SMED30033712
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30033712 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Alignments
SMED30033712 aligns in the following genomic locations:
Homology
BLAST of SMED30033712 vs. TrEMBL
Match: A0A0X3NME3 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=TR160891 PE=4 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 2.496e-6 Identity = 52/198 (26.26%), Postives = 84/198 (42.42%), Query Frame = 2 Query: 113 LNTNSFLNKIAVQEASLGKFICPKCSTFFTNSKTE-------------YEDHLRENHIDYDQVSCIYCAVSFDFSKISSHIESHFEEN-------LMSTNICNL--CNTAVKMDSQESILDHLLFQHNNA---IICPLCQIEYDDINHLLDHINENLKIVYHCTFEGCQMKTNDNEELNFHKNVSGHISDSCFEEHTF 631 L T + I+ E++ G FIC C T T+ + HL H + +SC++C + S +SH+ HF E L S+ IC + C+ + +S + HLL HN I CP C++ ++ + H+ + HCT EGC +K+ + L H S H S++ +F Sbjct: 11 LATKYLSSNISRLESATGCFICLACPLSATAKSTDGYNHINGTWNPETFSMHLSTCHPGLEILSCVFCGLEIPKSSFTSHVAFHFLEYSSRGRGLLPSSYICPIASCSPVLTTNSLRCLRIHLLTHHNPPKPRIACPHCRLTQSSLDSWISHVKTISIRLSHCTAEGCLVKSPSRDLLIDHVRRS-HCSEATVSFKSF 207
BLAST of SMED30033712 vs. TrEMBL
Match: A0A183SYX3 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS9421 PE=4 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 2.562e-6 Identity = 52/198 (26.26%), Postives = 84/198 (42.42%), Query Frame = 2 Query: 113 LNTNSFLNKIAVQEASLGKFICPKCSTFFTNSKTE-------------YEDHLRENHIDYDQVSCIYCAVSFDFSKISSHIESHFEEN-------LMSTNICNL--CNTAVKMDSQESILDHLLFQHNNA---IICPLCQIEYDDINHLLDHINENLKIVYHCTFEGCQMKTNDNEELNFHKNVSGHISDSCFEEHTF 631 L T + I+ E++ G FIC C T T+ + HL H + +SC++C + S +SH+ HF E L S+ IC + C+ + +S + HLL HN I CP C++ ++ + H+ + HCT EGC +K+ + L H S H S++ +F Sbjct: 11 LATKYLSSNISRLESATGCFICLACPLSATAKSTDGYNHINGTWNPETFSMHLSTCHPGLEILSCVFCGLEIPKSSFTSHVAFHFLEYSSRGRGLLPSSYICPIASCSPVLTTNSLRCLRIHLLTHHNPPKPRIACPHCRLTQSSLDSWISHVKTISIRLSHCTAEGCLVKSPSRDLLIDHVRRS-HCSEATVSFKSF 207
BLAST of SMED30033712 vs. Planmine SMEST
Match: SMESG000081020.1 (SMESG000081020.1) HSP 1 Score: 1864.74 bits (4829), Expect = 0.000e+0 Identity = 1015/1015 (100.00%), Postives = 1015/1015 (100.00%), Query Frame = 2 Query: 101 MIKLLNTNSFLNKIAVQEASLGKFICPKCSTFFTNSKTEYEDHLRENHIDYDQVSCIYCAVSFDFSKISSHIESHFEENLMSTNICNLCNTAVKMDSQESILDHLLFQHNNAIICPLCQIEYDDINHLLDHINENLKIVYHCTFEGCQMKTNDNEELNFHKNVSGHISDSCFEEHTFNCLSIDDENKFSFVEDENILPKLDKENSFISINHDNDEIPDRNVSRINFVWQLHCRKDLFNSLYKNDDLEELSNFQKKLFSIDLYSIGIILESEKKLYCCLECDYAPQYSHWDVKKHILVSHCSMTEKESRTSLRFIEFNKQSSKNLLNRRKSTSRINDNNYPVTRSESASFLLKLKLPSVKRKKSLLNQTPCSKSKFNSILKIRYRKDLFGQFFRDANSSSAVAFKRKISSVEQYSIGVMVTNNKKAFYCLSCNYISYYSHGDVRKHILNFHCSISNKDARRCMRLVQVVDLQNGLVDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYMLKLFVRTDLYDEMFKNCSLEIAETLKHKLIPVNDYSIGVAVNKTKKTFYCQLCDYISNYSNWDVRKHILVWHCGINNTDSYKCTKLVEFKQXXXXXXXXXXXXXXXXXXXXXLLTKEPLAKLTLDNKSVFKEKSIIDCFTKSEMVTPFISGTGKLVKMHYLKSELKKVFPIASDEFLKEIESKMENYKAYSLEVTYIXXXXXXXXXXXXXXSHYNQGDIKKHIMSKHCGISGNIVRDCIKLCKKDSLSQSFDDIKLESEMYASPRKIRNRSLILKISRESCPGSVKTDQHLACKQLPKKRSSYFVSQKVEPIVNSDHDRYNDFSENXXXXDEDQQQMKRLSSSLSIPFAELEKRPKLASINLDEPQKIIIEREIGLRYSENILRKLCTAEKILGQFPLMKEKLKAYCQSKIRVAKKFNSEIFICSHCNWFNWKSMSVVSKHILEMHTGIDQSFILLVEASTKLDSDGQLLSDSELSKLGWNGKPILS 3145 MIKLLNTNSFLNKIAVQEASLGKFICPKCSTFFTNSKTEYEDHLRENHIDYDQVSCIYCAVSFDFSKISSHIESHFEENLMSTNICNLCNTAVKMDSQESILDHLLFQHNNAIICPLCQIEYDDINHLLDHINENLKIVYHCTFEGCQMKTNDNEELNFHKNVSGHISDSCFEEHTFNCLSIDDENKFSFVEDENILPKLDKENSFISINHDNDEIPDRNVSRINFVWQLHCRKDLFNSLYKNDDLEELSNFQKKLFSIDLYSIGIILESEKKLYCCLECDYAPQYSHWDVKKHILVSHCSMTEKESRTSLRFIEFNKQSSKNLLNRRKSTSRINDNNYPVTRSESASFLLKLKLPSVKRKKSLLNQTPCSKSKFNSILKIRYRKDLFGQFFRDANSSSAVAFKRKISSVEQYSIGVMVTNNKKAFYCLSCNYISYYSHGDVRKHILNFHCSISNKDARRCMRLVQVVDLQNGLVDNEETKESELIEDEDEEDEEEDVDEGEEPKEIESNNISNSVEVKKVKSKLSYMLKLFVRTDLYDEMFKNCSLEIAETLKHKLIPVNDYSIGVAVNKTKKTFYCQLCDYISNYSNWDVRKHILVWHCGINNTDSYKCTKLVEFKQEPIESNDEEDVEEESKIIEESLLTKEPLAKLTLDNKSVFKEKSIIDCFTKSEMVTPFISGTGKLVKMHYLKSELKKVFPIASDEFLKEIESKMENYKAYSLEVTYIKGVKYYVCVVCGYKSHYNQGDIKKHIMSKHCGISGNIVRDCIKLCKKDSLSQSFDDIKLESEMYASPRKIRNRSLILKISRESCPGSVKTDQHLACKQLPKKRSSYFVSQKVEPIVNSDHDRYNDFSENVVVVDEDQQQMKRLSSSLSIPFAELEKRPKLASINLDEPQKIIIEREIGLRYSENILRKLCTAEKILGQFPLMKEKLKAYCQSKIRVAKKFNSEIFICSHCNWFNWKSMSVVSKHILEMHTGIDQSFILLVEASTKLDSDGQLLSDSELSKLGWNGKPILS Sbjct: 1 MIKLLNTNSFLNKIAVQEASLGKFICPKCSTFFTNSKTEYEDHLRENHIDYDQVSCIYCAVSFDFSKISSHIESHFEENLMSTNICNLCNTAVKMDSQESILDHLLFQHNNAIICPLCQIEYDDINHLLDHINENLKIVYHCTFEGCQMKTNDNEELNFHKNVSGHISDSCFEEHTFNCLSIDDENKFSFVEDENILPKLDKENSFISINHDNDEIPDRNVSRINFVWQLHCRKDLFNSLYKNDDLEELSNFQKKLFSIDLYSIGIILESEKKLYCCLECDYAPQYSHWDVKKHILVSHCSMTEKESRTSLRFIEFNKQSSKNLLNRRKSTSRINDNNYPVTRSESASFLLKLKLPSVKRKKSLLNQTPCSKSKFNSILKIRYRKDLFGQFFRDANSSSAVAFKRKISSVEQYSIGVMVTNNKKAFYCLSCNYISYYSHGDVRKHILNFHCSISNKDARRCMRLVQVVDLQNGLVDNEETKESELIEDEDEEDEEEDVDEGEEPKEIESNNISNSVEVKKVKSKLSYMLKLFVRTDLYDEMFKNCSLEIAETLKHKLIPVNDYSIGVAVNKTKKTFYCQLCDYISNYSNWDVRKHILVWHCGINNTDSYKCTKLVEFKQEPIESNDEEDVEEESKIIEESLLTKEPLAKLTLDNKSVFKEKSIIDCFTKSEMVTPFISGTGKLVKMHYLKSELKKVFPIASDEFLKEIESKMENYKAYSLEVTYIKGVKYYVCVVCGYKSHYNQGDIKKHIMSKHCGISGNIVRDCIKLCKKDSLSQSFDDIKLESEMYASPRKIRNRSLILKISRESCPGSVKTDQHLACKQLPKKRSSYFVSQKVEPIVNSDHDRYNDFSENVVVVDEDQQQMKRLSSSLSIPFAELEKRPKLASINLDEPQKIIIEREIGLRYSENILRKLCTAEKILGQFPLMKEKLKAYCQSKIRVAKKFNSEIFICSHCNWFNWKSMSVVSKHILEMHTGIDQSFILLVEASTKLDSDGQLLSDSELSKLGWNGKPILS 1015
BLAST of SMED30033712 vs. Planmine SMEST
Match: SMESG000081028.1 (SMESG000081028.1) HSP 1 Score: 216.083 bits (549), Expect = 5.133e-59 Identity = 139/451 (30.82%), Postives = 244/451 (54.10%), Query Frame = 2 Query: 107 KLLNTNSFLNKIAVQEASLGKFICPKCSTFFTNSKTEYEDHLRENHIDYDQVSCIYCAVSFDFSKISSHIESHFEENLMSTNICNLCNTAVKMDSQESILDHLLFQHNNAIICPLCQIEYDDINHLLDHINENLKIVYHCTFEGCQMKTNDNEELNFHKNVSGHISDSCFEEHTFNCLSIDDENKFSFVEDENILPKLDKENSFISINHDNDEIPDRNVSRINFVWQLHCRKDLFNSLYKNDDLEELSNFQKKLFSIDLYSIGIILESEKKLYCCLECDYAPQYSHWDVKKHILVSHCSMTEKESRTSLRFIEFNKQSSKNLLNRRKSTSRINDNNYPVTRSESASFLLKLKLPSVKRKKSLLNQTPCSKSKFNSILKIRYRKDLFGQFFRDANSSSAVAFKRKISSVEQYSIGVMVTNNKKAFYCLSCNYISYYSHGDVRKHILNFHCSI 1459 + L+ N++L++I++ E + GK+ICP C TF T+SK +EDHL NH ++D++ CI C+ D+SK SH E H +++LM NICN CN KMD +ES+L+HLL HNN + CPLC I++++ L+ H+N + ++HC+FE C + + + E+ FHK + H D F+E FNCL DEN+ F D+N L L+ E + + ++ ++ + ++ + +V +L CR LF + N ++ +KKLF+ID Y I + + + Y C C Y + SH ++KKHIL+ HC ++ L+ N + + N N+ V K K+ +++ S + + K + ++ + + + + + F + + + + ++K+ + + IG+ N K+ F+C+ C +I V+ HIL H ++ Sbjct: 4 RCLDKNTYLSRISILEQNTGKYICPTCVTFCTDSKAIFEDHLETNHKEFDKIVCICCSAVLDYSKYCSHFELHCQKDLMFHNICNFCNLYTKMDCRESVLEHLLLCHNNILCCPLCLIQFENELDLIKHVNNSFITIFHCSFENCFVVSTNINEIIFHKKTT-HDYDL-FDEIVFNCLPKIDENRLEF--DQN-LENLNCERNLLFLSGNSGNLSNK---KYLYVRRLKCRIKLFKEII-NSGIDLYETLKKKLFNIDKYDILVCADGLEIFYKCSLCKYLTKKSHSNIKKHILLHHCEISIAHIEMCLKVTYLNNK-------------KFNVNSENVDAE-------KPKVETIEISDSDQSIVENVEQKIDFLVNLEFLEKEYDRSFNEISLNYLIDTRKKMRKINRCPIGI-TENQKRLFFCMKCKFIE-NEISVVKHHILLCHLNV 423 HSP 2 Score: 85.8853 bits (211), Expect = 1.016e-16 Identity = 109/495 (22.02%), Postives = 205/495 (41.41%), Query Frame = 2 Query: 1679 YMLKLFVRTDLYDEMFKNCSLEIAETLKHKLIPVNDYSIGVAVNKTKKTFYCQLCDYISNYSNWDVRKHILVWHCGINNTDSYKCTKLVEFKQXXXXXXXXXXXXXXXXXXXXXLLTKEPLAKLTLDNKSVFKEKSIIDCFTKSEMVTPFISGTGK----LVKMHYLKSELKKVFPIASDEFLKEIESKMENYKAYSLEVTYIXXXXXXXXXXXXXXSHYNQGDIKKHIMSKHCGISGNIVRDCIKLCKKDSLSQSFDDIKLESEMYASPRKIRNRSLILKISRESCPGSVKTDQHLACKQLPKKRSSYFVSQKVEPIVNSDHDRYNDFSENXXXXDEDQQQMKRLSSSLSIPFAELEKRP-KLASINLDEPQKIIIEREIGLRYSENILRKLCTAEKILGQFPLMKEKLKAYCQ-SKIRVAKKFNSEIFICSHCNWFNWKSMSVVSKHILEMHTGIDQSFILLVEASTKLDSDGQLLSDSELSKLGWNGKPILS 3145 Y+ +L R L+ E+ N +++ ETLK KL ++ Y I V + + + C LC Y++ S+ +++KHIL+ HC I+ C K+ K +++++V EK ++ S+ + + LV + +L+ E + F S +L + KM + +T + ++ ++ + +K HI+ H + N++ C + + + +++ K+E+E +++ + KI S ++ +D+ L K +K+S Y + +E Q + S+ F E K P KL +N E +L+ LC + I+ +F +++ + Y S I N + CS+CN FN +S + HI H GI + ++ ++ TK+DS+ +L+SD EL L WNG+ I S Sbjct: 219 YVRRLKCRIKLFKEII-NSGIDLYETLKKKLFNIDKYDILVCADGLEIFYKCSLCKYLTKKSHSNIKKHILLHHCEISIAHIEMCLKVTYLNN----------------------------KKFNVNSENVDAEKPKVETIEISDSDQSIVENVEQKIDFLVNLEFLEKEYDRSFNEISLNYLIDTRKKMRKINRCPIGITENQKRLFFCMKCKFIENEISV--VKHHILLCHLNVERNMIE-----CSLNFIKEFWNNNKVENEA--------DKTAVDKIP--SNKVNINSDKSLL-KDSNRKKSEYVIENTIET------------------------QFSLMDSN---NFREPCKSPVKLIDLNYSEY----------------VLKLLCELDGIMFRFKDIQKYMTRYKMCSIITSTNDHNKSYYQCSNCN-FNSDILSTILNHIWLDHVGISERYLTMLRVCTKMDSNNKLMSDEELVNLKWNGQTIKS 622
BLAST of SMED30033712 vs. Planmine SMEST
Match: SMESG000062598.1 (SMESG000062598.1) HSP 1 Score: 122.479 bits (306), Expect = 4.688e-28 Identity = 109/477 (22.85%), Postives = 201/477 (42.14%), Query Frame = 2 Query: 260 VSCIYCAVSFDFSKISSHIESHFEENLMSTNICNLCNTAVKMDSQESILDHLLFQHNNAIICPLCQIEYDDINHLLDHINENLKIVYHCTFEGCQMKTNDNEELNFHKNVSGHISDSCFEEHTFNC-------LSIDD----ENKFSFVEDENILPKLDKENSFISINHDNDEIPDRNVSRI---------------NFVWQLHCRKDLFNSLYKNDDLEEL---------------------SNFQKKLFSIDLYSIGIILESEKKLYCCLECDYAPQYSHWDVKKHILVSHCSMTEKESRTSLRFIEFNKQSSKNLLNRRKSTSRIND----NNYPVTRSESAS---FLLKLKLPSVKRKKS----------LLNQTPCSKSK--FNSILKIRYRKDLFGQFFRDANSSSAVAFKRKISSVEQYSIGVMVTNNKKAFYCLSCNYISYYSHGDVRKHILNFHCSISNKDARRCMRL 1492 + C C++ S + H H +S + C CN + ++ E IL+H+++ H CPLC+ EY ++ L H+ ++ K+++HC ++ C KT+ EL HK H+ F E + C LS D+ E E ++++ +++ S+ +N P + SR+ F L +L +L N+D++ + +F+ KL + LY + II + + K + C C Y ++SH D+K+H+ +HC ++ K ++ ++ SS LL R IN NN R S S + K+ P K L+N++P + + + + Y + ++ A F K+ + ++ + V N K + C +C Y+S +SH D+++HI HC I N + +++ Sbjct: 17 IMCSICSLDIPTSSMIQHSSVHLSHKGLSADNCLFCNEVISTNNIEDILEHMIYAHEMKSNCPLCKSEYLTMDDLYHHLRKSYKVIHHCCYQDCTFKTDKMRELLKHKKQKRHMKKLTFTESVYGCKYVKVDVLSSDELDFPELPVEIKESKDVINEVELHLELKSV--ENQLNPRNSNSRLKRKSKIFDPSPEPIKRFKSDLRKSINLDFTLNSNEDIKSIVFTYSETVFEKYVAVSNPTITEDFKTKLSKLSLYPMLIISDEKGKNFICNFCKYESRHSHTDIKRHVFRNHCDISNKNIPLMMKIARYD--SSMKLLPDRDLIRFINSDIKMNNLSAHRLISCSDDENVEKISTPQKNFKSKSRISKGDMIKLINESPVTNNTTIYKDLFYFSYSYRVLMKYIAIAKPKPIDNFVEKLEGLSKFPMSVCTRNKVKNYTCENCEYLSVHSHTDIKRHIFRNHCDILNANMSSILKV 489 HSP 2 Score: 96.6709 bits (239), Expect = 5.255e-20 Identity = 124/486 (25.51%), Postives = 202/486 (41.56%), Query Frame = 2 Query: 1745 IAETLKHKLIPVNDYSIGVAVNKTKKTFYCQLCDYISNYSNWDVRKHILVWHCGINNTDSYKCTKLVEFKQXXXXXXXXXXXXXXXXXXXXXLLTK---------EPLAKLTLDNKSVFKEKSIIDCFTKSEMV-----TPFISGTG---KLVKMHYLKSELKKVFPIASDEFLKEIESKMENYKAYSLEVTYIXXXXXXXXXXXXXXSHYNQGDIKKHIMSKHCGISGNIVRDCIKLCKKDSLSQSFDDIKLESEMYASPRKIRNRSLILKISRESCPGSVKTDQHLACKQLPKKRSSYFVSQKVEPIVNSDHDRYNDFSENXXXXDEDQQQMKRLSSSLSIPFAELEKRPKLASINLDEPQKIIIEREIGLRYSENILRKLCTAEKILGQFPLMKEKLKAYCQSKIRVAKKFNSEIFICSHCNWFNWKSMSVVSKHILEMHTGIDQS--FI-LLVEASTKLDSDGQLLSDSELSKLGWNGKPIL 3142 I E K KL ++ Y + + ++ K F C C Y S +S+ D+++H+ HC I+N + K+ + D + + + I+ + L+ E + K++ K+ FK KS I +K +M+ +P + T L Y L K IA + + K+E + + V VK Y C C Y S ++ DIK+HI HC I N S ILK+SR S + +D L I+N++ + ++ D D + M L P + EK + + +NL I R+I +YS NIL+ +C E L F +K K+ + + + NS+I++C +CNW++ S+ V +H L H ++ F+ +VE S K++ D LLSD E+SK GW G+ IL Sbjct: 256 ITEDFKTKLSKLSLYPMLIISDEKGKNFICNFCKYESRHSHTDIKRHVFRNHCDISNKNIPLMMKIARYDSSMKLLPDRDLIRFINSDIKMNNLSAHRLISCSDDENVEKISTPQKN-FKSKSRI---SKGDMIKLINESPVTNNTTIYKDLFYFSYSYRVLMKYIAIAKPKPIDNFVEKLEGLSKFPMSVCTRNKVKNYTCENCEYLSVHSHTDIKRHIFRNHCDILN-----------------------------------ANMSSILKVSRTSSNMQLLSDSELI------------------RIINNEIS-MKKIDADELLTDSDDESM------LDWPAQKTEKSFEKSRLNL-------ISRKI-FKYSINILKAICYKENFLEHFERLKSKMDVFSTCGVETYYRNNSKIYMCLNCNWYSKISVDEVLRHALNYHAHLENETKFVKKIVETSYKMNKDYCLLSDDEISKKGWKGRIIL 669 HSP 3 Score: 64.3142 bits (155), Expect = 5.929e-10 Identity = 58/221 (26.24%), Postives = 95/221 (42.99%), Query Frame = 2 Query: 845 LSNFQKKLFSIDLYSIGIILESEKKLYCCLECDYAPQYSHWDVKKHILVSHCSMTE-------KESRTSLRFIEFNKQSSKNLLNRRKSTSRINDNNYPVTRSESASFLLKLKLPSVKRKKSL------LNQTPCSKSKFNSILKIRYRKDLFGQFFRDANSSSAVAFKRKISSVEQYSIGVMVTNNKKAFYCLSCNYISYYSHGDVRKHILNFHCSISNK 1468 + NF +KL + + + + ++ K Y C C+Y +SH D+K+HI +HC + K SRTS + ++N S +I D + +T S+ S L P+ K +KS L K N + I Y+++ F R K K+ + NN K + CL+CN+ S S +V +H LN+H + N+ Sbjct: 425 IDNFVEKLEGLSKFPMSVCTRNKVKNYTCENCEYLSVHSHTDIKRHIFRNHCDILNANMSSILKVSRTSSNMQLLSDSELIRIINNEISMKKI-DADELLTDSDDESML---DWPAQKTEKSFEKSRLNLISRKIFKYSINILKAICYKENFLEHFER---------LKSKMDVFSTCGVETYYRNNSKIYMCLNCNWYSKISVDEVLRHALNYHAHLENE 632 HSP 4 Score: 55.8398 bits (133), Expect = 2.065e-7 Identity = 47/164 (28.66%), Postives = 77/164 (46.95%), Query Frame = 2 Query: 1013 KESRTSLRFIEFNKQ--SSKNLLNRRKSTSRINDNNYPVTRSESASFLLKLKLPSVKRKKSLLNQTPCSKSKFNSILKIRYRKDLFGQFFRDANSSSAVAFKRKISSVEQYSIGVMVTNNKKAFYCLSCNYISYYSHGDVRKHILNFHCSISNKDARRCMRLVQ 1498 KES+ + +E + + S +N LN R S SR+ + S K L RK L+ T S SI+ Y + +F ++ +N + FK K+S + Y + ++ K F C C Y S +SH D+++H+ HC ISNK+ M++ + Sbjct: 165 KESKDVINEVELHLELKSVENQLNPRNSNSRLKRKSKIFDPSPEPIKRFKSDL----RKSINLDFTLNSNEDIKSIV-FTYSETVFEKYVAVSNPTITEDFKTKLSKLSLYPMLIISDEKGKNFICNFCKYESRHSHTDIKRHVFRNHCDISNKNIPLMMKIAR 323
BLAST of SMED30033712 vs. Planmine SMEST
Match: SMESG000075452.1 (SMESG000075452.1) HSP 1 Score: 83.5741 bits (205), Expect = 6.234e-16 Identity = 111/512 (21.68%), Postives = 201/512 (39.26%), Query Frame = 2 Query: 137 KIAVQEASLGKFICPKC---------STFFTNSKTEYEDHLRENHIDYDQVSCIYCAVSFDFSKISSHIESHFEENLMSTNICNLCNTAVKMDSQESILDHLLFQHNN-AIICPLCQIEYDDINHLLDHINENLKIVYHCTFEGCQMKTNDNEELNFHKNVSGHISDSCFEEHTFNCLSIDDENKFSFVEDENILPKLDK-ENSFISINHDNDE------IP--DRNVSRINFVWQLHCRKDLFNSLYKNDDLEELSNFQKKLFSIDLYSIGIILESEKKLYCCLECDYAPQYSHWDVKKHILVSHCSMTEKESRTSLR----------------FIEFNKQSSKNL-------LNRRKSTSRINDNNYPVTRSESASFLLKLK--------LPSVKRKKSLLNQTPCSK-----------------SKFNSILKIRYRKDLFGQFFRDANSSSAVA-FKRKISSVEQYSIGVMVTNNKKAFYCLSCNYISYYSHGDVRKHILNFHCSISNK 1468 KI++ E F+C C F T++ + + +H R H ++ C+YC + HI++HF ++ +C C + +K++ +I DH+ H + CP C+ ++ D LL H ++ ++HC+FE C +K+++ + H H C + CL I + SF N L L + S + IN + + +P R +S+++ + R+DL + + S F+ +L +D +K + C C Y +S DV+KHIL HCS++ +R LR I F + K N S ++ D++ P S + +K + S+KR K Q+ +K K + ++ + Y + + + ++K+ + I + N K+ F C C S + D+RKHIL H + + Sbjct: 6 KISILEKVNQMFVCSICCDNKSGSNPKPFATSNPSLFLEHHRCCHPSINEFECVYCCSHLPSVNLMQHIQNHFTDSASPRYVCPHCCSRIKININSTI-DHMELDHPDLPFDCPHCRNQFSDRTDLLTHFKKHFLCIFHCSFENCFVKSHNMIGVLAHMK-RMHNGSRCMK---VECL-ITCTERISFKSQCNCLASLQQSPQSPMKINSPSVDDCQMIALPYSTRVLSKLSSGFDERLREDL------TCKMAQYSKFKVRLEIVD----------GQKQFVCSTCQYRSVHSLADVRKHILGCHCSVSTSYTRLCLRASRLDTNTFSLFSDRKLISFANEKLKRAESGTGWDANGDTSAMQLLDDSEPEQESPIDTISRPIKRVAISSGAVGSIKRAKLTQRQSHSAKMRPDSPVPEVGQPLERNEKIDRVIHLNYSWHVLERLVAGQCPERYLPILQQKMDVYALHRILLTRRNGKRYFLCSHCPNCSPHGMNDIRKHILGVHARLPER 495 HSP 2 Score: 57.7658 bits (138), Expect = 5.427e-8 Identity = 32/109 (29.36%), Postives = 57/109 (52.29%), Query Frame = 2 Query: 2792 IEREIGLRYSENILRKLCTAEKILGQFPLMKEKLKAYCQSKIRVAKKFNSEIFICSHCNWFNWKSMSVVSKHILEMHTGIDQSFILLVEASTKLDSDG-QLLSDSELSK 3115 I+R I L YS ++L +L + P++++K+ Y +I + ++ F+CSHC + M+ + KHIL +H + + F ++++ D LLSD EL K Sbjct: 413 IDRVIHLNYSWHVLERLVAGQCPERYLPILQQKMDVYALHRILLTRRNGKRYFLCSHCPNCSPHGMNDIRKHILGVHARLPERFKAAAMYCSRMNRDNYGLLSDDELLK 521 HSP 3 Score: 52.7582 bits (125), Expect = 1.901e-6 Identity = 30/110 (27.27%), Postives = 52/110 (47.27%), Query Frame = 2 Query: 1193 LNQTPCSKSKFNS-------ILKIRYRKDLFGQFFRDANSSSAVAFKRKISSVEQYSIGVMVTNNKKAFYCLSCNYISYYSHGDVRKHILNFHCSISNKDARRCMRLVQV 1501 L Q+P S K NS ++ + Y + + + K++ ++ + + + + +K F C +C Y S +S DVRKHIL HCS+S R C+R ++ Sbjct: 197 LQQSPQSPMKINSPSVDDCQMIALPYSTRVLSKLSSGFDERLREDLTCKMAQYSKFKVRLEIVDGQKQFVCSTCQYRSVHSLADVRKHILGCHCSVSTSYTRLCLRASRL 306
BLAST of SMED30033712 vs. Planmine SMEST
Match: SMESG000016820.1 (SMESG000016820.1) HSP 1 Score: 77.411 bits (189), Expect = 6.547e-14 Identity = 52/179 (29.05%), Postives = 87/179 (48.60%), Query Frame = 2 Query: 110 LLNTNSFLNKIAVQEASLGKFICPKCSTFFTNSKTEYEDHLRENHIDYDQVSCIYCAVSFDFSKISSHIESHFEENLMSTNICNLCNTAVKMDSQESILDHLLFQHNNAIICPLCQIEYDDINHLLDHINENLKIVYHCTFEGCQMKTN--DNEELNFHKNVSGHISDSCFEEHTFNCL 640 +L + +K+ + E SL K++C CS F TN E+ H E H + ++C+YC + ++ SH++ H S C +CN + K+ ESI H H++ CP+C E+ +HI +++ +YHC + C + ++ DN +F N DS EE +CL Sbjct: 1 MLEPIRYYSKVQLLENSL-KYVCTFCSKFSTNRPEEFLKHCAEFHEEIRMINCVYCCQNVIITQYVSHVDQHVSFMGRSKFFCLICNNSFKLTKTESITAHNSIFHDHKNQCPVCLAEFAGTADFCNHIEGSVETLYHCGNKKCLVMSHNKDNFLQHFKNNYQICNKDSITEELVISCL 178 HSP 2 Score: 50.8322 bits (120), Expect = 9.242e-6 Identity = 62/297 (20.88%), Postives = 114/297 (38.38%), Query Frame = 2 Query: 785 QLHCRKDLFNSLYKNDDLEELSNFQKKLFSIDLYSIGIILESEKKLYCCLECDYAPQYSHWDVKKHILVSHCSMTE------------KESRTSLRFIEFNKQSSKNLLNRRKSTSRI-------NDNNYPVTRS---ESASFLLKLKL--------------------PSV---------KRKKSLLNQ-------TPCSKSKFN----SILKIRYRKDLFGQFFRDANSSSAVAFKRKISSVEQYSIGVMVTNNKKAFYCLSCNYISYYSHGDVRKHILNFHCSISNKDARRCMR 1489 QL + +F L +N ++ SN K+ +++ EK L+ C +C Y +S +KHI HC + + + +R I F KQ +KS + + ++ N +++S + + L K+ L P V K S++NQ CS+S+ + S+L++ Y + +F + R + K+ ++ ++ +KK + C C Y + +S +RKHI HC I + CM+ Sbjct: 414 QLKYSERVFRKLLRNLPEKDFSNLNNKMKIFAKFTLTTKWVGEKMLFMCPKCSYKTTHSLDHTRKHIFRIHCKIPKIYLINSMQASSLLSEKKMIRHINFYKQKMG-----KKSGAHVELLSDSEDEENSKISKSIVYGTPAKLRKIDLSNGISGISKNSIADIGTDVEPKVVLKPIDSCTPSKPSIVNQHVETNSLPSCSESELDTSNASVLQLTYSERVFRKLLRKLSEEDFSEIHNKMKIYKECTLSTACVGDKKFYICNQCKYKTNHSPDRIRKHIFRMHCGIPSIYLTACMQ 705 The following BLAST results are available for this feature:
BLAST of SMED30033712 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30033712 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30033712 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30033712 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30033712 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30033712 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30033712 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30033712 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 2
BLAST of SMED30033712 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30033712 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30033712 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30033712 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30033712 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30033712 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30033712 ID=SMED30033712|Name=SMED30033712|organism=Schmidtea mediterranea sexual|type=transcript|length=4130bpback to top protein sequence of SMED30033712-orf-1 >SMED30033712-orf-1 ID=SMED30033712-orf-1|Name=SMED30033712-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1016bp MIKLLNTNSFLNKIAVQEASLGKFICPKCSTFFTNSKTEYEDHLRENHIDback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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