SMED30033819

Overview
NameSMED30033819
Smed IDSMED30033819
Length (bp)558
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30033819 (SMED30033819) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30033819 (SMED30033819) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30033819 (SMED30033819) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30033819 (SMED30033819) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30033819

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30033819SMESG000045681.1 SMESG000017524.1 SmedASXL_001657SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30033819 vs. Ensembl Human
Match: C7orf50 (chromosome 7 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:22421])

HSP 1 Score: 51.6026 bits (122), Expect = 5.686e-8
Identity = 26/88 (29.55%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:  184 DYLLSYEDKS-NWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSI---INDDCSGKTSKNRASKIASILN 435
            DYL  +  K  NW+F K  Q  LL +MY  DK     F  +  Y++ LQG ++   ++K  ++   ++++ S      RA +I  +L 
Sbjct:   72 DYLCRWAQKHKNWRFQKTRQTWLLLHMYDSDKVPDEHFSTLLAYLEGLQGRARELTVQKAEALMRELDEEGSDPPLPGRAQRIRQVLQ 159
[Close]
BLAST of SMED30033819 vs. Ensembl Human
Match: C7orf50 (chromosome 7 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:22421])

HSP 1 Score: 51.6026 bits (122), Expect = 7.329e-8
Identity = 26/88 (29.55%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:  184 DYLLSYEDKS-NWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSI---INDDCSGKTSKNRASKIASILN 435
            DYL  +  K  NW+F K  Q  LL +MY  DK     F  +  Y++ LQG ++   ++K  ++   ++++ S      RA +I  +L 
Sbjct:   89 DYLCRWAQKHKNWRFQKTRQTWLLLHMYDSDKVPDEHFSTLLAYLEGLQGRARELTVQKAEALMRELDEEGSDPPLPGRAQRIRQVLQ 176
[Close]
BLAST of SMED30033819 vs. Ensembl Human
Match: C7orf50 (chromosome 7 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:22421])

HSP 1 Score: 51.6026 bits (122), Expect = 8.391e-8
Identity = 26/88 (29.55%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:  184 DYLLSYEDKS-NWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSI---INDDCSGKTSKNRASKIASILN 435
            DYL  +  K  NW+F K  Q  LL +MY  DK     F  +  Y++ LQG ++   ++K  ++   ++++ S      RA +I  +L 
Sbjct:  104 DYLCRWAQKHKNWRFQKTRQTWLLLHMYDSDKVPDEHFSTLLAYLEGLQGRARELTVQKAEALMRELDEEGSDPPLPGRAQRIRQVLQ 191
[Close]
BLAST of SMED30033819 vs. Ensembl Human
Match: C7orf50 (chromosome 7 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:22421])

HSP 1 Score: 51.2174 bits (121), Expect = 9.665e-8
Identity = 26/88 (29.55%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:  184 DYLLSYEDKS-NWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSI---INDDCSGKTSKNRASKIASILN 435
            DYL  +  K  NW+F K  Q  LL +MY  DK     F  +  Y++ LQG ++   ++K  ++   ++++ S      RA +I  +L 
Sbjct:  104 DYLCRWAQKHKNWRFQKTRQTWLLLHMYDSDKVPDEHFSTLLAYLEGLQGRARELTVQKAEALMRELDEEGSDPPLPGRAQRIRQVLQ 191
[Close]
BLAST of SMED30033819 vs. Ensembl Human
Match: C7orf50 (chromosome 7 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:22421])

HSP 1 Score: 51.2174 bits (121), Expect = 9.665e-8
Identity = 26/88 (29.55%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:  184 DYLLSYEDKS-NWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSI---INDDCSGKTSKNRASKIASILN 435
            DYL  +  K  NW+F K  Q  LL +MY  DK     F  +  Y++ LQG ++   ++K  ++   ++++ S      RA +I  +L 
Sbjct:  104 DYLCRWAQKHKNWRFQKTRQTWLLLHMYDSDKVPDEHFSTLLAYLEGLQGRARELTVQKAEALMRELDEEGSDPPLPGRAQRIRQVLQ 191
[Close]
BLAST of SMED30033819 vs. Ensembl Zebrafish
Match: zmp:0000000624 (zmp:0000000624 [Source:ZFIN;Acc:ZDB-GENE-130530-627])

HSP 1 Score: 49.6766 bits (117), Expect = 3.544e-7
Identity = 29/92 (31.52%), Postives = 45/92 (48.91%), Query Frame = 1 
Query:  184 DYLLSY-EDKSNWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSIINDDCSGKTS--------KNRASKIASIL 432
            +YL  + E +  WKF K  Q  LLQNMY   K   S F ++  Y+  L+G+++   L+K   I+  D  G+          + RA +I  +L
Sbjct:  167 EYLTCWSERREEWKFQKTRQTWLLQNMYDSVKVPDSHFDVLLSYLDGLRGSARDTTLQKAEVILRWDGQGEKEETQDAEKKQQRAKQIVQLL 258
[Close]
BLAST of SMED30033819 vs. Ensembl Xenopus
Match: rap1gap (RAP1 GTPase activating protein [Source:Xenbase;Acc:XB-GENE-996878])

HSP 1 Score: 48.9062 bits (115), Expect = 6.556e-7
Identity = 29/83 (34.94%), Postives = 42/83 (50.60%), Query Frame = 1 
Query:  187 YLLSYEDK-SNWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSIIND-DCSGKTSKNRASKIASI 429
            YL S+  K   WKF K  Q  LL +MY  +K     FKI+  YI  LQG ++   +EK  +++   D S    ++   K+A I
Sbjct:  122 YLKSWSKKHEEWKFQKTRQTWLLLHMYDPEKVPDKYFKILLNYIAGLQGRARDTTVEKAEALMKQYDSSETQEEDHVPKLARI 204
[Close]
BLAST of SMED30033819 vs. Ensembl Xenopus
Match: rap1gap (RAP1 GTPase activating protein [Source:Xenbase;Acc:XB-GENE-996878])

HSP 1 Score: 48.9062 bits (115), Expect = 7.474e-7
Identity = 29/83 (34.94%), Postives = 42/83 (50.60%), Query Frame = 1 
Query:  187 YLLSYEDK-SNWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSIIND-DCSGKTSKNRASKIASI 429
            YL S+  K   WKF K  Q  LL +MY  +K     FKI+  YI  LQG ++   +EK  +++   D S    ++   K+A I
Sbjct:  133 YLKSWSKKHEEWKFQKTRQTWLLLHMYDPEKVPDKYFKILLNYIAGLQGRARDTTVEKAEALMKQYDSSETQEEDHVPKLARI 215
[Close]
BLAST of SMED30033819 vs. UniProt/SwissProt
Match: sp|Q9BRJ6|CG050_HUMAN (Uncharacterized protein C7orf50 OS=Homo sapiens OX=9606 GN=C7orf50 PE=1 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 4.641e-7
Identity = 26/88 (29.55%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:  184 DYLLSYEDKS-NWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSI---INDDCSGKTSKNRASKIASILN 435
            DYL  +  K  NW+F K  Q  LL +MY  DK     F  +  Y++ LQG ++   ++K  ++   ++++ S      RA +I  +L 
Sbjct:  104 DYLCRWAQKHKNWRFQKTRQTWLLLHMYDSDKVPDEHFSTLLAYLEGLQGRARELTVQKAEALMRELDEEGSDPPLPGRAQRIRQVLQ 191
[Close]
BLAST of SMED30033819 vs. TrEMBL
Match: G4YM97 (Uncharacterized protein OS=Phytophthora sojae (strain P6497) OX=1094619 GN=PHYSODRAFT_248463 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.083e-8
Identity = 33/123 (26.83%), Postives = 64/123 (52.03%), Query Frame = 1 
Query:  151 NESSDIIAKIRDYLLSYE--------DKSNWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSIINDDCSGKTSKNRAS-KIASILNSTLQNS*YNIVIEFYQIFA 492
            + S ++I + + YL  ++        D+  WKF K+ Q+ +LQ MY  D    ++F IV +Y+  +QGA++TRV+E    +I+     K  ++ A+ +   +L+  L    Y   ++  ++ A
Sbjct:   62 DRSPEMIQQAKYYLEQWQKRDETKADDELPWKFKKIKQQWILQWMYEADVVPKAMFAIVLEYLNGIQGAARTRVMESAQEVIDAGVPSKDEEDAAADEKEKMLSIKLARRRYKRALQVAELLA 184
[Close]
BLAST of SMED30033819 vs. TrEMBL
Match: A0A0C9XUB2 (Unplaced genomic scaffold K443scaffold_7, whole genome shotgun sequence OS=Laccaria amethystina LaAM-08-1 OX=1095629 GN=K443DRAFT_85301 PE=4 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 3.280e-7
Identity = 32/105 (30.48%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:  121 HKNKTSVSDINESSDIIAKIRDYL----LSYEDKSNWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSIINDDCSGKTSKNRASKIA 423
            HKN+T ++D  E + +  + R  L    L +   S WKFNK  Q  +++N++  +        +V KY+  +QG S+T+++E C SI+ D      ++N   K A
Sbjct:   78 HKNRTGLADPREDTVLSNQARKGLEYAFLQFHRPSKWKFNKARQNWIIRNVWSAENVPEMYLPLVIKYLTNVQGGSRTKLIETCQSIL-DKPHKPEAENPEEKPA 181
[Close]
BLAST of SMED30033819 vs. TrEMBL
Match: S4RKQ7 (Zmp:0000000624 OS=Petromyzon marinus OX=7757 PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 3.361e-7
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  184 DYLLSYE-DKSNWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSIIN 375
            +YL S+  DK  WKF K+ Q  LLQ+MY  +K   S F+I+ KY+  L+G +K   +EK  SI+ 
Sbjct:   54 EYLKSWATDKEQWKFQKLRQTWLLQHMYDAEKVPDSYFRILLKYLAGLKGQAKDTTIEKAESIMR 118
[Close]
BLAST of SMED30033819 vs. TrEMBL
Match: A0A2D4C909 (Uncharacterized protein OS=Pythium insidiosum OX=114742 GN=PINS_010900 PE=4 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 3.813e-7
Identity = 30/99 (30.30%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:  196 SYEDKSNWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSIINDDCSGKTSKNRASKIASILNSTLQNS*YNIVIEFYQIFA 492
            + + +  WKF KV Q  +L+ M+  D    S+F +V +Y++ +QGA++ RVL+  + II++    KT  + A  +AS L        Y   ++  Q+ A
Sbjct:  124 TPDGEEPWKFKKVKQLWILKWMFEADVIPKSMFALVLEYLEGMQGAARQRVLDDAHKIIDEGVPDKTDDDAAEDLASRLTRRR----YKRALQIAQVLA 218
[Close]
BLAST of SMED30033819 vs. TrEMBL
Match: A0A067TM27 (Uncharacterized protein OS=Galerina marginata (strain CBS 339.88) OX=685588 GN=GALMADRAFT_235499 PE=4 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.324e-7
Identity = 28/89 (31.46%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:  121 HKNKTSVSDINESSDIIAKIR---DYLLSYEDK-SNWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSIIN 375
            HKN+T  +D  E +++  + R   +Y  +  ++ S WKFNK  Q  L++N++  +      F +  KY+ A+QG S+ ++ + C S IN
Sbjct:   73 HKNRTGFADPREDTNLNNQSRKALEYAFTQMNRPSKWKFNKARQNWLIRNIWAPEALPEVYFPLAVKYLAAVQGGSREKLTQTCQSYIN 161
[Close]
BLAST of SMED30033819 vs. Ensembl Sea Lamprey
Match: zmp:0000000624 (zmp:0000000624 [Source:ZFIN;Acc:ZDB-GENE-130530-627])

HSP 1 Score: 57.3806 bits (137), Expect = 2.582e-11
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  184 DYLLSYE-DKSNWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSIIN 375
            +YL S+  DK  WKF K+ Q  LLQ+MY  +K   S F+I+ KY+  L+G +K   +EK  SI+ 
Sbjct:   54 EYLKSWATDKEQWKFQKLRQTWLLQHMYDAEKVPDSYFRILLKYLAGLKGQAKDTTIEKAESIMR 118
[Close]
BLAST of SMED30033819 vs. Ensembl Medaka
Match: zmp:0000000624 (chromosome 19 C7orf50 homolog [Source:NCBI gene;Acc:101164188])

HSP 1 Score: 47.3654 bits (111), Expect = 2.030e-6
Identity = 25/86 (29.07%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:  202 EDKSNWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSIINDDCSGKTSK--------NRASKIASILN 435
            E++S WKF K  Q  LLQ+M+  +K     F ++ +Y++ L+G ++   +EK  S++ +  SG+  +        +RA +I  +L+
Sbjct:  158 ENRSVWKFQKTRQTWLLQHMFDSEKIPDEKFSLLLQYLEGLRGMARDTTVEKAMSMVEE--SGRAPEDAVVQQRAHRAREIIQMLS 241
[Close]
BLAST of SMED30033819 vs. Planmine SMEST
Match: SMESG000045681.1 (SMESG000045681.1)

HSP 1 Score: 244.973 bits (624), Expect = 4.618e-84
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1 
Query:   28 MSIDENPIEQNLDXXXXXXXXXXXXXXXXLSHKNKTSVSDINESSDIIAKIRDYLLSYEDKSNWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSIINDDCSGKTSKNRASKIASILNSTLQNS 453
            MSIDENPIEQNLDTKKKRITNRRRKIVKRLSHKNKTSVSDINESSDIIAKIRDYLLSYE KSNWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSIINDDCSGKTSKNRASKIASILNSTLQNS
Sbjct:    1 MSIDENPIEQNLDTKKKRITNRRRKIVKRLSHKNKTSVSDINESSDIIAKIRDYLLSYEGKSNWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSIINDDCSGKTSKNRASKIASILNSTLQNS 142
[Close]
BLAST of SMED30033819 vs. Planmine SMEST
Match: SMESG000017524.1 (SMESG000017524.1)

HSP 1 Score: 242.662 bits (618), Expect = 3.075e-83
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1 
Query:   28 MSIDENPIEQNLDXXXXXXXXXXXXXXXXLSHKNKTSVSDINESSDIIAKIRDYLLSYEDKSNWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSIINDDCSGKTSKNRASKIASILNSTLQNS 453
            MSIDENPIEQNLDTKKKRITNRRRKIVKRLSHKNKTSVSDI ESSDIIAKIRDYLLSYEDKSNWKFNKVTQKA+LQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSIINDDCSGKTSKNRASKIASILNSTLQNS
Sbjct:    1 MSIDENPIEQNLDTKKKRITNRRRKIVKRLSHKNKTSVSDIIESSDIIAKIRDYLLSYEDKSNWKFNKVTQKAILQNMYFKDKCDSSLFKIVKKYIQALQGASKTRVLEKCNSIINDDCSGKTSKNRASKIASILNSTLQNS 142
The following BLAST results are available for this feature:
BLAST of SMED30033819 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
C7orf505.686e-829.55chromosome 7 open reading frame 50 [Source:HGNC Sy... [more]
C7orf507.329e-829.55chromosome 7 open reading frame 50 [Source:HGNC Sy... [more]
C7orf508.391e-829.55chromosome 7 open reading frame 50 [Source:HGNC Sy... [more]
C7orf509.665e-829.55chromosome 7 open reading frame 50 [Source:HGNC Sy... [more]
C7orf509.665e-829.55chromosome 7 open reading frame 50 [Source:HGNC Sy... [more]
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BLAST of SMED30033819 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033819 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033819 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
zmp:00000006243.544e-731.52zmp:0000000624 [Source:ZFIN;Acc:ZDB-GENE-130530-62... [more]
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BLAST of SMED30033819 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rap1gap6.556e-734.94RAP1 GTPase activating protein [Source:Xenbase;Acc... [more]
rap1gap7.474e-734.94RAP1 GTPase activating protein [Source:Xenbase;Acc... [more]
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BLAST of SMED30033819 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033819 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q9BRJ6|CG050_HUMAN4.641e-729.55Uncharacterized protein C7orf50 OS=Homo sapiens OX... [more]
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BLAST of SMED30033819 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
G4YM974.083e-826.83Uncharacterized protein OS=Phytophthora sojae (str... [more]
A0A0C9XUB23.280e-730.48Unplaced genomic scaffold K443scaffold_7, whole ge... [more]
S4RKQ73.361e-743.08Zmp:0000000624 OS=Petromyzon marinus OX=7757 PE=4 ... [more]
A0A2D4C9093.813e-730.30Uncharacterized protein OS=Pythium insidiosum OX=1... [more]
A0A067TM278.324e-731.46Uncharacterized protein OS=Galerina marginata (str... [more]
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BLAST of SMED30033819 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033819 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
zmp:00000006242.582e-1143.08zmp:0000000624 [Source:ZFIN;Acc:ZDB-GENE-130530-62... [more]
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BLAST of SMED30033819 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033819 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033819 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
zmp:00000006242.030e-629.07chromosome 19 C7orf50 homolog [Source:NCBI gene;Ac... [more]
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BLAST of SMED30033819 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000045681.14.618e-8499.30SMESG000045681.1[more]
SMESG000017524.13.075e-8398.59SMESG000017524.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30033819 ID=SMED30033819|Name=SMED30033819|organism=Schmidtea mediterranea sexual|type=transcript|length=558bp
TTTGTTTAAATATTGTAAATTTTTCAAATGTCGATTGATGAAAACCCTAT
CGAACAAAATCTTGATACAAAGAAAAAAAGGATTACTAACAGAAGACGAA
AAATTGTTAAAAGGTTATCTCATAAAAACAAGACCAGTGTCAGTGATATA
AATGAGTCTTCAGATATAATTGCAAAAATTCGTGATTATTTATTATCTTA
TGAAGATAAATCCAATTGGAAGTTTAATAAAGTGACGCAAAAAGCACTTC
TTCAAAATATGTATTTTAAAGATAAATGTGATTCTTCTCTTTTTAAAATT
GTGAAAAAATATATTCAGGCTTTACAAGGAGCATCAAAAACAAGAGTTCT
GGAAAAATGCAATTCTATTATTAATGATGATTGTTCAGGGAAAACCTCCA
AAAATCGTGCCAGTAAGATCGCTTCTATTTTGAATAGTACTTTGCAGAAT
AGCTAATATAATATTGTAATTGAATTTTATCAAATATTTGCTTTTTTTTA
TAAATTGTTATTGTATATTTTTTCTTATAGTTTCTAGATTTTTATGTTGA
GACGGGAC
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protein sequence of SMED30033819-orf-1

>SMED30033819-orf-1 ID=SMED30033819-orf-1|Name=SMED30033819-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=143bp
MSIDENPIEQNLDTKKKRITNRRRKIVKRLSHKNKTSVSDINESSDIIAK
IRDYLLSYEDKSNWKFNKVTQKALLQNMYFKDKCDSSLFKIVKKYIQALQ
GASKTRVLEKCNSIINDDCSGKTSKNRASKIASILNSTLQNS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR019327DUF2373
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019327Protein of unknown function DUF2373PFAMPF10180DUF2373coord: 58..113
e-value: 5.6E-16
score: 58.1
NoneNo IPR availablePANTHERPTHR22306UNCHARACTERIZEDcoord: 4..138