Pre-rRNA-processing protein esf2
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30033469 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 1
Homology
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Human
Match: ABT1 (activator of basal transcription 1 [Source:HGNC Symbol;Acc:HGNC:17369]) HSP 1 Score: 63.5438 bits (153), Expect = 2.686e-11 Identity = 37/139 (26.62%), Postives = 72/139 (51.80%), Query Frame = 2 Query: 62 IPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSN--------------TQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLR-DIIKSKKE 433 +PG+V+L IP ++ ++SA+G +GRV+ + + +++ Y EGWVEF++ AK A L+ ++ P+ + N+K+L FTWS + +E + + + +RLR ++ ++K+E Sbjct: 44 VPGIVYLGHIPPRFRPLHVRNLLSAYGEVGRVFFQAEDRFVRRKKKAAAAAGGKKRSYTKDYTEGWVEFRDKRIAKRVAASLHNTPMGARRRSPFRYDLWNLKYLHRFTWSHL-SEHLAFERQVRRQRLRAEVAQAKRE 181
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Celegans
Match: F57B10.8 (pep chromosome:WBcel235:I:6548644:6550447:-1 gene:WBGene00019005.1 transcript:F57B10.8.3 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F57B10.8) HSP 1 Score: 51.2174 bits (121), Expect = 2.006e-7 Identity = 31/96 (32.29%), Postives = 49/96 (51.04%), Query Frame = 2 Query: 68 GVVFLSSIPYGLNVALLQTIMSAFGP--IGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTW 349 GVVF S+IP NV ++ P +GR++L R N K +Y EGW+E + + AK A++++ K P ++ NI++L F W Sbjct: 82 GVVFFSTIPPKYNVVRMREYFEKRCPGQVGRIFLAR-NKHSKNPQYLYSEGWMELKKKKIAKAIAEQIDNTPIGGKNKDPVSSMLWNIRYLSGFKW 176
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Celegans
Match: F57B10.8 (pep chromosome:WBcel235:I:6548644:6550397:-1 gene:WBGene00019005.1 transcript:F57B10.8.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F57B10.8) HSP 1 Score: 51.2174 bits (121), Expect = 2.006e-7 Identity = 31/96 (32.29%), Postives = 49/96 (51.04%), Query Frame = 2 Query: 68 GVVFLSSIPYGLNVALLQTIMSAFGP--IGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTW 349 GVVF S+IP NV ++ P +GR++L R N K +Y EGW+E + + AK A++++ K P ++ NI++L F W Sbjct: 82 GVVFFSTIPPKYNVVRMREYFEKRCPGQVGRIFLAR-NKHSKNPQYLYSEGWMELKKKKIAKAIAEQIDNTPIGGKNKDPVSSMLWNIRYLSGFKW 176
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Celegans
Match: F57B10.8 (pep chromosome:WBcel235:I:6548644:6550436:-1 gene:WBGene00019005.1 transcript:F57B10.8.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F57B10.8) HSP 1 Score: 51.2174 bits (121), Expect = 2.006e-7 Identity = 31/96 (32.29%), Postives = 49/96 (51.04%), Query Frame = 2 Query: 68 GVVFLSSIPYGLNVALLQTIMSAFGP--IGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTW 349 GVVF S+IP NV ++ P +GR++L R N K +Y EGW+E + + AK A++++ K P ++ NI++L F W Sbjct: 82 GVVFFSTIPPKYNVVRMREYFEKRCPGQVGRIFLAR-NKHSKNPQYLYSEGWMELKKKKIAKAIAEQIDNTPIGGKNKDPVSSMLWNIRYLSGFKW 176
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Fly
Match: CG10993 (gene:FBgn0030524 transcript:FBtr0073837) HSP 1 Score: 64.6994 bits (156), Expect = 2.750e-12 Identity = 34/104 (32.69%), Postives = 57/104 (54.81%), Query Frame = 2 Query: 68 GVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTI 379 GV+++S++P + + L+ I+ +G IGR +LR RK ++ EGWVEF++ AK LN KK P+ + +++LP F W+ + NE + I Sbjct: 65 GVIYISNLPKHMTLTRLREILGEYGAIGRAFLRSQKLSRKPHNFLFAEGWVEFKSKRVAKQIVPLLNYKQISTHKKSPFYYSLWIMEYLPRFKWARL-NELMNI 167
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Fly
Match: CG32708 (gene:FBgn0052708 transcript:FBtr0071286) HSP 1 Score: 59.6918 bits (143), Expect = 2.420e-10 Identity = 40/145 (27.59%), Postives = 72/145 (49.66%), Query Frame = 2 Query: 68 GVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKV--------VIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLR-DIIKSKKEGREVKGILNYSKFL 475 G++++S+IP +NV L+ I+ +G IGRVYL+ K + + EGWVEF++ AK LN K + + ++K+LP F W + E + + +RL ++ +++KE + L+ S+F+ Sbjct: 74 GIIYISNIPKHMNVTRLREILGEYGAIGRVYLQPEKLSSAKAKKNKRKRYNIHFTEGWVEFKSKRVAKQIVPLLNNKQISGRKTSQFYDSLWSMKYLPRFKWVHL-TERMNYEQAVHKQRLHTEVSQARKETTFFQNNLDKSEFI 217
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Fly
Match: CG32706 (gene:FBgn0052706 transcript:FBtr0071287) HSP 1 Score: 56.9954 bits (136), Expect = 1.680e-9 Identity = 32/94 (34.04%), Postives = 49/94 (52.13%), Query Frame = 2 Query: 68 GVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTW 349 GV+ +S+IP ++ L+ IM+ +GRVY++ K +GWVEF + AK A ELN + K + G++ +KFLP F W Sbjct: 61 GVILISNIPKDMDGDCLKEIMNLHSVVGRVYVQPETLSSFKTKKNMRKGWVEFISKSGAKKIALELNNKPITDGKSSRFRGLLWKMKFLPRFKW 154
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Fly
Match: CG6999 (gene:FBgn0030085 transcript:FBtr0071288) HSP 1 Score: 56.6102 bits (135), Expect = 2.543e-9 Identity = 32/94 (34.04%), Postives = 49/94 (52.13%), Query Frame = 2 Query: 68 GVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTW 349 GV+ +S+IP ++ L+ IM+ +GRVY++ K +GWVEF + AK A ELN + K + G++ +KFLP F W Sbjct: 61 GVILISNIPKDMDGDCLKEIMNLHSVVGRVYVQPETLSSFKTKKNMRKGWVEFISKSGAKKIALELNNKPITDGKSSRFRGLLWKMKFLPRFKW 154
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Fly
Match: CG40813 (gene:FBgn0085521 transcript:FBtr0346695) HSP 1 Score: 51.9878 bits (123), Expect = 8.886e-8 Identity = 27/92 (29.35%), Postives = 49/92 (53.26%), Query Frame = 2 Query: 83 SSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDI 358 S+IP + + L+ I+ +G IGR +LR ++ K +++ EGWVEF++ AK LN P+ + ++++LP F W+ + Sbjct: 75 SNIPKHMTLTRLREILGEYGGIGRAFLRSQSS--KHHNILFAEGWVEFKSKHVAKQLVLLLNNKQISTRNNSPFYYSLWSMEYLPRFKWARL 164
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Zebrafish
Match: abt1 (activator of basal transcription 1 [Source:ZFIN;Acc:ZDB-GENE-050522-127]) HSP 1 Score: 63.1586 bits (152), Expect = 2.750e-11 Identity = 38/132 (28.79%), Postives = 71/132 (53.79%), Query Frame = 2 Query: 62 IPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSN-------TQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLR-DIIKSKKE 433 +PG+V+L IP + ++ ++SA+G IGR++L+ + + K + EGWVEF++ AK A L+ N K+ + + +IK+L F W + +E + + ++R+R +I ++KKE Sbjct: 84 VPGIVYLGHIPPRMRPKHMRNLLSAYGEIGRIFLQPEDRCVKRKKKKAGCKSSSFTEGWVEFRDKRVAKRVAASLHNTPMANRKRSRFSSDLWSIKYLHRFQWCHL-SERLAYEQTVYHQRMRTEISQAKKE 214
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Zebrafish
Match: abt1 (activator of basal transcription 1 [Source:ZFIN;Acc:ZDB-GENE-050522-127]) HSP 1 Score: 63.1586 bits (152), Expect = 2.750e-11 Identity = 38/132 (28.79%), Postives = 71/132 (53.79%), Query Frame = 2 Query: 62 IPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSN-------TQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLR-DIIKSKKE 433 +PG+V+L IP + ++ ++SA+G IGR++L+ + + K + EGWVEF++ AK A L+ N K+ + + +IK+L F W + +E + + ++R+R +I ++KKE Sbjct: 84 VPGIVYLGHIPPRMRPKHMRNLLSAYGEIGRIFLQPEDRCVKRKKKKAGCKSSSFTEGWVEFRDKRVAKRVAASLHNTPMANRKRSRFSSDLWSIKYLHRFQWCHL-SERLAYEQTVYHQRMRTEISQAKKE 214
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Zebrafish
Match: abt1 (activator of basal transcription 1 [Source:ZFIN;Acc:ZDB-GENE-050522-127]) HSP 1 Score: 46.9802 bits (110), Expect = 2.950e-6 Identity = 24/76 (31.58%), Postives = 42/76 (55.26%), Query Frame = 2 Query: 62 IPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSN-------TQRKKKVVIYEEGWVEFQNLEDAKLAAKELN 268 +PG+V+L IP + ++ ++SA+G IGR++L+ + + K + EGWVEF++ AK A L+ Sbjct: 84 VPGIVYLGHIPPRMRPKHMRNLLSAYGEIGRIFLQPEDRCVKRKKKKAGCKSSSFTEGWVEFRDKRVAKRVAASLH 159
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Mouse
Match: Abt1 (activator of basal transcription 1 [Source:MGI Symbol;Acc:MGI:1353636]) HSP 1 Score: 65.4698 bits (158), Expect = 3.699e-12 Identity = 39/140 (27.86%), Postives = 72/140 (51.43%), Query Frame = 2 Query: 62 IPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVI---------------YEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLR-DIIKSKKE 433 +PG+V+L +P ++ ++SA+G +GRV+ + + K+K Y EGWVEF++ AK A L+ K+ P+ + N+K+L FTWS + +E + + + +RLR ++ ++K+E Sbjct: 46 VPGIVYLGHVPPRFRPLHVRNLLSAYGEVGRVFFQAEDHFVKRKKKAAAAAGGKKGAKYSKDYTEGWVEFRDKRVAKRVAASLHNTPMGARKRSPFRYDLWNLKYLHRFTWSHL-SEHLAFERQVRRQRLRAEVAQAKRE 184
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Mouse
Match: Gm4064 (predicted gene 4064 [Source:MGI Symbol;Acc:MGI:3782239]) HSP 1 Score: 53.9138 bits (128), Expect = 6.526e-8 Identity = 28/78 (35.90%), Postives = 39/78 (50.00%), Query Frame = 2 Query: 47 MEEVDIPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVF 280 M E D PG +F+ + LQ I FGP+ RV L R +K + + + F+ L DAK A KE+NGV+ Sbjct: 1 MAETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAF----LTFRRLADAKNAVKEMNGVIL 74
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Mouse
Match: Gm10352 (predicted gene 10352 [Source:MGI Symbol;Acc:MGI:3708825]) HSP 1 Score: 53.5286 bits (127), Expect = 7.025e-8 Identity = 28/78 (35.90%), Postives = 39/78 (50.00%), Query Frame = 2 Query: 47 MEEVDIPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVF 280 M E D PG +F+ + LQ I FGP+ RV L R +K + + + F+ L DAK A KE+NGV+ Sbjct: 1 MAETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAF----LTFRRLADAKNAVKEMNGVIL 74
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Mouse
Match: Gm10352 (predicted gene 10352 [Source:MGI Symbol;Acc:MGI:3708825]) HSP 1 Score: 53.5286 bits (127), Expect = 7.025e-8 Identity = 28/78 (35.90%), Postives = 39/78 (50.00%), Query Frame = 2 Query: 47 MEEVDIPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVF 280 M E D PG +F+ + LQ I FGP+ RV L R +K + + + F+ L DAK A KE+NGV+ Sbjct: 1 MAETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAF----LTFRRLADAKNAVKEMNGVIL 74
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Mouse
Match: Gm10256 (predicted gene 10256 [Source:MGI Symbol;Acc:MGI:3710530]) HSP 1 Score: 53.5286 bits (127), Expect = 7.025e-8 Identity = 28/78 (35.90%), Postives = 39/78 (50.00%), Query Frame = 2 Query: 47 MEEVDIPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVF 280 M E D PG +F+ + LQ I FGP+ RV L R +K + + + F+ L DAK A KE+NGV+ Sbjct: 1 MAETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAF----LTFRRLADAKNAVKEMNGVIL 74
BLAST of Pre-rRNA-processing protein esf2 vs. UniProt/SwissProt
Match: sp|Q6FWS2|ESF2_CANGA (Pre-rRNA-processing protein ESF2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=ESF2 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.466e-18 Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 2 Query: 68 GVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKK--------KVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDI 358 GVV+LS IP + A ++ I+S FG I R++L+R + + K K ++YEEGW EF DAKL A+ LNG + K + I N+K+LP F W+D+ Sbjct: 114 GVVYLSRIPPYMKPAKMRQILSRFGEIDRLFLKREDEAKHKQRTRGGGNKKIMYEEGWAEFIRKRDAKLCAETLNGNIIGGKKGSFYHDDILNVKYLPGFKWADL 218
BLAST of Pre-rRNA-processing protein esf2 vs. UniProt/SwissProt
Match: sp|P53743|ESF2_YEAST (Pre-rRNA-processing protein ESF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ESF2 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 9.190e-17 Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 2 Query: 68 GVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVI--------YEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDI 358 GVV+ SSIP + A ++ I++ FG + R++L++ + Q+ K+ V YEEGW EF DAKL A+ LNG + K + I N+K+LP F W+D+ Sbjct: 114 GVVYFSSIPPYMKPAKMRQILTRFGEVDRLFLKKEDDQKYKQRVKGGGNKKNKYEEGWAEFIRKRDAKLCAETLNGNIIGGKKGTFYHDDILNVKYLPGFKWADL 218
BLAST of Pre-rRNA-processing protein esf2 vs. UniProt/SwissProt
Match: sp|Q6CSP8|ESF2_KLULA (Pre-rRNA-processing protein ESF2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=ESF2 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.426e-15 Identity = 37/105 (35.24%), Postives = 60/105 (57.14%), Query Frame = 2 Query: 68 GVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVV--------IYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDI 358 GVV+LS +P + A L+ I++ FG + R++L+R + ++ V ++EEGW EF +DAKL A LNG + K + + N+K+LP F W+D+ Sbjct: 91 GVVYLSRVPPYMKPAKLRQILTRFGEVDRLFLKREEEHKHQQRVKSGGNKKTMFEEGWAEFIRKKDAKLCASTLNGNIIGGKKGNFYHDDVMNVKYLPGFKWADL 195
BLAST of Pre-rRNA-processing protein esf2 vs. UniProt/SwissProt
Match: sp|Q75DA3|ESF2_ASHGO (Pre-rRNA-processing protein ESF2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=ESF2 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.656e-15 Identity = 59/198 (29.80%), Postives = 103/198 (52.02%), Query Frame = 2 Query: 68 GVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRR----SNTQRKK----KVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLR-DIIKSKKEGREVKGILNYSKFLNS-----RKPEDGNHTVLTHDINCSEEPPKKKVTKSQPKRKPYT--VSSVVHN 613 GVV+LS IP + A ++ I+S FG + R++L+R S+ QR K K V++ EGW EF +DAKL A+ LNG + K + + N+K+L F W+D+ E++ + +L+ +I ++ K E + SK LN+ K ED + +H + + + + +++P + +S+V+HN Sbjct: 116 GVVYLSKIPPYMKPAKMRQILSRFGDLDRLFLKREDEHSHRQRVKGGGNKKVMFREGWAEFIRKKDAKLCAETLNGNIIGGKKGNFYHDDVMNVKYLSGFKWADL-TEQIARENDVRQSKLQLEISQANKLNAEFIRNVEKSKMLNNIRAKKHKDEDSSERTESHLPVKQRKVTSNRASAPESQKQPASEKLSNVLHN 312
BLAST of Pre-rRNA-processing protein esf2 vs. UniProt/SwissProt
Match: sp|Q59YL9|ESF2_CANAL (Pre-rRNA-processing protein ESF2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=ESF2 PE=3 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 4.030e-13 Identity = 40/105 (38.10%), Postives = 55/105 (52.38%), Query Frame = 2 Query: 68 GVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVIY--------EEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDI 358 GV +LS +P + A L++++S FG I R++L+ + K V Y EGW+EF N DAKL A LNG K + I NIK+LP F W D+ Sbjct: 124 GVCYLSRVPPYMKPAKLRSVLSRFGEIDRLFLKPEDPSVYHKRVKYGGNKKKNFTEGWIEFVNKSDAKLCAATLNGNKLGGKKTSYYYDDIINIKYLPGFKWLDL 228
BLAST of Pre-rRNA-processing protein esf2 vs. TrEMBL
Match: A0A4S2MCU5 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_000936 PE=4 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 4.875e-29 Identity = 59/142 (41.55%), Postives = 86/142 (60.56%), Query Frame = 2 Query: 47 MEEVDIPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLRDIIKSKKEGREVKGILNYSKF 472 ME PG+++LS+IP G+NV+++ IMS FG +GRVYL T+R K Y+EGWVEF N + AK AK LN P SK+ PW G + NI++LPD +W+D+ E + + + RDI+ +K+ R+ L +K Sbjct: 6 MESATEPGIIYLSTIPTGMNVSMISDIMSQFGKLGRVYLVPKATKRGK-FRQYDEGWVEFVNKKYAKRVAKNLNCAEVPGSKRNPWFGELWNIRYLPDASWNDLFGAEREEQEQRRSAHDRDILIAKRHARQFTAALEATKL 146
BLAST of Pre-rRNA-processing protein esf2 vs. TrEMBL
Match: G7YTN6 (ESF2/ABP1 family protein OS=Clonorchis sinensis OX=79923 GN=esf2 PE=4 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 9.221e-29 Identity = 75/211 (35.55%), Postives = 110/211 (52.13%), Query Frame = 2 Query: 47 MEEVDIPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLRDIIKSKKEGREVKGILNYSKF-----------LNSRKPEDGNHTVLTHDINCSEEPPKKKVTKSQPKRKPYTVS---SVVHNPDIAKSLF 637 ME PG+++LS+IP G+NV+++ IMS FG +GRVYL T ++KK Y+EGWVEF N + AK AK LN P SK+ PW G + NI++LPD +W+D+ E + + + RDI+ +K+ R+ L +K SR+P D L +E +++ +S R P S S + N D SLF Sbjct: 6 MEPATEPGIIYLSTIPTGMNVSMISDIMSQFGKLGRVYLVPKAT-KQKKFRQYDEGWVEFVNKKYAKRVAKNLNCAEVPGSKRNPWFGELWNIRYLPDASWNDLFGAEREEQEQRRSAHDRDILIAKRHARQFTAALEATKLEKKLEVSKGKRFRSRQPID-----LNKRQRLTESEILERLARSH--RTPPEGSSSLSALSNKDFMTSLF 208
BLAST of Pre-rRNA-processing protein esf2 vs. TrEMBL
Match: A0A4S2MJH8 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_000936 PE=4 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 1.105e-28 Identity = 75/211 (35.55%), Postives = 109/211 (51.66%), Query Frame = 2 Query: 47 MEEVDIPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLRDIIKSKKEGREVKGILNYSKF-----------LNSRKPEDGNHTVLTHDINCSEEPPKKKVTKSQPKRKPYTVS---SVVHNPDIAKSLF 637 ME PG+++LS+IP G+NV+++ IMS FG +GRVYL T+R K Y+EGWVEF N + AK AK LN P SK+ PW G + NI++LPD +W+D+ E + + + RDI+ +K+ R+ L +K SR+P D L +E +++ +S R P S S + N D SLF Sbjct: 6 MESATEPGIIYLSTIPTGMNVSMISDIMSQFGKLGRVYLVPKATKRGK-FRQYDEGWVEFVNKKYAKRVAKNLNCAEVPGSKRNPWFGELWNIRYLPDASWNDLFGAEREEQEQRRSAHDRDILIAKRHARQFTAALEATKLEKKLEVSKGKRFRSRQPID-----LNKRQRLTESEILERLARSH--RTPPEGSSSLSALSNKDFMTSLF 208
BLAST of Pre-rRNA-processing protein esf2 vs. TrEMBL
Match: A0A075A7F3 (RRM domain-containing protein OS=Opisthorchis viverrini OX=6198 GN=T265_02226 PE=4 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 9.287e-28 Identity = 62/157 (39.49%), Postives = 90/157 (57.32%), Query Frame = 2 Query: 65 PGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLRDIIKSKKEGREVKGILNYSKF-----------LNSRKPEDGN 502 PGV++LS+IP G+NV+++ IMS FG +GRVYL T+R K Y+EGWVEF N + AK AK LN P SK+ PW G + NI++LPD +W+D+ E + + + RD++ +K+ R+ L +K SR+P D N Sbjct: 12 PGVIYLSTIPTGMNVSMISDIMSQFGKLGRVYLVPKTTKRGK-FRQYDEGWVEFVNKKYAKRVAKNLNCTEVPGSKRNPWFGELWNIRYLPDASWNDLFGAEREEQEQRRSAHDRDVLIAKRHARQFTAALEATKLEKKLEVSKGKRFRSRQPIDLN 167
BLAST of Pre-rRNA-processing protein esf2 vs. TrEMBL
Match: A0A183PNU7 (RRM domain-containing protein OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS16033 PE=4 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.832e-26 Identity = 73/209 (34.93%), Postives = 106/209 (50.72%), Query Frame = 2 Query: 53 EVDIPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKV---VIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLRDIIKSKKEGREVKGILNYSKFLNSRKPEDGNHTVLTHDINCSEEPPKKKVTKSQPKRKPYTVS----------SVVHNPDIAKSLFG 640 E D+PG+++LS+IP G+NV+++ IM FG IGRVYL +KKKV YEEGWVEF N + A+ AK LN SK+ PW G + NI+FL D +W+D+ E + + RDI+ +K + R+ L+ K K G + + ++K+T+ + K K S S V NP+ SLF Sbjct: 13 ESDVPGIIYLSTIPNGMNVSMISDIMQQFGKIGRVYL----VPKKKKVGKYRQYEEGWVEFLNSKIARRVAKRLNCTEVLGSKRNPWFGELWNIRFLKDTSWNDLFGAEREEEEQRRTAHDRDIVVAKHQARQFSAALDAKKLEKKMKQVKGKRFTERKPVRLNR---RQKLTEDEIKEKLAHSSRTPPEGCLGFSAVSNPEFMGSLFA 214
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Cavefish
Match: abt1 (activator of basal transcription 1 [Source:NCBI gene;Acc:103024745]) HSP 1 Score: 62.003 bits (149), Expect = 5.955e-11 Identity = 40/132 (30.30%), Postives = 74/132 (56.06%), Query Frame = 2 Query: 62 IPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLR---RSNTQRKKKV----VIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLR-DIIKSKKE 433 +PG+V+L IP L L+ ++ A+G IGR++L+ S T++K+K + EGWVEF++ AK A L+ N K+ + + ++K+L F W + +E + + ++R+R +I ++K+E Sbjct: 80 VPGIVYLGHIPPRLRPKNLRIMLGAYGEIGRIFLQPEDHSVTRKKRKAGNNGKNFIEGWVEFRDKRVAKRVAASLHNTPMTNRKRSQFISDLWSLKYLHRFQWCHL-SERLAYEQTVYHQRMRTEISQAKRE 210
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000251.1 (pep scaffold:Pmarinus_7.0:GL476635:327653:333482:1 gene:ENSPMAG00000000226.1 transcript:ENSPMAT00000000251.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 45.8246 bits (107), Expect = 1.319e-6 Identity = 28/78 (35.90%), Postives = 44/78 (56.41%), Query Frame = 2 Query: 203 YEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLR-DIIKSKKE 433 Y EGWVEF + AKLAA LN K+ + + ++K+L F W+ + +E + + N+RLR +I ++KKE Sbjct: 63 YTEGWVEFVDKRKAKLAAIMLNNNRITTRKRSRFYDDLWSLKYLHRFRWAHL-SERLAYERTVRNQRLRTEIAQAKKE 139
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Yeast
Match: ESF2 (Essential nucleolar protein involved in pre-18S rRNA processing; binds to RNA and stimulates ATPase activity of Dbp8; involved in assembly of the small subunit (SSU) processome [Source:SGD;Acc:S000005337]) HSP 1 Score: 81.6481 bits (200), Expect = 1.323e-18 Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 2 Query: 68 GVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVI--------YEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDI 358 GVV+ SSIP + A ++ I++ FG + R++L++ + Q+ K+ V YEEGW EF DAKL A+ LNG + K + I N+K+LP F W+D+ Sbjct: 114 GVVYFSSIPPYMKPAKMRQILTRFGEVDRLFLKKEDDQKYKQRVKGGGNKKNKYEEGWAEFIRKRDAKLCAETLNGNIIGGKKGTFYHDDILNVKYLPGFKWADL 218
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Nematostella
Match: EDO34990 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SMS8]) HSP 1 Score: 72.4034 bits (176), Expect = 9.263e-16 Identity = 42/133 (31.58%), Postives = 73/133 (54.89%), Query Frame = 2 Query: 65 PGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVV--------IYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLR-DIIKSKKEG 436 PG+V+LS +P + A ++ S FG +GR++L+ + +KK + EGWVEF++ AKL A+ LN KK + I N+K+LP F W + +E++ + + +R+R +I ++KK+ Sbjct: 16 PGIVYLSRLPPFMKPAKIRHTFSQFGEVGRLFLQPEDPSVRKKRKKFGGSGKKAFTEGWVEFKDKRIAKLVARSLNNTQIGGKKKSYYHDDIWNVKYLPKFLWGHL-SEKIAFEKAAREQRMRTEISQAKKDA 147
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Medaka
Match: abt1 (activator of basal transcription 1 [Source:NCBI gene;Acc:101157040]) HSP 1 Score: 64.6994 bits (156), Expect = 6.530e-12 Identity = 44/140 (31.43%), Postives = 70/140 (50.00%), Query Frame = 2 Query: 62 IPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQ--RKKK-----VVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLRDIIKSKKEGREVKGILN 460 +PG+V+L IP L L+ ++S +G IGR++L+ + Q RKKK + EGWVEF++ AK A L+ K+ + + IK+L F W+ + +E + + +RLR + K RE LN Sbjct: 60 VPGIVYLGHIPPRLRPKHLRNMLSVYGEIGRIFLQPEDHQVRRKKKKSGLRRCDFTEGWVEFRDKRVAKRVAASLHNTPMGTRKRQRFSSDLWCIKYLHRFQWTHL-SERLAYEQTVLQQRLRTEVSQAK--RETNFYLN 196
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Medaka
Match: abt1 (activator of basal transcription 1 [Source:NCBI gene;Acc:101157040]) HSP 1 Score: 64.6994 bits (156), Expect = 1.306e-11 Identity = 44/140 (31.43%), Postives = 70/140 (50.00%), Query Frame = 2 Query: 62 IPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQ--RKKK-----VVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLRDIIKSKKEGREVKGILN 460 +PG+V+L IP L L+ ++S +G IGR++L+ + Q RKKK + EGWVEF++ AK A L+ K+ + + IK+L F W+ + +E + + +RLR + K RE LN Sbjct: 191 VPGIVYLGHIPPRLRPKHLRNMLSVYGEIGRIFLQPEDHQVRRKKKKSGLRRCDFTEGWVEFRDKRVAKRVAASLHNTPMGTRKRQRFSSDLWCIKYLHRFQWTHL-SERLAYEQTVLQQRLRTEVSQAK--RETNFYLN 327
BLAST of Pre-rRNA-processing protein esf2 vs. Planmine SMEST
Match: SMESG000007887.1 (SMESG000007887.1) HSP 1 Score: 408.297 bits (1048), Expect = 1.117e-146 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 2 Query: 47 MEEVDIPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLRDIIKSKKEGREVKGILNYSKFLNSRKPEDGNHTVLTHDINCSEEPPKKKVTKSQPKRKPYTVSSVVHNPDIAKSLFGI 643 MEEVDIPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLRDIIKSKKEGREVKGILNYSKFLNSRKPEDGNHTVLTHDINCSEEPPKKKVTKSQPKRKPYTVSSVVHNPDIAKSLFGI Sbjct: 1 MEEVDIPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVVIYEEGWVEFQNLEDAKLAAKELNGVVFPNSKKMPWEGVICNIKFLPDFTWSDIHNEEVTIKAKSGNKRLRDIIKSKKEGREVKGILNYSKFLNSRKPEDGNHTVLTHDINCSEEPPKKKVTKSQPKRKPYTVSSVVHNPDIAKSLFGI 199 The following BLAST results are available for this feature:
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 3
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Pre-rRNA-processing protein esf2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Pre-rRNA-processing protein esf2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Pre-rRNA-processing protein esf2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of Pre-rRNA-processing protein esf2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30033469 ID=SMED30033469|Name=Pre-rRNA-processing protein esf2|organism=Schmidtea mediterranea sexual|type=transcript|length=764bpback to top protein sequence of SMED30033469-orf-1 >SMED30033469-orf-1 ID=SMED30033469-orf-1|Name=SMED30033469-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=200bp MEEVDIPGVVFLSSIPYGLNVALLQTIMSAFGPIGRVYLRRSNTQRKKKVback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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