPNESITITNVRITNTGQMTLPQGSILTFPSTKTIRTYPNQDFILPEIDVGEIYLCQMAFKACIHDVTVPNAPGPFISHVEIESKISLLGRDFIDARNVQTFDVQYPVALSLLEAPKQMGRGEEAALLIEVTNYSLIPYGNKFNTPINLQIAVEVKVKLDRRLMIMGLRESS QLAAESQY IPVTQLKFHPDQKDCVAMSVTEIPSRNGKIQICLNLVMENRSELFDNTLVQVELYLRGRLIEYGHCKIRVAPYYHALGEPGDALFITGPDTTRASFLRWEYLLNSLGMMTIDFWDIERYKGLSFLQNSGSRHEVTWIDRYKGKMIIFPHYEPQQISGWDISCHFGLKIDDIIEKSAFPIEESNNNDNEDGKFESFDDADDEYFNERDSSLVLLTDSADQEIDKAILLGCLGLLKVDDKASEYGGYHLFNPAGACYKLDVADKKLSKILSHFKRRFPDQVYIAYDRTIEYEMENGLYWKYGELILRRLGIDRDSLLTLFCAGEHRMLDITCHPSVFDWVPVIGQWAQVYLVILSLLGTSHRSHLMSMNPSKPVLMLPWGEQLSVQYVAALSMQPYLKNELSPLMKYCWRLQYLAKDVEIHVSYYKSQVPVLLYNIYDYFQTSSSINLSGKIRNKIKTLITSMEKRLLDYFGGRSMKLWTREARKMIRNGPPLRFCDLIDE LLFNPTRIDTKSELIDLSKYLSAPEYALIESVNCLSR
Sbjct:    1 MSETLSDSHQLLCKDLNIVKSSSAINCNSSTNEDTIEEKIWRKNPKNFVKKWKKETMIFRRSLNGIEMFSQDDDSFTILAKSAVVEPKLYETGIDSKHKHLKIGFRVKFISVQNDDEIEGIYHDHDCHTNKK-----------------SMVRWVVMLDPTINNPGIREHPLGYECKEQCCDATGPETWICKWDEIHPSMLDVQFLYMKKASIDKSAISKQKKRRSSRAYSRARALSVNETGSMYKISSNSHSNVSIHDNTPTTPESPEIHPPCYADVVNNSLGYIKQPFQDENSERFQEHSKPILDADISFNKIKESWIRRDEDDTFLPPYGQAKMIPLNMGIGEEIGLPPDIQKMWDPESKKVIYLDHNARRISLNSPESTRNRKSVNRNSLAVDPSPLQSVYSEGRRNSSRHGTSLSTFGSGSIGNCLDLSPGDERWLPNFLETQLSAPAGIQTESSERRRHTNSFTQLPQIQEASDRPDHRIKILKPTKKMDTKRSQSWLNNADIMDVVTAEHMAQMAFNKPVSVLIDASGGNGCEGEDGINGHDGAHGMNGRSNMSDRNRGDPGHFGSDGVQGEDGDSGEDGLNAQDVEIYLSIFVSDEMDDEDEQKIYMKVTGSVEALIELKSDRILFISCKGGQGGNGGKGGNGGNGGHGGDGGNGSQGLDGDGGAGGHGGDGGAAGGGGNGGRAGNGGNGGMVTIHSSDPRLFNLVECDVRGGTSGTPGIAGKPGIPGKGGKGGLGGKGAYFTTYRSRVTGMDKISQRNALIYNGGIHAQTSGWFMGDNEYNDRRDVISDRNKSGVTMAVTHIGRDGPMGINGKNGAESESGFIGDEGSWGSPGCVRWILNISNSEMVPQPELGQVFLFKYNAEVISYEVFSNNDDGIMEPNESITITNVRITNTGQMTLPQGSILTFPSTKTIRTYPNQDFILPEIDVGEIYLCQMAFKACIHDVTVPNAPGPFISHVEIESKISLLGRDFIDARNVQTFDVQYPVALSLLEAPKQMGRGEEAALLIEVTNYSLIPYGNKFNTPINLQIAVEVKVKLDRRLMIMGLRESSGQLAAESQYAIPVTQLKFHPDQKDCVAMSVTEIPSRNGKIQICLNLVMENRSELFDNTLVQVELYLRGRLIEYGHCKIRVAPYYHALGEPGDALFITGPDTTRASFLRWEYLLNSLGMMTIDFWDIERYKGLSFLQNSGSRHEVTWIDRYKGKMIIFPHYEPQQISGWDISCHFGLKIDDIIEKSAFPIEESNNNDNEDGKFESFDDADDEYFNERDSSLVLLTDSADQEIDKAILLGCLGLLKVDDKASEYGGYHLFNPAGACYKLDVADKKLSKILSHFKRRFPDQVYIAYDRTIEYEMENGLYWKYGELILRRLGIDRDSLLTLFCAGEHRMLDITCHPSVFDWVPVIGQWAQVYLVILSLLGTSHRSHLMSMNPSKPVLMLPWGEQLSVQYVAALSMQPYLKNELSPLMKYCWRLQYLAKDVEIHVSYYKSQVPVLLYNIYDYFQTSSSINLSGKIRNKIKTLITSMEKRLLDYFGGRSMKLWTREARKMIRNGPPLRFCDLIDEKLLFNPTRIDTKSELIDLSKYLSAPEYALIESVNCLSR 1589
The following BLAST results are available for this feature:
BLAST of SMED30033879 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033879 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033879 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033879 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033879 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033879 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033879 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033879 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A267DLR37.088e-10530.37Uncharacterized protein (Fragment) OS=Macrostomum ... [more]
A0A267FD701.536e-10330.50Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1X7U5012.446e-7130.10Uncharacterized protein OS=Amphimedon queenslandic... [more]
A0A1X7U6B11.311e-7036.51Uncharacterized protein OS=Amphimedon queenslandic... [more]
A0A1I8ILA72.276e-4939.82Uncharacterized protein OS=Macrostomum lignano OX=... [more]
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BLAST of SMED30033879 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033879 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033879 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033879 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033879 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033879 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000023632.10.000e+099.63SMESG000023632.1[more]
SMESG000023632.10.000e+098.57SMESG000023632.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30033879 ID=SMED30033879|Name=SMED30033879|organism=Schmidtea mediterranea sexual|type=transcript|length=5121bp
CAAATTTCAAGTTATTTTATTTGTTAAAGAAAACAGTTAACGACGATGAT
TTTCTGAAAAAATTCCTTTAAATGTCAGAGACTTTGTCAGATTCGCATCA
GTTATTATGCAAGGACTTGAACATTGTTAAAAGTTCATCAGCAATAAATT
GCAATTCTTCAACTAACGAAGACACGATTGAAGAAAAAATTTGGCGAAAA
AATCCGAAAAATTTTGTTAAAAAATGGAAAAAAGAAACAATGATTTTTAG
AAGGTCTCTCAATGGAATCGAAATGTTCAGTCAAGATGACGATTCTTTTA
CAATATTGGCCAAAAGCGCAGTTGTCGAACCAAAACTCTATGAAACTGGA
ATCGACAACAAACACAAGCATTTGAAAATCGGATTCCGAGTAAAATTTAT
TTCCGTACAAAACGATGACGAAATCGAAGGAATTTATCACGATCATGACT
GTCATACAAACAAGAAAAGGCAAGATAAAATATCGAAATGGTACGAATTT
AGAGCCGTCTCGATATTCAGCATGGTTCGATGGGTTGTAATGCTAGATCC
AACAATAAACAACCCTGGAATCAGGGAACATCCGTTGGGATATGAATGCA
AAGAGCAATGCTGCGATGCAACAGGTCCAGAAACTTGGATTTGCAAATGG
GATGAAATCCATCCTAGCATGCTCGATGTGCAATTCCTCTACATGAAGAA
GGCGTCAATAGATAAATCAGCGATTTCCAAACAGAAAAAGAGGAGATCGT
CAAGAGCGTATTCAAGAGCAAGAGCACTGAGTGTTAATGAAACTGGGAGC
ATGTACAAAATTTCCTCAAACAGCCATTCAAATGTCAGTATTCATGACAA
CACTCCGACAACTCCAGAGTCACCAGAAATTCACCCCCCTTGCTATGCTG
ACGTTGTCAATAATTCGCTTGGATACATCAAACAGCCATTTCAAGATGAA
AATTCAGAAAGATTTCAAGAGCATTCACAACCGATTCTGGATGCTGATAT
TAGCTTCAACAAAATTAAGGAATCATGGATTCGCAGAGACGAGGATGACA
CTTTTCTACCACCATATGGACAGGCAAAGATGATACCTCTGAATATGGGG
ATTGGTGAAGAAATCGGGTTACCTCCTGATATACAAAAAATGTGGGACCC
AGAAAGCAAAAAGGTCATTTACTTGGATCATAATGCAAGACGGATTTCAT
TAAATTCTCCCGAGTCTACTAGAAATAGAAAGTCCGTTAATAGAAATAGT
TTGGCTGTAGATCCATCTCCACTGCAATCGGTTTATTCAGAAGGTCGACG
AAATTCGTCGAGACATGGAACGAGTTTATCAACATTTGGTTCAGGCAGCA
TTGGAAATTGCTTGGATCTTTCTCCAGGCGACGAACGTTGGCTGCCAAAC
TTTTTAGAGACTCAATTATCAGCCCCAGCCGGTATTCAAACTGAATCCTC
AGAAAGAAGAAGAAATACAAACAGTTTTACTCAACTACCTCAAATTCAAG
AAGCATCTGATCGTCCTGATCATAGAATTAAAATATTGAAGCCAACCAAG
AAAATGGACACAAAACGTAGTCAATCCTGGCTGAATAATGCTGATATCAT
GGACGTTGTAACTGCTGAACATATGGCCCAAATGGCTTTCAATAAGCCAG
TTTCTGTTTTAATCGATGCGTCAGGAGGTAACGGATGTGAAGGAGAGGAC
GGTATTAATGGACACGATGGTGCTCATGGAATGAATGGTAGGTCCAACAT
GAGCGATAGAAACCGTGGGGATCCAGGACATTTTGGATCTGATGGAGTTC
AAGGTGAAGATGGTGACAGTGGCGAAGATGGATTGAATGCACAAGACGTT
GAGATATATTTGTCCATATTCGTTAGTGACGAGATGGACGACGAGGACGA
ACAGAAGATTTACATGAAAGTAACTGGATCCGTTGAAGCTTTGATTGAGT
TAAAAAGTGATCGAATTTTGTTCATTTCCTGTAAAGGTGGTCAAGGAGGA
AACGGAGGTAAAGGTGGTAATGGTGGAAATGGGGGTCATGGTGGAGACGG
CGGCAATGGAAGTCAAGGTTTAGATGGAGATGGTGGAGCTGGTGGTCATG
GTGGGGATGGTGGAGCTGCCGGAGGAGGTGGTAATGGTGGAAGAGCTGGT
AATGGCGGAAATGGAGGAATGGTTACTATACATTCATCTGATCCGAGACT
GTTTAATTTAGTAGAATGCGATGTTCGTGGCGGTACCTCTGGGACACCCG
GTATTGCAGGGAAACCCGGAATTCCTGGTAAAGGCGGTAAAGGAGGATTG
GGTGGCAAAGGAGCCTATTTTACTACTTATCGCAGCAGGGTTACTGGAAT
GGATAAAATCAGTCAACGGAATGCATTAATTTATAATGGTGGAATACACG
CTCAAACATCCGGTTGGTTTATGGGTGACAATGAATATAATGATAGAAGA
GATGTTATTTCTGACAGAAACAAATCAGGCGTAACAATGGCTGTGACACA
TATAGGAAGAGATGGTCCAATGGGAATAAATGGAAAAAATGGAGCTGAGA
GTGAATCAGGATTTATCGGAGATGAAGGATCTTGGGGATCCCCTGGATGT
GTTAGATGGATACTCAATATATCTAATTCAGAAATGGTACCACAACCAGA
ATTAGGACAGGTCTTTCTTTTTAAATACAATGCAGAGGTTATTAGTTATG
AAGTATTCTCCAATAACGATGATGGAATCATGGAGCCAAATGAATCTATC
ACAATCACAAATGTAAGAATAACAAATACTGGCCAAATGACCCTTCCTCA
AGGCTCAATTTTGACGTTTCCATCCACAAAAACAATTCGAACTTATCCAA
ATCAAGATTTCATTTTACCAGAAATTGATGTTGGTGAAATTTATCTTTGC
CAAATGGCATTCAAAGCTTGCATCCATGACGTTACTGTCCCTAATGCTCC
GGGTCCATTTATCAGTCATGTTGAAATAGAATCAAAAATCAGCTTACTTG
GCAGAGATTTTATTGACGCGAGAAATGTTCAAACTTTTGACGTTCAGTAT
CCTGTGGCACTGAGTTTATTAGAGGCTCCTAAGCAAATGGGAAGAGGAGA
AGAAGCTGCTCTGCTTATTGAGGTTACGAATTACTCTTTGATACCTTATG
GAAATAAGTTTAACACTCCAATAAATTTGCAAATCGCTGTCGAGGTGAAA
GTCAAACTTGACCGGAGACTTATGATTATGGGACTACGAGAAAGTTCTGT
TCAATTAGCGGCAGAGTCTCAGTATACAATTCCAGTCACTCAACTGAAAT
TTCATCCTGATCAAAAAGATTGTGTTGCAATGTCGGTTACAGAAATTCCT
TCGAGAAATGGGAAAATTCAAATTTGTTTGAACCTGGTAATGGAGAACCG
GTCTGAACTATTCGATAATACACTTGTTCAAGTTGAACTTTATTTAAGAG
GACGACTGATTGAATATGGACATTGTAAAATTAGAGTTGCTCCTTATTAT
CACGCTTTGGGTGAGCCAGGAGATGCTCTTTTCATAACTGGTCCAGATAC
AACTAGAGCAAGTTTTCTTAGATGGGAATATCTTCTCAATTCATTAGGAA
TGATGACTATAGACTTTTGGGATATTGAACGATACAAAGGTCTTTCATTT
TTGCAAAATAGTGGATCAAGGCACGAGGTAACATGGATTGATCGCTATAA
AGGTAAAATGATAATTTTCCCTCACTACGAACCTCAGCAAATATCTGGAT
GGGATATCAGTTGCCATTTTGGGTTGAAAATTGACGATATCATAGAAAAA
TCAGCTTTTCCAATTGAAGAGTCAAACAATAATGATAATGAGGATGGGAA
ATTCGAGTCATTTGACGATGCTGACGATGAATATTTTAATGAAAGGGATT
CTTCATTGGTTTTGTTGACCGATAGTGCTGATCAGGAAATCGACAAGGCA
ATTTTATTAGGATGTTTAGGTTTGCTGAAAGTGGATGATAAAGCCTCGGA
ATACGGCGGATATCATTTATTCAATCCCGCCGGAGCTTGTTACAAACTGG
ATGTTGCTGACAAGAAACTATCGAAGATTTTGTCGCATTTTAAAAGAAGA
TTTCCTGATCAAGTTTATATTGCATATGATCGGACGATTGAATATGAAAT
GGAAAATGGTCTTTATTGGAAATATGGGGAACTTATTTTAAGACGATTGG
GAATTGACCGAGATTCCTTGTTGACATTATTTTGTGCAGGGGAGCATAGG
ATGTTAGATATTACGTGTCATCCGTCAGTATTTGACTGGGTACCTGTTAT
TGGTCAGTGGGCCCAGGTTTATCTGGTTATTTTATCTTTACTGGGAACTT
CTCATCGGTCTCATTTGATGAGTATGAATCCTAGCAAACCAGTTCTTATG
CTTCCTTGGGGAGAACAGCTATCGGTTCAATATGTTGCAGCTTTGTCAAT
GCAACCTTATTTGAAGAATGAACTCAGTCCTCTCATGAAGTACTGTTGGA
GATTACAGTATTTAGCCAAAGATGTTGAGATCCATGTCAGTTATTATAAA
AGTCAAGTTCCAGTTTTACTATACAATATTTACGACTATTTCCAAACATC
TTCATCAATTAACCTCAGCGGGAAAATACGTAATAAAATTAAAACCCTTA
TTACATCTATGGAGAAGCGTTTACTTGATTATTTTGGAGGAAGAAGCATG
AAATTGTGGACAAGAGAAGCTAGAAAAATGATTAGAAATGGACCGCCGCT
GCGATTTTGTGATTTAATTGATGAAAACCTGCTGTTTAACCCAACAAGAA
TTGATACAAAGAGTGAACTGATTGATTTATCGAAATATTTAAGTGCTCCC
GAATACGCATTGATCGAATCGGTGAATTGTTTATCGAGATGAAGTTTAGA
ATTCAAAATGTTAATGAGAAAACAATGGCATATATTGTAAAATTAAAACA
AATAGTATTATTCAGAGATGTTCCAGTTTCGGTATCAGTGCAATATAGCA
TCATCTGATTATGATTGTATATTTTTTCATGCTGTGAGATCTATATTGTA
CTTTGAGATTATGATCACTTTGTTTTAATGAAATAAATGATATTTTCGGT
AGCTAAACTTTTCTAGGTCTC
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protein sequence of SMED30033879-orf-1

>SMED30033879-orf-1 ID=SMED30033879-orf-1|Name=SMED30033879-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1607bp
MSETLSDSHQLLCKDLNIVKSSSAINCNSSTNEDTIEEKIWRKNPKNFVK
KWKKETMIFRRSLNGIEMFSQDDDSFTILAKSAVVEPKLYETGIDNKHKH
LKIGFRVKFISVQNDDEIEGIYHDHDCHTNKKRQDKISKWYEFRAVSIFS
MVRWVVMLDPTINNPGIREHPLGYECKEQCCDATGPETWICKWDEIHPSM
LDVQFLYMKKASIDKSAISKQKKRRSSRAYSRARALSVNETGSMYKISSN
SHSNVSIHDNTPTTPESPEIHPPCYADVVNNSLGYIKQPFQDENSERFQE
HSQPILDADISFNKIKESWIRRDEDDTFLPPYGQAKMIPLNMGIGEEIGL
PPDIQKMWDPESKKVIYLDHNARRISLNSPESTRNRKSVNRNSLAVDPSP
LQSVYSEGRRNSSRHGTSLSTFGSGSIGNCLDLSPGDERWLPNFLETQLS
APAGIQTESSERRRNTNSFTQLPQIQEASDRPDHRIKILKPTKKMDTKRS
QSWLNNADIMDVVTAEHMAQMAFNKPVSVLIDASGGNGCEGEDGINGHDG
AHGMNGRSNMSDRNRGDPGHFGSDGVQGEDGDSGEDGLNAQDVEIYLSIF
VSDEMDDEDEQKIYMKVTGSVEALIELKSDRILFISCKGGQGGNGGKGGN
GGNGGHGGDGGNGSQGLDGDGGAGGHGGDGGAAGGGGNGGRAGNGGNGGM
VTIHSSDPRLFNLVECDVRGGTSGTPGIAGKPGIPGKGGKGGLGGKGAYF
TTYRSRVTGMDKISQRNALIYNGGIHAQTSGWFMGDNEYNDRRDVISDRN
KSGVTMAVTHIGRDGPMGINGKNGAESESGFIGDEGSWGSPGCVRWILNI
SNSEMVPQPELGQVFLFKYNAEVISYEVFSNNDDGIMEPNESITITNVRI
TNTGQMTLPQGSILTFPSTKTIRTYPNQDFILPEIDVGEIYLCQMAFKAC
IHDVTVPNAPGPFISHVEIESKISLLGRDFIDARNVQTFDVQYPVALSLL
EAPKQMGRGEEAALLIEVTNYSLIPYGNKFNTPINLQIAVEVKVKLDRRL
MIMGLRESSVQLAAESQYTIPVTQLKFHPDQKDCVAMSVTEIPSRNGKIQ
ICLNLVMENRSELFDNTLVQVELYLRGRLIEYGHCKIRVAPYYHALGEPG
DALFITGPDTTRASFLRWEYLLNSLGMMTIDFWDIERYKGLSFLQNSGSR
HEVTWIDRYKGKMIIFPHYEPQQISGWDISCHFGLKIDDIIEKSAFPIEE
SNNNDNEDGKFESFDDADDEYFNERDSSLVLLTDSADQEIDKAILLGCLG
LLKVDDKASEYGGYHLFNPAGACYKLDVADKKLSKILSHFKRRFPDQVYI
AYDRTIEYEMENGLYWKYGELILRRLGIDRDSLLTLFCAGEHRMLDITCH
PSVFDWVPVIGQWAQVYLVILSLLGTSHRSHLMSMNPSKPVLMLPWGEQL
SVQYVAALSMQPYLKNELSPLMKYCWRLQYLAKDVEIHVSYYKSQVPVLL
YNIYDYFQTSSSINLSGKIRNKIKTLITSMEKRLLDYFGGRSMKLWTREA
RKMIRNGPPLRFCDLIDENLLFNPTRIDTKSELIDLSKYLSAPEYALIES
VNCLSR*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0000418head
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 377..420
NoneNo IPR availablePANTHERPTHR24023:SF856coord: 535..864
NoneNo IPR availablePANTHERPTHR24023FAMILY NOT NAMEDcoord: 535..864