SMED30033802
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30033802 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of SMED30033802 vs. Ensembl Celegans
Match: ZC53.4 (pep chromosome:WBcel235:X:1925750:1937689:1 gene:WBGene00022511.1 transcript:ZC53.4.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZC53.4) HSP 1 Score: 94.3597 bits (233), Expect = 4.476e-32 Identity = 61/185 (32.97%), Postives = 94/185 (50.81%), Query Frame = -2 Query: 308 LADYFEQFRNKSIAHNELESLNFFGIPGVSWSSVLMTLEWLI*LLQDMEMYCFYERGIRGGLIFVNKHYVKSDENTE-----------LLYIDINNLYGWALSQPLPCGEFEWIHQDLENIL-----------EQCKLMGLENLGYTVEVDIDIPDEIHDFLDDLPDAAEKMCLKDTKVRKLLLT 796 +AD FE FR S+ +L+ +F PG++W ++L + + L D+EMY E+GIRGG++ K Y K + LLY+D NNLYGWA+ Q LP G+F++ Q L +IL + + + G EVD++ P EIH +D P E + + + ++KL T Sbjct: 1117 IADVFENFRALSLRVYQLDPCWYFTSPGLAWDAMLKKTKVELDKLHDVEMYLMIEKGIRGGIVNAVKRYSKVNNKYTKNFNEKQLTNFLLYLDANNLYGWAMCQMLPTGDFKFETQSLISILNGEAEVKSDLKDYINYLKKLDRGCIFEVDLEYPKEIHSRHNDSPLCPENVKIDNHVIKKLCNT 1301 HSP 2 Score: 62.7734 bits (151), Expect = 4.476e-32 Identity = 35/99 (35.35%), Postives = 65/99 (65.66%), Query Frame = -1 Query: 3 KRNYVVHWRLLKIFMMLGVQILKIHIAIKFNQAPIFKKYVDTNTKFRAESRSDLDKSYYKFLNNSLYGKTVEXXXXXXXXXLCNSKTKMMTYASKRSFR 299 + YV+H+ L + LG+++ KIH I F ++ Y++ NT R +++D +K +YK +NNS++GKT+EN+++R+++RL + K+ ASK +F+ Sbjct: 1305 REKYVIHYENLLQCLQLGLKLKKIHRIITFKESNWLASYIEMNTNPRKNAKNDFEKDFYKLMNNSVFGKTMENVRERVDVRLVTDEDKIKKLASKPNFK 1403
BLAST of SMED30033802 vs. Ensembl Celegans
Match: H12I13.3 (pep chromosome:WBcel235:II:6071386:6073251:-1 gene:WBGene00019192.1 transcript:H12I13.3.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H12I13.3) HSP 1 Score: 52.373 bits (124), Expect = 3.818e-7 Identity = 21/55 (38.18%), Postives = 39/55 (70.91%), Query Frame = -1 Query: 84 GVQILKIHIAIKFNQAPIFKKYVDTNTKFRAESRSDLDKSYYKFLNNSLYGKTVE 248 G+++ KIH + F ++ KKY+ NT R ++++D +K ++K +NNS++GKT+E Sbjct: 299 GLKLKKIHRILTFKESAWMKKYIMLNTNLRKQAKNDFEKDFFKLMNNSVFGKTME 353
BLAST of SMED30033802 vs. TrEMBL
Match: A0A4Y2ETR7 (Uncharacterized protein OS=Araneus ventricosus OX=182803 GN=AVEN_91292_1 PE=4 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 9.314e-55 Identity = 74/219 (33.79%), Postives = 124/219 (56.62%), Query Frame = -2 Query: 341 LEETYELPP--------IWNGVNKNEYEKAQNIWTETHCETLLDYMMIYLKLDVYLLADYFEQFRNKSIAHNELESLNFFGIPGVSWSSVLMTLEWLI*LLQDMEMYCFYERGIRGGLIFVNK-----------HYVKSDENTELLYIDINNLYGWALSQPLPCGEFEWIHQDLENILEQCKLMGLENLGYTVEVDIDIPDEIHDFLDDLPDAAEKMCL 940 EET +LPP + G+++ +YE AQN+W + L +Y +Y+K DV LL+D FE FR + +L++++ PG++W + L + + L D++M+ F E+ IRGG+ ++ +Y S+ N + Y+D NNLYGWA+SQPLP +FEW+ + ++ + C+ GY +EVD++ P E+HD ++ P A E+M + Sbjct: 882 FEET-QLPPRSAFHSSLVNEGISEADYEHAQNVWKCFEIKNLGEYHDLYVKTDVILLSDVFENFRKLTQNFYQLDAVHMLTSPGLAWQAALKMTDVKLDLFTDIDMHLFIEKMIRGGVSMISHRHSEANHPQCPNYDASEANKYITYLDANNLYGWAMSQPLPVSDFEWLSPEEISLQQICQTPDDATTGYILEVDMEYPPELHDLHNNYPLAPERMTI 1099 HSP 2 Score: 72.4034 bits (176), Expect = 9.314e-55 Identity = 35/82 (42.68%), Postives = 58/82 (70.73%), Query Frame = -1 Query: 84 SETFV-NT*KKRNYVVHWRLLKIFMMLGVQILKIHIAIKFNQAPIFKKYVDTNTKFRAESRSDLDKSYYKFLNNSLYGKTVE 326 SE V N K+NYV+H+R LK+++ LG++++KIH +KF Q K Y++ NT+ R +++ +K ++K LNN++YGKT+E Sbjct: 1123 SEKLVPNLCNKQNYVLHYRNLKLYLSLGLKLIKIHRVMKFTQRCWLKDYINFNTEQRKHAKTAFEKDFFKLLNNAVYGKTME 1204 HSP 3 Score: 51.2174 bits (121), Expect = 9.314e-55 Identity = 32/96 (33.33%), Postives = 50/96 (52.08%), Query Frame = -3 Query: 946 HILKYGINRFPQ*NISCIPTASEKVLTLIDHCKK---ITIKFIDSYQFINDSLVRAVKTLTNLPLTNSVFQGCIIN-------SKGIFPYDYAESL 1203 H++ G+ + IS IP EK ++ +K +T++FIDS+QF+N SL + V+ L S+ Q CI + KGI+PY+Y S Sbjct: 786 HLIMQGLGKLQDHEISVIPNNMEKYISFSIRRRKENPVTLQFIDSFQFLNTSLQKLVENLDRSKF--SIMQSCISSPHRDLLLKKGIYPYEYMSSF 879
BLAST of SMED30033802 vs. TrEMBL
Match: A0A4Y2FCD8 (Uncharacterized protein OS=Araneus ventricosus OX=182803 GN=AVEN_49753_1 PE=4 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.610e-54 Identity = 76/219 (34.70%), Postives = 124/219 (56.62%), Query Frame = -2 Query: 341 LEETYELPP--------IWNGVNKNEYEKAQNIWTETHCETLLDYMMIYLKLDVYLLADYFEQFRNKSIAHNELESLNFFGIPGVSWSSVLMTLEWLI*LLQDMEMYCFYERGIRGGL-IFVNKH----------YVKSDENTELLYIDINNLYGWALSQPLPCGEFEWIHQDLENILEQCKLMGLENLGYTVEVDIDIPDEIHDFLDDLPDAAEKMCL 940 EET +LPP + G+++ +YE AQN+W + L +Y +++K DV LL+D FE FR + +L++ + PG++W L + + L D++M+ F E+GIRGG+ I ++H Y S+ N + Y+D NNLYGWA+SQPLP +FEW+ + ++ + C+ GY +EVD++ P E+HD ++ P A E+M + Sbjct: 111 FEET-QLPPRSAFHSSLVNEGISEADYEHAQNVWKCFEIKNLGEYHYLHVKTDVILLSDVFENFRKLTQNFYQLDAAHMLTSPGLAWQEALKMTDVKLDLFTDIDMHLFIEKGIRGGVSIISHRHSEANHPQCPNYDASEANKYITYLDANNLYGWAMSQPLPVSDFEWLSPEEISLQQICQTPDDTTTGYILEVDMEYPPELHDLHNNYPLATERMTI 328 HSP 2 Score: 71.633 bits (174), Expect = 1.610e-54 Identity = 36/82 (43.90%), Postives = 57/82 (69.51%), Query Frame = -1 Query: 84 SETFV-NT*KKRNYVVHWRLLKIFMMLGVQILKIHIAIKFNQAPIFKKYVDTNTKFRAESRSDLDKSYYKFLNNSLYGKTVE 326 SE V N K+NYV+H+R LK+++ LG+++ KIH +KF Q K Y++ NT+ R ++S +K ++K LNN++YGKT+E Sbjct: 352 SEKLVPNLCNKQNYVLHYRNLKLYLSLGLKLTKIHRVMKFTQRCWLKDYINFNTEQRKHAKSAFEKDFFKLLNNAVYGKTME 433 HSP 3 Score: 53.5286 bits (127), Expect = 1.610e-54 Identity = 32/96 (33.33%), Postives = 52/96 (54.17%), Query Frame = -3 Query: 946 HILKYGINRFPQ*NISCIPTASEKVLTLIDHCKK---ITIKFIDSYQFINDSLVRAVKTLTNLPLTNSVFQGCIIN-------SKGIFPYDYAESL 1203 H++ +G+ + IS IP EK ++ +K +T++FIDS+QF+N SL + V+ L + S+ Q CI + KGI+PY+Y S Sbjct: 15 HLIMHGLGKLQDHEISVIPNNMEKYISFSIRRRKENPVTLQFIDSFQFLNTSLQKLVENLDHSKF--SIMQSCISSPHRDLLLKKGIYPYEYMSSF 108
BLAST of SMED30033802 vs. TrEMBL
Match: A0A4Y2VQ51 (Uncharacterized protein OS=Araneus ventricosus OX=182803 GN=AVEN_157213_1 PE=4 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.744e-54 Identity = 76/219 (34.70%), Postives = 125/219 (57.08%), Query Frame = -2 Query: 341 LEETYELPP--------IWNGVNKNEYEKAQNIWTETHCETLLDYMMIYLKLDVYLLADYFEQFRNKSIAHNELESLNFFGIPGVSWSSVLMTLEWLI*LLQDMEMYCFYERGIRGGLIFVN-KH----------YVKSDENTELLYIDINNLYGWALSQPLPCGEFEWIHQDLENILEQCKLMGLENLGYTVEVDIDIPDEIHDFLDDLPDAAEKMCL 940 EET +LPP + G+++ +YE AQN+W + L +Y +Y+K+DV LL+D FE FR + L++ + PG++W + L + + L D++M+ F E+GIRGG+ ++ +H Y S+ N + Y+D NNLYGWA+SQPLP +FEW+ + ++ + C+ GY +EVD++ P E+HD ++ P A E+M + Sbjct: 750 FEET-QLPPRSAFHSSLVNEGISEADYEHAQNVWKCFEIKNLGEYHDLYVKIDVILLSDVFENFRKLTQNFYRLDAAHMLTSPGLAWQAALKMTDVKLDLFTDIDMHLFIEKGIRGGVSMISHRHSEANHPQCPNYDASEANKYITYLDANNLYGWAMSQPLPVSDFEWLSPEEISLQQICQTPDDATTGYILEVDMEYPPELHDLHNNYPLAPERMTI 967 HSP 2 Score: 72.0182 bits (175), Expect = 1.744e-54 Identity = 35/82 (42.68%), Postives = 58/82 (70.73%), Query Frame = -1 Query: 84 SETFV-NT*KKRNYVVHWRLLKIFMMLGVQILKIHIAIKFNQAPIFKKYVDTNTKFRAESRSDLDKSYYKFLNNSLYGKTVE 326 SE V N K+NYV+H+R LK+++ LG++++KIH +KF Q K Y++ NT+ R +++ +K ++K LNN++YGKT+E Sbjct: 990 SEKLVPNLYNKQNYVLHYRNLKLYLSLGLKLIKIHRVMKFTQRCWLKDYINFNTEQRKHAKTAFEKDFFKLLNNAVYGKTME 1071 HSP 3 Score: 51.6026 bits (122), Expect = 1.744e-54 Identity = 32/96 (33.33%), Postives = 51/96 (53.12%), Query Frame = -3 Query: 946 HILKYGINRFPQ*NISCIPTASEKVLTLIDHCKK---ITIKFIDSYQFINDSLVRAVKTLTNLPLTNSVFQGCIIN-------SKGIFPYDYAESL 1203 H++ G+ + IS IP EK ++ +K +T++FIDS+QF+N SL + V+ L + S+ Q CI + KGI+PY+Y S Sbjct: 654 HLIMQGLGKLQDHEISVIPNNMEKYISFSIRRRKENPVTLQFIDSFQFLNTSLQKLVENLDHSKF--SIMQSCISSPHRDLLLKKGIYPYEYMSSF 747
BLAST of SMED30033802 vs. TrEMBL
Match: A0A4Y2LR15 (Uncharacterized protein OS=Araneus ventricosus OX=182803 GN=AVEN_266660_1 PE=4 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 2.214e-54 Identity = 76/219 (34.70%), Postives = 125/219 (57.08%), Query Frame = -2 Query: 341 LEETYELPP--------IWNGVNKNEYEKAQNIWTETHCETLLDYMMIYLKLDVYLLADYFEQFRNKSIAHNELESLNFFGIPGVSWSSVLMTLEWLI*LLQDMEMYCFYERGIRGGLIFVN-KH----------YVKSDENTELLYIDINNLYGWALSQPLPCGEFEWIHQDLENILEQCKLMGLENLGYTVEVDIDIPDEIHDFLDDLPDAAEKMCL 940 EET +LPP + G+++ +YE AQN+W + L +Y +Y+K DV LL+D FE FR + +L++ + PG++W + L + + L D++M+ F E+GIRGG+ ++ +H Y S+ N + Y+D NNLYGWA+SQPLP +FEW+ + ++ + C+ GY +EVD++ P E+HD ++ P A E+M + Sbjct: 774 FEET-QLPPRSAFHSSLVNEGISEADYEHAQNVWKCFEIKNLGEYHDLYVKTDVILLSDVFENFRKLTQNFYQLDAAHMLTSPGLAWQAALKMTDVKLDLFTDIDMHLFIEKGIRGGVSMISHRHSEANHPQCPNYDASEANKYITYLDANNLYGWAMSQPLPVSDFEWLSPEKISLQQICQTPDDATTGYILEVDMEYPPELHDLHNNYPLAPERMTI 991 HSP 2 Score: 72.0182 bits (175), Expect = 2.214e-54 Identity = 35/82 (42.68%), Postives = 58/82 (70.73%), Query Frame = -1 Query: 84 SETFV-NT*KKRNYVVHWRLLKIFMMLGVQILKIHIAIKFNQAPIFKKYVDTNTKFRAESRSDLDKSYYKFLNNSLYGKTVE 326 SE V N K+NYV+H+R LK+++ LG++++KIH +KF Q K Y++ NT+ R +++ +K ++K LNN++YGKT+E Sbjct: 1015 SEKLVPNLCNKQNYVLHYRNLKLYLSLGLKLIKIHRVMKFTQRCWLKDYINFNTEQRKHAKTAFEKDFFKLLNNAVYGKTME 1096 HSP 3 Score: 50.8322 bits (120), Expect = 2.214e-54 Identity = 31/96 (32.29%), Postives = 51/96 (53.12%), Query Frame = -3 Query: 946 HILKYGINRFPQ*NISCIPTASEKVLTLIDHCKK---ITIKFIDSYQFINDSLVRAVKTLTNLPLTNSVFQGCIIN-------SKGIFPYDYAESL 1203 H++ G+ + IS IP EK ++ +K +T++F+DS+QF+N SL + V+ L + S+ Q CI + KGI+PY+Y S Sbjct: 678 HLIMQGLGKLQDHEISVIPNNMEKYISFSIRRRKENPVTLQFVDSFQFLNTSLQKLVENLDHSKF--SIMQSCISSPHRDLLLKKGIYPYEYMSSF 771
BLAST of SMED30033802 vs. TrEMBL
Match: A0A4Y2T410 (DNA_pol_B_2 domain-containing protein OS=Araneus ventricosus OX=182803 GN=AVEN_169350_1 PE=4 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 3.747e-54 Identity = 76/219 (34.70%), Postives = 125/219 (57.08%), Query Frame = -2 Query: 341 LEETYELPP--------IWNGVNKNEYEKAQNIWTETHCETLLDYMMIYLKLDVYLLADYFEQFRNKSIAHNELESLNFFGIPGVSWSSVLMTLEWLI*LLQDMEMYCFYERGIRGGLIFVN-KH----------YVKSDENTELLYIDINNLYGWALSQPLPCGEFEWIHQDLENILEQCKLMGLENLGYTVEVDIDIPDEIHDFLDDLPDAAEKMCL 940 EET +LPP + G+++ +YE AQN+W + L +Y +Y+K DV LL+D FE FR + +L++ + PG++W + L + + L D++M+ F E+GIRGG+ ++ +H Y S+ N + Y+D NNLYGWA+SQPLP +FEW+ + ++ + C+ GY +EVD++ P E+HD ++ P A E+M + Sbjct: 264 FEET-QLPPRSAFHSSLVNEGISEADYEHAQNVWKCFEIKNLGEYHDLYVKTDVILLSDVFENFRKLTQNFYQLDAAHMLTSPGLAWQAALKMTDVKLDLFTDIDMHLFIEKGIRGGVSMISHRHSEANHPQCPNYDTSEANKYITYLDANNLYGWAMSQPLPVSDFEWLSPEEISLQQICQTPDDATTGYILEVDMEYPPELHDLHNNYPLAPERMTI 481 HSP 2 Score: 72.0182 bits (175), Expect = 3.747e-54 Identity = 35/82 (42.68%), Postives = 58/82 (70.73%), Query Frame = -1 Query: 84 SETFV-NT*KKRNYVVHWRLLKIFMMLGVQILKIHIAIKFNQAPIFKKYVDTNTKFRAESRSDLDKSYYKFLNNSLYGKTVE 326 SE V N K+NYV+H+R LK+++ LG++++KIH +KF Q K Y++ NT+ R +++ +K ++K LNN++YGKT+E Sbjct: 505 SEKLVPNLCNKQNYVLHYRNLKLYLSLGLKLIKIHRVMKFTQRCWLKDYINFNTEQRKHAKTAFEKDFFKLLNNAVYGKTME 586 HSP 3 Score: 50.8322 bits (120), Expect = 3.747e-54 Identity = 32/96 (33.33%), Postives = 49/96 (51.04%), Query Frame = -3 Query: 946 HILKYGINRFPQ*NISCIPTASEKVLTLIDHCKK---ITIKFIDSYQFINDSLVRAVKTLTNLPLTNSVFQGCIIN-------SKGIFPYDYAESL 1203 H + G+ + IS IP EK ++ +K +T++FIDS+QF+N SL + V+ L S+ Q CI + KGI+PY+Y S Sbjct: 168 HFIMQGLGKLQDHEISVIPNNMEKYISFSIRRRKENPVTLQFIDSFQFLNTSLQKLVENLDRSKF--SIMQSCISSPHRDLLLKKGIYPYEYMSSF 261
BLAST of SMED30033802 vs. Ensembl Nematostella
Match: EDO46109 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RR56]) HSP 1 Score: 113.62 bits (283), Expect = 1.576e-45 Identity = 71/207 (34.30%), Postives = 108/207 (52.17%), Query Frame = -2 Query: 314 VNKNEYEKAQNIWTETHCETLLDYMMIYLKLDVYLLADYFEQFRNKSIAHNELESLNFFGIPGVSWSSVLMTLEWLI*LLQDMEMYCFYERGIRGGLIFVNKHYVKS--------DENTE---LLYIDINNLYGWALSQPLPCGEFEWIHQDLENILEQCKLMGLENLGYTVEVDIDIPDEIHDFLDDLPDAAEKMCLKDTKVRKLL 901 +++ +Y+ AQ +W T+ DY +YL+ DV LLAD FE FR+ + + L+ ++ PG++W + L + LL D +M +E GIRGG+ ++ + K+ D N + Y+D NNLYGWA+S+PLP F W+ ++ K G VEVD+ P +HD DD P A E +K KV KL+ Sbjct: 1097 ISEEDYQHAQKVWETFKMSTMRDYHDLYLESDVLLLADVFENFRDVCLENYGLDPAWYYTAPGLAWDAALKITRVELELLTDCDMLLMFEEGIRGGVSMISTRHSKANNPYMREYDPNLPTKYITYLDANNLYGWAMSKPLPTHGFRWMTD------QELKEWGRHPC--VVEVDMAYPRHLHDSHDDYPLAPE--SIKINKVGKLI 1293 HSP 2 Score: 70.8626 bits (172), Expect = 1.576e-45 Identity = 30/72 (41.67%), Postives = 49/72 (68.06%), Query Frame = -1 Query: 84 KRNYVVHWRLLKIFMMLGVQILKIHIAIKFNQAPIFKKYVDTNTKFRAESRSDLDKSYYKFLNNSLYGKTVE 299 K YVVH LK++ LG+++ K+H I F ++ K Y+D NT RA++ +D +K ++K +NNS++GKT+E Sbjct: 1299 KTKYVVHHETLKLYESLGLKVTKVHRGITFEESGWLKTYIDLNTSLRAKATNDFEKDFFKLMNNSVFGKTME 1370 HSP 3 Score: 37.3502 bits (85), Expect = 1.576e-45 Identity = 27/87 (31.03%), Postives = 40/87 (45.98%), Query Frame = -3 Query: 958 ISCIPTASEKVLTLIDHCK--------------KITIKFIDSYQFINDSLVRAVKTL-----TNLPLTNSVFQGCIINSKGIFPYDY 1161 I+CIP EK ++ K I+FIDS++F++ SL VK L NL + Q ++ KG+FPYD+ Sbjct: 984 INCIPNNEEKYISFTKQVVVDRFTNKEGKQVDVKRDIRFIDSFKFMSASLDSLVKNLPRESFKNLTIHYKGEQLQLLLRKGVFPYDW 1070
BLAST of SMED30033802 vs. Planmine SMEST
Match: SMESG000062279.1 (SMESG000062279.1) HSP 1 Score: 249.21 bits (635), Expect = 4.747e-121 Identity = 129/231 (55.84%), Postives = 163/231 (70.56%), Query Frame = -2 Query: 281 LCRKLRILEETYELPPIWNGVNKNEYEKAQNIWTETHCETLLDYMMIYLKLDVYLLADYFEQFRNKSIAHNELESLNFFGIPGVSWSSVLMTLEWLI*LLQDMEMYCFYERGIRGGLIFVNKHYVKSDENTELLYIDINNLYGWALSQPLPCGEFEWIHQDLENILEQC-KLMGLENL--GYTVEVDIDIPDEIHDFLDDLPDAAEKMCLKDTKVRKLLLTH-EKKETMLY 961 + L +LE T ELPPIW V+ +EY AQ IWT+ +CET+LDYM+ YLKLDV+LLADYF+QFR K+IA+N LE LNF +E+L DMEM+ FYE GIRGGL FVNKHYV S E+TE LYIDINNLYGWALSQ LP +F W++ L+++L +C + +E L GYT+EVDIDIPD +H+FL+D P EKMC ++KV KL+LTH KK +L+ Sbjct: 1580 FAKSLEVLESTTELPPIWGSVSVDEYATAQQIWTQQNCETMLDYMLTYLKLDVFLLADYFQQFRAKAIAYNTLEPLNF--------------MEFL-----DMEMFNFYEGGIRGGLTFVNKHYVASFEDTEFLYIDINNLYGWALSQYLPYADFVWVYDGLDDVLNECMNVADIEILPYGYTMEVDIDIPDYLHNFLNDFPIGPEKMCPPNSKVEKLMLTHWPKKNHVLH 1791 HSP 2 Score: 115.546 bits (288), Expect = 4.747e-121 Identity = 61/100 (61.00%), Postives = 81/100 (81.00%), Query Frame = -1 Query: 3 KKRNYVVHWRLLKIFMMLGVQILKIHIAIKFNQAPIFKKYVDTNTKFRAESRSDLDKSYYKFLNNSLYGKTVEXXXXXXXXXLCNSKTKMMTYASKRSFR 302 K+N+V+HWRLL++++ LGV ++K+H AIKF QAPIF Y+D NTK RA+S S+L ++ +K NNSLYGK+VENLKK +NLRLCNS KM+ YASK +FR Sbjct: 1784 PKKNHVLHWRLLRLYLSLGVNVVKVHRAIKFKQAPIFHAYIDKNTKLRAQSTSELYRNLFKLYNNSLYGKSVENLKKWMNLRLCNSDEKMIVYASKPTFR 1883 HSP 3 Score: 112.079 bits (279), Expect = 4.747e-121 Identity = 52/90 (57.78%), Postives = 70/90 (77.78%), Query Frame = -3 Query: 934 HILKYGINRFPQ*NISCIPTASEKVLTLIDHCKKITIKFIDSYQFINDSLVRAVKTLTNLPLTNSVFQGCIINSKGIFPYDYAESLEFLK 1203 HILKYG+N F ++ IPT +EK ++LI + K+ ++FIDS QFIN SL +AVKTLT+LPLT+SVF G I+ +K IFPYD+A+SLE L+ Sbjct: 1499 HILKYGLNNFSSWELNIIPTTTEKFISLIAYINKLPVRFIDSMQFINSSLAKAVKTLTDLPLTDSVFDGAIVRAKAIFPYDFAKSLEVLE 1588
BLAST of SMED30033802 vs. Planmine SMEST
Match: SMESG000053372.1 (SMESG000053372.1) HSP 1 Score: 251.136 bits (640), Expect = 3.070e-119 Identity = 125/220 (56.82%), Postives = 158/220 (71.82%), Query Frame = -2 Query: 293 ILEETYELPPIWNGVNKNEYEKAQNIWTETHCETLLDYMMIYLKLDVYLLADYFEQFRNKSIAHNELESLNFFGIPGVSWSSVLMTLEWLI*LLQDMEMYCFYERGIRGGLIFVNKHYVKSDENTELLYIDINNLYGWALSQPLPCGEFEWIHQDLENILEQCK-LMGLENL--GYTVEVDIDIPDEIHDFLDDLPDAAEKMCLKDTKVRKLLLTHEKKE 943 +LE TYELPPIW GV+++EY+KAQ IWT+ +C TL DYM+IYLKLDV+LLADYF+QFR K+I +N LE LNF+GIPG FYE GIRGGL FVNKHY+ + E+TELLYIDINNLYGWALSQ LP +F W++ L+ +L +C ++ +E L GYT+EVDI+IPD +HDFL+D P EKMC ++KV KL+LTH K+ Sbjct: 1276 VLETTYELPPIWEGVSEDEYDKAQLIWTQQNCRTLRDYMLIYLKLDVFLLADYFQQFRAKAIVYNGLEPLNFYGIPGHGNVQ-------------------FYEGGIRGGLTFVNKHYIAASEDTELLYIDINNLYGWALSQSLPYADFTWVYDGLDEVLNECANVVDIEILPYGYTMEVDIEIPDNLHDFLNDFPIGPEKMCPPNSKVEKLMLTHYPKK 1476 HSP 2 Score: 111.694 bits (278), Expect = 3.070e-119 Identity = 53/90 (58.89%), Postives = 72/90 (80.00%), Query Frame = -3 Query: 934 HILKYGINRFPQ*NISCIPTASEKVLTLIDHCKKITIKFIDSYQFINDSLVRAVKTLTNLPLTNSVFQGCIINSKGIFPYDYAESLEFLK 1203 HILKYG++RF N+ IPT++EK ++LI H K+ ++FIDS QF+N SL +AVKTLT+LPLT+SVFQG I++ KGIFPY++A S E L+ Sbjct: 1189 HILKYGLDRFLSWNLDIIPTSTEKFISLIVHINKLAVRFIDSMQFVNCSLAKAVKTLTSLPLTSSVFQGSIVDCKGIFPYNFAVSEEVLE 1278 HSP 3 Score: 107.457 bits (267), Expect = 3.070e-119 Identity = 58/100 (58.00%), Postives = 78/100 (78.00%), Query Frame = -1 Query: 3 KKRNYVVHWRLLKIFMMLGVQILKIHIAIKFNQAPIFKKYVDTNTKFRAESRSDLDKSYYKFLNNSLYGKTVEXXXXXXXXXLCNSKTKMMTYASKRSFR 302 K+NYV+HWRLL++++ LG ++ IH AIK+ QAP FK Y+D NT RA + S+L + +K NNSLYGK+VENLKKR+NLRLCNS K++TY+SK +FR Sbjct: 1474 PKKNYVLHWRLLRLYLSLGAKVTHIHRAIKYKQAPTFKHYIDKNTNLRANAVSELYRDLFKLYNNSLYGKSVENLKKRMNLRLCNSAEKLITYSSKPAFR 1573
BLAST of SMED30033802 vs. Planmine SMEST
Match: SMESG000051837.1 (SMESG000051837.1) HSP 1 Score: 241.891 bits (616), Expect = 2.044e-118 Identity = 123/231 (53.25%), Postives = 158/231 (68.40%), Query Frame = -2 Query: 281 LCRKLRILEETYELPPIWNGVNKNEYEKAQNIWTETHCETLLDYMMIYLKLDVYLLADYFEQFRNKSIAHNELESLNFFGIPGVSWSSVLMTLEWLI*LLQDMEMYCFYERGIRGGLIFVNKHYVKSDENTELLYIDINNLYGWALSQPLPCGEFEWIHQDLENILEQCK-LMGLENL--GYTVEVDIDIPDEIHDFLDDLPDAAEKMCLKDTKVRKLLLTH-EKKETMLY 961 + L +LE T ELP IW V+ +EY AQ IWT+ +CET+LDYM+ YLKLDV+LL DYF+QFR K+IA+N LE LNF+GIPG+SW+S LMTL+ I LLQDMEM+ FYE GIRGGL FVNKHY AL+Q P +F W++ L+N+L +C ++ +E L GYT+EVDI+IPD +HDFL+D P EKMC +KV KL+LTH KK +L+ Sbjct: 446 FAKSLEVLESTTELPAIWGSVSADEYATAQQIWTQQNCETMLDYMLTYLKLDVFLLVDYFQQFRAKAIAYNTLEPLNFYGIPGMSWASALMTLQEPIELLQDMEMFNFYEGGIRGGLTFVNKHY--------------------ALNQYFPYADFVWVNDGLDNVLSECANVVDIEILPYGYTMEVDIEIPDNLHDFLNDFPIGPEKMCPPSSKVEKLMLTHWPKKNHVLH 656 HSP 2 Score: 117.087 bits (292), Expect = 2.044e-118 Identity = 63/99 (63.64%), Postives = 82/99 (82.83%), Query Frame = -1 Query: 3 KRNYVVHWRLLKIFMMLGVQILKIHIAIKFNQAPIFKKYVDTNTKFRAESRSDLDKSYYKFLNNSLYGKTVEXXXXXXXXXLCNSKTKMMTYASKRSFR 299 K+N+V+HWRLLK+++ LGV+++K+H AIKF QAPIF Y+D NTK RA+S S+L + +K NNSLYGK+VENLKKR+NLRLCNS KM+ YASK +FR Sbjct: 650 KKNHVLHWRLLKLYLSLGVKVVKVHRAIKFKQAPIFHAYIDKNTKLRAQSTSELYRDLFKLYNNSLYGKSVENLKKRMNLRLCNSDEKMIVYASKPTFR 748 HSP 3 Score: 108.997 bits (271), Expect = 2.044e-118 Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = -3 Query: 934 HILKYGINRFPQ*NISCIPTASEKVLTLIDHCKKITIKFIDSYQFINDSLVRAVKTLTNLPLTNSVFQGCIINSKGIFPYDYAESLEFLK 1203 HILKYG+N F ++ IPT +EK ++LI + K+ ++FIDS QF+N SL +AVKTLT+LPLT+ VF G I +K IFPYD+A+SLE L+ Sbjct: 365 HILKYGLNNFSSWELNIIPTTTEKFISLIAYINKLPVRFIDSMQFVNSSLAKAVKTLTDLPLTDPVFDGAIFRAKAIFPYDFAKSLEVLE 454
BLAST of SMED30033802 vs. Planmine SMEST
Match: SMESG000076680.1 (SMESG000076680.1) HSP 1 Score: 284.263 bits (726), Expect = 6.425e-117 Identity = 144/221 (65.16%), Postives = 172/221 (77.83%), Query Frame = -2 Query: 293 LRILEETYELPPIWNGVNKNEYEKAQNIWTETHCETLLDYMMIYLKLDVYLLADYFEQFRNKSIAHNELESLNFFGIPGVSWSSVLMTLEWLI*LLQDMEMYCFYERGIRGGLIFVNKHYVKSDENTELLYIDINNLYGWALSQPLPCGEFEWIHQDLENILEQCKLMGLENL--GYTVEVDIDIPDEIHDFLDDLPDAAEKMCLKDTKVRKLLLTHEKKE 949 L LE TYELPPIW GV++ EYEK+Q IWTET C LLDYMMIYLKLDV+LLAD+F+QFR KSIAHN LE LN+FGIPG+ WSS L+TL+ I QDME+Y FYE IRGGL FVNKH+VK+DE TELLYIDINNLY WALSQPLPCG+F WI ++IL C + LE+L GYT+EV+++IP ++H LD+ AAEKM + +KV KLLLTH K+ Sbjct: 1018 LEFLENTYELPPIWEGVSEVEYEKSQLIWTETKCVNLLDYMMIYLKLDVFLLADFFQQFRAKSIAHNSLEPLNYFGIPGMFWSSALITLDKPI--EQDMEIYNFYEGDIRGGLTFVNKHFVKTDETTELLYIDINNLYDWALSQPLPCGKFSWILDGFDSILSDCFSLNLESLSYGYTLEVNLEIPSDLHYKLDEFSIAAEKMKPEGSKVEKLLLTHYPKK 1236 HSP 2 Score: 120.168 bits (300), Expect = 6.425e-117 Identity = 63/99 (63.64%), Postives = 86/99 (86.87%), Query Frame = -1 Query: 3 KRNYVVHWRLLKIFMMLGVQILKIHIAIKFNQAPIFKKYVDTNTKFRAESRSDLDKSYYKFLNNSLYGKTVEXXXXXXXXXLCNSKTKMMTYASKRSFR 299 K+NYV+HWRLLK+++ L V++ ++ A++F Q+PIFK Y+DTNT+ RA+S + LDK+YYK LNNSLYGKTVENLKKR+NLRLCN++ KM+TYASK +F+ Sbjct: 1235 KKNYVIHWRLLKLYLSLSVKVTHVNRAVRFKQSPIFKNYMDTNTELRAKSTNTLDKNYYKLLNNSLYGKTVENLKKRMNLRLCNTEKKMITYASKPTFQ 1333 HSP 3 Score: 58.151 bits (139), Expect = 6.425e-117 Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = -3 Query: 934 SLVRAVKTLTNLPLTNSVFQGCIINSKGIFPYDYAESLEFLK 1059 +L AVKTLT+LPLT SVF G I+N K IFPY++A SLEFL+ Sbjct: 981 NLRGAVKTLTSLPLTKSVFTGTIVNEKCIFPYNFATSLEFLE 1022
BLAST of SMED30033802 vs. Planmine SMEST
Match: SMESG000076680.1 (SMESG000076680.1) HSP 1 Score: 284.263 bits (726), Expect = 6.588e-117 Identity = 144/221 (65.16%), Postives = 172/221 (77.83%), Query Frame = -2 Query: 293 LRILEETYELPPIWNGVNKNEYEKAQNIWTETHCETLLDYMMIYLKLDVYLLADYFEQFRNKSIAHNELESLNFFGIPGVSWSSVLMTLEWLI*LLQDMEMYCFYERGIRGGLIFVNKHYVKSDENTELLYIDINNLYGWALSQPLPCGEFEWIHQDLENILEQCKLMGLENL--GYTVEVDIDIPDEIHDFLDDLPDAAEKMCLKDTKVRKLLLTHEKKE 949 L LE TYELPPIW GV++ EYEK+Q IWTET C LLDYMMIYLKLDV+LLAD+F+QFR KSIAHN LE LN+FGIPG+ WSS L+TL+ I QDME+Y FYE IRGGL FVNKH+VK+DE TELLYIDINNLY WALSQPLPCG+F WI ++IL C + LE+L GYT+EV+++IP ++H LD+ AAEKM + +KV KLLLTH K+ Sbjct: 1000 LEFLENTYELPPIWEGVSEVEYEKSQLIWTETKCVNLLDYMMIYLKLDVFLLADFFQQFRAKSIAHNSLEPLNYFGIPGMFWSSALITLDKPI--EQDMEIYNFYEGDIRGGLTFVNKHFVKTDETTELLYIDINNLYDWALSQPLPCGKFSWILDGFDSILSDCFSLNLESLSYGYTLEVNLEIPSDLHYKLDEFSIAAEKMKPEGSKVEKLLLTHYPKK 1218 HSP 2 Score: 120.168 bits (300), Expect = 6.588e-117 Identity = 63/99 (63.64%), Postives = 86/99 (86.87%), Query Frame = -1 Query: 3 KRNYVVHWRLLKIFMMLGVQILKIHIAIKFNQAPIFKKYVDTNTKFRAESRSDLDKSYYKFLNNSLYGKTVEXXXXXXXXXLCNSKTKMMTYASKRSFR 299 K+NYV+HWRLLK+++ L V++ ++ A++F Q+PIFK Y+DTNT+ RA+S + LDK+YYK LNNSLYGKTVENLKKR+NLRLCN++ KM+TYASK +F+ Sbjct: 1217 KKNYVIHWRLLKLYLSLSVKVTHVNRAVRFKQSPIFKNYMDTNTELRAKSTNTLDKNYYKLLNNSLYGKTVENLKKRMNLRLCNTEKKMITYASKPTFQ 1315 HSP 3 Score: 57.7658 bits (138), Expect = 6.588e-117 Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = -3 Query: 934 SLVRAVKTLTNLPLTNSVFQGCIINSKGIFPYDYAESLEFLK 1059 +L AVKTLT+LPLT SVF G I+N K IFPY++A SLEFL+ Sbjct: 963 NLRGAVKTLTSLPLTKSVFTGTIVNEKCIFPYNFATSLEFLE 1004 The following BLAST results are available for this feature:
BLAST of SMED30033802 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30033802 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of SMED30033802 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30033802 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30033802 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30033802 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30033802 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30033802 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30033802 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30033802 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30033802 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30033802 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of SMED30033802 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30033802 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30033802 ID=SMED30033802|Name=SMED30033802|organism=Schmidtea mediterranea sexual|type=transcript|length=1205bpback to top protein sequence of SMED30033802-orf-1 >SMED30033802-orf-1 ID=SMED30033802-orf-1|Name=SMED30033802-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=130bp MEMYCFYERGIRGGLIFVNKHYVKSDENTELLYIDINNLYGWALSQPLPCback to top Annotated Terms
The following terms have been associated with this transcript:
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