60S ribosomal protein L37
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30033756 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9
Homology
BLAST of 60S ribosomal protein L37 vs. Ensembl Human
Match: RPL37 (ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]) HSP 1 Score: 56.9954 bits (136), Expect = 7.650e-19 Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 Query: 115 CAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTG---KPK 258 C YP + R +NWS KA+ R TTGTGR HL+ V+RRF++GFR G KPK Sbjct: 37 CGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPK 87 HSP 2 Score: 53.9138 bits (128), Expect = 7.650e-19 Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 MTKGT+SFGKR NKTHT CRRCG +YH+QK Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQK 31
BLAST of 60S ribosomal protein L37 vs. Ensembl Human
Match: RPL37 (ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]) HSP 1 Score: 54.299 bits (129), Expect = 1.251e-16 Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 MTKGT+SFGKR NKTHT CRRCG +YH+QK Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQK 31 HSP 2 Score: 48.9062 bits (115), Expect = 1.251e-16 Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1 Query: 115 CAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFK 231 C YP + R +NWS KA+ R TTGTGR HL+ V+RRF+ Sbjct: 37 CGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFR 75
BLAST of 60S ribosomal protein L37 vs. Ensembl Human
Match: RPL37 (ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]) HSP 1 Score: 54.6842 bits (130), Expect = 7.238e-11 Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 MTKGT+SFGKR NKTHT CRRCG +YH+QK Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQK 31
BLAST of 60S ribosomal protein L37 vs. Ensembl Celegans
Match: rpl-37 (60S ribosomal protein L37 [Source:UniProtKB/Swiss-Prot;Acc:P49622]) HSP 1 Score: 53.9138 bits (128), Expect = 6.990e-16 Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQKKK 104 MTKGT +FGK+H K+HT C+RCGKSS+HIQKK+ Sbjct: 1 MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKR 33 HSP 2 Score: 45.4394 bits (106), Expect = 6.990e-16 Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 1 Query: 91 FKRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTGKPK 258 ++K ASC Y +AK R +NW K+ RRTTGTGR HLR V+ RF+NGFR PK Sbjct: 29 IQKKRCASCGYQDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFRGTTPK 84
BLAST of 60S ribosomal protein L37 vs. Ensembl Celegans
Match: rpl-37 (60S ribosomal protein L37 [Source:UniProtKB/Swiss-Prot;Acc:P49622]) HSP 1 Score: 53.9138 bits (128), Expect = 6.990e-16 Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQKKK 104 MTKGT +FGK+H K+HT C+RCGKSS+HIQKK+ Sbjct: 1 MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKR 33 HSP 2 Score: 45.4394 bits (106), Expect = 6.990e-16 Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 1 Query: 91 FKRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTGKPK 258 ++K ASC Y +AK R +NW K+ RRTTGTGR HLR V+ RF+NGFR PK Sbjct: 29 IQKKRCASCGYQDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFRGTTPK 84
BLAST of 60S ribosomal protein L37 vs. Ensembl Celegans
Match: rpl-37 (60S ribosomal protein L37 [Source:UniProtKB/Swiss-Prot;Acc:P49622]) HSP 1 Score: 53.9138 bits (128), Expect = 6.990e-16 Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQKKK 104 MTKGT +FGK+H K+HT C+RCGKSS+HIQKK+ Sbjct: 1 MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKR 33 HSP 2 Score: 45.4394 bits (106), Expect = 6.990e-16 Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 1 Query: 91 FKRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTGKPK 258 ++K ASC Y +AK R +NW K+ RRTTGTGR HLR V+ RF+NGFR PK Sbjct: 29 IQKKRCASCGYQDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFRGTTPK 84
BLAST of 60S ribosomal protein L37 vs. Ensembl Celegans
Match: W01D2.1 (Ribosomal protein L37 [Source:UniProtKB/TrEMBL;Acc:O62388]) HSP 1 Score: 55.0694 bits (131), Expect = 3.478e-11 Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQKKKXCILRLP 125 MTKGT +FGK+H K+HT C+RCGKSS+HIQKK+ P Sbjct: 1 MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYP 40 HSP 2 Score: 48.9062 bits (115), Expect = 7.855e-9 Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1 Query: 91 FKRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTG---KPKA 261 ++K ASC YP+AK R +NW K+ RRTTGTGR HLR V+ RF+NGFR G KP+A Sbjct: 29 IQKKRCASCGYPDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFREGTTPKPRA 88
BLAST of 60S ribosomal protein L37 vs. Ensembl Celegans
Match: W01D2.1 (Ribosomal protein L37 [Source:UniProtKB/TrEMBL;Acc:O62388]) HSP 1 Score: 55.0694 bits (131), Expect = 3.478e-11 Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQKKKXCILRLP 125 MTKGT +FGK+H K+HT C+RCGKSS+HIQKK+ P Sbjct: 1 MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYP 40 HSP 2 Score: 48.9062 bits (115), Expect = 7.855e-9 Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1 Query: 91 FKRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTG---KPKA 261 ++K ASC YP+AK R +NW K+ RRTTGTGR HLR V+ RF+NGFR G KP+A Sbjct: 29 IQKKRCASCGYPDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFREGTTPKPRA 88
BLAST of 60S ribosomal protein L37 vs. Ensembl Fly
Match: RpL37a (gene:FBgn0030616 transcript:FBtr0074027) HSP 1 Score: 67.781 bits (164), Expect = 7.816e-25 Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 Query: 109 ASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTG---KPK 258 A C YP AK+R +NWS KA+ R+TTGTGR HL+ V RRF+NGFR G KPK Sbjct: 35 AQCGYPAAKLRSYNWSVKAKRRKTTGTGRMQHLKVVRRRFRNGFREGTQAKPK 87 HSP 2 Score: 62.3882 bits (150), Expect = 7.816e-25 Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 MTKGT+SFGKRHNKTHT CRRCG+SSYHIQK Sbjct: 1 MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQK 31
BLAST of 60S ribosomal protein L37 vs. Ensembl Fly
Match: RpL37a (gene:FBgn0030616 transcript:FBtr0330403) HSP 1 Score: 67.781 bits (164), Expect = 7.816e-25 Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 Query: 109 ASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTG---KPK 258 A C YP AK+R +NWS KA+ R+TTGTGR HL+ V RRF+NGFR G KPK Sbjct: 35 AQCGYPAAKLRSYNWSVKAKRRKTTGTGRMQHLKVVRRRFRNGFREGTQAKPK 87 HSP 2 Score: 62.3882 bits (150), Expect = 7.816e-25 Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 MTKGT+SFGKRHNKTHT CRRCG+SSYHIQK Sbjct: 1 MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQK 31
BLAST of 60S ribosomal protein L37 vs. Ensembl Fly
Match: RpL37b (gene:FBgn0034822 transcript:FBtr0071978) HSP 1 Score: 62.003 bits (149), Expect = 6.522e-14 Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQKKK 104 MTKGTTSFGKRHNKTHT CRRCG SSYH+QK K Sbjct: 1 MTKGTTSFGKRHNKTHTICRRCGNSSYHLQKSK 33 HSP 2 Score: 60.077 bits (144), Expect = 4.501e-13 Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1 Query: 76 NPHIIFKRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTG 249 N ++ + C YP AK R FNWS KA+GR+ GTGR +L+++ RRF+NG R G Sbjct: 24 NSSYHLQKSKCSQCGYPAAKTRSFNWSRKAKGRKAQGTGRMRYLKNLRRRFRNGLREG 81
BLAST of 60S ribosomal protein L37 vs. Ensembl Zebrafish
Match: rpl37 (ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-040625-39]) HSP 1 Score: 56.9954 bits (136), Expect = 3.313e-19 Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1 Query: 115 CAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTG 249 C YP + R +NWS KA+ R TTGTGR H++ V RRF+NGFR G Sbjct: 37 CGYPAKRKRKYNWSAKAKRRSTTGTGRMRHMKVVFRRFRNGFREG 81 HSP 2 Score: 54.299 bits (129), Expect = 3.313e-19 Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 MTKGT+SFGKR NKTHT CRRCG +YH+QK Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQK 31
BLAST of 60S ribosomal protein L37 vs. Ensembl Zebrafish
Match: rpl37 (ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-040625-39]) HSP 1 Score: 56.9954 bits (136), Expect = 3.313e-19 Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1 Query: 115 CAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTG 249 C YP + R +NWS KA+ R TTGTGR H++ V RRF+NGFR G Sbjct: 37 CGYPAKRKRKYNWSAKAKRRSTTGTGRMRHMKVVFRRFRNGFREG 81 HSP 2 Score: 54.299 bits (129), Expect = 3.313e-19 Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 MTKGT+SFGKR NKTHT CRRCG +YH+QK Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQK 31
BLAST of 60S ribosomal protein L37 vs. Ensembl Xenopus
Match: rpl37 (ribosomal protein L37 [Source:NCBI gene;Acc:100135133]) HSP 1 Score: 60.8474 bits (146), Expect = 4.087e-20 Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1 Query: 115 CAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTG---KPK 258 C YP + R +NWS KA+ R TTGTGR HL+ V+RRFKNGFR G KPK Sbjct: 37 CGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKVVYRRFKNGFREGTTPKPK 87 HSP 2 Score: 54.299 bits (129), Expect = 4.087e-20 Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 MTKGT+SFGKR NKTHT CRRCG +YH+QK Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQK 31
BLAST of 60S ribosomal protein L37 vs. Ensembl Xenopus
Match: rpl37 (ribosomal protein L37 [Source:NCBI gene;Acc:100135133]) HSP 1 Score: 51.9878 bits (123), Expect = 1.964e-16 Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 3 Query: 9 TKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 TKGT+SFGKR NKTHT CRRCG +YH+QK Sbjct: 1 TKGTSSFGKRRNKTHTLCRRCGSKAYHLQK 30 HSP 2 Score: 50.447 bits (119), Expect = 1.964e-16 Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1 Query: 115 CAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKN 234 C YP + R +NWS KA+ R TTGTGR HL+ V+RRFK+ Sbjct: 36 CGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKVVYRRFKS 75
BLAST of 60S ribosomal protein L37 vs. Ensembl Xenopus
Match: rpl37 (ribosomal protein L37 [Source:NCBI gene;Acc:100135133]) HSP 1 Score: 51.6026 bits (122), Expect = 2.739e-16 Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 3 Query: 9 TKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 TKGT+SFGKR NKTHT CRRCG +YH+QK Sbjct: 3 TKGTSSFGKRRNKTHTLCRRCGSKAYHLQK 32 HSP 2 Score: 50.447 bits (119), Expect = 2.739e-16 Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 1 Query: 91 FKRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGF 240 ++ C YP + R +NWS KA+ R TTGTGR HL+ V+RRF + F Sbjct: 30 LQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKVVYRRFNSTF 79
BLAST of 60S ribosomal protein L37 vs. Ensembl Mouse
Match: Rpl37 (ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]) HSP 1 Score: 56.9954 bits (136), Expect = 5.202e-19 Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 Query: 115 CAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTG---KPK 258 C YP + R +NWS KA+ R TTGTGR HL+ V+RRF++GFR G KPK Sbjct: 37 CGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPK 87 HSP 2 Score: 53.9138 bits (128), Expect = 5.202e-19 Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 MTKGT+SFGKR NKTHT CRRCG +YH+QK Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQK 31
BLAST of 60S ribosomal protein L37 vs. UniProt/SwissProt
Match: sp|O44125|RL37_SCHMA (60S ribosomal protein L37 OS=Schistosoma mansoni OX=6183 GN=RPL37 PE=3 SV=3) HSP 1 Score: 73.9442 bits (180), Expect = 6.437e-25 Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 1 Query: 91 FKRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTGKPK 258 ++K +SC YP A++R +NWS KA+ RRTTGTGR HL+ VHRRFK GFR+G PK Sbjct: 29 IQKKTCSSCGYPSARLRKYNWSEKAKRRRTTGTGRMLHLKRVHRRFKQGFRSGPPK 84 HSP 2 Score: 59.6918 bits (143), Expect = 6.437e-25 Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQKK 101 MTKGTTSFGKRHNK+HT CRRCG+ SYHIQKK Sbjct: 1 MTKGTTSFGKRHNKSHTQCRRCGRKSYHIQKK 32
BLAST of 60S ribosomal protein L37 vs. UniProt/SwissProt
Match: sp|Q9C0T1|RL37_EMENI (60S ribosomal protein L37 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=rpl37 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.369e-24 Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1 Query: 109 ASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTGKPKA 261 A+C YP AK R +NWS KA+ R+TTG+GR +HLR VHRRFKNGF+ G PK Sbjct: 35 ANCGYPAAKTRKYNWSEKAKRRKTTGSGRTAHLRDVHRRFKNGFQVGTPKG 85 HSP 2 Score: 59.6918 bits (143), Expect = 1.369e-24 Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 MTKGT+SFGKRHNKTHT CRRCG+ SYHIQK Sbjct: 1 MTKGTSSFGKRHNKTHTLCRRCGRRSYHIQK 31
BLAST of 60S ribosomal protein L37 vs. UniProt/SwissProt
Match: sp|Q9VXX8|RL371_DROME (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster OX=7227 GN=RpL37a PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.772e-24 Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 Query: 109 ASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTG---KPK 258 A C YP AK+R +NWS KA+ R+TTGTGR HL+ V RRF+NGFR G KPK Sbjct: 35 AQCGYPAAKLRSYNWSVKAKRRKTTGTGRMQHLKVVRRRFRNGFREGTQAKPK 87 HSP 2 Score: 62.3882 bits (150), Expect = 7.772e-24 Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 MTKGT+SFGKRHNKTHT CRRCG+SSYHIQK Sbjct: 1 MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQK 31
BLAST of 60S ribosomal protein L37 vs. UniProt/SwissProt
Match: sp|Q962S7|RL37_SPOFR (60S ribosomal protein L37 OS=Spodoptera frugiperda OX=7108 GN=RpL37 PE=3 SV=3) HSP 1 Score: 67.0106 bits (162), Expect = 4.274e-23 Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1 Query: 109 ASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTGKP 255 A C YP AK+R ++WS KA+ R+TTGTGR HL+ V RRF+NGF+ GKP Sbjct: 35 AQCGYPAAKLRSYHWSVKAKRRKTTGTGRMRHLKIVRRRFRNGFKEGKP 83 HSP 2 Score: 60.4622 bits (145), Expect = 4.274e-23 Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQKKK 104 MTKGT+SFGKR NKTHT CRRCG+SSYHIQK K Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSK 33
BLAST of 60S ribosomal protein L37 vs. UniProt/SwissProt
Match: sp|P59289|RL37A_SCHPO (60S ribosomal protein L37-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl3703 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 1.239e-22 Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 1 Query: 91 FKRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTGKP 255 ++ A C YP AK R +NW KA+ RRTTGTGR S+L+ VHR FKNGFR GKP Sbjct: 29 IQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRAGKP 83 HSP 2 Score: 54.6842 bits (130), Expect = 1.239e-22 Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 MTKGT SFG RHNK+HT CRRCGK S+HIQK Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQK 31
BLAST of 60S ribosomal protein L37 vs. TrEMBL
Match: A0A3S3SCC4 (Ribosomal protein L37 OS=Dinothrombium tinctorium OX=1965070 GN=B4U79_07401 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.784e-24 Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1 Query: 91 FKRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTGKP 255 ++K ASC YP +IR +NWS KA+ R+TTGTGR HL+ VHRRFKNGFR+GKP Sbjct: 29 IQKKRCASCGYPSRRIRKYNWSEKAKRRKTTGTGRMRHLKLVHRRFKNGFRSGKP 83 HSP 2 Score: 64.3142 bits (155), Expect = 1.784e-24 Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQKKK 104 MTKGT+SFGKRHNKTHT CRRCG+SSYHIQKK+ Sbjct: 1 MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKKR 33
BLAST of 60S ribosomal protein L37 vs. TrEMBL
Match: A0A0R3TQE8 (Ribosomal protein L37 OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS9762 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.063e-24 Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 Query: 91 FKRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTGKPK 258 ++K ASC YP AK+R +NWS KA RRTTGTGRC HL+SV RRFKNGFR+G+ K Sbjct: 29 IQKKTCASCGYPSAKMRKYNWSAKALRRRTTGTGRCLHLKSVQRRFKNGFRSGQAK 84 HSP 2 Score: 60.8474 bits (146), Expect = 2.063e-24 Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQKK 101 MTKGTTSFGKRHNK+HT CRRCGK SYHIQKK Sbjct: 1 MTKGTTSFGKRHNKSHTQCRRCGKKSYHIQKK 32
BLAST of 60S ribosomal protein L37 vs. TrEMBL
Match: A0A0R3UHJ7 (Ribosomal protein L37 OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS6824 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.634e-24 Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 1 Query: 91 FKRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTGKPKA 261 ++K A+C YP AK+R +NWS KA+ R+TTGTGRC HL+SVHRRFK+GFR+G P++ Sbjct: 29 IQKKTCAACGYPSAKMRKYNWSEKARRRKTTGTGRCLHLKSVHRRFKHGFRSGPPRS 85 HSP 2 Score: 60.4622 bits (145), Expect = 4.634e-24 Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQKK 101 MTKGTTSFGKRHNKTHT CRRCG+ SYHIQKK Sbjct: 1 MTKGTTSFGKRHNKTHTQCRRCGRKSYHIQKK 32
BLAST of 60S ribosomal protein L37 vs. TrEMBL
Match: A0A087W0I6 (Ribosomal protein L37 OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000183700 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.338e-24 Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 1 Query: 91 FKRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTGKPKA 261 ++K A+C YP +IR +NWS KA+ R+TTGTGRC HL++VHRRFK+GFR+G PKA Sbjct: 29 IQKKTCAACGYPSPRIRKYNWSVKARRRKTTGTGRCLHLKAVHRRFKHGFRSGPPKA 85 HSP 2 Score: 60.4622 bits (145), Expect = 6.338e-24 Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQKK 101 MTKGTTSFGKRHNKTHT CRRCG+ SYHIQKK Sbjct: 1 MTKGTTSFGKRHNKTHTQCRRCGRKSYHIQKK 32
BLAST of 60S ribosomal protein L37 vs. TrEMBL
Match: A0A1W0WLN2 (Ribosomal protein L37 OS=Hypsibius dujardini OX=232323 GN=BV898_09755 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.864e-24 Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 1 Query: 109 ASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTGKPKAXDR 270 A+C YP +IR +NWS KA+ RRTTGTGR SHLRSV+RRFKNGFR G P R Sbjct: 35 AACGYPSTRIRSYNWSVKAKRRRTTGTGRISHLRSVYRRFKNGFREGIPNVEKR 88 HSP 2 Score: 60.8474 bits (146), Expect = 7.864e-24 Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 MTKGT+SFG RHNKTHT CRRCGKSSYHIQK Sbjct: 1 MTKGTSSFGMRHNKTHTLCRRCGKSSYHIQK 31
BLAST of 60S ribosomal protein L37 vs. Ensembl Cavefish
Match: rpl37 (ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-040625-39]) HSP 1 Score: 57.3806 bits (137), Expect = 1.332e-18 Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1 Query: 115 CAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTG 249 C YP + R +NWS KA+ R TTGTGR H++ V RRF+NGFR G Sbjct: 37 CGYPSKRKRKYNWSAKAKRRSTTGTGRMRHMKVVFRRFRNGFREG 81 HSP 2 Score: 51.9878 bits (123), Expect = 1.332e-18 Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 TKGT+SFGKR NKTHT CRRCG +YH+QK Sbjct: 1 QTKGTSSFGKRRNKTHTLCRRCGSKAYHLQK 31
BLAST of 60S ribosomal protein L37 vs. Ensembl Cavefish
Match: RPL37 (ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]) HSP 1 Score: 54.299 bits (129), Expect = 2.300e-14 Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 MTKGT+SFGKR NKTHT CRRCG +YH+QK Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQK 31 HSP 2 Score: 40.4318 bits (93), Expect = 2.300e-14 Identity = 17/40 (42.50%), Postives = 24/40 (60.00%), Query Frame = 1 Query: 91 FKRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLR 210 ++ C YP + R +NWS KA+ R TTGTGR H++ Sbjct: 29 LQKSTCGKCGYPSKRKRKYNWSAKAKRRSTTGTGRMRHMK 68
BLAST of 60S ribosomal protein L37 vs. Ensembl Sea Lamprey
Match: rpl37 (ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-040625-39]) HSP 1 Score: 59.3066 bits (142), Expect = 4.942e-21 Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 1 Query: 109 ASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTG 249 A C YP + R +NWS KA+ R TTGTGR HL+ V RRF+NGFR G Sbjct: 35 AKCGYPYKRKRSYNWSVKAKRRNTTGTGRMRHLKVVFRRFRNGFREG 81 HSP 2 Score: 55.8398 bits (133), Expect = 4.942e-21 Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 MTKGT+SFGKR NKTHT CRRCG +YHIQK Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGAKAYHIQK 31
BLAST of 60S ribosomal protein L37 vs. Ensembl Yeast
Match: RPL37B (Ribosomal 60S subunit protein L37B; required for processing of 27SB pre-rRNA and formation of stable 66S assembly intermediates; protein abundance increases in response to DNA replication stress; homologous to mammalian ribosomal protein L37, no bacterial homolog; RPL37B has a paralog, RPL37A, that arose from the whole genome duplication [Source:SGD;Acc:S000002908]) HSP 1 Score: 64.3142 bits (155), Expect = 7.028e-22 Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1 Query: 94 KRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTGKPKAXD 267 ++K +SC YP AK R NW+ KA+ R TTGTGR +L+ V RRFKNGF+TG KA Sbjct: 30 QKKTCSSCGYPSAKTRSHNWAAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGSAKATS 87 HSP 2 Score: 52.7582 bits (125), Expect = 7.028e-22 Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQKK 101 M KGT SFGKRHNK+HT C RCG+ S+H+QKK Sbjct: 1 MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKK 32
BLAST of 60S ribosomal protein L37 vs. Ensembl Yeast
Match: RPL37A (Ribosomal 60S subunit protein L37A; required for processing of 27SB pre-rRNA and formation of stable 66S assembly intermediates; homologous to mammalian ribosomal protein L37, no bacterial homolog; RPL37A has a paralog, RPL37B, that arose from the whole genome duplication [Source:SGD;Acc:S000004175]) HSP 1 Score: 62.7734 bits (151), Expect = 1.900e-21 Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1 Query: 94 KRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTG 249 ++K +SC YP AK R +NW KA+ R TTGTGR +L+ V RRFKNGF+TG Sbjct: 30 QKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTG 81 HSP 2 Score: 52.7582 bits (125), Expect = 1.900e-21 Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQKK 101 M KGT SFGKRHNK+HT C RCG+ S+H+QKK Sbjct: 1 MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKK 32
BLAST of 60S ribosomal protein L37 vs. Ensembl Nematostella
Match: EDO38233 (Ribosomal protein L37 [Source:UniProtKB/TrEMBL;Acc:A7SDI8]) HSP 1 Score: 64.3142 bits (155), Expect = 1.340e-22 Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1 Query: 91 FKRKNXASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTG 249 ++K A C +P A++R FNWS KA+ R TTGTGR HL+ V+RRF+NGF+ G Sbjct: 29 IQKKRCAGCGFPSARLRKFNWSMKAKRRTTTGTGRMRHLKLVYRRFQNGFQEG 81 HSP 2 Score: 56.9954 bits (136), Expect = 1.340e-22 Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQKKK 104 MTKGT+SFGKRHNK+HT C RCG+ +YHIQKK+ Sbjct: 1 MTKGTSSFGKRHNKSHTLCVRCGRKAYHIQKKR 33
BLAST of 60S ribosomal protein L37 vs. Ensembl Medaka
Match: rpl37 (ribosomal protein L37 [Source:NCBI gene;Acc:101170032]) HSP 1 Score: 60.4622 bits (145), Expect = 2.572e-20 Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1 Query: 109 ASCAYPEAKIRHFNWSTKAQGRRTTGTGRCSHLRSVHRRFKNGFRTG 249 C YP+ + R +NWS KA+ R TTGTGR HL+ V+RRF+NGFR G Sbjct: 35 GKCGYPQKRKRKYNWSAKAKRRNTTGTGRLRHLKVVYRRFRNGFREG 81 HSP 2 Score: 54.299 bits (129), Expect = 2.572e-20 Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 3 Query: 6 MTKGTTSFGKRHNKTHTFCRRCGKSSYHIQK 98 MTKGT+SFGKR NKTHT CRRCG +YH+QK Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGAKAYHLQK 31 The following BLAST results are available for this feature:
BLAST of 60S ribosomal protein L37 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 3
BLAST of 60S ribosomal protein L37 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of 60S ribosomal protein L37 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 3
BLAST of 60S ribosomal protein L37 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of 60S ribosomal protein L37 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 3
BLAST of 60S ribosomal protein L37 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of 60S ribosomal protein L37 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of 60S ribosomal protein L37 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of 60S ribosomal protein L37 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of 60S ribosomal protein L37 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of 60S ribosomal protein L37 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 2
BLAST of 60S ribosomal protein L37 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of 60S ribosomal protein L37 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of 60S ribosomal protein L37 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 0
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30033756 ID=SMED30033756|Name=60S ribosomal protein L37|organism=Schmidtea mediterranea sexual|type=transcript|length=315bpback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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