SMED30033629

Overview
NameSMED30033629
Smed IDSMED30033629
Length (bp)1913
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30033629 (SMED30033629) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30033629 (SMED30033629) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30033629 (SMED30033629) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30033629 (SMED30033629) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30033629

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30033629SMESG000068800.1 SmedASXL_012972SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30033629 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001638:52011..61568 +9362
Homology
[Close]
BLAST of SMED30033629 vs. TrEMBL
Match: A0A0H3YJ76 (Slc17a-11 (Fragment) OS=Schmidtea mediterranea OX=79327 GN=slc17a-11 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 5.696e-7
Identity = 67/298 (22.48%), Postives = 133/298 (44.63%), Query Frame = 1 
Query:  373 PIFNWFGFPIMLKFHIKVCYFLLIHLNLFDHTMYNQIYELRQFYYQCENIAFKIPSRLVSLTSYKFVKYL-FDHHQIFKLFDIKKLNMSERILKSMDKFITALDKNASHRSIYGYVETCRSCGHKFSYLKEDFSIKL-IESFDYIINNK-FNYLIGCKKCYGSSQVEIKLERLADFLYIDCPRGVNKTFQELNEIILEKPSKNLKLQGIIELKCPDQFDDLPEKEPK----IEEFIMKNAVKPK------FEFRIHFRNTFGWHCVDTNSGISIDPISESDIKISPNKVKILVFAEIN 1227
             I NW      LK   K+  FL++HL++F     + + EL+  Y      A      LV+   + F+  L      + K  D  + N   +ILKS++ ++  ++        Y +   CRSC   +S L  D+ + L  + + + I+ K  +Y I C+KC   ++++I ++ ++ FL I    G  +  +   E      + +  L G++E K     DD P  + K     ++++   A+  K       ++ IH+R+  GW  +  N G+ +   ++S    +    + L++ +++
Sbjct:   93 SIINWLKLS-TLKVQSKIICFLILHLDVFRLNSDSLLNELKDEYSIINKFANLCKMELVNSLCFNFISKLSLLSKSVSKNEDFDE-NFENQILKSLNNYLININSKERVLCKYTFHFDCRSCNVVYSKLHCDYVLTLPYDKYYFRISKKGISYRISCEKCSNRAEIKITVQNISKFLIIHNENGCRENIKRF-EAGFHLRNDSFPLIGVLESK-----DDFPRIDGKYQMNFQQYLTTIAISEKPAGSISDDYAIHYRHQNGWFTMSEN-GLPLSCPADSITTTAGLSARFLIYGKLS 381
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BLAST of SMED30033629 vs. Planmine SMEST
Match: SMESG000068800.1 (SMESG000068800.1)

HSP 1 Score: 1162.13 bits (3005), Expect = 0.000e+0
Identity = 608/615 (98.86%), Postives = 612/615 (99.51%), Query Frame = 1 
Query:   43 MDLCPVCLENNKESSLINIGVHSKVLACKSEDCIYIEYEDINNTKPDSDLNYEINATEDFSDIECXXXXXXXXXXXXXXXXXXXXXXXXYQVLPIQRHLMLAIKDANKLTPIFNWFGFPIMLKFHIKVCYFLLIHLNLFDHTMYNQIYELRQFYYQCENIAFKIPSRLVSLTSYKFVKYLFDHHQIFKLFDIKKLNMSERILKSMDKFITALDKNASHRSIYGYVETCRSCGHKFSYLKEDFSIKLIESFDYIINNKFNYLIGCKKCYGSSQVEIKLERLADFLYIDCPRGVNKTFQELNEIILEKPSKNLKLQGIIELKCPDQFDDLPEKEPKIEEFIMKNAVKPKFEFRIHFRNTFGWHCVDTNSGISIDPISESDIKISPNKVKILVFAEINDPSCFRLSDLHLPIYKVLEQXXXXXXXXXXXXTESIKYWIILFKYRDHCLRKGDNSKSFLNKIATRITAKFNLHLKRRQNRIKEKFKGTQNEETFTSVRISDESESNELGETHNELMIEGNQDDKLESTIDFTELLVELKNNIPKERVDNIGNQWNNAESVEDGKKDIWSIFQQEDGPNIFNLLPKKSQPTRSAVREDDTETMIDQLISMKKKKRKLCEH 1887
            MDLCPVCLENN+ESSLINIG+HSKVLACKSEDCIYIEYEDINNTKPDSDLNYEINATEDFSDIECDLSTTDSEDDNSSLSNKNKLKFSKYQVLPIQRHLMLAIKDANKLTPIFNWFGFPIMLKFHIKVCYFLLIHLN FDHTMYNQIYELRQFYYQCENIAFKIPSRLVSLTSYKFVKYLFDHHQIFKLFDIKKLNMSERILKSMDKFITALDKNASHRSIYGYVETCRSCGHKFSYLKEDFSIKLIESFDYIINNKFNYL GCKKCYGSSQVEIKLERLADFLYIDCPRGVNKTFQELNEIILEKPSKNLKLQGIIELKCPDQFDDLPEKEPKIEEFIMKNAVKPKFEFRIHFRNTFGWHCVDTNSGISIDPISESDIKISPNKVKILVFAEINDPSCFRLSDLHLPIYKVLEQIKKPPKPMIKYPTESIKYWIILFKYRDHCLRKGDNSKSFLNKIATRITAKFNLHLKRRQNRIKEKFKGTQNEETFTSVRISDESESNELGETHNELMIEGNQDDKLESTIDFTELLVELKNNIPKERVDNIG+QWNNAESVEDGKKDIWSIFQQEDGPNIFN+LP KSQPTRSAVREDDTETMIDQLISMKKKKRKLCEH
Sbjct:    1 MDLCPVCLENNQESSLINIGIHSKVLACKSEDCIYIEYEDINNTKPDSDLNYEINATEDFSDIECDLSTTDSEDDNSSLSNKNKLKFSKYQVLPIQRHLMLAIKDANKLTPIFNWFGFPIMLKFHIKVCYFLLIHLNFFDHTMYNQIYELRQFYYQCENIAFKIPSRLVSLTSYKFVKYLFDHHQIFKLFDIKKLNMSERILKSMDKFITALDKNASHRSIYGYVETCRSCGHKFSYLKEDFSIKLIESFDYIINNKFNYLTGCKKCYGSSQVEIKLERLADFLYIDCPRGVNKTFQELNEIILEKPSKNLKLQGIIELKCPDQFDDLPEKEPKIEEFIMKNAVKPKFEFRIHFRNTFGWHCVDTNSGISIDPISESDIKISPNKVKILVFAEINDPSCFRLSDLHLPIYKVLEQIKKPPKPMIKYPTESIKYWIILFKYRDHCLRKGDNSKSFLNKIATRITAKFNLHLKRRQNRIKEKFKGTQNEETFTSVRISDESESNELGETHNELMIEGNQDDKLESTIDFTELLVELKNNIPKERVDNIGSQWNNAESVEDGKKDIWSIFQQEDGPNIFNILPNKSQPTRSAVREDDTETMIDQLISMKKKKRKLCEH 615
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BLAST of SMED30033629 vs. Planmine SMEST
Match: SMESG000068800.1 (SMESG000068800.1)

HSP 1 Score: 1122.07 bits (2901), Expect = 0.000e+0
Identity = 593/615 (96.42%), Postives = 597/615 (97.07%), Query Frame = 1 
Query:   43 MDLCPVCLENNKESSLINIGVHSKVLACKSEDCIYIEYEDINNTKPDSDLNYEINATEDFSDIECXXXXXXXXXXXXXXXXXXXXXXXXYQVLPIQRHLMLAIKDANKLTPIFNWFGFPIMLKFHIKVCYFLLIHLNLFDHTMYNQIYELRQFYYQCENIAFKIPSRLVSLTSYKFVKYLFDHHQIFKLFDIKKLNMSERILKSMDKFITALDKNASHRSIYGYVETCRSCGHKFSYLKEDFSIKLIESFDYIINNKFNYLIGCKKCYGSSQVEIKLERLADFLYIDCPRGVNKTFQELNEIILEKPSKNLKLQGIIELKCPDQFDDLPEKEPKIEEFIMKNAVKPKFEFRIHFRNTFGWHCVDTNSGISIDPISESDIKISPNKVKILVFAEINDPSCFRLSDLHLPIYKVLEQXXXXXXXXXXXXTESIKYWIILFKYRDHCLRKGDNSKSFLNKIATRITAKFNLHLKRRQNRIKEKFKGTQNEETFTSVRISDESESNELGETHNELMIEGNQDDKLESTIDFTELLVELKNNIPKERVDNIGNQWNNAESVEDGKKDIWSIFQQEDGPNIFNLLPKKSQPTRSAVREDDTETMIDQLISMKKKKRKLCEH 1887
            MDLCPVCLENN+ESSLINIG+HSKVLACKSED               SDLNYEINATEDFSDIECDLSTTDSEDDNSSLSNKNKLKFSKYQVLPIQRHLMLAIKDANKLTPIFNWFGFPIMLKFHIKVCYFLLIHLN FDHTMYNQIYELRQFYYQCENIAFKIPSRLVSLTSYKFVKYLFDHHQIFKLFDIKKLNMSERILKSMDKFITALDKNASHRSIYGYVETCRSCGHKFSYLKEDFSIKLIESFDYIINNKFNYL GCKKCYGSSQVEIKLERLADFLYIDCPRGVNKTFQELNEIILEKPSKNLKLQGIIELKCPDQFDDLPEKEPKIEEFIMKNAVKPKFEFRIHFRNTFGWHCVDTNSGISIDPISESDIKISPNKVKILVFAEINDPSCFRLSDLHLPIYKVLEQIKKPPKPMIKYPTESIKYWIILFKYRDHCLRKGDNSKSFLNKIATRITAKFNLHLKRRQNRIKEKFKGTQNEETFTSVRISDESESNELGETHNELMIEGNQDDKLESTIDFTELLVELKNNIPKERVDNIG+QWNNAESVEDGKKDIWSIFQQEDGPNIFN+LP KSQPTRSAVREDDTETMIDQLISMKKKKRKLCEH
Sbjct:    1 MDLCPVCLENNQESSLINIGIHSKVLACKSEDY--------------SDLNYEINATEDFSDIECDLSTTDSEDDNSSLSNKNKLKFSKYQVLPIQRHLMLAIKDANKLTPIFNWFGFPIMLKFHIKVCYFLLIHLNFFDHTMYNQIYELRQFYYQCENIAFKIPSRLVSLTSYKFVKYLFDHHQIFKLFDIKKLNMSERILKSMDKFITALDKNASHRSIYGYVETCRSCGHKFSYLKEDFSIKLIESFDYIINNKFNYLTGCKKCYGSSQVEIKLERLADFLYIDCPRGVNKTFQELNEIILEKPSKNLKLQGIIELKCPDQFDDLPEKEPKIEEFIMKNAVKPKFEFRIHFRNTFGWHCVDTNSGISIDPISESDIKISPNKVKILVFAEINDPSCFRLSDLHLPIYKVLEQIKKPPKPMIKYPTESIKYWIILFKYRDHCLRKGDNSKSFLNKIATRITAKFNLHLKRRQNRIKEKFKGTQNEETFTSVRISDESESNELGETHNELMIEGNQDDKLESTIDFTELLVELKNNIPKERVDNIGSQWNNAESVEDGKKDIWSIFQQEDGPNIFNILPNKSQPTRSAVREDDTETMIDQLISMKKKKRKLCEH 601
[Close]
BLAST of SMED30033629 vs. Planmine SMEST
Match: SMESG000076754.1 (SMESG000076754.1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.804e-19
Identity = 75/305 (24.59%), Postives = 138/305 (45.25%), Query Frame = 1 
Query:  376 IFNWFGFPIMLKFHIKVCYFLLIHLNLFDHTMYNQIYELRQFYYQCENIAFKIPSRLVSLTSYKFVKYLF-------DHHQIFKLFDIKKLNMSERILKSMDKFITALDKNASHRSIYGYVETCRSCGHKFSYLKEDFSIKLIESFDYIINNKFNYL---IGCKKCYGSSQVEIKLERLADFLYIDCPRGVNKTFQELNEIILEKPSKNLKLQGIIELKCPDQFDDLPEKEPKIEEFI-----MKNAVKPKFEFRIHFRNTFGWHCVDTNSGISIDPISESDIKISPNKVKILVFAEINDPSCFR 1245
            +FNW   P ++K H K+   L +HL++F       I ++++ Y  CE +A + P   V    Y+F+  L+        +H I K        M ER++  + +     D   S +  Y    +C  C +K S   +++ + L  +  +++  K N L   I C  C  + +  I  +R+ +F     P+G+ +   +    I+   ++ L + GI+E      F ++PE      E++     M N  +PK  + +H RN  GW+ ++    +  +P  E+   I  N VK ++F  I+DP  +R
Sbjct:  250 LFNWLRMPYLMKTHSKIVRILSLHLDVFKFKNNVFIDDIKREYSICETLANQFPMEKVRPVFYRFMNCLYGIIDKTPSNHLINK-------EMDERVIDLLLRLFEKYDSKGSLKLEYTTEFSCSFCDYKGSVNSKNYILSLKRN-RFLMKFKENQLIHNIKCLICKNALKETISFKRIPEFAIFHYPKGLREDISKYENKIITDDNRKLSIVGIVESSSEYPFAEVPENPISYLEYVFNDVTMDNQFRPK--YTVHVRNKRGWYSLNGYQQLLCNP-QEALGPIDFNHVKFIIFGVISDPQAYR 543
[Close]
BLAST of SMED30033629 vs. Planmine SMEST
Match: SMESG000019961.1 (SMESG000019961.1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.028e-10
Identity = 67/297 (22.56%), Postives = 133/297 (44.78%), Query Frame = 1 
Query:  376 IFNWFGFPIMLKFHIKVCYFLLIHLNLFDHTMYNQIYELRQFYYQCENIAFKIPSRLVSLTSYKFVKYL-FDHHQIFKLFDIKKLNMSERILKSMDKFITALDKNASHRSIYGYVETCRSCGHKFSYLKEDFSIKL-IESFDYIINNK-FNYLIGCKKCYGSSQVEIKLERLADFLYIDCPRGVNKTFQELNEIILEKPSKNLKLQGIIELKCPDQFDDLPEKEPK----IEEFIMKNAVKPKF------EFRIHFRNTFGWHCVDTNSGISIDPISESDIKISPNKVKILVFAEIN 1227
            I NW      LK   K+  FL++HL++F   + + + EL+  Y      A      LV+   + F+  L      + K  D  + N   +ILKS++ ++   +        Y +   CRSC   +S L  D+ + L  + + + I+ K  +Y I C+KC   ++++I ++ +  FL I    G  +  +   E      + +  L G++E K     DD P+ + K     ++++   A+  K       ++ IH+R+  GW  +  N G+ +   ++S    +    + L++ +++
Sbjct:  109 IINWLKLS-TLKVQSKIICFLILHLDVFRLNIDSLLNELKNEYSIINKFANLFKMELVNSLCFNFISKLSLLSKSVSKNEDFDE-NFENQILKSLNNYLINFNSKERVLCKYTFHFDCRSCNVVYSKLHCDYVLNLPYDKYYFRISKKGISYRISCEKCSNRAEIKITVQNIPKFLIIHNENGCRENIKRF-EAGFHLRNDSFPLIGVLESK-----DDFPQIDGKYQMNFQQYLTTIAISEKPAGSISDDYAIHYRHQNGWFTMSEN-GLPLSCPTDSITTTAGLSARFLIYGKLS 396
[Close]
BLAST of SMED30033629 vs. Planmine SMEST
Match: SMESG000019961.1 (SMESG000019961.1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.269e-7
Identity = 61/258 (23.64%), Postives = 114/258 (44.19%), Query Frame = 1 
Query:  373 PIFNWFGFPIMLKFHIKVCYFLLIHLNLFDHTMYNQIYELRQFYYQCENIAFKIPSRLVSLTSYKFVKYL-FDHHQIFKLFDIKKLNMSERILKSMDKFITALDKNASHRSIYGYVETCRSCGHKFSYLKEDFSIKL-IESFDYIINNK-FNYLIGCKKCYGSSQVEIKLERLADFLYIDCPRGVNKTFQELNEIILEKPSKNLKLQGIIELKCPDQFDDLPEKEPK----IEEFIMKNAVKPKF------EFRIHFR 1107
             I NW      LK   K+  FL++HL++F   + + + EL+  Y      A      LV+   + F+  L      + K  D  + N   +ILKS++ ++   +        Y +   CRSC   +S L  D+ + L  + + + I+ K  +Y I C+KC   ++++I ++ +  FL I    G  +  +   E      + +  L G++E K     DD P+ + K     ++++   A+  K       ++ IH+R
Sbjct:  108 SIINWLKLS-TLKVQSKIICFLILHLDVFRLNIDSLLNELKNEYSIINKFANLFKMELVNSLCFNFISKLSLLSKSVSKNEDFDE-NFENQILKSLNNYLINFNSKERVLCKYTFHFDCRSCNVVYSKLHCDYVLNLPYDKYYFRISKKGISYRISCEKCSNRAEIKITVQNIPKFLIIHNENGCRENIKRF-EAGFHLRNDSFPLIGVLESK-----DDFPQIDGKYQMNFQQYLTTIAISEKPAGSISDDYAIHYR 357
The following BLAST results are available for this feature:
BLAST of SMED30033629 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033629 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033629 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033629 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033629 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033629 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033629 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033629 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0H3YJ765.696e-722.48Slc17a-11 (Fragment) OS=Schmidtea mediterranea OX=... [more]
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BLAST of SMED30033629 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033629 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033629 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033629 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033629 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033629 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000068800.10.000e+098.86SMESG000068800.1[more]
SMESG000068800.10.000e+096.42SMESG000068800.1[more]
SMESG000076754.11.804e-1924.59SMESG000076754.1[more]
SMESG000019961.11.028e-1022.56SMESG000019961.1[more]
SMESG000019961.11.269e-723.64SMESG000019961.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30033629 ID=SMED30033629|Name=SMED30033629|organism=Schmidtea mediterranea sexual|type=transcript|length=1913bp
ATCTATTCCGGGAAACATAAATTAATAAAATTTATTTGACTTATGGACTT
ATGCCCAGTTTGTTTGGAAAACAACAAGGAAAGTTCACTTATCAACATAG
GAGTTCATTCAAAAGTACTTGCTTGTAAATCAGAAGATTGTATATATATT
GAGTATGAAGATATAAATAACACTAAACCAGATTCAGATTTAAACTACGA
AATTAATGCAACGGAAGATTTTTCCGATATAGAGTGCGACTTATCTACTA
CTGATAGTGAAGATGATAATTCAAGTTTATCTAATAAAAATAAATTAAAA
TTTTCCAAATATCAAGTTTTACCTATTCAACGTCATTTAATGCTTGCAAT
AAAAGATGCTAATAAACTAACACCAATTTTCAATTGGTTTGGCTTTCCAA
TTATGTTGAAATTTCATATAAAAGTGTGCTACTTTCTGTTGATTCATTTA
AATTTATTTGATCATACTATGTATAATCAAATCTATGAATTAAGGCAATT
TTATTACCAATGTGAAAATATAGCTTTTAAAATTCCAAGTAGACTCGTAT
CATTGACATCATATAAATTTGTCAAATACCTATTCGACCATCATCAAATA
TTCAAATTATTTGATATAAAAAAATTAAACATGTCTGAAAGAATATTAAA
GAGTATGGATAAATTTATCACCGCATTGGATAAAAATGCTTCACATAGGT
CGATTTACGGCTATGTAGAAACTTGTCGAAGTTGTGGTCACAAATTTAGC
TATTTAAAAGAAGATTTTTCAATTAAATTAATCGAAAGTTTTGATTATAT
TATCAACAATAAGTTCAATTATTTAATTGGATGCAAGAAATGCTATGGAT
CATCTCAAGTTGAAATTAAATTAGAAAGATTGGCAGATTTTCTCTATATC
GATTGTCCTCGAGGTGTGAATAAAACTTTTCAAGAATTAAATGAAATAAT
TCTTGAAAAACCCTCTAAAAACCTAAAACTACAAGGGATTATTGAATTGA
AATGTCCAGATCAATTTGATGATTTGCCGGAAAAAGAACCCAAAATTGAA
GAGTTCATCATGAAAAATGCCGTTAAACCAAAATTTGAGTTTAGGATTCA
TTTTCGAAATACATTTGGCTGGCATTGTGTTGATACTAATTCCGGTATTT
CTATCGACCCAATCAGCGAATCCGACATCAAAATTTCACCGAATAAAGTT
AAAATTTTAGTTTTTGCGGAAATAAACGATCCTTCATGTTTCCGATTAAG
CGATTTGCATTTGCCCATTTATAAAGTGTTGGAACAAATAAAAAAGCCCC
CCAAACCGATGATAAAATATCCAACTGAATCAATAAAATACTGGATAATA
CTATTCAAATATCGGGATCATTGCCTACGCAAAGGGGATAATTCCAAATC
ATTTCTCAATAAGATCGCAACTAGAATCACAGCAAAATTTAATTTGCATT
TGAAACGGCGCCAGAATCGCATAAAGGAGAAATTCAAGGGAACACAAAAT
GAAGAAACATTTACATCTGTTAGGATTTCCGATGAGAGTGAGAGCAATGA
ATTAGGGGAAACTCACAATGAGTTAATGATTGAGGGAAATCAAGATGACA
AATTAGAAAGCACTATTGATTTCACAGAATTACTCGTAGAACTCAAGAAC
AACATTCCAAAGGAAAGAGTTGACAACATTGGAAATCAATGGAACAATGC
AGAGTCAGTAGAGGATGGTAAAAAAGACATCTGGAGCATATTCCAACAAG
AAGATGGTCCAAATATTTTCAATCTACTGCCAAAAAAATCACAACCAACC
AGATCTGCAGTTCGGGAGGATGACACCGAGACAATGATCGATCAACTGAT
TAGTATGAAGAAGAAAAAAAGAAAACTTTGTGAACATTGAATTCGTTTTT
TGTCAATAAATTT
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protein sequence of SMED30033629-orf-1

>SMED30033629-orf-1 ID=SMED30033629-orf-1|Name=SMED30033629-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=616bp
MDLCPVCLENNKESSLINIGVHSKVLACKSEDCIYIEYEDINNTKPDSDL
NYEINATEDFSDIECDLSTTDSEDDNSSLSNKNKLKFSKYQVLPIQRHLM
LAIKDANKLTPIFNWFGFPIMLKFHIKVCYFLLIHLNLFDHTMYNQIYEL
RQFYYQCENIAFKIPSRLVSLTSYKFVKYLFDHHQIFKLFDIKKLNMSER
ILKSMDKFITALDKNASHRSIYGYVETCRSCGHKFSYLKEDFSIKLIESF
DYIINNKFNYLIGCKKCYGSSQVEIKLERLADFLYIDCPRGVNKTFQELN
EIILEKPSKNLKLQGIIELKCPDQFDDLPEKEPKIEEFIMKNAVKPKFEF
RIHFRNTFGWHCVDTNSGISIDPISESDIKISPNKVKILVFAEINDPSCF
RLSDLHLPIYKVLEQIKKPPKPMIKYPTESIKYWIILFKYRDHCLRKGDN
SKSFLNKIATRITAKFNLHLKRRQNRIKEKFKGTQNEETFTSVRISDESE
SNELGETHNELMIEGNQDDKLESTIDFTELLVELKNNIPKERVDNIGNQW
NNAESVEDGKKDIWSIFQQEDGPNIFNLLPKKSQPTRSAVREDDTETMID
QLISMKKKKRKLCEH*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell