SMED30033663

Overview
NameSMED30033663
Smed IDSMED30033663
Length (bp)4118
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30033663 (SMED30033663) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30033663 (SMED30033663) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30033663 (SMED30033663) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30033663 (SMED30033663) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30033663

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 12

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30033663SMESG000054684.1 SMESG000054674.1 SmedASXL_016626SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30033663SMESG000054684.1 SMESG000054674.1 SmedASXL_016626SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
cephalic gangliaSMED30033663SMESG000054684.1 SMESG000054674.1 dd_Smed_v4_13582_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30033663SMESG000054684.1 SMESG000054674.1 dd_Smed_v4_13582_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior muscle cellSMED30033663SMESG000054684.1 SMESG000054674.1 dd_Smed_v4_13582_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior sideSMED30033663SMESG000054684.1 SMESG000054674.1 dd_Smed_v4_13582_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30033663SMESG000054684.1 SMESG000054674.1 dd_Smed_v4_18196_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30033663SMESG000054684.1 SMESG000054674.1 dd_Smed_v4_18196_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30033663SMESG000054684.1 SMESG000054674.1 dd_Smed_v6_13582_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
head regionSMED30033663SMESG000054684.1 SMESG000054674.1 SMESG000033574.1 OX_Smed_1.0.22113ox_Smed_v2PMID:24238224
Kao et al., 2013
whole organism asexual adult RNA-sequencing evidence
zeta neoblastSMED30033663SMESG000054684.1 SMESG000054674.1 dd_Smed_v4_13582_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30033663SMESG000054684.1 SMESG000054674.1 dd_Smed_v4_18196_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30033663 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.011069:2703..22862 -11857
Homology
BLAST of SMED30033663 vs. Planmine SMEST
Match: SMESG000054684.1 (SMESG000054684.1)

HSP 1 Score: 1860.5 bits (4818), Expect = 0.000e+0
Identity = 1071/1082 (98.98%), Postives = 1076/1082 (99.45%), Query Frame = 2
Query:  719 KNNKRQCLVIDQTAHATAMSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKIXXXXXXXXXXXXXXXXXXXEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEMNLXXXXXXXXXXXXXXXXEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNSKQESNVHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVXXXXXXXXXXXXXXLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYXXXXXXXXXXXXXXXXXXIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGYESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGAQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGIHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISNELENDAIKKQXXXXXXXXXXXXSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 3964
            +NNKRQCLVIDQTAHATAMSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTE+NLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININN KQESN+HLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLH I VLNENENSKTDIHDLDEYS IDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEG ESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHG QTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLG+HENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISN+LENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG
Sbjct:    7 RNNKRQCLVIDQTAHATAMSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEINLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNIKQESNMHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLHLIAVLNENENSKTDIHDLDEYSKIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGNESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGTQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGMHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISNKLENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 1088          
BLAST of SMED30033663 vs. Planmine SMEST
Match: SMESG000054684.1 (SMESG000054684.1)

HSP 1 Score: 1822.37 bits (4719), Expect = 0.000e+0
Identity = 1054/1064 (99.06%), Postives = 1058/1064 (99.44%), Query Frame = 2
Query:  773 MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKIXXXXXXXXXXXXXXXXXXXEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEMNLXXXXXXXXXXXXXXXXEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNSKQESNVHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVXXXXXXXXXXXXXXLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYXXXXXXXXXXXXXXXXXXIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGYESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGAQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGIHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISNELENDAIKKQXXXXXXXXXXXXSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 3964
            MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTE+NLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININN KQESN+HLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLH I VLNENENSKTDIHDLDEYS IDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEG ESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHG QTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLG+HENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISN+LENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG
Sbjct:    1 MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEINLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNIKQESNMHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLHLIAVLNENENSKTDIHDLDEYSKIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGNESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGTQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGMHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISNKLENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 1064          
BLAST of SMED30033663 vs. Planmine SMEST
Match: SMESG000054684.1 (SMESG000054684.1)

HSP 1 Score: 1815.43 bits (4701), Expect = 0.000e+0
Identity = 1053/1066 (98.78%), Postives = 1058/1066 (99.25%), Query Frame = 2
Query:  773 MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKIXXXXXXXXXXXXXXXXXXXEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEMNLXXXXXXXXXXXXXXXXEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNSKQESNVHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVXXXXXXXXXXXXXXLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYXXXXXXXXXXXXXXXXXXIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGYESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGAQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGIHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISNELENDAIKKQXXXXXXXXXXXXSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERM--KTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 3964
            MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTE+NLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININN KQESN+HLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLH I VLNENENSKTDIHDLDEYS IDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEG ESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHG QTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLG+HENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISN+LENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRER+  KTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG
Sbjct:    1 MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEINLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNIKQESNMHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLHLIAVLNENENSKTDIHDLDEYSKIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGNESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGTQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGMHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISNKLENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERILVKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 1066          
BLAST of SMED30033663 vs. Planmine SMEST
Match: SMESG000054674.1 (SMESG000054674.1)

HSP 1 Score: 1237.63 bits (3201), Expect = 0.000e+0
Identity = 715/727 (98.35%), Postives = 720/727 (99.04%), Query Frame = 2
Query: 1784 LTSETNISDNVXXXXXXXXXXXXXXLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYXXXXXXXXXXXXXXXXXXIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGYESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGAQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGIHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISNELENDAIKKQXXXXXXXXXXXXSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 3964
            +++ETN S NVSDKSYTSKKKTNSSLH I VLNENENSKTDIHDLDEYS IDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEG ESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHG QTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLG+HENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISNELENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPL+NETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG
Sbjct:  437 ISNETNKSSNVSDKSYTSKKKTNSSLHLIAVLNENENSKTDIHDLDEYSKIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGNESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGTQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGMHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISNELENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLDNETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 1163          

HSP 2 Score: 733.406 bits (1892), Expect = 0.000e+0
Identity = 424/430 (98.60%), Postives = 429/430 (99.77%), Query Frame = 2
Query:  719 KNNKRQCLVIDQTAHATAMSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKIXXXXXXXXXXXXXXXXXXXEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEMNLXXXXXXXXXXXXXXXXEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNSKQESNVHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVXXXXXXXXXXXXXXLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKLFPNPNIKEKELENKNQ 2008
            +NNKRQCLVIDQTAHATAMSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTE+NLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININN KQESN+HLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLHPIGVLNENENSKTDIHDLDEYSTIDLENEKK+FPNPNIKEKELEN+NQ
Sbjct:    7 RNNKRQCLVIDQTAHATAMSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEINLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNIKQESNMHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKIFPNPNIKEKELENQNQ 436          
BLAST of SMED30033663 vs. Planmine SMEST
Match: SMESG000054674.1 (SMESG000054674.1)

HSP 1 Score: 1236.86 bits (3199), Expect = 0.000e+0
Identity = 715/727 (98.35%), Postives = 720/727 (99.04%), Query Frame = 2
Query: 1784 LTSETNISDNVXXXXXXXXXXXXXXLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYXXXXXXXXXXXXXXXXXXIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGYESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGAQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGIHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISNELENDAIKKQXXXXXXXXXXXXSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 3964
            +++ETN S NVSDKSYTSKKKTNSSLH I VLNENENSKTDIHDLDEYS IDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEG ESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHG QTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLG+HENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISNELENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPL+NETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG
Sbjct:  413 ISNETNKSSNVSDKSYTSKKKTNSSLHLIAVLNENENSKTDIHDLDEYSKIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRYFLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLSTLNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTISNLEGNESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDSEKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGTQTKKSKIISKNNRQKIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGMHENVVTPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPNKLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADSSDSSENLELSGISNELENDAIKKQYETIIEETEYEYSNHKTLLKTSDNALNDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFSTFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIYDGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLDNETITICNPQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQMIPNKRKESVIIATIGGYQVSFTTNQKIIIPKG 1139          

HSP 2 Score: 695.271 bits (1793), Expect = 0.000e+0
Identity = 407/412 (98.79%), Postives = 411/412 (99.76%), Query Frame = 2
Query:  773 MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKIXXXXXXXXXXXXXXXXXXXEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEMNLXXXXXXXXXXXXXXXXEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNSKQESNVHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVXXXXXXXXXXXXXXLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKLFPNPNIKEKELENKNQ 2008
            MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTE+NLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININN KQESN+HLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLHPIGVLNENENSKTDIHDLDEYSTIDLENEKK+FPNPNIKEKELEN+NQ
Sbjct:    1 MSANTVSSVSESYNDRNDCSKDKSIITNDSFDNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTEKSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNEDSFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEINLDKTTDSTSNSSKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNSSYNLRGKNKSSIINFKPAQNENSSSHTKESNININNIKQESNMHLLKTPTMKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQKSSCDILTSETNISDNVSDKSYTSKKKTNSSLHPIGVLNENENSKTDIHDLDEYSTIDLENEKKIFPNPNIKEKELENQNQ 412          
The following BLAST results are available for this feature:
BLAST of SMED30033663 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033663 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033663 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033663 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033663 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033663 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033663 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033663 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033663 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033663 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033663 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033663 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033663 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033663 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000054684.10.000e+098.98SMESG000054684.1[more]
SMESG000054684.10.000e+099.06SMESG000054684.1[more]
SMESG000054684.10.000e+098.78SMESG000054684.1[more]
SMESG000054674.10.000e+098.35SMESG000054674.1[more]
SMESG000054674.10.000e+098.35SMESG000054674.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30033663 ID=SMED30033663|Name=SMED30033663|organism=Schmidtea mediterranea sexual|type=transcript|length=4118bp
AAAATTTATTTTGAAACAAAGGAATGAAGAAAACTAACTTATCTAGTTTT
GAGAAATCTCCCGATACATCTAATTTTGATTGGAGTAATTCTGTTTCAGA
TATAAGTAATTTTGATATCAGTTTTAATGCAACTAAAGCTGTTAATTCAT
CTATTGTGGATCCTAAATTAATTCACATAAATAATTTGACAAAGAAAATC
AATGAAAAAAACCATTCAGTTTTAAATGTCTTTCAGAAAAGAAAACAAAA
TACCTACAAGAAAACCGTATCTGTTCCAAGAGTTCCGCACTCTAAAAGGT
GGCGAGGAAAAAAGAAAAGAAAAATTTCTGTTAAAAAAAATATTAAAAAC
TAAACCTCAGTAAATTCAAAGCGATTAGTGATTTAACTGCAGGAAATAGC
TCACCAAATGAAAACTTATTAAGCAACAAAGATAACGTGGGCATCACAAG
CGATTGTTTTATAAGTGCACCGAAGAAAGAAATTTTACAACCATGCATCA
ATTTGTCTCCCTTAGTGGGTAACAACGAAGTTTACGAAACCGTTGGGAAA
AGAAAATCTATCGTAATGTTTCCTTTGAAAGAAAATGCACCAATTAAGAA
ATCGATAACTCCAACAAATGATAATTTGCCAAGGAAAATCAACACAGTTT
CAAAAAAAAAAACAATGAAAAATATTTTATATAAAAATGTACTAACTAAG
GAAGCTTTTAAAATAAGCAAAAATAATAAAAGGCAGTGTTTGGTAATTGA
TCAAACAGCTCATGCAACAGCAATGAGTGCAAATACTGTTTCCAGTGTTA
GCGAAAGTTATAATGATCGAAACGATTGTTCCAAGGACAAATCTATTATT
ACCAATGATTCGTTTGATAACAGTAATATTTCAAATAGGAAATCTAAATT
AACAGAAGATCATGAAAATAAAAAATCTTGTGTTTTTGATTCATATTTAA
AGATTTCAGCAAATACTTCTACATCATCTGTTACAAATAATGGATCGATA
AACACATCAACTGAAAAAAGTGACTTTGGAATAAACTTCAATTTTTCAAA
TGTTTCTATCAATGAATCTTTAAATAATAAAAAAGTTCCTTTAAAAGAAT
TGAAATCAAAAGAATTTAGTGAAATTATTAAGTCAAATTTTCAATCTGTA
CTTACAAATGAGGATTCTTTTGAAGTCGAAAAGGAAAAAGGTCTTCCAAA
TTGTATTACTGAAGAAGCGTTAGGTAGCACTATGGAAAATAACTGTAAAG
ATGAAGGTCAAAATTTGGTAACTGAAATGAATTTAGATAAAACTACAGAT
TCTACCTCAAATTCTAGTAAAATATCAGATTCTGAACAATTTCGATCAAA
GTCTCTTATCTGTCAAGATATTTCAAACGTTTTACCTGAAAAATCTATAA
ATCATAAAATCCAATCTAAAATAGCTTTATCAATTTCTAAAGAAAGCAAA
AATATTACTAATTCGAGTTATAATTTGCGCGGAAAAAACAAATCTTCCAT
TATAAATTTTAAACCAGCCCAAAATGAAAATTCATCATCACATACAAAAG
AATCGAATATAAATATCAACAATAGCAAACAAGAATCAAATGTGCATTTA
CTTAAAACACCCACCATGAAAAATTCCAATGGACTTAGAAATGAACCATA
TAATAAACTGTGGAATGTAGATCTGGATAAAAGTGTATCTAATCTGGAGG
ATGAATATCTCTATTTTATTCAAAATAGTACTACATACCAAAATACAAAT
CATGTTGCGTTGCAAAAATCATCGTGTGATATTCTAACTAGTGAAACGAA
TATATCTGATAATGTATCAGATAAAAGTTACACAAGTAAAAAGAAAACCA
ATTCTTCATTGCATCCTATCGGGGTATTAAATGAGAATGAAAATTCCAAA
ACTGATATTCATGACCTTGATGAATATTCTACAATTGATCTCGAAAATGA
AAAAAAATTATTTCCAAATCCAAATATTAAAGAAAAGGAATTGGAAAATA
AAAATCAAAGTAAAATTTCAAACTTAGAAGACATTCAAGGAAAAAATAAA
TCTCAATCAAGATATTTTTTAAGAAACCGTAACAACAAAACAAAATATAA
TCAAAGTTCGACTCATAAGTCAAACACTAATAAAACTAAATCATGTTCAA
GCATATTTCCATTGGTCAATTACGATATTTCAGCTAAAAGCAATTCTTGT
CTTACTTTATCTACTCTAAATGACTCAAAAATAATGACCAGCAATAATAA
AGTTAATAACGCAGTCTCAGATATAGTCAATGATATGGTGACTGATTATT
CATCATTTCACGACTCCAGTTACAGAAACCGATCTTTGCAAATCCTCACA
AATAAATCTACCATTTCAAACCTAGAAGGCTATGAGTCGAATAAATTATC
CTTATCAGTATCTCATATTCAATTAGAGTCTCCATTAACTGTGAGCTCAT
TTATAAAAAATATAGTACATGAGAAATTATCAATTGTTGAATCAAAAGAT
CTCGATATAGATTCTGAAAAGTCTGGCTTTAAAAATGAGTTTCATTTAAA
ACAAGATTTTTATTTTGAATCTAATAACCCTAAAGAAGTATCTAAAATGA
AAACATATTTGGAACATGGAGCTCAGACCAAGAAAAGCAAAATTATATCG
AAGAATAATCGACAAAAAATAGACAGGAAGACACAATGCCAATTATCATT
ATGTAAATCTGTTGAATTTTTTCCCAACATAGAAATGGATAAAAATAATT
TAAATTGTACTGAAATAAACGAAATTAGTCAATGTAAAACTTTGGGCATA
CACGAGAATGTCGTAACTCCATTAAAATCCAATATATGTAATGAATCACA
CTTGAATCTTGACTGTAATATAAGTCAAAGATTTAGCAACAATCTTGAAA
GGATAGGAACCGTAACTAGTTATTTGGAGTCAACGAGGTTAAGCAATACT
TCGAAAAAACCAAACAAACTAGTTGTCAATTTGTCTTCGATAAAAAATCC
AAATTCATCTTTAATAGGACAGACTGAGGAAAATATAAATACAGAACAAA
TCGAAACTGAATCCGAAACTGAAACTGAATTTGGAACTGATACTGAGTCT
TCAATAGCTGATTCCAGTGATTCAAGTGAAAATCTGGAACTCAGTGGAAT
CAGCAATGAATTAGAAAATGATGCGATCAAAAAACAATATGAGACCATTA
TCGAAGAAACTGAATATGAATATTCTAATCATAAAACATTGCTCAAAACG
AGTGACAATGCATTGAATGATTCAAAGTCATCTGAAAAATCTACGTCACG
AGGTGAAGATAATAATCCTGGAGAAATTTATTTATCTCAGTTGCTATCTC
CCATCAAATGTGAAGATAAAAGAGTGAAATTTGTATTCGAAGATGATTTT
ATTGACGGATTTTCAACTTTTGTTGAGAAAAATGATTTTAATCAGTCGCT
TTCATTTGTTTCACCAACTGATCCTATTTTGACTACAGATGGAATCAATT
TCAGAGGACTTGGTAAACGGACTAGAGCGAAAACCGTGTCGACTCCATAT
GAGTCCATAATTTATGACGGAGATCAAATACAACATAGAAAAATCTATCC
ATCGCCTAATACAATAAAAATTAGGAAAGCCCGACTTAGAGAACGAATGA
AAACAAAATCGAGCCTGTCAAAATTTTTGCGTCCACTTGAAAATGAGACT
ATAACAATTTGTAATCCGCAATCAGATCAACCAGAGAAAATAAAAGTGGT
GTTTGAGAAAACTGAATATTCATATTTCGGATTTTCAAAGCTTGACAGTA
TAACTATCCCTAGAAAAGACTCAACCGTAGAATCGGTGAATAATCAGTCA
CAGACAGTTATTCAAATGATACCAAATAAACGGAAGGAATCAGTTATTAT
TGCTACTATAGGTGGATATCAGGTCTCTTTTACAACAAATCAGAAAATCA
TTATTCCTAAAGGTGTACCTTATAGATTATACAATCCAAACAATCAAATA
GTCAATATAATGATAGTGATTTCACTTCCTAGCCCTTAAAATGAAAATGA
CATTGTTTTTTATCATTCAAGAGTTATTGTAAAGATTACAAAATGTATTT
GTATATAATGGAATGATG
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protein sequence of SMED30033663-orf-1

>SMED30033663-orf-1 ID=SMED30033663-orf-1|Name=SMED30033663-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1158bp
MFPLKENAPIKKSITPTNDNLPRKINTVSKKKTMKNILYKNVLTKEAFKI
SKNNKRQCLVIDQTAHATAMSANTVSSVSESYNDRNDCSKDKSIITNDSF
DNSNISNRKSKLTEDHENKKSCVFDSYLKISANTSTSSVTNNGSINTSTE
KSDFGINFNFSNVSINESLNNKKVPLKELKSKEFSEIIKSNFQSVLTNED
SFEVEKEKGLPNCITEEALGSTMENNCKDEGQNLVTEMNLDKTTDSTSNS
SKISDSEQFRSKSLICQDISNVLPEKSINHKIQSKIALSISKESKNITNS
SYNLRGKNKSSIINFKPAQNENSSSHTKESNININNSKQESNVHLLKTPT
MKNSNGLRNEPYNKLWNVDLDKSVSNLEDEYLYFIQNSTTYQNTNHVALQ
KSSCDILTSETNISDNVSDKSYTSKKKTNSSLHPIGVLNENENSKTDIHD
LDEYSTIDLENEKKLFPNPNIKEKELENKNQSKISNLEDIQGKNKSQSRY
FLRNRNNKTKYNQSSTHKSNTNKTKSCSSIFPLVNYDISAKSNSCLTLST
LNDSKIMTSNNKVNNAVSDIVNDMVTDYSSFHDSSYRNRSLQILTNKSTI
SNLEGYESNKLSLSVSHIQLESPLTVSSFIKNIVHEKLSIVESKDLDIDS
EKSGFKNEFHLKQDFYFESNNPKEVSKMKTYLEHGAQTKKSKIISKNNRQ
KIDRKTQCQLSLCKSVEFFPNIEMDKNNLNCTEINEISQCKTLGIHENVV
TPLKSNICNESHLNLDCNISQRFSNNLERIGTVTSYLESTRLSNTSKKPN
KLVVNLSSIKNPNSSLIGQTEENINTEQIETESETETEFGTDTESSIADS
SDSSENLELSGISNELENDAIKKQYETIIEETEYEYSNHKTLLKTSDNAL
NDSKSSEKSTSRGEDNNPGEIYLSQLLSPIKCEDKRVKFVFEDDFIDGFS
TFVEKNDFNQSLSFVSPTDPILTTDGINFRGLGKRTRAKTVSTPYESIIY
DGDQIQHRKIYPSPNTIKIRKARLRERMKTKSSLSKFLRPLENETITICN
PQSDQPEKIKVVFEKTEYSYFGFSKLDSITIPRKDSTVESVNNQSQTVIQ
MIPNKRKESVIIATIGGYQVSFTTNQKIIIPKGVPYRLYNPNNQIVNIMI
VISLPSP*
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protein sequence of SMED30033663-orf-2

>SMED30033663-orf-2 ID=SMED30033663-orf-2|Name=SMED30033663-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=110bp
MKKTNLSSFEKSPDTSNFDWSNSVSDISNFDISFNATKAVNSSIVDPKLI
HINNLTKKINEKNHSVLNVFQKRKQNTYKKTVSVPRVPHSKRWRGKKKRK
ISVKKNIKN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000014zeta neoblast
PLANA:0000101muscle cell
PLANA:0000142posterior region of the whole animal
PLANA:0000418head
PLANA:0000420parapharyngeal region
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002111X2 cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 473..493
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 895..917
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 827..857
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 840..857
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 483..498
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 469..498