SMED30033694

Overview


Name	SMED30033694
Smed ID	SMED30033694
Length (bp)	2472

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30033694 (SMED30033694) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30033694 (SMED30033694) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30033694 (SMED30033694) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30033694 (SMED30033694) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30033694

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 5

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
nervous system	SMED30033694	SMESG000049916.1	dd_Smed_v4_8376_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30033694	SMESG000049916.1	dd_Smed_v4_8376_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30033694	SMESG000049916.1	Contig39581	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30033694	SMESG000049916.1	Contig39581	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Category 2 cell	SMED30033694	SMESG000049916.1	dd_Smed_v4_8376_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of SMED30033694 vs. Ensembl Human
Match: ELAVL4 (ELAV like RNA binding protein 4 [Source:HGNC Symbol;Acc:HGNC:3315])

HSP 1 Score: 255.373 bits (651), Expect = 3.763e-77
Identity = 123/176 (69.89%), Postives = 140/176 (79.55%), Query Frame = -1

Query: 1051 GSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1578
            G+  ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P   TEPITVK AN P
Sbjct:   38 GATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 213

HSP 2 Score: 106.301 bits (264), Expect = 3.847e-24
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  270 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 345

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BLAST of SMED30033694 vs. Ensembl Human
Match: ELAVL4 (ELAV like RNA binding protein 4 [Source:HGNC Symbol;Acc:HGNC:3315])

HSP 1 Score: 254.988 bits (650), Expect = 4.244e-77
Identity = 123/176 (69.89%), Postives = 140/176 (79.55%), Query Frame = -1

Query: 1051 GSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1578
            G+  ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P   TEPITVK AN P
Sbjct:   37 GATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 212

HSP 2 Score: 95.1301 bits (235), Expect = 1.970e-20
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = -1

Query:  340 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNG 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG
Sbjct:  282 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 345

[Close]

BLAST of SMED30033694 vs. Ensembl Human
Match: ELAVL4 (ELAV like RNA binding protein 4 [Source:HGNC Symbol;Acc:HGNC:3315])

HSP 1 Score: 255.373 bits (651), Expect = 6.237e-77
Identity = 123/176 (69.89%), Postives = 140/176 (79.55%), Query Frame = -1

Query: 1051 GSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1578
            G+  ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P   TEPITVK AN P
Sbjct:   38 GATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 213

HSP 2 Score: 106.301 bits (264), Expect = 4.800e-24
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  283 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 358

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BLAST of SMED30033694 vs. Ensembl Human
Match: ELAVL4 (ELAV like RNA binding protein 4 [Source:HGNC Symbol;Acc:HGNC:3315])

HSP 1 Score: 254.988 bits (650), Expect = 6.553e-77
Identity = 123/176 (69.89%), Postives = 140/176 (79.55%), Query Frame = -1

Query: 1051 GSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1578
            G+  ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P   TEPITVK AN P
Sbjct:   31 GATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 206

HSP 2 Score: 106.301 bits (264), Expect = 4.910e-24
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  276 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351

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BLAST of SMED30033694 vs. Ensembl Human
Match: ELAVL2 (ELAV like RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:3313])

HSP 1 Score: 254.603 bits (649), Expect = 6.697e-77
Identity = 122/171 (71.35%), Postives = 139/171 (81.29%), Query Frame = -1

Query: 1051 ENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1563
            +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  TEPITVK AN P
Sbjct:   36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNP 206

HSP 2 Score: 105.531 bits (262), Expect = 6.921e-24
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = -1

Query:  304 PNNLYCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 543
            P   +C+ VYNL+PD  E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  259 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 338

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BLAST of SMED30033694 vs. Ensembl Celegans
Match: exc-7 (pep chromosome:WBcel235:II:9575971:9581490:1 gene:WBGene00001368.1 transcript:F35H8.5.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:exc-7)

HSP 1 Score: 232.646 bits (592), Expect = 7.752e-68
Identity = 109/173 (63.01%), Postives = 136/173 (78.61%), Query Frame = -1

Query: 1051 VNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1569
            + E++TNLI+NYLPQ M+QEE+R+LF+S+GE+ESCKL+RDK TGQSL YGFVNY   +DA  A+  FNGLRLQNK IKVS ARPS++ IKG+NLY+ G+PKSMT  ELE +F  +G IIT RIL D+VTG SKGV F+R+D++ EA+ AIK LN   P   +E ITVK AN P
Sbjct:   37 IGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQITVKFANNP 209

HSP 2 Score: 81.2629 bits (199), Expect = 7.962e-16
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = -1

Query:  295 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFSQS 531
            YCL VYNLS DT +  LWQ F  FGA+ +V + RD  T +C+G+  ++M NY EA  A+  LNG +L  + LQ+ F  S
Sbjct:  374 YCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD-LTQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQVVFKSS 451

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BLAST of SMED30033694 vs. Ensembl Celegans
Match: pab-1 (Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:Q7K797])

HSP 1 Score: 80.1073 bits (196), Expect = 3.374e-15
Identity = 50/159 (31.45%), Postives = 87/159 (54.72%), Query Frame = -1

Query: 1099 NLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSS-------ETIKG-ANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYT 1551
            N+ +  L + +  + + + FS  G + SCK+  D+  G S  YGFV+++  + A NAI++ NG+ L  K + V   +P +       ET K   N+Y+        +  LE+LF+++G I +C ++  +V G SKG  F+ +    EAETA++ L++ T
Sbjct:  121 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALHDST 276

HSP 2 Score: 63.929 bits (154), Expect = 3.308e-10
Identity = 38/170 (22.35%), Postives = 84/170 (49.41%), Query Frame = -1

Query: 1105 TNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSET--------------------IKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNN 1554
            TN+ V     + ++E +  LF+  G + SC+++     G+S  +GFV + + ++A  A++  +   ++   +K+ + R   ++                     +G NLY+  L +++    L++ F  YG I + +++ D   G SKG  F+ +++  EA +A+ ++N+
Sbjct:  213 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNS 379

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Query: 1099 NLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSS-------ETIKG-ANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYT 1551
            N+ +  L + +  + + + FS  G + SCK+  D+  G S  YGFV+++  + A NAI++ NG+ L  K + V   +P +       ET K   N+Y+        +  LE+LF+++G I +C ++  +V G SKG  F+ +    EAETA++ L++ T
Sbjct:  121 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALHDST 276

HSP 2 Score: 63.929 bits (154), Expect = 3.308e-10
Identity = 38/170 (22.35%), Postives = 84/170 (49.41%), Query Frame = -1

Query: 1105 TNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSET--------------------IKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNN 1554
            TN+ V     + ++E +  LF+  G + SC+++     G+S  +GFV + + ++A  A++  +   ++   +K+ + R   ++                     +G NLY+  L +++    L++ F  YG I + +++ D   G SKG  F+ +++  EA +A+ ++N+
Sbjct:  213 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNS 379

[Close]

Query: 1099 NLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSS-------ETIKG-ANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYT 1551
            N+ +  L + +  + + + FS  G + SCK+  D+  G S  YGFV+++  + A NAI++ NG+ L  K + V   +P +       ET K   N+Y+        +  LE+LF+++G I +C ++  +V G SKG  F+ +    EAETA++ L++ T
Sbjct:  121 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALHDST 276

HSP 2 Score: 63.929 bits (154), Expect = 3.308e-10
Identity = 38/170 (22.35%), Postives = 84/170 (49.41%), Query Frame = -1

Query: 1105 TNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSET--------------------IKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNN 1554
            TN+ V     + ++E +  LF+  G + SC+++     G+S  +GFV + + ++A  A++  +   ++   +K+ + R   ++                     +G NLY+  L +++    L++ F  YG I + +++ D   G SKG  F+ +++  EA +A+ ++N+
Sbjct:  213 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNS 379

[Close]

Query: 1099 NLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSS-------ETIKG-ANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYT 1551
            N+ +  L + +  + + + FS  G + SCK+  D+  G S  YGFV+++  + A NAI++ NG+ L  K + V   +P +       ET K   N+Y+        +  LE+LF+++G I +C ++  +V G SKG  F+ +    EAETA++ L++ T
Sbjct:  121 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALHDST 276

HSP 2 Score: 63.929 bits (154), Expect = 3.308e-10
Identity = 38/170 (22.35%), Postives = 84/170 (49.41%), Query Frame = -1

Query: 1105 TNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSET--------------------IKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNN 1554
            TN+ V     + ++E +  LF+  G + SC+++     G+S  +GFV + + ++A  A++  +   ++   +K+ + R   ++                     +G NLY+  L +++    L++ F  YG I + +++ D   G SKG  F+ +++  EA +A+ ++N+
Sbjct:  213 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNS 379

[Close]

BLAST of SMED30033694 vs. Ensembl Fly
Match: Rbp9 (gene:FBgn0010263 transcript:FBtr0290237)

HSP 1 Score: 254.988 bits (650), Expect = 2.951e-76
Identity = 125/175 (71.43%), Postives = 142/175 (81.14%), Query Frame = -1

Query: 1033 RTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTPFNINNS 1557
            +TNLIVNYLPQ MSQ+E+R+LF S GEVESCKLIRDK TGQSL YGFVNY   +DA  AI   NGLRLQNK IKVS+ARPSSE+IKGANLY+ GLPK+MTQ +LE LFS YG IIT RIL D++TG SKGV FIR+DQR+EA+ AIK+LN  TP N TEPITVK AN P +  NS
Sbjct:  109 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPSSNKNS 283

HSP 2 Score: 118.242 bits (295), Expect = 6.742e-28
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNL+PDT+E  LWQ FGPFGAVQSV + RD Q+ KC+GFG +TM NY EA+LAIQ LNG +L NR LQ++F
Sbjct:  356 WCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQVSF 431

[Close]

BLAST of SMED30033694 vs. Ensembl Fly
Match: Rbp9 (gene:FBgn0010263 transcript:FBtr0077640)

HSP 1 Score: 254.988 bits (650), Expect = 2.951e-76
Identity = 125/175 (71.43%), Postives = 142/175 (81.14%), Query Frame = -1

Query: 1033 RTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTPFNINNS 1557
            +TNLIVNYLPQ MSQ+E+R+LF S GEVESCKLIRDK TGQSL YGFVNY   +DA  AI   NGLRLQNK IKVS+ARPSSE+IKGANLY+ GLPK+MTQ +LE LFS YG IIT RIL D++TG SKGV FIR+DQR+EA+ AIK+LN  TP N TEPITVK AN P +  NS
Sbjct:  109 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPSSNKNS 283

HSP 2 Score: 118.242 bits (295), Expect = 6.742e-28
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNL+PDT+E  LWQ FGPFGAVQSV + RD Q+ KC+GFG +TM NY EA+LAIQ LNG +L NR LQ++F
Sbjct:  356 WCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQVSF 431

[Close]

BLAST of SMED30033694 vs. Ensembl Fly
Match: Rbp9 (gene:FBgn0010263 transcript:FBtr0100468)

HSP 1 Score: 254.988 bits (650), Expect = 2.951e-76
Identity = 125/175 (71.43%), Postives = 142/175 (81.14%), Query Frame = -1

Query: 1033 RTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTPFNINNS 1557
            +TNLIVNYLPQ MSQ+E+R+LF S GEVESCKLIRDK TGQSL YGFVNY   +DA  AI   NGLRLQNK IKVS+ARPSSE+IKGANLY+ GLPK+MTQ +LE LFS YG IIT RIL D++TG SKGV FIR+DQR+EA+ AIK+LN  TP N TEPITVK AN P +  NS
Sbjct:  109 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPSSNKNS 283

HSP 2 Score: 118.242 bits (295), Expect = 6.742e-28
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNL+PDT+E  LWQ FGPFGAVQSV + RD Q+ KC+GFG +TM NY EA+LAIQ LNG +L NR LQ++F
Sbjct:  356 WCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQVSF 431

[Close]

BLAST of SMED30033694 vs. Ensembl Fly
Match: Rbp9 (gene:FBgn0010263 transcript:FBtr0077638)

HSP 1 Score: 254.988 bits (650), Expect = 2.951e-76
Identity = 125/175 (71.43%), Postives = 142/175 (81.14%), Query Frame = -1

Query: 1033 RTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTPFNINNS 1557
            +TNLIVNYLPQ MSQ+E+R+LF S GEVESCKLIRDK TGQSL YGFVNY   +DA  AI   NGLRLQNK IKVS+ARPSSE+IKGANLY+ GLPK+MTQ +LE LFS YG IIT RIL D++TG SKGV FIR+DQR+EA+ AIK+LN  TP N TEPITVK AN P +  NS
Sbjct:  109 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPSSNKNS 283

HSP 2 Score: 118.242 bits (295), Expect = 6.742e-28
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNL+PDT+E  LWQ FGPFGAVQSV + RD Q+ KC+GFG +TM NY EA+LAIQ LNG +L NR LQ++F
Sbjct:  356 WCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQVSF 431

[Close]

BLAST of SMED30033694 vs. Ensembl Fly
Match: Rbp9 (gene:FBgn0010263 transcript:FBtr0330213)

HSP 1 Score: 256.529 bits (654), Expect = 2.781e-74
Identity = 125/175 (71.43%), Postives = 142/175 (81.14%), Query Frame = -1

Query: 1033 RTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTPFNINNS 1557
            +TNLIVNYLPQ MSQ+E+R+LF S GEVESCKLIRDK TGQSL YGFVNY   +DA  AI   NGLRLQNK IKVS+ARPSSE+IKGANLY+ GLPK+MTQ +LE LFS YG IIT RIL D++TG SKGV FIR+DQR+EA+ AIK+LN  TP N TEPITVK AN P +  NS
Sbjct:  109 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPSSNKNS 283

HSP 2 Score: 118.242 bits (295), Expect = 4.852e-27
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNL+PDT+E  LWQ FGPFGAVQSV + RD Q+ KC+GFG +TM NY EA+LAIQ LNG +L NR LQ++F
Sbjct:  356 WCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQVSF 431

[Close]

BLAST of SMED30033694 vs. Ensembl Zebrafish
Match: elavl2 (ELAV like neuron-specific RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040704-9])

HSP 1 Score: 255.758 bits (652), Expect = 2.035e-77
Identity = 124/178 (69.66%), Postives = 143/178 (80.34%), Query Frame = -1

Query: 1051 PNGSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1584
            PNGS   +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY + KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQ+G IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  TEPITVK AN P
Sbjct:   31 PNGS--EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNP 206

HSP 2 Score: 103.219 bits (256), Expect = 3.466e-23
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNL+PD  E  LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  277 WCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQVSF 352

[Close]

BLAST of SMED30033694 vs. Ensembl Zebrafish
Match: elavl2 (ELAV like neuron-specific RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040704-9])

HSP 1 Score: 256.914 bits (655), Expect = 2.282e-77
Identity = 124/178 (69.66%), Postives = 143/178 (80.34%), Query Frame = -1

Query: 1051 PNGSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1584
            PNGS   +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY + KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQ+G IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  TEPITVK AN P
Sbjct:   60 PNGS--EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNP 235

HSP 2 Score: 102.834 bits (255), Expect = 5.864e-23
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNL+PD  E  LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  306 WCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQVSF 381

[Close]

BLAST of SMED30033694 vs. Ensembl Zebrafish
Match: elavl2 (ELAV like neuron-specific RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040704-9])

HSP 1 Score: 256.529 bits (654), Expect = 2.286e-77
Identity = 124/178 (69.66%), Postives = 143/178 (80.34%), Query Frame = -1

Query: 1051 PNGSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1584
            PNGS   +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY + KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQ+G IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  TEPITVK AN P
Sbjct:   60 PNGS--EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNP 235

HSP 2 Score: 102.834 bits (255), Expect = 5.950e-23
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNL+PD  E  LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  305 WCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQVSF 380

[Close]

BLAST of SMED30033694 vs. Ensembl Zebrafish
Match: elavl4 (ELAV like neuron-specific RNA binding protein 4 [Source:NCBI gene;Acc:30737])

HSP 1 Score: 253.062 bits (645), Expect = 5.826e-76
Identity = 121/172 (70.35%), Postives = 137/172 (79.65%), Query Frame = -1

Query: 1051 NENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1566
            ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P    EPITVK AN P
Sbjct:   84 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNP 255

HSP 2 Score: 105.916 bits (263), Expect = 6.322e-24
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  312 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 387

[Close]

BLAST of SMED30033694 vs. Ensembl Zebrafish
Match: elavl4 (ELAV like neuron-specific RNA binding protein 4 [Source:NCBI gene;Acc:30737])

HSP 1 Score: 253.062 bits (645), Expect = 9.196e-76
Identity = 121/172 (70.35%), Postives = 137/172 (79.65%), Query Frame = -1

Query: 1051 NENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1566
            ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P    EPITVK AN P
Sbjct:   84 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNP 255

HSP 2 Score: 105.916 bits (263), Expect = 7.548e-24
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  325 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 400

[Close]

BLAST of SMED30033694 vs. Ensembl Xenopus
Match: psmc3 (proteasome 26S subunit, ATPase 3 [Source:Xenbase;Acc:XB-GENE-1009848])

HSP 1 Score: 255.758 bits (652), Expect = 1.965e-77
Identity = 123/177 (69.49%), Postives = 140/177 (79.10%), Query Frame = -1

Query: 1051 NGSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1581
            NG+  ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P    EPITVK AN P
Sbjct:   24 NGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNP 200

HSP 2 Score: 106.301 bits (264), Expect = 3.366e-24
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  257 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 332

[Close]

BLAST of SMED30033694 vs. Ensembl Xenopus
Match: trerf1 (transcriptional regulating factor 1 [Source:Xenbase;Acc:XB-GENE-940630])

HSP 1 Score: 254.988 bits (650), Expect = 2.746e-77
Identity = 122/171 (71.35%), Postives = 139/171 (81.29%), Query Frame = -1

Query: 1051 ENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1563
            +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  TEPITVK AN P
Sbjct:   24 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNP 194

HSP 2 Score: 105.531 bits (262), Expect = 5.425e-24
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = -1

Query:  295 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFSQS 531
            +C+ VYNL+PD  E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F  S
Sbjct:  252 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 330

[Close]

BLAST of SMED30033694 vs. Ensembl Xenopus
Match: trerf1 (transcriptional regulating factor 1 [Source:Xenbase;Acc:XB-GENE-940630])

HSP 1 Score: 254.988 bits (650), Expect = 8.064e-77
Identity = 122/171 (71.35%), Postives = 139/171 (81.29%), Query Frame = -1

Query: 1051 ENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1563
            +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  TEPITVK AN P
Sbjct:   53 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNP 223

HSP 2 Score: 105.531 bits (262), Expect = 8.559e-24
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = -1

Query:  295 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFSQS 531
            +C+ VYNL+PD  E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F  S
Sbjct:  281 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 359

[Close]

BLAST of SMED30033694 vs. Ensembl Xenopus
Match: trerf1 (transcriptional regulating factor 1 [Source:Xenbase;Acc:XB-GENE-940630])

HSP 1 Score: 254.988 bits (650), Expect = 1.062e-76
Identity = 122/171 (71.35%), Postives = 139/171 (81.29%), Query Frame = -1

Query: 1051 ENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1563
            +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  TEPITVK AN P
Sbjct:   64 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNP 234

HSP 2 Score: 105.145 bits (261), Expect = 1.330e-23
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = -1

Query:  295 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFSQS 531
            +C+ VYNL+PD  E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F  S
Sbjct:  292 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 370

[Close]

BLAST of SMED30033694 vs. Ensembl Xenopus
Match: psmc3 (proteasome 26S subunit, ATPase 3 [Source:Xenbase;Acc:XB-GENE-1009848])

HSP 1 Score: 253.447 bits (646), Expect = 4.188e-76
Identity = 122/176 (69.32%), Postives = 139/176 (78.98%), Query Frame = -1

Query: 1051 GSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1578
            G+  ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P    EPITVK AN P
Sbjct:   51 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNP 226

HSP 2 Score: 106.301 bits (264), Expect = 5.573e-24
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  296 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 371

[Close]

BLAST of SMED30033694 vs. Ensembl Mouse
Match: Elavl4 (ELAV like RNA binding protein 4 [Source:MGI Symbol;Acc:MGI:107427])

HSP 1 Score: 255.373 bits (651), Expect = 3.481e-77
Identity = 123/176 (69.89%), Postives = 140/176 (79.55%), Query Frame = -1

Query: 1051 GSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1578
            G+  ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P   TEPITVK AN P
Sbjct:   41 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 216

HSP 2 Score: 106.301 bits (264), Expect = 3.216e-24
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  273 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 348

[Close]

BLAST of SMED30033694 vs. Ensembl Mouse
Match: Elavl4 (ELAV like RNA binding protein 4 [Source:MGI Symbol;Acc:MGI:107427])

HSP 1 Score: 255.373 bits (651), Expect = 3.665e-77
Identity = 123/176 (69.89%), Postives = 140/176 (79.55%), Query Frame = -1

Query: 1051 GSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1578
            G+  ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P   TEPITVK AN P
Sbjct:   38 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 213

HSP 2 Score: 106.301 bits (264), Expect = 3.295e-24
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  283 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 358

[Close]

BLAST of SMED30033694 vs. Ensembl Mouse
Match: Elavl4 (ELAV like RNA binding protein 4 [Source:MGI Symbol;Acc:MGI:107427])

HSP 1 Score: 255.373 bits (651), Expect = 4.417e-77
Identity = 123/176 (69.89%), Postives = 140/176 (79.55%), Query Frame = -1

Query: 1051 GSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1578
            G+  ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P   TEPITVK AN P
Sbjct:   38 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 213

HSP 2 Score: 106.301 bits (264), Expect = 3.517e-24
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  283 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 358

[Close]

BLAST of SMED30033694 vs. Ensembl Mouse
Match: Elavl4 (ELAV like RNA binding protein 4 [Source:MGI Symbol;Acc:MGI:107427])

HSP 1 Score: 255.373 bits (651), Expect = 4.623e-77
Identity = 123/176 (69.89%), Postives = 140/176 (79.55%), Query Frame = -1

Query: 1051 GSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1578
            G+  ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P   TEPITVK AN P
Sbjct:   43 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 218

HSP 2 Score: 106.301 bits (264), Expect = 4.008e-24
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  288 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 363

[Close]

BLAST of SMED30033694 vs. Ensembl Mouse
Match: Elavl2 (ELAV like RNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1100887])

HSP 1 Score: 254.603 bits (649), Expect = 4.944e-77
Identity = 122/171 (71.35%), Postives = 139/171 (81.29%), Query Frame = -1

Query: 1051 ENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1563
            +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  TEPITVK AN P
Sbjct:   36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNP 206

HSP 2 Score: 105.531 bits (262), Expect = 4.841e-24
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = -1

Query:  304 PNNLYCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 543
            P   +C+ VYNL+PD  E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  259 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 338

[Close]

BLAST of SMED30033694 vs. UniProt/SwissProt
Match: sp|Q28GD4|ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis OX=8364 GN=elavl2 PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 5.628e-76
Identity = 122/171 (71.35%), Postives = 139/171 (81.29%), Query Frame = -1

Query: 1051 ENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1563
            +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  TEPITVK AN P
Sbjct:   64 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNP 234

HSP 2 Score: 105.145 bits (261), Expect = 7.045e-23
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = -1

Query:  295 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFSQS 531
            +C+ VYNL+PD  E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F  S
Sbjct:  292 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 370

[Close]

BLAST of SMED30033694 vs. UniProt/SwissProt
Match: sp|Q5R9Z6|ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii OX=9601 GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 6.437e-76
Identity = 122/171 (71.35%), Postives = 139/171 (81.29%), Query Frame = -1

Query: 1051 ENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1563
            +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  TEPITVK AN P
Sbjct:   36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNP 206

HSP 2 Score: 105.531 bits (262), Expect = 4.442e-23
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = -1

Query:  304 PNNLYCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 543
            P   +C+ VYNL+PD  E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  272 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351

[Close]

BLAST of SMED30033694 vs. UniProt/SwissProt
Match: sp|Q12926|ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens OX=9606 GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 6.437e-76
Identity = 122/171 (71.35%), Postives = 139/171 (81.29%), Query Frame = -1

Query: 1051 ENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1563
            +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  TEPITVK AN P
Sbjct:   36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNP 206

HSP 2 Score: 105.531 bits (262), Expect = 4.442e-23
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = -1

Query:  304 PNNLYCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 543
            P   +C+ VYNL+PD  E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  272 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351

[Close]

BLAST of SMED30033694 vs. UniProt/SwissProt
Match: sp|Q60899|ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus OX=10090 GN=Elavl2 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 6.986e-76
Identity = 122/171 (71.35%), Postives = 139/171 (81.29%), Query Frame = -1

Query: 1051 ENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1563
            +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  TEPITVK AN P
Sbjct:   36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNP 206

HSP 2 Score: 105.531 bits (262), Expect = 4.511e-23
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = -1

Query:  304 PNNLYCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 543
            P   +C+ VYNL+PD  E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  273 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 352

[Close]

BLAST of SMED30033694 vs. UniProt/SwissProt
Match: sp|O09032|ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus OX=10116 GN=Elavl4 PE=1 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 8.210e-76
Identity = 123/176 (69.89%), Postives = 140/176 (79.55%), Query Frame = -1

Query: 1051 GSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1578
            G+  ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P   TEPITVK AN P
Sbjct:   43 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 218

HSP 2 Score: 107.071 bits (266), Expect = 1.713e-23
Identity = 56/111 (50.45%), Postives = 69/111 (62.16%), Query Frame = -1

Query:  304 GP-PPS---PFLSIETIPTTTHLIDPN------NLYCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 606
            GP PPS   P  S  TI   T L+  N        +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  267 GPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 377

[Close]

BLAST of SMED30033694 vs. TrEMBL
Match: A0A0A7M1Y8 (Embryonic lethal abnormal vision 4 (Fragment) OS=Schmidtea polychroa OX=50054 GN=elav4 PE=2 SV=1)

HSP 1 Score: 952.97 bits (2462), Expect = 0.000e+0
Identity = 485/506 (95.85%), Postives = 493/506 (97.43%), Query Frame = -1

Query:  247 LIADLKKNHIEILTDDNYSSDASDSQKTDKDNSISSDEQTNHLESIDDDIQHQTDEEARSPNGSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTPFNINNSCNMQSSVVTNGNVEYLXXXXXXXXXXXXXXXXXXXXXXXXPLRPNGSTCSDMMPRLDVVMSNNGSQPNGVINTEFVQSSSTQMPPSHQLPFPPGQMVCLPQMHSIATFPMSYPGIQHPGLQSISVPPGATTVQTTHLVPSNGGPPPSPFLSIETIPTTTHLIDPNNLYCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFSQSIKMTPVNPFVLPSMAP 1764
            +I D K +HI+ILTDDNYSSDASDSQKTDKDNSISSDEQTNHLESIDDDIQHQTDEEARSPNGSLVNENRTNLIVNYLPQNM+QEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQD KDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTPFNINNSCNMQSS++ NGNVEYLNGS NGSVP NNNNN+NNIRG IPPLRPNGS CSDMMPRLDVVM NNG+QPNGVINTEFVQSSS  MPPSHQLPFPPGQMVCLPQMHSIATFPMSYPGIQHPGLQSISVPPGATTVQTTHLVPSNGGP PSPFLSIETIPTTTHLIDPNNLYCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFSQSIKMTPVNPFVLPSMAP
Sbjct:   36 VITDFKNHHIDILTDDNYSSDASDSQKTDKDNSISSDEQTNHLESIDDDIQHQTDEEARSPNGSLVNENRTNLIVNYLPQNMTQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDAKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTPFNINNSCNMQSSILANGNVEYLNGSTNGSVPSNNNNNNNNIRGIIPPLRPNGSNCSDMMPRLDVVMPNNGNQPNGVINTEFVQSSSATMPPSHQLPFPPGQMVCLPQMHSIATFPMSYPGIQHPGLQSISVPPGATTVQTTHLVPSNGGPSPSPFLSIETIPTTTHLIDPNNLYCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFSQSIKMTPVNPFVLPSMAP 541

[Close]

BLAST of SMED30033694 vs. TrEMBL
Match: U6DYY4 (ELAV-like protein (Fragment) OS=Neovison vison OX=452646 GN=B1APY9 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 8.946e-76
Identity = 123/176 (69.89%), Postives = 140/176 (79.55%), Query Frame = -1

Query: 1051 GSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1578
            G+  ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P   TEPITVK AN P
Sbjct:   12 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 187

[Close]

BLAST of SMED30033694 vs. TrEMBL
Match: A0A5C1XC00 (Elav1 (Fragment) OS=Themiste lageniformis OX=216211 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.137e-75
Identity = 127/177 (71.75%), Postives = 143/177 (80.79%), Query Frame = -1

Query: 1036 NENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTPFNINN 1566
            ++N+TNLIVNYLPQ M+QEE+RNLF+ +GEVESCKLIRDKTTGQSL YGFVNY+D  DA  AI   NGLRLQNK IKVS ARPSSE+IKGANLYI GLPKSMTQL+LE +FS+ G II  RIL D +TG SKGV FIR+DQR EAE AIK LN   P  GTEPITVK AN+P +  N
Sbjct:   29 DDNKTNLIVNYLPQTMTQEEIRNLFTRIGEVESCKLIRDKTTGQSLGYGFVNYKDPADAEKAINNLNGLRLQNKTIKVSFARPSSESIKGANLYISGLPKSMTQLDLETMFSKSGDIINSRILYDPMTGLSKGVGFIRFDQRVEAERAIKDLNGTIPEGGTEPITVKFANSPSSTKN 205

HSP 2 Score: 106.686 bits (265), Expect = 3.906e-21
Identity = 44/76 (57.89%), Postives = 59/76 (77.63%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNL+P+T+E  LWQ FGPFGAVQSV + RD  T KC+GFG +TM NY E+++AI  LNG +L +R LQ++F
Sbjct:  268 WCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDFATQKCKGFGFVTMTNYDESVMAISSLNGFTLGSRVLQVSF 343

[Close]

BLAST of SMED30033694 vs. TrEMBL
Match: A0A1I8GHV1 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.152e-75
Identity = 126/172 (73.26%), Postives = 144/172 (83.72%), Query Frame = -1

Query: 1051 NENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1566
            ++N+TNLIVNYLPQNMSQ+E+++LFSS+G VESCKLIRDKTTGQSL YGFVN+ + KDA  AI   NGLRLQNK IKVS+ARPSSE+IKGANLYICGLPK MTQ EL QLFSQ G IIT RIL DS TG SKGV FIR+DQ++EAE AIKKLN + P    EP+TVK AN+P
Sbjct:   60 SDNQTNLIVNYLPQNMSQDEIKSLFSSIGPVESCKLIRDKTTGQSLGYGFVNFANAKDALKAIGSLNGLRLQNKTIKVSMARPSSESIKGANLYICGLPKGMTQQELVQLFSQCGKIITSRILYDSNTGLSKGVGFIRFDQKFEAELAIKKLNGHVPDGAAEPVTVKFANSP 231

HSP 2 Score: 98.5969 bits (244), Expect = 7.320e-18
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            + L VYNL+P+  E+ LWQ F PFGA+Q+V + RD  + KCRGFG +TM +Y EA LA+  LNG SL  R LQ++F
Sbjct:  339 WSLFVYNLAPEADESLLWQLFSPFGALQAVKVVRDQGSAKCRGFGFVTMNSYEEAALAVTSLNGASLGGRLLQVSF 414

[Close]

BLAST of SMED30033694 vs. TrEMBL
Match: A0A0B7AP66 (Uncharacterized protein (Fragment) OS=Arion vulgaris OX=1028688 GN=ORF128023 PE=4 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 1.939e-75
Identity = 129/188 (68.62%), Postives = 148/188 (78.72%), Query Frame = -1

Query: 1024 SPNGSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTPFNINNSCNM 1587
            SP+ S    ++TNLIVNYLPQ MSQ+E+R+LF+S+GE+ESCKLIRDK TGQSL YGFVNY+  +DA  AI   NGLRLQNK IKVSLARPSSE+IKGANLYI GLPKSMTQL+LE LFSQ G IIT RIL D  TG SKGV FIR+DQR EAE AI+KLNN+ P    +PITVK AN+P +  N   M
Sbjct:   27 SPSHSDDGVSKTNLIVNYLPQTMSQDEIRSLFASIGELESCKLIRDKPTGQSLGYGFVNYKRPEDAEKAINTLNGLRLQNKTIKVSLARPSSESIKGANLYISGLPKSMTQLDLEALFSQIGNIITSRILYDQTTGLSKGVGFIRFDQRGEAERAIQKLNNHIPDGCLDPITVKFANSPSSNKNLAGM 214

[Close]

BLAST of SMED30033694 vs. Ensembl Cavefish
Match: ELAVL2 (ELAV like RNA binding protein 2 [Source:NCBI gene;Acc:103047015])

HSP 1 Score: 255.373 bits (651), Expect = 7.137e-77
Identity = 121/173 (69.94%), Postives = 140/173 (80.92%), Query Frame = -1

Query: 1051 VNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1569
            + +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  +EPITVK AN P
Sbjct:   63 IEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGASEPITVKFANNP 235

HSP 2 Score: 104.375 bits (259), Expect = 1.752e-23
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNL+PD  E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  306 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 381

[Close]

BLAST of SMED30033694 vs. Ensembl Cavefish
Match: ELAVL2 (ELAV like RNA binding protein 2 [Source:NCBI gene;Acc:103047015])

HSP 1 Score: 255.758 bits (652), Expect = 1.128e-76
Identity = 121/173 (69.94%), Postives = 140/173 (80.92%), Query Frame = -1

Query: 1051 VNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1569
            + +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  +EPITVK AN P
Sbjct:   63 IEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGASEPITVKFANNP 235

HSP 2 Score: 104.76 bits (260), Expect = 2.124e-23
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNL+PD  E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  337 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 412

[Close]

BLAST of SMED30033694 vs. Ensembl Cavefish
Match: elavl4 (ELAV like neuron-specific RNA binding protein 4 [Source:NCBI gene;Acc:30737])

HSP 1 Score: 252.677 bits (644), Expect = 4.781e-76
Identity = 121/172 (70.35%), Postives = 137/172 (79.65%), Query Frame = -1

Query: 1051 NENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1566
            ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P    EPITVK AN P
Sbjct:   55 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNP 226

HSP 2 Score: 106.301 bits (264), Expect = 3.315e-24
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  296 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 371

[Close]

BLAST of SMED30033694 vs. Ensembl Cavefish
Match: elavl4 (ELAV like neuron-specific RNA binding protein 4 [Source:NCBI gene;Acc:30737])

HSP 1 Score: 253.062 bits (645), Expect = 4.887e-76
Identity = 121/172 (70.35%), Postives = 137/172 (79.65%), Query Frame = -1

Query: 1051 NENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1566
            ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P    EPITVK AN P
Sbjct:   84 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNP 255

HSP 2 Score: 105.916 bits (263), Expect = 5.212e-24
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  312 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 387

[Close]

BLAST of SMED30033694 vs. Ensembl Cavefish
Match: elavl4 (ELAV like neuron-specific RNA binding protein 4 [Source:NCBI gene;Acc:30737])

HSP 1 Score: 251.906 bits (642), Expect = 8.654e-76
Identity = 121/172 (70.35%), Postives = 137/172 (79.65%), Query Frame = -1

Query: 1051 NENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1566
            ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P    EPITVK AN P
Sbjct:   53 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNP 224

HSP 2 Score: 105.916 bits (263), Expect = 4.624e-24
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  294 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 369

[Close]

BLAST of SMED30033694 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008168.1 (pep scaffold:Pmarinus_7.0:GL476829:41182:80090:-1 gene:ENSPMAG00000007358.1 transcript:ENSPMAT00000008168.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 91.2781 bits (225), Expect = 9.206e-20
Identity = 56/174 (32.18%), Postives = 88/174 (50.57%), Query Frame = -1

Query: 1057 NRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNN--YTPPNG----TEPITVKLAN 1560
            ++TNL +  LP   + +++  L    G++ S K I DKTT Q   YGFV++     A  A+       +Q ++ K     P+       NLYI  LP ++ + ELE +  Q+G +I+ RIL D + G S+GV F R +   + E  I++ N    T P G    +EP+  K A+
Sbjct:   33 SKTNLYIRGLPPGTTDQDLVKLCQPYGKIVSTKAILDKTTNQCKGYGFVDFDGPSAAQKAVTALKASGIQAQMAKQQEQDPT-------NLYISNLPVTIDEQELEGMLKQFGHVISTRILRD-IVGTSRGVGFARMESTEKCEAVIQRFNGKFLTSPPGVPVPSEPLLCKFAD 198

HSP 2 Score: 48.9062 bits (115), Expect = 2.974e-6
Identity = 24/70 (34.29%), Postives = 36/70 (51.43%), Query Frame = -1

Query: 1108 SSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLN 1317
            S E +   NLYI GLP   T  +L +L   YG I++ + ++D  T   KG  F+ +D    A+ A+  L 
Sbjct:   28 SGEQLSKTNLYIRGLPPGTTDQDLVKLCQPYGKIVSTKAILDKTTNQCKGYGFVDFDGPSAAQKAVTALK 97

[Close]

BLAST of SMED30033694 vs. Ensembl Sea Lamprey
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909])

HSP 1 Score: 85.5001 bits (210), Expect = 9.224e-18
Identity = 55/174 (31.61%), Postives = 84/174 (48.28%), Query Frame = -1

Query: 1057 NRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNN---YTPPN---GTEPITVKLAN 1560
            ++TNL +  LP   + +++  L    G++ S K I DK T Q   YGFV++     A  A+       +Q ++ K     P+       NLYI  LP SM + ELE +   +G +I+ RIL D+  G S+GV F R +   + E  I+  N      PP     +EP+  K A+
Sbjct:   56 SKTNLYIRGLPPGTTDQDLTKLCQPYGKIVSTKAILDKNTNQCKGYGFVHFDSPAAAQKAVTALKANGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDA-NGTSRGVGFARMESTEKCEAVIQHFNGKFIQIPPGVPAPSEPLLCKFAD 221

[Close]

BLAST of SMED30033694 vs. Ensembl Sea Lamprey
Match: sf3b4 (splicing factor 3b, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-020419-22])

HSP 1 Score: 77.7962 bits (190), Expect = 2.324e-15
Identity = 50/156 (32.05%), Postives = 83/156 (53.21%), Query Frame = -1

Query: 1105 NENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIK-GANLYICGLPKSMTQLELEQLFSQYGTII-TCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNN 1566
            N++ T + V  L   +S+  +  LF   G V +  + +D+ T Q   YGFV +   +DA  AI+  N ++L  K I+V+ A   ++ +  GAN++I  L   + +  L   FS +G I+ T + + D  TGNSKG AFI +     ++ AI+ +N 
Sbjct:   10 NQDAT-VYVGGLDDKVSEALLWELFLQAGPVVNTHMPKDRITQQHQGYGFVEFLGEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDTEIDEKLLYDTFSAFGVILQTPKTMRDPETGNSKGYAFINFASFEASDAAIEAMNG 164

HSP 2 Score: 49.2914 bits (116), Expect = 2.296e-6
Identity = 23/76 (30.26%), Postives = 42/76 (55.26%), Query Frame = -1

Query:  301 LVVYNLSPDTKEATLWQTFGPFGAV-QSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFS 525
            + + NL  +  E  L+ TF  FG + Q+    RDP+TG  +G+  I   ++  +  AI+ +NG  L NR + ++++
Sbjct:  102 IFIGNLDTEIDEKLLYDTFSAFGVILQTPKTMRDPETGNSKGYAFINFASFEASDAAIEAMNGQYLCNRPISVSYA 177

[Close]

BLAST of SMED30033694 vs. Ensembl Sea Lamprey
Match: pabpc4 (poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663])

HSP 1 Score: 76.2554 bits (186), Expect = 1.327e-14
Identity = 48/183 (26.23%), Postives = 89/183 (48.63%), Query Frame = -1

Query: 1060 TNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSE------------------TIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLA 1554
            TN+ +     +M ++++R  F   G+  S  ++ D+  G+S  +GFV+++  +DA  A+ + NG  L  + + V  A+   E                    +G NLY+  L  ++   +L + F+ YGTI + +++  S  G SKG  F+ +    EA  A+ ++N      G++P+ V LA
Sbjct:  194 TNVYIKNFGDDMDEDKLREFFGKFGKALSVCVMSDEC-GKSRGFGFVSFEQHEDAQRAVNEMNGKELNGRTVFVGRAQKKGERQAELKRKFEMLKQERISRYQGVNLYVKNLDDNIDDEQLRKEFAPYGTITSTKVM--SEEGRSKGFGFVCFSSPEEATKAVTEMNGRI--VGSKPLYVALA 371

HSP 2 Score: 73.9442 bits (180), Expect = 7.512e-14
Identity = 43/168 (25.60%), Postives = 85/168 (50.60%), Query Frame = -1

Query: 1105 SLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSL-----ARPSSETIKGA------NLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNN 1575
            SL      N+ +  L +++  + M + FS+ G + SCK++ D+    S  YGFV+++  + A  AI + NG+ L +++ +        +R   E   GA      N+YI      M + +L + F ++G  ++  ++ D   G S+G  F+ ++Q  +A+ A+ ++N 
Sbjct:   92 SLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVVCDENG--SRGYGFVHFETQEAADRAIEKMNGMLLNDRLARRRFVGRFKSRKEREQEMGARAKEFTNVYIKNFGDDMDEDKLREFFGKFGKALSVCVMSDEC-GKSRGFGFVSFEQHEDAQRAVNEMNG 256

HSP 3 Score: 49.6766 bits (117), Expect = 2.394e-6
Identity = 24/76 (31.58%), Postives = 39/76 (51.32%), Query Frame = -1

Query:  298 LVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFSQ 525
            + + N   D  E  L + FG FG   SV +  D + GK RGFG ++   + +A  A+  +NG  L+ R + +  +Q
Sbjct:  196 VYIKNFGDDMDEDKLREFFGKFGKALSVCVMSD-ECGKSRGFGFVSFEQHEDAQRAVNEMNGKELNGRTVFVGRAQ 270

[Close]

BLAST of SMED30033694 vs. Ensembl Sea Lamprey
Match: tia1l (cytotoxic granule-associated RNA binding protein 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-2167])

HSP 1 Score: 70.4774 bits (171), Expect = 1.135e-13
Identity = 45/176 (25.57%), Postives = 79/176 (44.89%), Query Frame = -1

Query: 1099 NRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGAN----------------------LYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYT 1560
            +  ++ V  L   +S +++R  F+  G++   ++++D  TG+S  YGFV++    DA NAI+Q  G  L  + I+ + A       KG+                       +Y  G+ + +T+  + Q F  +G I+  R+  D      KG +FIR+     A  AI  +N  T
Sbjct:    1 DHYHVFVGDLSPEISTDDLRAAFAPFGKISDARVVKDLATGKSKGYGFVSFFQKLDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKGSQDTDPKHLSFEEVLNQSSPTNCTVYCGGITQGLTEQLMRQTFLLFGQILEIRVFPD------KGYSFIRFATHESAAHAIVSVNGST 170

HSP 2 Score: 47.7506 bits (112), Expect = 4.607e-6
Identity = 23/77 (29.87%), Postives = 39/77 (50.65%), Query Frame = -1

Query:  301 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFS 531
            Y + V +LSP+     L   F PFG +    + +D  TGK +G+G ++     +A  AIQ + G  L  R ++  ++
Sbjct:    3 YHVFVGDLSPEISTDDLRAAFAPFGKISDARVVKDLATGKSKGYGFVSFFQKLDAENAIQQMGGQWLGGRQIRTNWA 79

[Close]

BLAST of SMED30033694 vs. Ensembl Yeast
Match: HRP1 (Subunit of cleavage factor I; cleavage factor I is a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences; required for genome stability [Source:SGD;Acc:S000005483])

HSP 1 Score: 81.2629 bits (199), Expect = 2.165e-16
Identity = 37/134 (27.61%), Postives = 70/134 (52.24%), Query Frame = -1

Query: 1147 LIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYD 1548
            + +  L  + +++ +R  F   G V   K+++D  TG+S  +GF++++        ++  +   L  K+I    A P  E  K   +++ G+   +   E E+ FSQ+GTII  ++++D  TG S+G  F+ YD
Sbjct:  161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQH--ILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYD 292

[Close]

BLAST of SMED30033694 vs. Ensembl Yeast
Match: PAB1 (Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; stimulates, but is not required for the deadenylation activity of the Pan2p-Pan3p poly(A)-ribonuclease complex [Source:SGD;Acc:S000000967])

HSP 1 Score: 80.1073 bits (196), Expect = 4.471e-16
Identity = 54/184 (29.35%), Postives = 91/184 (49.46%), Query Frame = -1

Query: 1108 EQTNHLESIDDDIQHQTDEEARSPNGSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLAR--PSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLN 1653
            EQ  +L   DD  Q  T  E++S     V  +  +L V  L  ++S+  + ++FS +G V S ++ RD  T  SL Y +VN+ D +    AI Q N   ++ ++ ++  ++  PS       N++I  L   +    L   FS +G I++ +I  D   G SKG  F+ +++   A+ AI  LN
Sbjct:   10 EQLENLNIQDDQKQAATGSESQS-----VENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALN 187

HSP 2 Score: 70.0922 bits (170), Expect = 7.710e-13
Identity = 47/167 (28.14%), Postives = 79/167 (47.31%), Query Frame = -1

Query: 1108 TNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETI------------------KGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLN 1554
            TNL V  +    + E+ + LF+  G + S  L +D   G+   +GFVNY+  +DA  A+   N   L  + + V  A+  +E +                  +G NL++  L  S+   +LE+ F+ YGTI + +++  +  G SKG  F+ +    EA  AI + N
Sbjct:  219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEKN 383

HSP 3 Score: 68.1662 bits (165), Expect = 3.020e-12
Identity = 45/165 (27.27%), Postives = 86/165 (52.12%), Query Frame = -1

Query: 1105 SLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVS--LARPSS----ETIKG--ANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNN 1575
            SL  +   N+ +  L  ++  + + + FS  G++ S K+  D+  G+S  +GFV++++   A  AI   NG+ L  + I V+  L+R       E  K    NLY+  +    T  + ++LF+++G I++  +  D+  G  KG  F+ Y++  +A  A++ LN+
Sbjct:  119 SLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEALND 281

[Close]

BLAST of SMED30033694 vs. Ensembl Yeast
Match: MIP6 (Putative RNA-binding protein; interacts with Mex67p, which is a component of the nuclear pore involved in nuclear mRNA export; MIP6 has a paralog, PES4, that arose from the whole genome duplication [Source:SGD;Acc:S000001057])

HSP 1 Score: 69.3218 bits (168), Expect = 1.498e-12
Identity = 42/153 (27.45%), Postives = 72/153 (47.06%), Query Frame = -1

Query: 1105 LIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKV--SLARPSSETIKGANLYICGLPKSMTQLELEQLFS---QYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNN 1548
            L +  L   +++E +R +F      ES K+ RD  T +SL YG++N++D  DA +A ++FN      + +K+  S+         G N++   LP    QL     +    +YG +++C      +    K + F+ +D    A   IKK NN
Sbjct:  113 LFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKEFNYTVFFGQEVKIMPSMKNTLFRKNIGTNVFFSNLPLENPQLTTRSFYLIMIEYGNVLSC------LLERRKNIGFVYFDNDISARNVIKKYNN 259

[Close]

BLAST of SMED30033694 vs. Ensembl Yeast
Match: PUB1 (Poly (A)+ RNA-binding protein; abundant mRNP-component protein that binds mRNA and is required for stability of many mRNAs; component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; implicated in regulation of translation; carries Q/N-rich domain at C- terminus, identified as candidate prion; human homolog Tia1 is critical for normal synaptic plasticity; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000004961])

HSP 1 Score: 65.0846 bits (157), Expect = 2.191e-11
Identity = 36/148 (24.32%), Postives = 80/148 (54.05%), Query Frame = -1

Query: 1111 LIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPS--SETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKL 1548
            L V  L + ++++ ++  F   G + + K++ DK   ++++Y FV Y    DA+ A++  NG +++N I+K++ A  S  S +    NL++  L  ++    L   F  + + ++  ++ D  TG+S+G  F+ +  + +A+ A+  +
Sbjct:   77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 223

[Close]

BLAST of SMED30033694 vs. Ensembl Yeast
Match: HRB1 (Poly(A+) RNA-binding protein; key surveillance factor for the selective export of spliced mRNAs from the nucleus to the cytoplasm; preference for intron-containing genes; similar to Npl3p; HRB1 has a paralog, GBP2, that arose from the whole genome duplication [Source:SGD;Acc:S000004949])

HSP 1 Score: 56.225 bits (134), Expect = 1.172e-8
Identity = 48/190 (25.26%), Postives = 82/190 (43.16%), Query Frame = -1

Query: 1102 GSLVNENRTN-LIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKV-------------------------SLARPSSETIKGAN-----LYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNY 1578
            G L +  +T+ +IV  LP +++ + ++++F   G V    +  D   G S   G V++ D KD   AI ++NG  ++  ++ V                           AR  +E + G       +Y   LP S  + +L  LF   G +    +  DS  G   G+A + YD   +A+  I++LNNY
Sbjct:  252 GELRHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELD-GDGVSTGSGTVSFYDIKDLHRAIEKYNGYSIEGNVLDVKSKESVHNHSDGDDVDIPMDDSPVNEEARKFTENVVGGGERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDS-KGAPTGIAVVEYDNVDDADVCIERLNNY 439

[Close]

BLAST of SMED30033694 vs. Ensembl Nematostella
Match: EDO34879 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SN30])

HSP 1 Score: 200.29 bits (508), Expect = 8.994e-58
Identity = 96/171 (56.14%), Postives = 124/171 (72.51%), Query Frame = -1

Query: 1051 ENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1563
            + RTNLI+NY+P +MSQE+++ +F ++G V SCKLIRD+ TGQSL Y FVNY +  DA+ A+R+ NG RLQNK +KVS ARPSS  IK ANLYI GLPK M + E+E LF  +G IIT ++L D V+G  +G  F+R+D+R EA+TAI  LNN T P     +TVK AN P
Sbjct:    7 DERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFARPSSTEIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKVLKD-VSGEGRGTGFVRFDKRCEAQTAIDDLNNKTLPGTNVKLTVKFANPP 176

HSP 2 Score: 56.225 bits (134), Expect = 2.190e-8
Identity = 26/76 (34.21%), Postives = 41/76 (53.95%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VY L  +     L++ F P+GA+ ++ L  D      +G+G + M NY EA  AI  LNG     + LQ++F
Sbjct:  255 WCIFVYGLPQEATPLFLYKLFSPYGAITNIELKLD------KGYGFVNMSNYEEACHAICCLNGTPQHGKILQVSF 324

[Close]

BLAST of SMED30033694 vs. Ensembl Nematostella
Match: EDO42673 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S105])

HSP 1 Score: 157.147 bits (396), Expect = 1.406e-42
Identity = 67/169 (39.64%), Postives = 107/169 (63.31%), Query Frame = -1

Query: 1057 ENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLAN 1563
            E++T LIVNY+PQ+M+ +  R +F ++  + +CK++R K +G S  +GFV+Y   +DA  AI + NG  + NK++KV+ +RP  +  KGANLY+C +PK + + E  + F  YG I+ CR+L D  TG  KG  F+ YD++ EA+ AI  L+    P  T  + ++ A+
Sbjct:    2 ESKTTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSRPGGDNTKGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSLSGTFFPGSTMGLQIRYAD 170

HSP 2 Score: 51.2174 bits (121), Expect = 8.739e-7
Identity = 27/73 (36.99%), Postives = 38/73 (52.05%), Query Frame = -1

Query:  307 LVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIA 525
            L VYN+  D  +  +   F   G V  V++  D Q  +C+GF  +TM    EA  AIQ LNG    N+ LQ++
Sbjct:  235 LYVYNIGYDANQEGITALFAQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQTLNGFMYTNKPLQVS 307

HSP 3 Score: 49.6766 bits (117), Expect = 2.516e-6
Identity = 24/68 (35.29%), Postives = 36/68 (52.94%), Query Frame = -1

Query: 1363 NENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNG 1566
            N    NL V  +P+ + + E R  F + G + +C+L+RDK+TG     GFV Y    +A  AI   +G
Sbjct:   87 NTKGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSLSG 154

[Close]

BLAST of SMED30033694 vs. Ensembl Nematostella
Match: EDO49588 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RGR7])

HSP 1 Score: 80.8777 bits (198), Expect = 2.236e-17
Identity = 57/173 (32.95%), Postives = 85/173 (49.13%), Query Frame = -1

Query: 1057 NRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGT-----EPITVKLAN 1560
            ++TNL +  L  N + +++  L    G + S K I DK T     YGFV+++    A  A+       L NK I+  +A+   +     NLYI  LP++  +  LE +FS+YG +I+ RIL D  T NSKGV F R +   + E  IK  N    P        + + VK A+
Sbjct:   13 SKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAA-----LVNKGIQAQMAKQQEQD--PTNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDT-NSKGVGFARMESAEKCEQVIKDFNKKMLPGEVSLRCIQELVVKFAD 177

HSP 2 Score: 46.595 bits (109), Expect = 9.855e-6
Identity = 29/100 (29.00%), Postives = 48/100 (48.00%), Query Frame = -1

Query: 1282 TNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFN--------GLR-LQNKIIKVSLARPSSETIKGANLYI 1554
            TNL +  LPQN  +  + N+FS  G+V S +++RDK T  S   GF   +  +     I+ FN         LR +Q  ++K +   P     +G ++ +
Sbjct:   94 TNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDT-NSKGVGFARMESAEKCEQVIKDFNKKMLPGEVSLRCIQELVVKFADGGPKKRQGQGQDMVL 192

[Close]

BLAST of SMED30033694 vs. Ensembl Nematostella
Match: EDO42417 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S1S3])

HSP 1 Score: 79.337 bits (194), Expect = 9.809e-16
Identity = 57/176 (32.39%), Postives = 91/176 (51.70%), Query Frame = -1

Query: 1060 GSLVNENR-TNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIK-GANLYICGLPKSMTQLELEQLFSQYGTII-TCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLA 1578
            G +   N+   + V  L + +S+  +  LF   G V +  + +D+ T     YGFV +   +DA  AI+  N +++  K I+V+ A   ++ +  GANL+I  L   + +  L   FS +G I+ T +I+ DS TGNSKG AFI +     ++ AI+ +N     N   PITV  A
Sbjct:    4 GPIAERNQDATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVMNMIKVYGKPIRVNKASAHNKNLDVGANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCN--RPITVSYA 177

HSP 2 Score: 49.2914 bits (116), Expect = 4.130e-6
Identity = 24/76 (31.58%), Postives = 41/76 (53.95%), Query Frame = -1

Query:  301 LVVYNLSPDTKEATLWQTFGPFGAV-QSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFS 525
            L + NL  +  E  L+ TF  FG + Q+  + RD  TG  +GF  I   ++  +  AI+ +NG  L NR + ++++
Sbjct:  102 LFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177

[Close]

BLAST of SMED30033694 vs. Ensembl Nematostella
Match: EDO44940 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RU25])

HSP 1 Score: 72.7886 bits (177), Expect = 5.256e-14
Identity = 37/117 (31.62%), Postives = 65/117 (55.56%), Query Frame = -1

Query: 1201 NLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRI 1551
            +LIV  LP   ++ EM+  F+  GE++ C++  D  T +S  +GFV ++  +DA N +   +  R+Q ++ +V L RP  E      L++  LP+S T+  L + F+Q+G +    I
Sbjct:  116 DLIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLSTSH--RIQGRLCEVRLPRPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYI 230

[Close]

BLAST of SMED30033694 vs. Ensembl Medaka
Match: ELAVL2 (ELAV like RNA binding protein 2 [Source:NCBI gene;Acc:101165347])

HSP 1 Score: 254.988 bits (650), Expect = 2.733e-77
Identity = 122/173 (70.52%), Postives = 140/173 (80.92%), Query Frame = -1

Query: 1051 VNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1569
            + +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  TEPITVK AN P
Sbjct:   34 IEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNCQKPPGATEPITVKFANNP 206

HSP 2 Score: 104.375 bits (259), Expect = 8.525e-24
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = -1

Query:  304 NGGPPPSPFLSIETIPTTTHLIDPNNL---YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 612
            +G P  SP ++I+ + +   +  P +    +C+ VYNL+PD  E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  237 SGAPRFSP-MAIDGVTSLAGINIPGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQVSF 341

[Close]

BLAST of SMED30033694 vs. Ensembl Medaka
Match: ELAVL2 (ELAV like RNA binding protein 2 [Source:NCBI gene;Acc:101165347])

HSP 1 Score: 256.144 bits (653), Expect = 5.559e-77
Identity = 122/173 (70.52%), Postives = 140/173 (80.92%), Query Frame = -1

Query: 1051 VNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1569
            + +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  TEPITVK AN P
Sbjct:   63 IEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNCQKPPGATEPITVKFANNP 235

HSP 2 Score: 55.0694 bits (131), Expect = 2.197e-7
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = -1

Query:  421 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQ 531
            +C+ VYNL+PD  E+ LWQ FGPFGAV +V  A  P+
Sbjct:  306 WCIFVYNLAPDADESILWQMFGPFGAVTNVKSASTPR 342

[Close]

BLAST of SMED30033694 vs. Ensembl Medaka
Match: ELAVL2 (ELAV like RNA binding protein 2 [Source:NCBI gene;Acc:101165347])

HSP 1 Score: 255.373 bits (651), Expect = 6.735e-77
Identity = 122/173 (70.52%), Postives = 140/173 (80.92%), Query Frame = -1

Query: 1051 VNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1569
            + +++TNLIVNYLPQNM+QEE+++LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   PP  TEPITVK AN P
Sbjct:   63 IEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNCQKPPGATEPITVKFANNP 235

HSP 2 Score: 103.99 bits (258), Expect = 2.613e-23
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNL+PD  E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  306 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQVSF 381

[Close]

BLAST of SMED30033694 vs. Ensembl Medaka
Match: elavl4 (ELAV like RNA binding protein 4 [Source:NCBI gene;Acc:101162996])

HSP 1 Score: 252.677 bits (644), Expect = 1.060e-75
Identity = 121/172 (70.35%), Postives = 137/172 (79.65%), Query Frame = -1

Query: 1051 NENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1566
            ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK TGQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P    EPITVK AN P
Sbjct:   78 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNP 249

HSP 2 Score: 105.531 bits (262), Expect = 7.909e-24
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  319 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 394

[Close]

BLAST of SMED30033694 vs. Ensembl Medaka
Match: elavl4 (ELAV like RNA binding protein 4 [Source:NCBI gene;Acc:101162996])

HSP 1 Score: 246.899 bits (629), Expect = 1.095e-73
Identity = 121/176 (68.75%), Postives = 137/176 (77.84%), Query Frame = -1

Query: 1051 NENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTT----GQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1566
            ++++TNLIVNYLPQNM+QEE R+LF S+GE+ESCKL+RDK T    GQSL YGFVNY D KDA  AI   NGLRLQ K IKVS ARPSS +I+ ANLY+ GLPK+MTQ ELEQLFSQYG IIT RILVD VTG S+GV FIR+D+R EAE AIK LN   P    EPITVK AN P
Sbjct:   73 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITAEVSGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNP 248

HSP 2 Score: 105.916 bits (263), Expect = 6.089e-24
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSPD+ E+ LWQ FGPFGAV +V + RD  T KC+GFG +TM NY EA +AI  LNG  L +R LQ++F
Sbjct:  318 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 393

[Close]

BLAST of SMED30033694 vs. Planmine SMEST
Match: SMESG000049916.1 (SMESG000049916.1)

HSP 1 Score: 1024.62 bits (2648), Expect = 0.000e+0
Identity = 581/585 (99.32%), Postives = 581/585 (99.32%), Query Frame = -1

Query:  247 QKYSSALSTSKGVTDIXXXXXXXXXXXXXN---SDESIDKCTMSNLNVVTSANLIEEXXXXXXXXXXXXXXXXXNKLIDLIADLKKNHIEILTDDNYSSDASDSQKTDKDNSISSDEQTNHLESIDDDIQHQTDEEARSPNGSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTPFNINNSCNMQSSVVTNGNVEYLXXXXXXXXXXXXXXXXXXXXXXXXPLRPNGSTCSDMMPRLDVVMSNNGSQPNGVINTEFVQSSSTQMPPSHQLPFPPGQMVCLPQMHSIATFPMSYPGIQHPGLQSISVPPGATTVQTTHLVPSNGGPPPSPFLSIETIPTTTHLIDPNNLYCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFSQSIKMTPVNPFVLPSMAP 1992
            QKYSSALSTSKGVTDINKNANNNNNNNN N   SDESIDKCTMSNLNVVTSANLIEENDDNNNNTNSNNISNSDNKLIDLIADLKKNHIEILTDDNYSSDASDSQKTDKDNSISSDEQTNHLESIDDDIQHQTDEEARSPNGSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTPFNINNSCNMQSSVVTNGNVEYLNGSNNGSVPPNNNNNSNNIRGNIPPLRPNGSTCSDMMPRLDVVMSNNGSQPNGVINTEFVQSSSTQMPPSHQLPFPPGQMVCLPQMHSIATFPMSYPGIQHPGLQSISVPPGATTVQTTHLVPSNGGPPPSPFLSIETIPTTTHLIDPNNLYCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFSQSIKMTPVNPFVLPSMAP
Sbjct:   54 QKYSSALSTSKGVTDINKNANNNNNNNNNNNGNSDESIDKCTMSNLNVVTSANLIEENDDNNNNTNSNNISNSDNKLIDLIADLKKNHIEILTDDNYSSDASDSQKTDKDNSISSDEQTNHLESIDDDIQHQTDEEARSPNGSLVNENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTPFNINNSCNMQSSVVTNGNVEYLNGSNNGSVPPNNNNNSNNIRGNIPPLRPNGSTCSDMMPRLDVVMSNNGSQPNGVINTEFVQSSSTQMPPSHQLPFPPGQMVCLPQMHSIATFPMSYPGIQHPGLQSISVPPGATTVQTTHLVPSNGGPPPSPFLSIETIPTTTHLIDPNNLYCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFSQSIKMTPVNPFVLPSMAP 638

[Close]

BLAST of SMED30033694 vs. Planmine SMEST
Match: SMESG000073310.1 (SMESG000073310.1)

HSP 1 Score: 280.796 bits (717), Expect = 3.696e-85
Identity = 187/474 (39.45%), Postives = 255/474 (53.80%), Query Frame = -1

Query:  310 DDIQHQTDEEARSPNGSLVNE--------NRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTPFNINN----SCNMQSSVVTNGNVEYLXXXXXXXXXXXXXXXXXXXXXXXXPLRPNGSTCSDMMPRLD----VVMSNNGSQ-PNGVINTEFVQSSSTQMPPSHQLPFPPGQMVCLPQMHSIATFPMSYPGIQHPGLQSISVPPGATTVQTTHLVPSNGGPPPSPFLSIET--------------IPTTTHLIDPNNLY-----CLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQI 1623
            D I+   +E   S NGSL+N         ++TN+IVNYLPQNM Q+E+  +F+ +G +ESCKLIRDK TGQSLSYGF+N+    DA  AI + NGL++ NKIIKVSLARPSSE IKGANLY+  +P++  Q +L  LFS  GTIITCR+L DS  G SKGVAFIR+D+R EAE AI+  N     +G+  + VKLANTPFN+ N    S    S +++NG+                         N   + P+G   S  +P  D    VV  N+ S  P  V  + F++      P  H    P   +  L  + S   F  + P +     +SIS    ++   T +  P +   P  P  ++E+              IP TT      + Y      + V NLSPDT +  +WQ F PFGAVQSV L++D  T  C G+G + M NY+EA++A+Q LNG    +R + +
Sbjct:   63 DQIKEDNNEMPDSGNGSLLNNENNQSNNEDKTNIIVNYLPQNMRQDELLKVFAPIGPIESCKLIRDKVTGQSLSYGFINFSSSHDAKMAIEKLNGLQIDNKIIKVSLARPSSEMIKGANLYVGSVPRNYNQDKLRDLFSSCGTIITCRVLTDSY-GKSKGVAFIRFDKRKEAEKAIEMFNGKIIEDGSVGLVVKLANTPFNLLNPKSKSVPKSSPIMSNGS-------------------------NGKSVVPSGKV-SQNIPIKDISRPVVFCNSQSTIPGMVWRSLFIE------PIRHTFSAPALSLPKLSNLKSEPEFVCTRPILS----ESISNAIDSSNTCTFNNTPFHPSLPILPLSALESFNQSTLTPVVPLTCIPCTTQTTASISDYGFRNWIIFVENLSPDTTDDNIWQLFNPFGAVQSVFLSKDMVTNSCSGYGFVQMINYNEAVIAVQCLNGTLFGDRVMYV 499

HSP 2 Score: 56.225 bits (134), Expect = 6.963e-8
Identity = 23/76 (30.26%), Postives = 45/76 (59.21%), Query Frame = -1

Query:  298 LVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFSQ 525
            ++V  L  + ++  L + F P G ++S  L RD  TG+   +G I   + H+A +AI+ LNG  +DN+ ++++ ++
Sbjct:   96 IIVNYLPQNMRQDELLKVFAPIGPIESCKLIRDKVTGQSLSYGFINFSSSHDAKMAIEKLNGLQIDNKIIKVSLAR 171

[Close]

BLAST of SMED30033694 vs. Planmine SMEST
Match: SMESG000073310.1 (SMESG000073310.1)

HSP 1 Score: 280.796 bits (717), Expect = 5.310e-85
Identity = 187/474 (39.45%), Postives = 255/474 (53.80%), Query Frame = -1

Query:  310 DDIQHQTDEEARSPNGSLVNE--------NRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTPFNINN----SCNMQSSVVTNGNVEYLXXXXXXXXXXXXXXXXXXXXXXXXPLRPNGSTCSDMMPRLD----VVMSNNGSQ-PNGVINTEFVQSSSTQMPPSHQLPFPPGQMVCLPQMHSIATFPMSYPGIQHPGLQSISVPPGATTVQTTHLVPSNGGPPPSPFLSIET--------------IPTTTHLIDPNNLY-----CLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQI 1623
            D I+   +E   S NGSL+N         ++TN+IVNYLPQNM Q+E+  +F+ +G +ESCKLIRDK TGQSLSYGF+N+    DA  AI + NGL++ NKIIKVSLARPSSE IKGANLY+  +P++  Q +L  LFS  GTIITCR+L DS  G SKGVAFIR+D+R EAE AI+  N     +G+  + VKLANTPFN+ N    S    S +++NG+                         N   + P+G   S  +P  D    VV  N+ S  P  V  + F++      P  H    P   +  L  + S   F  + P +     +SIS    ++   T +  P +   P  P  ++E+              IP TT      + Y      + V NLSPDT +  +WQ F PFGAVQSV L++D  T  C G+G + M NY+EA++A+Q LNG    +R + +
Sbjct:   83 DQIKEDNNEMPDSGNGSLLNNENNQSNNEDKTNIIVNYLPQNMRQDELLKVFAPIGPIESCKLIRDKVTGQSLSYGFINFSSSHDAKMAIEKLNGLQIDNKIIKVSLARPSSEMIKGANLYVGSVPRNYNQDKLRDLFSSCGTIITCRVLTDSY-GKSKGVAFIRFDKRKEAEKAIEMFNGKIIEDGSVGLVVKLANTPFNLLNPKSKSVPKSSPIMSNGS-------------------------NGKSVVPSGKV-SQNIPIKDISRPVVFCNSQSTIPGMVWRSLFIE------PIRHTFSAPALSLPKLSNLKSEPEFVCTRPILS----ESISNAIDSSNTCTFNNTPFHPSLPILPLSALESFNQSTLTPVVPLTCIPCTTQTTASISDYGFRNWIIFVENLSPDTTDDNIWQLFNPFGAVQSVFLSKDMVTNSCSGYGFVQMINYNEAVIAVQCLNGTLFGDRVMYV 519

HSP 2 Score: 56.225 bits (134), Expect = 7.046e-8
Identity = 23/76 (30.26%), Postives = 45/76 (59.21%), Query Frame = -1

Query:  298 LVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAFSQ 525
            ++V  L  + ++  L + F P G ++S  L RD  TG+   +G I   + H+A +AI+ LNG  +DN+ ++++ ++
Sbjct:  116 IIVNYLPQNMRQDELLKVFAPIGPIESCKLIRDKVTGQSLSYGFINFSSSHDAKMAIEKLNGLQIDNKIIKVSLAR 191

[Close]

BLAST of SMED30033694 vs. Planmine SMEST
Match: SMESG000081081.1 (SMESG000081081.1)

HSP 1 Score: 265.003 bits (676), Expect = 7.073e-80
Identity = 140/232 (60.34%), Postives = 172/232 (74.14%), Query Frame = -1

Query: 1051 TDDNYSSDASDSQKTDKDNSISSDEQTNHLESID-DDIQHQTDEEARSP----NGSL-VN-ENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1725
            TD   S D  D  K +K++   S+ Q++ +  +D +    + + E+ +P    N SL +N EN+TNLIVNYLP NM+QEE+R LF+S+GEVESCKL+RDKTTG+SL Y FV +    DA  AI+  NGLRLQNK IKVSLARPSSE+IKGANLYICGLPK MTQ+ELE+ FSQ G IIT RIL D+ TG S+GVAFIR+DQR EAE AIKKLN + P N +EPITVK AN+P
Sbjct:   23 TDQRASGDTGDHCKENKNDVNGSENQSSLMGQVDWNGTICERNMESVTPSPTSNDSLNMNCENKTNLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFVRPNDAEKAIKTLNGLRLQNKTIKVSLARPSSESIKGANLYICGLPKKMTQVELEEQFSQCGKIITARILYDNKTGLSRGVAFIRFDQRCEAEMAIKKLNGHMPDNSSEPITVKFANSP 254

HSP 2 Score: 122.094 bits (305), Expect = 3.188e-29
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSP+T+EATLWQ FGPFGAVQ+V + RD  T KC+GFG +TM NY EALL+IQ LNG +L NR LQ++F
Sbjct:  339 WCIFVYNLSPETEEATLWQLFGPFGAVQTVKIVRDSTTNKCKGFGFVTMSNYEEALLSIQSLNGFALGNRVLQVSF 414

[Close]

BLAST of SMED30033694 vs. Planmine SMEST
Match: SMESG000081081.1 (SMESG000081081.1)

HSP 1 Score: 265.003 bits (676), Expect = 9.242e-80
Identity = 140/232 (60.34%), Postives = 172/232 (74.14%), Query Frame = -1

Query: 1051 TDDNYSSDASDSQKTDKDNSISSDEQTNHLESID-DDIQHQTDEEARSP----NGSL-VN-ENRTNLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQDGKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQLELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNYTPPNGTEPITVKLANTP 1725
            TD   S D  D  K +K++   S+ Q++ +  +D +    + + E+ +P    N SL +N EN+TNLIVNYLP NM+QEE+R LF+S+GEVESCKL+RDKTTG+SL Y FV +    DA  AI+  NGLRLQNK IKVSLARPSSE+IKGANLYICGLPK MTQ+ELE+ FSQ G IIT RIL D+ TG S+GVAFIR+DQR EAE AIKKLN + P N +EPITVK AN+P
Sbjct:   33 TDQRASGDTGDHCKENKNDVNGSENQSSLMGQVDWNGTICERNMESVTPSPTSNDSLNMNCENKTNLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFVRPNDAEKAIKTLNGLRLQNKTIKVSLARPSSESIKGANLYICGLPKKMTQVELEEQFSQCGKIITARILYDNKTGLSRGVAFIRFDQRCEAEMAIKKLNGHMPDNSSEPITVKFANSP 264

HSP 2 Score: 122.479 bits (306), Expect = 3.465e-29
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = -1

Query:  304 YCLVVYNLSPDTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQHLNGNSLDNRALQIAF 531
            +C+ VYNLSP+T+EATLWQ FGPFGAVQ+V + RD  T KC+GFG +TM NY EALL+IQ LNG +L NR LQ++F
Sbjct:  349 WCIFVYNLSPETEEATLWQLFGPFGAVQTVKIVRDSTTNKCKGFGFVTMSNYEEALLSIQSLNGFALGNRVLQVSF 424

The following BLAST results are available for this feature:

BLAST of SMED30033694 vs. Ensembl Human
BLAST of SMED30033694 vs. Ensembl Celegans
BLAST of SMED30033694 vs. Ensembl Fly
BLAST of SMED30033694 vs. Ensembl Zebrafish
BLAST of SMED30033694 vs. Ensembl Xenopus
BLAST of SMED30033694 vs. Ensembl Mouse
BLAST of SMED30033694 vs. UniProt/SwissProt
BLAST of SMED30033694 vs. TrEMBL
BLAST of SMED30033694 vs. Ensembl Cavefish
BLAST of SMED30033694 vs. Ensembl Sea Lamprey
BLAST of SMED30033694 vs. Ensembl Yeast
BLAST of SMED30033694 vs. Ensembl Nematostella
BLAST of SMED30033694 vs. Ensembl Medaka
BLAST of SMED30033694 vs. Planmine SMEST

BLAST of SMED30033694 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ELAVL4	3.763e-77	69.89	ELAV like RNA binding protein 4 [Source:HGNC Symbo...	[more]
ELAVL4	4.244e-77	69.89	ELAV like RNA binding protein 4 [Source:HGNC Symbo...	[more]
ELAVL4	6.237e-77	69.89	ELAV like RNA binding protein 4 [Source:HGNC Symbo...	[more]
ELAVL4	6.553e-77	69.89	ELAV like RNA binding protein 4 [Source:HGNC Symbo...	[more]
ELAVL2	6.697e-77	71.35	ELAV like RNA binding protein 2 [Source:HGNC Symbo...	[more]

BLAST of SMED30033694 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
exc-7	7.752e-68	63.01	pep chromosome:WBcel235:II:9575971:9581490:1 gene:...	[more]
pab-1	3.374e-15	31.45	Polyadenylate-binding protein [Source:UniProtKB/T...	[more]
pab-1	3.374e-15	31.45	Polyadenylate-binding protein [Source:UniProtKB/T...	[more]
pab-1	3.374e-15	31.45	Polyadenylate-binding protein [Source:UniProtKB/T...	[more]
pab-1	3.374e-15	31.45	Polyadenylate-binding protein [Source:UniProtKB/T...	[more]

BLAST of SMED30033694 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rbp9	2.951e-76	71.43	gene:FBgn0010263 transcript:FBtr0290237	[more]
Rbp9	2.951e-76	71.43	gene:FBgn0010263 transcript:FBtr0077640	[more]
Rbp9	2.951e-76	71.43	gene:FBgn0010263 transcript:FBtr0100468	[more]
Rbp9	2.951e-76	71.43	gene:FBgn0010263 transcript:FBtr0077638	[more]
Rbp9	2.781e-74	71.43	gene:FBgn0010263 transcript:FBtr0330213	[more]

BLAST of SMED30033694 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
elavl2	2.035e-77	69.66	ELAV like neuron-specific RNA binding protein 2 [S...	[more]
elavl2	2.282e-77	69.66	ELAV like neuron-specific RNA binding protein 2 [S...	[more]
elavl2	2.286e-77	69.66	ELAV like neuron-specific RNA binding protein 2 [S...	[more]
elavl4	5.826e-76	70.35	ELAV like neuron-specific RNA binding protein 4 [S...	[more]
elavl4	9.196e-76	70.35	ELAV like neuron-specific RNA binding protein 4 [S...	[more]

BLAST of SMED30033694 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
psmc3	1.965e-77	69.49	proteasome 26S subunit, ATPase 3 [Source:Xenbase;A...	[more]
trerf1	2.746e-77	71.35	transcriptional regulating factor 1 [Source:Xenbas...	[more]
trerf1	8.064e-77	71.35	transcriptional regulating factor 1 [Source:Xenbas...	[more]
trerf1	1.062e-76	71.35	transcriptional regulating factor 1 [Source:Xenbas...	[more]
psmc3	4.188e-76	69.32	proteasome 26S subunit, ATPase 3 [Source:Xenbase;A...	[more]

BLAST of SMED30033694 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Elavl4	3.481e-77	69.89	ELAV like RNA binding protein 4 [Source:MGI Symbol...	[more]
Elavl4	3.665e-77	69.89	ELAV like RNA binding protein 4 [Source:MGI Symbol...	[more]
Elavl4	4.417e-77	69.89	ELAV like RNA binding protein 4 [Source:MGI Symbol...	[more]
Elavl4	4.623e-77	69.89	ELAV like RNA binding protein 4 [Source:MGI Symbol...	[more]
Elavl2	4.944e-77	71.35	ELAV like RNA binding protein 1 [Source:MGI Symbol...	[more]

BLAST of SMED30033694 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q28GD4\|ELAV2_XENTR	5.628e-76	71.35	ELAV-like protein 2 OS=Xenopus tropicalis OX=8364 ...	[more]
sp\|Q5R9Z6\|ELAV2_PONAB	6.437e-76	71.35	ELAV-like protein 2 OS=Pongo abelii OX=9601 GN=ELA...	[more]
sp\|Q12926\|ELAV2_HUMAN	6.437e-76	71.35	ELAV-like protein 2 OS=Homo sapiens OX=9606 GN=ELA...	[more]
sp\|Q60899\|ELAV2_MOUSE	6.986e-76	71.35	ELAV-like protein 2 OS=Mus musculus OX=10090 GN=El...	[more]
sp\|O09032\|ELAV4_RAT	8.210e-76	69.89	ELAV-like protein 4 OS=Rattus norvegicus OX=10116 ...	[more]

BLAST of SMED30033694 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0A7M1Y8	0.000e+0	95.85	Embryonic lethal abnormal vision 4 (Fragment) OS=S...	[more]
U6DYY4	8.946e-76	69.89	ELAV-like protein (Fragment) OS=Neovison vison OX=...	[more]
A0A5C1XC00	1.137e-75	71.75	Elav1 (Fragment) OS=Themiste lageniformis OX=21621...	[more]
A0A1I8GHV1	1.152e-75	73.26	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A0B7AP66	1.939e-75	68.62	Uncharacterized protein (Fragment) OS=Arion vulgar...	[more]

BLAST of SMED30033694 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ELAVL2	7.137e-77	69.94	ELAV like RNA binding protein 2 [Source:NCBI gene;...	[more]
ELAVL2	1.128e-76	69.94	ELAV like RNA binding protein 2 [Source:NCBI gene;...	[more]
elavl4	4.781e-76	70.35	ELAV like neuron-specific RNA binding protein 4 [S...	[more]
elavl4	4.887e-76	70.35	ELAV like neuron-specific RNA binding protein 4 [S...	[more]
elavl4	8.654e-76	70.35	ELAV like neuron-specific RNA binding protein 4 [S...	[more]

BLAST of SMED30033694 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSPMAT00000008168.1	9.206e-20	32.18	pep scaffold:Pmarinus_7.0:GL476829:41182:80090:-1 ...	[more]
RBMS2	9.224e-18	31.61	RNA binding motif single stranded interacting prot...	[more]
sf3b4	2.324e-15	32.05	splicing factor 3b, subunit 4 [Source:ZFIN;Acc:ZDB...	[more]
pabpc4	1.327e-14	26.23	poly(A) binding protein, cytoplasmic 4 (inducible ...	[more]
tia1l	1.135e-13	25.57	cytotoxic granule-associated RNA binding protein 1...	[more]

BLAST of SMED30033694 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 5


Match Name	E-value	Identity	Description
HRP1	2.165e-16	27.61	Subunit of cleavage factor I; cleavage factor I is...	[more]
PAB1	4.471e-16	29.35	Poly(A) binding protein; part of the 3'-end RNA-pr...	[more]
MIP6	1.498e-12	27.45	Putative RNA-binding protein; interacts with Mex67...	[more]
PUB1	2.191e-11	24.32	Poly (A)+ RNA-binding protein; abundant mRNP-compo...	[more]
HRB1	1.172e-8	25.26	Poly(A+) RNA-binding protein; key surveillance fac...	[more]

BLAST of SMED30033694 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO34879	8.994e-58	56.14	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO42673	1.406e-42	39.64	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO49588	2.236e-17	32.95	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO42417	9.809e-16	32.39	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO44940	5.256e-14	31.62	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SMED30033694 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ELAVL2	2.733e-77	70.52	ELAV like RNA binding protein 2 [Source:NCBI gene;...	[more]
ELAVL2	5.559e-77	70.52	ELAV like RNA binding protein 2 [Source:NCBI gene;...	[more]
ELAVL2	6.735e-77	70.52	ELAV like RNA binding protein 2 [Source:NCBI gene;...	[more]
elavl4	1.060e-75	70.35	ELAV like RNA binding protein 4 [Source:NCBI gene;...	[more]
elavl4	1.095e-73	68.75	ELAV like RNA binding protein 4 [Source:NCBI gene;...	[more]

BLAST of SMED30033694 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000049916.1	0.000e+0	99.32	SMESG000049916.1	[more]
SMESG000073310.1	3.696e-85	39.45	SMESG000073310.1	[more]
SMESG000073310.1	5.310e-85	39.45	SMESG000073310.1	[more]
SMESG000081081.1	7.073e-80	60.34	SMESG000081081.1	[more]
SMESG000081081.1	9.242e-80	60.34	SMESG000081081.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30033694 ID=SMED30033694|Name=SMED30033694|organism=Schmidtea mediterranea sexual|type=transcript|length=2472bp
AATTTTTTTTCGATCGACATAAGAATACAAAGACGATTAATAACATTTCA
CGGTTGCAGTCAATACTAGACGAGACGAGAGTTGATTCGCATCCGAGAAA
TGTTCGCTTGTCGCGCAATCTGGCAAATTGACAGTCACATTTTTATAAAG
AGAAAACACCAGGAGAAATAAGGGCAAAATCTATAAATCGATTTTTGTGA
AGCACTTCACAAACTGCCTAATGTTTGAATCGGGGTTTCACAGTCAAGGC
GCCATGCTTGGAAGAACAAAAGGATTCACAGGAGTCATCTTTATACTCTG
ACTGAATGCGATTTGAAGTGCCCGATTGTCTAAGGAATTCCCATTTAAAT
GCTGGATTGCTAGAAGAGCTTCATGATAATTAGGCATAGTTATTAAACCA
AATCCCCTACATTTACCGGTTTGTGGATCTCGTGCCAAATTCACTGATTG
TACTGCCCCAAAAGGTCCAAAGGTCTGCCATAAAGTTGCCTCTTTGGTGT
CTGGACTTAGATTATACACAACCAAACAGTACAAATTATTAGGATCAATT
AAATGGGTTGTAGTGGGAATGGTCTCAATTGAAAGAAAAGGTGACGGAGG
TGGCCCACCATTTGAAGGAACAAGATGTGTTGTCTGAACAGTTGTTGCTC
CAGGAGGAACTGAAATTGATTGTAGACCCGGGTGTTGGATACCAGGATAG
CTCATTGGGAATGTGGCAATAGAATGCATTTGCGGTAGGCAGACCATCTG
ACCCGGAGGAAATGGTAACTGATGGGAGGGTGGCATCTGTGTTGATGATG
ACTGCACAAATTCTGTATTAATGACTCCATTGGGTTGACTGCCATTATTA
GACATAACAACATCTAATCGTGGCATCATATCTGAACAAGTGGATCCATT
TGGTCTTAAAGGTGGAATATTTCCACGAATGTTGTTGCTATTGTTATTAT
TATTGGGAGGAACAGATCCGTTGTTGCTTCCGTTCAAGTATTCAACGTTT
CCATTCGTCACGACCGAGGATTGCATGTTACAGGAATTGTTGATATTGAA
TGGAGTATTTGCAAGTTTCACTGTGATTGGTTCGGTTCCATTTGGCGGAG
TATAGTTATTAAGCTTTTTGATTGCTGTCTCTGCTTCATATCTTTGATCA
TATCTGATGAATGCGACACCTTTTGAATTACCTGTAACACTGTCAACTAA
GATTCGACATGTGATGATTGTGCCATATTGTGAAAATAATTGTTCTAATT
CGAGTTGGGTCATAGATTTGGGTAACCCACAGATGTAGAGATTAGCTCCT
TTAATGGTTTCAGAACTCGGACGAGCTAGGGATACCTTGATGATTTTGTT
CTGCAAACGAAGGCCATTGAATTGTCTAATAGCGTTGCTAGCGTCCTTTC
CGTCTTGATAGTTCACGAATCCATAGCTGAGACTCTGGCCTGTTGTTTTA
TCTCTGATGAGTTTACAGCTCTCTACTTCACCAAGACTACTGAAAAGATT
TCTCATTTCCTCTTGACTCATATTCTGTGGCAAGTAATTGACGATTAGGT
TCGTTCGGTTTTCGTTGACTAAACTCCCGTTTGGGCTTCTGGCTTCTTCG
TCTGTCTGGTGTTGGATGTCGTCGTCGATGGATTCCAAATGGTTCGTCTG
TTCATCGGATGAAATCGAGTTGTCTTTGTCGGTTTTCTGAGAATCCGACG
CATCAGACGAATAGTTATCATCCGTCAAAATTTCAATGTGATTTTTTTTT
AAATCGGCAATGAGATCAATGAGTTTGTTGTCGGAATTGGAAATATTATT
CGAATTCGTGTTGTTATTGTTGTCATCGTTTTCCTCAATCAAATTCGCCG
ACGTGACAACGTTAAGATTTGACATGGTACATTTGTCGATTGATTCATCA
GAATTGCCATTGTTGTTGTTGTTGTTGTTGTTAGCATTTTTGTTTATATC
TGTAACTCCTTTCGATGTTGAGAGAGCAGATGAATATTTTTGATTTGTTC
GAGATGAGTTTCGATTATTGTTATTATTGTTATTAGTAGTAGTAGTAGTA
TTACCATTCGGACTGCTGTTGACATTATTGTTGACGTTGTTTGAATTGTT
TGCATTGTTATTATTATTGCTGTTGTTGCAAATTAGAACTTTGCTTTTCA
TTTTTGGAACGAATTTTCTTTCAAGTTTTCGATAAGGAAAATGATTATTC
GAATTGTCCGAGTGATTGTATGGAACGATTTGAAAATATTGGAACAGATA
ATTCCGATAATACTTGTCAGTTAATTAGTATATGAAATAATTCGTAGGAT
AGAACGTAAAGCTAAAGGCGACACATGTTAAATCTTCGTCTGATTGGATG
ATTCTATCTGCTAGACAATACAAACATCCTTGGAAACGTTGTCTGTAAGT
CGATGTCTGGATAATTTGAGATTCGATTGAATTTCTGCTCCGAAACGAGA
CAACAATCTCAAACAGAAAAAT

protein sequence of SMED30033694-orf-1

>SMED30033694-orf-1 ID=SMED30033694-orf-1|Name=SMED30033694-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=636bp
MKSKVLICNNSNNNNNANNSNNVNNNVNSSPNGNTTTTTNNNNNNNRNSS
RTNQKYSSALSTSKGVTDINKNANNNNNNNNGNSDESIDKCTMSNLNVVT
SANLIEENDDNNNNTNSNNISNSDNKLIDLIADLKKNHIEILTDDNYSSD
ASDSQKTDKDNSISSDEQTNHLESIDDDIQHQTDEEARSPNGSLVNENRT
NLIVNYLPQNMSQEEMRNLFSSLGEVESCKLIRDKTTGQSLSYGFVNYQD
GKDASNAIRQFNGLRLQNKIIKVSLARPSSETIKGANLYICGLPKSMTQL
ELEQLFSQYGTIITCRILVDSVTGNSKGVAFIRYDQRYEAETAIKKLNNY
TPPNGTEPITVKLANTPFNINNSCNMQSSVVTNGNVEYLNGSNNGSVPPN
NNNNSNNIRGNIPPLRPNGSTCSDMMPRLDVVMSNNGSQPNGVINTEFVQ
SSSTQMPPSHQLPFPPGQMVCLPQMHSIATFPMSYPGIQHPGLQSISVPP
GATTVQTTHLVPSNGGPPPSPFLSIETIPTTTHLIDPNNLYCLVVYNLSP
DTKEATLWQTFGPFGAVQSVNLARDPQTGKCRGFGLITMPNYHEALLAIQ
HLNGNSLDNRALQIAFSQSIKMTPVNPFVLPSMAP*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000028	Category 2 cell
PLANA:0000099	neuron

Vocabulary: **INTERPRO**
Term	Definition
IPR006548	ELAD_HU_SF
IPR034775	ELAV/Hu_RRM1
IPR035979	RBD_domain_sf
IPR002343	Hud_Sxl_RNA
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR009057	Homeobox-like_sf

Vocabulary: **cellular component**
Term	Definition
GO:1990904	ribonucleoprotein complex

Vocabulary: **molecular function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding
GO:0003677	DNA binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002343	Paraneoplastic encephalomyelitis antigen	PRINTS	PR00961	HUDSXLRNA	coord: 294..309 score: 62.29 coord: 350..367 score: 57.41 coord: 203..218 score: 86.25 coord: 309..321 score: 69.74 coord: 260..275 score: 62.92 coord: 276..293 score: 68.33
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 204..277 e-value: 8.5E-21 score: 85.1 coord: 290..365 e-value: 1.2E-19 score: 81.3 coord: 545..618 e-value: 4.1E-20 score: 82.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 291..355 e-value: 3.5E-18 score: 65.2 coord: 205..275 e-value: 4.8E-17 score: 61.5 coord: 546..615 e-value: 1.4E-16 score: 60.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 544..622 score: 15.92
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 289..369 score: 16.688
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 203..281 score: 18.001
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 289..371 e-value: 2.2E-23 score: 84.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 135..287 e-value: 7.2E-28 score: 99.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 509..627 e-value: 7.5E-21 score: 76.4
IPR006548	Splicing factor ELAV/Hu	TIGRFAM	TIGR01661	TIGR01661	coord: 200..622 e-value: 2.0E-124 score: 413.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..172
None	No IPR available	PANTHER	PTHR10352	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	coord: 185..622
None	No IPR available	PANTHER	PTHR10352:SF25	FOUND IN NEURONS, ISOFORM A-RELATED	coord: 185..622
None	No IPR available	CDD	cd12652	RRM2_Hu	coord: 289..367 e-value: 1.67167E-44 score: 151.299
IPR034775	Splicing factor ELAV/Hu, RNA recognition motif 1	CDD	cd12650	RRM1_Hu	coord: 202..279 e-value: 8.43919E-46 score: 154.504
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 532..625
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 201..354