Peptidase A2 domain-containing protein

Overview
NamePeptidase A2 domain-containing protein
Smed IDSMED30033801
Length (bp)1331
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Peptidase A2 domain-containing protein (SMED30033801) t-SNE clustered cells

Violin plots show distribution of expression levels for Peptidase A2 domain-containing protein (SMED30033801) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Peptidase A2 domain-containing protein (SMED30033801) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Peptidase A2 domain-containing protein (SMED30033801) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30033801

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30033801SMESG000008760.1 Contig3181GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
nervous systemSMED30033801SMESG000008760.1 dd_Smed_v4_7411_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30033801SMESG000008760.1 dd_Smed_v4_7411_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30033801SMESG000008760.1 dd_Smed_v4_7411_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of Peptidase A2 domain-containing protein vs. TrEMBL
Match: A0A5S6Q048 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.456e-16
Identity = 74/300 (24.67%), Postives = 129/300 (43.00%), Query Frame = 3 
Query:  150 KLPFFLNNSGSPKSWFLLLEAKYEFSAMSSS-NKFYQAISGLPPDTLKLLSDDLVEASISCSPYNCLKDLVIDHYKVKPDELICSYFDKNFLNDMKPSEFLNKAICQLESKHPGIVKSNDKKMRQLFISRLPSDVQKIVNGITNIELTKLADFADKLFDKKPVKPAEIVDDKLTISTLTHEVSSLKSQVQDLQEKFTQL-----ERKLSQKPNKSSQKSFMPNXXXXXXXXXXXXXXXYNDLIIFESKYYSDKNSKESKSYNDKNLNESKSHLTDKSKLCYYHVKYGAGALKCHLGCCFQ 1031
            KLP F  ++     WF   EA++  + +++S  K+Y  IS +  D++ +  DDL++ +   SPY  LK  +++ +    D+      D + + + +PS+ L     Q+     G+V       RQLF+ RLPS+VQ I+  +    + +LA  AD L        A +  +    S  + E+  L+++V  L+E+F  L      R+  Q P +SS                                         ++S  ++    S +HL+  + LCY+H  +G  A +C   C FQ
Sbjct:   18 KLPQFWPHNA--PLWFAQAEAQFALTNVTASLTKYYYTISAIS-DSVGIDIDDLLDPT-GDSPYEVLKTRLLERFTATADDKFRFLIDASGIGEQQPSQLLR----QMRRMATGVVDPQSALFRQLFLQRLPSNVQLILKAMPTATVDELAKVADNLLPISQTMNAVVHPEA---SRESSELEMLRAEVAALREQFRTLIVSSPTRRSRQSPGRSS-----------------------------------------TRSVANRQRRNSPAHLS-PTALCYFHRTFGERARRCRPPCDFQ 264
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BLAST of Peptidase A2 domain-containing protein vs. TrEMBL
Match: A0A085LNY4 (Uncharacterized protein OS=Trichuris suis OX=68888 GN=M513_12448 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.768e-16
Identity = 74/297 (24.92%), Postives = 127/297 (42.76%), Query Frame = 3 
Query:  150 KLPFFLNNSGSPKSWFLLLEAKYEFSAMSSS-NKFYQAISGLPPDTLKLLSDDLVEASISCSPYNCLKDLVIDHYKVKPDELICSYFDKNFLNDMKPSEFLNKAICQLESKHPGIVKSNDKKMRQLFISRLPSDVQKIVNGITNIELTKLADFADKLFDKKPVKPAEIVDDKLTISTL--THEVSSLKSQVQDLQEKFTQLERKLSQKPNKSSQKSFMPNXXXXXXXXXXXXXXXYNDLIIFESKYYSDKNSKESKSYNDKNLNESKSHLTDKSKLCYYHVKYGAGALKCHLGCCFQ 1031
            KLP F   S  P++WF   EA++  S +++S  K+Y  I+ LPP  +    DDL++ +   +PY  LK  +++ +    +E   S  D + ++D +P++ L      +     G+V       RQLF+ RLP  VQ I+  I   ++ +LA  ADK+        ++ V   +   T   + E+ +L+ +V +L+E+   L    +    + S  +  P  R                 +I   +  S +N                      S +CYYH  +G  A +C   C FQ
Sbjct:   18 KLPQFWPQS--PRTWFAQAEAQFALSNVTASLTKYYYTIASLPP-AIGSDVDDLLD-NKGDTPYEVLKAKLLERFTTSTEEKFHSLMDASPIDDQRPTQLLR----HMRRMATGVVDPQSSMFRQLFLQRLPPSVQLILKAIPTADVDELARTADKMLPM-----SQSVSTLVKTGTFHESAELQALRDEVTELREQVRSLAITPTPPRGRRSSSTSPPPLR-----------------VINRRRQRSPQNFPS-------------------SPICYYHRTFGRQARRCRPPCTFQ 265
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BLAST of Peptidase A2 domain-containing protein vs. TrEMBL
Match: A0A5S6Q073 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.656e-15
Identity = 74/300 (24.67%), Postives = 128/300 (42.67%), Query Frame = 3 
Query:  150 KLPFFLNNSGSPKSWFLLLEAKYEFSAMSSS-NKFYQAISGLPPDTLKLLSDDLVEASISCSPYNCLKDLVIDHYKVKPDELICSYFDKNFLNDMKPSEFLNKAICQLESKHPGIVKSNDKKMRQLFISRLPSDVQKIVNGITNIELTKLADFADKLFDKKPVKPAEIVDDKLTISTLTHEVSSLKSQVQDLQEKFTQL-----ERKLSQKPNKSSQKSFMPNXXXXXXXXXXXXXXXYNDLIIFESKYYSDKNSKESKSYNDKNLNESKSHLTDKSKLCYYHVKYGAGALKCHLGCCFQ 1031
            KLP F  ++     WF   EA++  + +++S  K+Y  IS +  D++ +  DDL++ +   SPY  LK  +++ +    D+      D + + + +PS+ L     Q+     G+V       RQLF+ RLPS+VQ I   +    + +LA  AD L        A +  +    S  + E+  L+++V  L+E+F  L      R+  Q P +SS                                         ++S  ++    S +HL+  + LCY+H  +G  A +C   C FQ
Sbjct:   18 KLPQFWPHNA--PLWFAQAEAQFALTNVTASLTKYYYTISAIS-DSVGIDIDDLLDPT-GDSPYEVLKTRLLERFTATADDKFRFLIDASGIGEQQPSQLLR----QMRRMATGVVDPQSALFRQLFLQRLPSNVQLIPKAMPTATVDELAKVADNLLPISQTMNAVVHPEA---SRESSELEMLRAEVAALREQFRTLIVSSPTRRSRQSPGRSS-----------------------------------------TRSVANRQRRNSPAHLS-PTALCYFHRTFGERARRCRPPCDFQ 264
[Close]
BLAST of Peptidase A2 domain-containing protein vs. TrEMBL
Match: A0A5S6Q533 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.139e-15
Identity = 74/300 (24.67%), Postives = 128/300 (42.67%), Query Frame = 3 
Query:  150 KLPFFLNNSGSPKSWFLLLEAKYEFSAMSSS-NKFYQAISGLPPDTLKLLSDDLVEASISCSPYNCLKDLVIDHYKVKPDELICSYFDKNFLNDMKPSEFLNKAICQLESKHPGIVKSNDKKMRQLFISRLPSDVQKIVNGITNIELTKLADFADKLFDKKPVKPAEIVDDKLTISTLTHEVSSLKSQVQDLQEKFTQL-----ERKLSQKPNKSSQKSFMPNXXXXXXXXXXXXXXXYNDLIIFESKYYSDKNSKESKSYNDKNLNESKSHLTDKSKLCYYHVKYGAGALKCHLGCCFQ 1031
            KLP F  ++     WF   EA++  + +++S  K+Y  IS +  D++ +  DDL++ +   SPY  LK  +++ +    D+      D + + + +PS+ L     Q+     G+V       RQLF+ RLPS+VQ I+  +    + +LA  AD L    P+            S  + E+  L+++V  L+E+F  L      R+  Q P +SS                                         ++S  ++    S +HL+  + LCY+H  +G  A +C   C FQ
Sbjct:   18 KLPQFWPHNAP--LWFAQAEAQFALTNVTASLTKYYYTISAIS-DSVGIDIDDLLDPT-GDSPYEVLKTRLLERFTATADDKFRFLIDASGIGEQQPSQLLR----QMRRMATGVVDPQSALFRQLFLQRLPSNVQLILKAMPTATVDELAKVADNLL---PISQTMNAVVHPEASRESSELEMLRAEVAALREQFRTLIVSSPTRRSRQSPGRSS-----------------------------------------TRSVANRQRRNSPAHLS-PTALCYFHRTFGERARRCRPPCDFQ 264
[Close]
BLAST of Peptidase A2 domain-containing protein vs. TrEMBL
Match: A0A5S6Q4U7 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.217e-14
Identity = 74/300 (24.67%), Postives = 129/300 (43.00%), Query Frame = 3 
Query:  150 KLPFFLNNSGSPKSWFLLLEAKYEFSAMSSS-NKFYQAISGLPPDTLKLLSDDLVEASISCSPYNCLKDLVIDHYKVKPDELICSYFDKNFLNDMKPSEFLNKAICQLESKHPGIVKSNDKKMRQLFISRLPSDVQKIVNGITNIELTKLADFADKLFDKKPVKPAEIVDDKLTISTLTHEVSSLKSQVQDLQEKFTQL-----ERKLSQKPNKSSQKSFMPNXXXXXXXXXXXXXXXYNDLIIFESKYYSDKNSKESKSYNDKNLNESKSHLTDKSKLCYYHVKYGAGALKCHLGCCFQ 1031
            KLP F  ++     WF   EA++  + +++S  K+Y  IS +  D++ +  DDL++ +   SPY  LK  +++ +    D+      D + + + +PS+ L     Q+     G+V       RQLF+ RLPS+VQ I+  +    + +LA  AD L        A +  +    S  + E+  L+++V  L+E+F  L      R+  Q P +SS                                         ++S  ++    S +HL+  + LCY+H  +G  A +C   C FQ
Sbjct:   18 KLPQFWPHNAP--LWFAQAEAQFALTNVTASLTKYYYTISAIS-DSVGIDIDDLLDPT-GDSPYEVLKTRLLERFTATADDKFRFLIDASGIGEQQPSQLLR----QMRRMATGVVDPQSALFRQLFLQRLPSNVQLILKAMPTATVDELAKVADNLLPISQTMNAVVHPEA---SRESSELEMLRAEVAALREQFRTLIVSSPTRRSRQSPGRSS-----------------------------------------TRSVANRQRRNSPAHLS-PTALCYFHRTFGERARRCRPPCDFQ 264
[Close]
BLAST of Peptidase A2 domain-containing protein vs. Planmine SMEST
Match: SMESG000008760.1 (SMESG000008760.1)

HSP 1 Score: 663.685 bits (1711), Expect = 0.000e+0
Identity = 343/344 (99.71%), Postives = 343/344 (99.71%), Query Frame = 3 
Query:  102 MEFMNIKSSRGQENIDKLPFFLNNSGSPKSWFLLLEAKYEFSAMSSSNKFYQAISGLPPDTLKLLSDDLVEASISCSPYNCLKDLVIDHYKVKPDELICSYFDKNFLNDMKPSEFLNKAICQLESKHPGIVKSNDKKMRQLFISRLPSDVQKIVNGITNIELTKLADFADKLFDKKPVKPAEIVDDKLTISTLTHEVSSLKSQVQDLQEKFTQLERKLSQKPNKSSQKSFMPNXXXXXXXXXXXXXXXYNDLIIFESKYYSDKNSKESKSYNDKNLNESKSHLTDKSKLCYYHVKYGAGALKCHLGCCFQPKPQGLKVSNICIYHARNSTDPSQCLPGCTNYSR 1133
            MEFMNIKSSRGQENIDKLPFFLNNSGSPKSWFLLLEAKYEFSAMSSSNKFYQAISGLPPDTLKLLSDDLVEASISCSPYNCLKDLVIDHYKVKPDELICSYFDKNFLNDMKPSEFLNKAICQLESKHPGIVKSNDKKMRQLFISRLPSDVQKIVNGITNIELTKLADFADKLFDKKPVKPAEIVDDKLTISTLTHEVSSLKSQVQDLQEKFTQLERKLSQKPNKSSQKSFM NSRPSSPKGSSESKTSYNDLIIFESKYYSDKNSKESKSYNDKNLNESKSHLTDKSKLCYYHVKYGAGALKCHLGCCFQPKPQGLKVSNICIYHARNSTDPSQCLPGCTNYSR
Sbjct:    1 MEFMNIKSSRGQENIDKLPFFLNNSGSPKSWFLLLEAKYEFSAMSSSNKFYQAISGLPPDTLKLLSDDLVEASISCSPYNCLKDLVIDHYKVKPDELICSYFDKNFLNDMKPSEFLNKAICQLESKHPGIVKSNDKKMRQLFISRLPSDVQKIVNGITNIELTKLADFADKLFDKKPVKPAEIVDDKLTISTLTHEVSSLKSQVQDLQEKFTQLERKLSQKPNKSSQKSFMQNSRPSSPKGSSESKTSYNDLIIFESKYYSDKNSKESKSYNDKNLNESKSHLTDKSKLCYYHVKYGAGALKCHLGCCFQPKPQGLKVSNICIYHARNSTDPSQCLPGCTNYSR 344
The following BLAST results are available for this feature:
BLAST of Peptidase A2 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Peptidase A2 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Peptidase A2 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Peptidase A2 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Peptidase A2 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Peptidase A2 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Peptidase A2 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Peptidase A2 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5S6Q0486.456e-1624.67Uncharacterized protein OS=Trichuris muris OX=7041... [more]
A0A085LNY46.768e-1624.92Uncharacterized protein OS=Trichuris suis OX=68888... [more]
A0A5S6Q0731.656e-1524.67Uncharacterized protein OS=Trichuris muris OX=7041... [more]
A0A5S6Q5334.139e-1524.67Uncharacterized protein OS=Trichuris muris OX=7041... [more]
A0A5S6Q4U71.217e-1424.67Uncharacterized protein OS=Trichuris muris OX=7041... [more]
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BLAST of Peptidase A2 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Peptidase A2 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Peptidase A2 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Peptidase A2 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Peptidase A2 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Peptidase A2 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000008760.10.000e+099.71SMESG000008760.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30033801 ID=SMED30033801|Name=Peptidase A2 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1331bp
TTTTAACTAGTCTTACTTTTGAAATATAATTTTAAATAATTTCTTGGATA
ATTTACATCCTTCTTTTAAAAGATTTTCTTCATTTTCTTCCTTAATCCTA
AATGGAATTTATGAACATCAAATCTTCAAGAGGACAAGAAAACATTGATA
AACTTCCATTTTTTCTTAATAATTCTGGTTCTCCAAAATCATGGTTTCTA
CTTCTTGAAGCCAAATATGAGTTTTCTGCTATGTCCTCATCGAATAAATT
TTATCAAGCTATATCGGGTTTACCTCCAGATACACTTAAACTATTATCAG
ATGATTTAGTCGAAGCTTCTATATCTTGCAGTCCATACAATTGTTTGAAA
GACTTGGTTATAGATCACTATAAAGTCAAGCCTGATGAATTAATATGTTC
ATATTTTGATAAAAATTTTCTTAACGATATGAAACCTTCTGAATTTTTAA
ATAAAGCCATATGTCAACTAGAATCTAAACATCCAGGTATAGTTAAAAGC
AATGATAAAAAAATGCGACAGCTATTTATTTCAAGATTGCCTTCTGATGT
TCAAAAAATTGTAAATGGTATAACAAATATTGAATTAACAAAATTAGCGG
ATTTCGCTGATAAATTATTTGACAAAAAGCCTGTAAAACCTGCTGAAATT
GTGGATGACAAATTGACAATTTCTACTTTAACGCACGAGGTATCATCTTT
GAAATCTCAGGTTCAGGATCTTCAAGAAAAATTCACACAATTAGAACGGA
AACTAAGTCAAAAACCAAACAAATCTTCTCAAAAATCTTTTATGCCAAAC
TCACGGCCATCTTCTCCTAAAGGTTCATCTGAATCTAAAACTTCTTATAA
TGACTTAATTATTTTCGAATCAAAATATTACAGTGATAAAAATTCAAAAG
AGTCTAAGTCTTATAACGATAAAAATCTTAATGAATCTAAATCACATCTT
ACTGATAAAAGCAAATTATGTTATTATCATGTGAAATATGGAGCTGGCGC
TTTAAAGTGTCATCTTGGTTGCTGTTTTCAGCCGAAGCCTCAAGGCTTAA
AAGTATCAAATATTTGTATTTATCATGCTAGGAATAGTACTGATCCGTCA
CAATGTCTACCTGGGTGCACAAATTATTCTCGGTGATTTCTTATTATTTC
ATCTTGAATCTTCAAAACCTTAATAGGAGCACGTGACTCCTAAACTTTAT
ATGGTCTTTATTGCTTCTTACTTGATAACTTATGTTATTATATAAAATTC
CATTGTTCATGAAAATGATACATAATTCAGTTTTAATGCCGATAGATGTA
TTAGATGTAAATTTAATATAGTTTAATACAG
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protein sequence of SMED30033801-orf-1

>SMED30033801-orf-1 ID=SMED30033801-orf-1|Name=SMED30033801-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=345bp
MEFMNIKSSRGQENIDKLPFFLNNSGSPKSWFLLLEAKYEFSAMSSSNKF
YQAISGLPPDTLKLLSDDLVEASISCSPYNCLKDLVIDHYKVKPDELICS
YFDKNFLNDMKPSEFLNKAICQLESKHPGIVKSNDKKMRQLFISRLPSDV
QKIVNGITNIELTKLADFADKLFDKKPVKPAEIVDDKLTISTLTHEVSSL
KSQVQDLQEKFTQLERKLSQKPNKSSQKSFMPNSRPSSPKGSSESKTSYN
DLIIFESKYYSDKNSKESKSYNDKNLNESKSHLTDKSKLCYYHVKYGAGA
LKCHLGCCFQPKPQGLKVSNICIYHARNSTDPSQCLPGCTNYSR*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0004190aspartic-type endopeptidase activity
GO:0003676nucleic acid binding
Vocabulary: biological process
TermDefinition
GO:0006508proteolysis
GO:0015074DNA integration
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000070intestinal phagocyte
Vocabulary: INTERPRO
TermDefinition
IPR011528NERD
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 190..217
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 218..246
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..246
NoneNo IPR availablePANTHERPTHR33327FAMILY NOT NAMEDcoord: 17..194