SMED30033663
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30033663 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 12
Alignments
SMED30033663 aligns in the following genomic locations:
Homology
BLAST of SMED30033663 vs. Planmine SMEST
Match: SMESG000054684.1 (SMESG000054684.1) HSP 1 Score: 1860.5 bits (4818), Expect = 0.000e+0 Identity = 1071/1082 (98.98%), Postives = 1076/1082 (99.45%), Query Frame = 2 Query: 719 KNNKRQCLVIDQTAHATAMSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKIXXXXXXXXXXXXXXXXXXXEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEMNLXXXXXXXXXXXXXXXXEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNSKQESNVHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVXXXXXXXXXXXXXXLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYXXXXXXXXXXXXXXXXXXIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGYESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGAQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGIHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISNELENDAIKKQXXXXXXXXXXXXSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 3964 +NNKRQCLVIDQTAHATAMSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTE+NLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININN KQESN+HLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLH I VLNENENSKTDIHDLDEYS IDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEG ESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHG QTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLG+HENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISN+LENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG Sbjct: 7 RNNKRQCLVIDQTAHATAMSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEINLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNIKQESNMHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLHLIAVLNENENSKTDIHDLDEYSKIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGNESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGTQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGMHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISNKLENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 1088
BLAST of SMED30033663 vs. Planmine SMEST
Match: SMESG000054684.1 (SMESG000054684.1) HSP 1 Score: 1822.37 bits (4719), Expect = 0.000e+0 Identity = 1054/1064 (99.06%), Postives = 1058/1064 (99.44%), Query Frame = 2 Query: 773 MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKIXXXXXXXXXXXXXXXXXXXEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEMNLXXXXXXXXXXXXXXXXEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNSKQESNVHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVXXXXXXXXXXXXXXLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYXXXXXXXXXXXXXXXXXXIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGYESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGAQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGIHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISNELENDAIKKQXXXXXXXXXXXXSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 3964 MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTE+NLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININN KQESN+HLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLH I VLNENENSKTDIHDLDEYS IDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEG ESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHG QTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLG+HENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISN+LENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG Sbjct: 1 MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEINLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNIKQESNMHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLHLIAVLNENENSKTDIHDLDEYSKIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGNESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGTQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGMHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISNKLENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 1064
BLAST of SMED30033663 vs. Planmine SMEST
Match: SMESG000054684.1 (SMESG000054684.1) HSP 1 Score: 1815.43 bits (4701), Expect = 0.000e+0 Identity = 1053/1066 (98.78%), Postives = 1058/1066 (99.25%), Query Frame = 2 Query: 773 MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKIXXXXXXXXXXXXXXXXXXXEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEMNLXXXXXXXXXXXXXXXXEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNSKQESNVHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVXXXXXXXXXXXXXXLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYXXXXXXXXXXXXXXXXXXIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGYESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGAQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGIHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISNELENDAIKKQXXXXXXXXXXXXSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERM--KTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 3964 MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTE+NLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININN KQESN+HLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLH I VLNENENSKTDIHDLDEYS IDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEG ESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHG QTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLG+HENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISN+LENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRER+ KTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG Sbjct: 1 MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEINLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNIKQESNMHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLHLIAVLNENENSKTDIHDLDEYSKIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGNESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGTQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGMHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISNKLENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERILVKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 1066
BLAST of SMED30033663 vs. Planmine SMEST
Match: SMESG000054674.1 (SMESG000054674.1) HSP 1 Score: 1237.63 bits (3201), Expect = 0.000e+0 Identity = 715/727 (98.35%), Postives = 720/727 (99.04%), Query Frame = 2 Query: 1784 LTSETNISDNVXXXXXXXXXXXXXXLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYXXXXXXXXXXXXXXXXXXIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGYESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGAQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGIHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISNELENDAIKKQXXXXXXXXXXXXSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 3964 +++ETN S NVSDKSYTSKKKTNSSLH I VLNENENSKTDIHDLDEYS IDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEG ESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHG QTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLG+HENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISNELENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPL+NETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG Sbjct: 437 ISNETNKSSNVSDKSYTSKKKTNSSLHLIAVLNENENSKTDIHDLDEYSKIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGNESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGTQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGMHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISNELENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLDNETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 1163 HSP 2 Score: 733.406 bits (1892), Expect = 0.000e+0 Identity = 424/430 (98.60%), Postives = 429/430 (99.77%), Query Frame = 2 Query: 719 KNNKRQCLVIDQTAHATAMSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKIXXXXXXXXXXXXXXXXXXXEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEMNLXXXXXXXXXXXXXXXXEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNSKQESNVHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVXXXXXXXXXXXXXXLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKLFPNPNIKEKELENKNQ 2008 +NNKRQCLVIDQTAHATAMSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTE+NLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININN KQESN+HLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLHPIGVLNENENSKTDIHDLDEYSTIDLENEKK+FPNPNIKEKELEN+NQ Sbjct: 7 RNNKRQCLVIDQTAHATAMSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEINLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNIKQESNMHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKIFPNPNIKEKELENQNQ 436
BLAST of SMED30033663 vs. Planmine SMEST
Match: SMESG000054674.1 (SMESG000054674.1) HSP 1 Score: 1236.86 bits (3199), Expect = 0.000e+0 Identity = 715/727 (98.35%), Postives = 720/727 (99.04%), Query Frame = 2 Query: 1784 LTSETNISDNVXXXXXXXXXXXXXXLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYXXXXXXXXXXXXXXXXXXIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGYESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGAQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGIHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISNELENDAIKKQXXXXXXXXXXXXSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 3964 +++ETN S NVSDKSYTSKKKTNSSLH I VLNENENSKTDIHDLDEYS IDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEG ESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHG QTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLG+HENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISNELENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPL+NETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG Sbjct: 413 ISNETNKSSNVSDKSYTSKKKTNSSLHLIAVLNENENSKTDIHDLDEYSKIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGNESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGTQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGMHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISNELENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLDNETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 1139 HSP 2 Score: 695.271 bits (1793), Expect = 0.000e+0 Identity = 407/412 (98.79%), Postives = 411/412 (99.76%), Query Frame = 2 Query: 773 MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKIXXXXXXXXXXXXXXXXXXXEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEMNLXXXXXXXXXXXXXXXXEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNSKQESNVHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVXXXXXXXXXXXXXXLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKLFPNPNIKEKELENKNQ 2008 MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTE+NLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININN KQESN+HLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLHPIGVLNENENSKTDIHDLDEYSTIDLENEKK+FPNPNIKEKELEN+NQ Sbjct: 1 MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEINLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNIKQESNMHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKIFPNPNIKEKELENQNQ 412 The following BLAST results are available for this feature:
BLAST of SMED30033663 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30033663 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30033663 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30033663 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30033663 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30033663 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30033663 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30033663 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 0
BLAST of SMED30033663 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30033663 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30033663 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30033663 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30033663 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30033663 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30033663 ID=SMED30033663|Name=SMED30033663|organism=Schmidtea mediterranea sexual|type=transcript|length=4118bpback to top protein sequence of SMED30033663-orf-1 >SMED30033663-orf-1 ID=SMED30033663-orf-1|Name=SMED30033663-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1158bp MFPLKENAPIKKSITPTNDNLPRKINTVSKKKTMKNILYKNVLTKEAFKIback to top protein sequence of SMED30033663-orf-2 >SMED30033663-orf-2 ID=SMED30033663-orf-2|Name=SMED30033663-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=110bp MKKTNLSSFEKSPDTSNFDWSNSVSDISNFDISFNATKAVNSSIVDPKLIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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