Orphan chemoreceptor family protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30033769 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 20
Homology
BLAST of Orphan chemoreceptor family protein vs. TrEMBL
Match: A0A193KTZ7 (Orphan chemoreceptor family protein OS=Schmidtea mediterranea OX=79327 GN=ophis PE=2 SV=1) HSP 1 Score: 862.062 bits (2226), Expect = 0.000e+0 Identity = 476/478 (99.58%), Postives = 476/478 (99.58%), Query Frame = 3 Query: 5394 MVFCRLITSIPLAIILVFITILAILGNIFLFTVICQSRKAHKKSYSHYXXXXXXXXXXXXXXXXKEFIERFYQKTHKINNLYEQSEIMCKLEHFIRFSCFFISGIATVFLTVERFLIVYWPVRGRLLCGGNRALIIIFGIIVFSCSAQSFRLVFVEQDSGVCVFKMNQKINHFILSCYSSGLFVYVIPAVVILVFNILILMKLQKSNNKTKCQKCVKERLNAFNILSAKFWKSFRFGKMDLSTNRRQLNEYDSSGPSDRSTSTCDGSVACSKCLYMRQGSAKYYLKVKRRASVILLMISFSYLICHAWNTAFTGVFXXXXXXXXXXXQNVSDNSTEKAQLKDSVLGYFRRKLCLYNDIIDMFSXXXXXXXXXXXXXXXXXXRTEFARIFQNVGRSIRNRFGIFKSQTNQKDKLRKVSKNYSVIHKNDYLKPLYYYPTSECCVHSNLEPRKIIYQKNSYQSVRSCPLKYQDSSQSSTIN 6827 MVFCRLITSIPLAIILVFITILAILGNIFLFTVICQSRKAHKKSYSHYLTLLTITDSLSILFLLKEFIERFYQKTHKINNLYEQSEIMCKLEHFIRFSCFFISGIATVFLTVERFLIVYWPVRGRLLCGGNRALIIIFGIIVFSCSAQSFRLVFVEQDSGVCVFKMNQKINHFILSCYSSGLFVYVIPAVVILVFNILILMKLQKSNNKTKCQKCVKERLNAFNILSAKFWKSFRFGKMDLSTNRRQLNEYDSSGPSDRSTST DGSVACSKCLYMRQGSAKYYLKVKRRASVILLMISFSYLICHAWNTAFTGVFLRYYYLYAARLQNVSDNSTEKAQLKDSVLGYFRRKLCLYNDIIDMFSIIGYGNNFYIYYIFGNIFRTEFARIFQNVGRSIRNRFG FKSQTNQKDKLRKVSKNYSVIHKNDYLKPLYYYPTSECCVHSNLEPRKIIYQKNSYQSVRSCPLKYQDSSQSSTIN Sbjct: 1 MVFCRLITSIPLAIILVFITILAILGNIFLFTVICQSRKAHKKSYSHYLTLLTITDSLSILFLLKEFIERFYQKTHKINNLYEQSEIMCKLEHFIRFSCFFISGIATVFLTVERFLIVYWPVRGRLLCGGNRALIIIFGIIVFSCSAQSFRLVFVEQDSGVCVFKMNQKINHFILSCYSSGLFVYVIPAVVILVFNILILMKLQKSNNKTKCQKCVKERLNAFNILSAKFWKSFRFGKMDLSTNRRQLNEYDSSGPSDRSTSTYDGSVACSKCLYMRQGSAKYYLKVKRRASVILLMISFSYLICHAWNTAFTGVFLRYYYLYAARLQNVSDNSTEKAQLKDSVLGYFRRKLCLYNDIIDMFSIIGYGNNFYIYYIFGNIFRTEFARIFQNVGRSIRNRFGTFKSQTNQKDKLRKVSKNYSVIHKNDYLKPLYYYPTSECCVHSNLEPRKIIYQKNSYQSVRSCPLKYQDSSQSSTIN 478
BLAST of Orphan chemoreceptor family protein vs. TrEMBL
Match: A0A498M9K3 (PiggyBac transposable element-derived 2-like protein OS=Labeo rohita OX=84645 GN=ROHU_008556 PE=4 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 2.528e-7 Identity = 32/70 (45.71%), Postives = 41/70 (58.57%), Query Frame = -3 Query: 276 STDLENKKHKAPTACVPPLDVRTDQIAH*VIY*NPRKRCKLLGFRGFSHFKCN*CKVHLCLTKDKNCFLK 485 S+D E KK + PTA +P DVR D AH +I + RC++ G +G + KC C HLC T NCFLK Sbjct: 121 SSDYETKKRQGPTAPIPIPDVRLDATAHWIIMSEKKGRCRVPGCKGTPNAKCRKCNAHLCFTSTTNCFLK 190
BLAST of Orphan chemoreceptor family protein vs. TrEMBL
Match: A0A1B0A8N8 (Uncharacterized protein OS=Glossina pallidipes OX=7398 PE=4 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 5.072e-7 Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = -3 Query: 282 DLENKKHKAPTACVPPLDVRTDQIAH*VIY*NPRKRCKLLGFRGFSHFKCN*CKVHLCLTKDKNCF 479 ++E KKH+ PT +PP D+RTD I H + + RCKL G +GFS +C CKV LC K++NCF Sbjct: 186 EIEAKKHRGPTKPIPPKDIRTDGIGHDEKRCSSKNRCKLPGCKGFSRTECIKCKVTLCHNKNRNCF 251
BLAST of Orphan chemoreceptor family protein vs. TrEMBL
Match: A0A1A9VFM5 (DDE_Tnp_1_7 domain-containing protein OS=Glossina austeni OX=7395 PE=4 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.877e-7 Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = -3 Query: 282 STDLENKKHKAPTACVPPLDVRTDQIAH*VIY*NPRKRCKLLGFRGFSHFKCN*CKVHLCLTKDKNCF 485 ++E KKH+ PT +PP DVRTD I H N + RCKL G +GFS +C CKV LC K++NCF Sbjct: 361 EMEIEAKKHRGPTKPIPPKDVRTDGIGHDEKRCNSKNRCKLPGCKGFSRTECIKCKVTLCHNKNRNCF 428
BLAST of Orphan chemoreceptor family protein vs. TrEMBL
Match: A0A3N0YMG2 (Uncharacterized protein OS=Anabarilius grahami OX=495550 GN=DPX16_1265 PE=4 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 3.183e-6 Identity = 30/70 (42.86%), Postives = 38/70 (54.29%), Query Frame = -3 Query: 276 STDLENKKHKAPTACVPPLDVRTDQIAH*VIY*NPRKRCKLLGFRGFSHFKCN*CKVHLCLTKDKNCFLK 485 + + E K+ K P A +P DVR D AH +I + RCK+ G G KC C VHLC T NCFL+ Sbjct: 39 AGEYEEKRRKGPAAPIPVPDVRLDATAHWMIMAEKKGRCKVPGCTGTPKAKCRKCDVHLCFTSTSNCFLR 108
BLAST of Orphan chemoreceptor family protein vs. Ensembl Medaka
Match: ENSORLT00000027873.1 (piggyBac transposable element-derived protein 3 [Source:NCBI gene;Acc:101162175]) HSP 1 Score: 58.9214 bits (141), Expect = 5.350e-8 Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = -3 Query: 276 DLENKKHKAPTACVPPLDVRTDQIAH*VIY*NPRKRCKLLGFRGFSHFKCN*CKVHLCLTKDKNCFLK 479 + + KK + P +P +VRTD + H + N R+RCK +G + KC C +HLCL ++ NCFL+ Sbjct: 521 EFQKKKRRGPAKAIPAQEVRTDAVGHWPVVENGRQRCKFPQCKGQTVIKCGKCNIHLCLKRNSNCFLE 588
BLAST of Orphan chemoreceptor family protein vs. Ensembl Medaka
Match: ENSORLT00000031528.1 (piggyBac transposable element-derived protein 3 [Source:NCBI gene;Acc:101162175]) HSP 1 Score: 58.9214 bits (141), Expect = 5.350e-8 Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = -3 Query: 276 DLENKKHKAPTACVPPLDVRTDQIAH*VIY*NPRKRCKLLGFRGFSHFKCN*CKVHLCLTKDKNCFLK 479 + + KK + P +P +VRTD + H + N R+RCK +G + KC C +HLCL ++ NCFL+ Sbjct: 521 EFQKKKRRGPAKAIPAQEVRTDAVGHWPVVENGRQRCKFPQCKGQTVIKCGKCNIHLCLKRNSNCFLE 588
BLAST of Orphan chemoreceptor family protein vs. Ensembl Medaka
Match: ENSORLT00000038512.1 (piggyBac transposable element-derived protein 2-like [Source:NCBI gene;Acc:111947160]) HSP 1 Score: 51.6026 bits (122), Expect = 8.943e-6 Identity = 24/70 (34.29%), Postives = 37/70 (52.86%), Query Frame = -3 Query: 276 STDLENKKHKAPTACVPPLDVRTDQIAH*VIY*NPRKRCKLLGFRGFSHFKCN*CKVHLCLTKDKNCFLK 485 + + + K+ + P +P DVR D AH ++ + RCK+ G +G KC C + LC T NCFL+ Sbjct: 483 AGEYKEKRRRGPATPIPVADVRLDATAHWMVMDEKKGRCKVPGCKGTPKAKCQKCDISLCFTSTSNCFLR 552
BLAST of Orphan chemoreceptor family protein vs. Planmine SMEST
Match: SMESG000076072.1 (SMESG000076072.1) HSP 1 Score: 818.535 bits (2113), Expect = 0.000e+0 Identity = 459/481 (95.43%), Postives = 460/481 (95.63%), Query Frame = 3 Query: 5385 KQLMVFCRLITSIPLAIILVFITILAILGNIFLFTVICQSRKAHKKSYSHYXXXXXXXXXXXXXXXXKEFIERFYQKTHKINNLYEQSEIMCKLEHFIRFSCFFISGIATVFLTVERFLIVYWPVRGRLLCGGNRALIIIFGIIVFSCSAQSFRLVFVEQDSGVCVFKMNQKINHFILSCYSSGLFVYVIPAVVILVFNILILMKLQKSNNKTKCQKCVKERLNAFNILSAKFWKSFRFGKMDLSTNRRQLNEYDSSGPSDRSTSTCDGSVACSKCLYMRQGSAKYYLKVKRRASVILLMISFSYLICHAWNTAFTGVFXXXXXXXXXXXQNVSDNSTEKAQLKDSVLGYFRRKLCLYNDIIDMFSXXXXXXXXXXXXXXXXXXRTEFARIFQNVGRSIRNRFGIFKSQTNQKDKLRKVSKNYSVIHKNDYLKPLYYYPTSECCVHSNLEPRKIIYQKNSYQSVRSCPLKYQDSSQSSTIN 6827 KQLMVFCRLITSIPLAIILVFITILAILGNIFLFTVICQSRKAHKKSYSHYLTLLTITDSLSILFLLKEFIERFYQKTHKINNLYEQSEIMCKLEHFIRFSCFFISGIATVFLTVERFLIVYWPVRGRLLCGGNRALIIIFGIIVFSCSAQSFRLVFVEQDSGVCVFKMNQKINHFILSCYSSGLFVYVIPAVVILVFNILILMKLQKSNNKTKCQKCVKERLNAFNILSAKFWKSFRFGKMDLSTNRRQLNEYDSSGPSDRSTST DGSVACSKCLYMRQGSA +YLICHAWNTAFTGVFLRYYYLYAARLQNVSDNSTEKAQLKDSVLGYFRRKLCLYNDIIDMFSIIGYGNNFYIYYIFGNIFRTEFARIFQNVGRSIRNRFG FKSQTNQKDKLRKVSKNYSVIHKNDYLKPLYYYPTSECCVHSNLEPRKIIYQKNSYQSVRSCPLKYQDSSQSSTIN Sbjct: 20 KQLMVFCRLITSIPLAIILVFITILAILGNIFLFTVICQSRKAHKKSYSHYLTLLTITDSLSILFLLKEFIERFYQKTHKINNLYEQSEIMCKLEHFIRFSCFFISGIATVFLTVERFLIVYWPVRGRLLCGGNRALIIIFGIIVFSCSAQSFRLVFVEQDSGVCVFKMNQKINHFILSCYSSGLFVYVIPAVVILVFNILILMKLQKSNNKTKCQKCVKERLNAFNILSAKFWKSFRFGKMDLSTNRRQLNEYDSSGPSDRSTSTYDGSVACSKCLYMRQGSA-------------------NYLICHAWNTAFTGVFLRYYYLYAARLQNVSDNSTEKAQLKDSVLGYFRRKLCLYNDIIDMFSIIGYGNNFYIYYIFGNIFRTEFARIFQNVGRSIRNRFGTFKSQTNQKDKLRKVSKNYSVIHKNDYLKPLYYYPTSECCVHSNLEPRKIIYQKNSYQSVRSCPLKYQDSSQSSTIN 481
BLAST of Orphan chemoreceptor family protein vs. Planmine SMEST
Match: SMESG000076072.1 (SMESG000076072.1) HSP 1 Score: 813.142 bits (2099), Expect = 0.000e+0 Identity = 456/478 (95.40%), Postives = 457/478 (95.61%), Query Frame = 3 Query: 5394 MVFCRLITSIPLAIILVFITILAILGNIFLFTVICQSRKAHKKSYSHYXXXXXXXXXXXXXXXXKEFIERFYQKTHKINNLYEQSEIMCKLEHFIRFSCFFISGIATVFLTVERFLIVYWPVRGRLLCGGNRALIIIFGIIVFSCSAQSFRLVFVEQDSGVCVFKMNQKINHFILSCYSSGLFVYVIPAVVILVFNILILMKLQKSNNKTKCQKCVKERLNAFNILSAKFWKSFRFGKMDLSTNRRQLNEYDSSGPSDRSTSTCDGSVACSKCLYMRQGSAKYYLKVKRRASVILLMISFSYLICHAWNTAFTGVFXXXXXXXXXXXQNVSDNSTEKAQLKDSVLGYFRRKLCLYNDIIDMFSXXXXXXXXXXXXXXXXXXRTEFARIFQNVGRSIRNRFGIFKSQTNQKDKLRKVSKNYSVIHKNDYLKPLYYYPTSECCVHSNLEPRKIIYQKNSYQSVRSCPLKYQDSSQSSTIN 6827 MVFCRLITSIPLAIILVFITILAILGNIFLFTVICQSRKAHKKSYSHYLTLLTITDSLSILFLLKEFIERFYQKTHKINNLYEQSEIMCKLEHFIRFSCFFISGIATVFLTVERFLIVYWPVRGRLLCGGNRALIIIFGIIVFSCSAQSFRLVFVEQDSGVCVFKMNQKINHFILSCYSSGLFVYVIPAVVILVFNILILMKLQKSNNKTKCQKCVKERLNAFNILSAKFWKSFRFGKMDLSTNRRQLNEYDSSGPSDRSTST DGSVACSKCLYMRQGSA +YLICHAWNTAFTGVFLRYYYLYAARLQNVSDNSTEKAQLKDSVLGYFRRKLCLYNDIIDMFSIIGYGNNFYIYYIFGNIFRTEFARIFQNVGRSIRNRFG FKSQTNQKDKLRKVSKNYSVIHKNDYLKPLYYYPTSECCVHSNLEPRKIIYQKNSYQSVRSCPLKYQDSSQSSTIN Sbjct: 1 MVFCRLITSIPLAIILVFITILAILGNIFLFTVICQSRKAHKKSYSHYLTLLTITDSLSILFLLKEFIERFYQKTHKINNLYEQSEIMCKLEHFIRFSCFFISGIATVFLTVERFLIVYWPVRGRLLCGGNRALIIIFGIIVFSCSAQSFRLVFVEQDSGVCVFKMNQKINHFILSCYSSGLFVYVIPAVVILVFNILILMKLQKSNNKTKCQKCVKERLNAFNILSAKFWKSFRFGKMDLSTNRRQLNEYDSSGPSDRSTSTYDGSVACSKCLYMRQGSA-------------------NYLICHAWNTAFTGVFLRYYYLYAARLQNVSDNSTEKAQLKDSVLGYFRRKLCLYNDIIDMFSIIGYGNNFYIYYIFGNIFRTEFARIFQNVGRSIRNRFGTFKSQTNQKDKLRKVSKNYSVIHKNDYLKPLYYYPTSECCVHSNLEPRKIIYQKNSYQSVRSCPLKYQDSSQSSTIN 459 The following BLAST results are available for this feature:
BLAST of Orphan chemoreceptor family protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Orphan chemoreceptor family protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Orphan chemoreceptor family protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Orphan chemoreceptor family protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Orphan chemoreceptor family protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Orphan chemoreceptor family protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Orphan chemoreceptor family protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Orphan chemoreceptor family protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Orphan chemoreceptor family protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Orphan chemoreceptor family protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Orphan chemoreceptor family protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Orphan chemoreceptor family protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Orphan chemoreceptor family protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 3
BLAST of Orphan chemoreceptor family protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30033769 ID=SMED30033769|Name=Orphan chemoreceptor family protein|organism=Schmidtea mediterranea sexual|type=transcript|length=6949bpback to top protein sequence of SMED30033769-orf-1 >SMED30033769-orf-1 ID=SMED30033769-orf-1|Name=SMED30033769-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=511bp MGWSKENPTYEYKKQLMVFCRLITSIPLAIILVFITILAILGNIFLFTVIback to top Annotated Terms
The following terms have been associated with this transcript:
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