SMED30033426

Overview


Name	SMED30033426
Smed ID	SMED30033426
Length (bp)	444

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30033426 (SMED30033426) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30033426 (SMED30033426) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30033426 (SMED30033426) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30033426 (SMED30033426) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30033426

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
protonephridia	SMED30033426	SMESG000028228.1	dd_Smed_v4_7872_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30033426	SMESG000028228.1	dd_Smed_v4_7872_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30033426	SMESG000028228.1	dd_Smed_v4_7872_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchyma	SMED30033426	SMESG000028228.1	dd_Smed_v4_7872_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30033426	SMESG000028228.1	dd_Smed_v4_7872_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30033426	SMESG000028228.1	dd_Smed_v4_7872_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Alignments

SMED30033426 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.006690:806..1298 -	2203

Homology

[Close]

BLAST of SMED30033426 vs. Ensembl Human
Match: HEATR5B (HEAT repeat containing 5B [Source:HGNC Symbol;Acc:HGNC:29273])

HSP 1 Score: 181.03 bits (458), Expect = 6.562e-53
Identity = 79/146 (54.11%), Postives = 114/146 (78.08%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE AL +++  KRPVFI+EWLRFLDKVL  ANK D+KEKQ+ +++ L   +  SPGP TR L+A+NL  L+S+GDT+++   ++ CND +++KDD+ +YLPT+LAA+A +G  Y K+GRM+G ++ ETV+ L+KSLK
Sbjct:    1 MELAHSLLLNEEALAQITEAKRPVFIFEWLRFLDKVLVAANKTDVKEKQKKLVEQLTGLISSSPGPPTRKLLAKNLAALYSIGDTFTVFQTLDKCNDIIRNKDDTAAYLPTKLAAVACVGAFYEKMGRMLGSAFPETVNNLLKSLK 146

[Close]

BLAST of SMED30033426 vs. Ensembl Human
Match: HEATR5A (HEAT repeat containing 5A [Source:HGNC Symbol;Acc:HGNC:20276])

HSP 1 Score: 170.629 bits (431), Expect = 2.856e-49
Identity = 75/146 (51.37%), Postives = 114/146 (78.08%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE A  +L   ++  FI+EWLR+L+K+L   ++ND++EKQ+ +++ LL+ L  SPGP TR L+A+NL  L+S+GDT+S+H AI+ CND ++SKDDSPSYLPT+LAA+  LG +Y KLGR++G ++ +TV  ++K++K
Sbjct:    1 MELAHSLLLNEEAYNQLGEVQKAEFIFEWLRYLEKLLLATSRNDVREKQKTLVEQLLSLLNSSPGPPTRKLLAKNLAILYSIGDTFSVHEAIDKCNDLIRSKDDSPSYLPTKLAAVVCLGSLYKKLGRILGNTFTDTVGNILKAMK 146

[Close]

BLAST of SMED30033426 vs. Ensembl Human
Match: HEATR5A (HEAT repeat containing 5A [Source:HGNC Symbol;Acc:HGNC:20276])

HSP 1 Score: 135.961 bits (341), Expect = 1.314e-41
Identity = 61/113 (53.98%), Postives = 89/113 (78.76%), Query Frame = -1

Query:  106 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRL 444
            MELA +L+LNE A  +L   ++  FI+EWLR+L+K+L   ++ND++EKQ+ +++ LL+ L  SPGP TR L+A+NL  L+S+GDT+S+H AI+ CND ++SKDDSPSYLPT+L
Sbjct:    1 MELAHSLLLNEEAYNQLGEVQKAEFIFEWLRYLEKLLLATSRNDVREKQKTLVEQLLSLLNSSPGPPTRKLLAKNLAILYSIGDTFSVHEAIDKCNDLIRSKDDSPSYLPTKL 113

[Close]

BLAST of SMED30033426 vs. Ensembl Human
Match: HEATR5A (HEAT repeat containing 5A [Source:HGNC Symbol;Acc:HGNC:20276])

HSP 1 Score: 94.3597 bits (233), Expect = 1.166e-25
Identity = 43/87 (49.43%), Postives = 66/87 (75.86%), Query Frame = -1

Query:  184 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYS 444
            MELA +L+LNE A  +L   ++  FI+EWLR+L+K+L   ++ND++EKQ+ +++ LL+ L  SPGP TR L+A+NL  L+S+GDT+S
Sbjct:    1 MELAHSLLLNEEAYNQLGEVQKAEFIFEWLRYLEKLLLATSRNDVREKQKTLVEQLLSLLNSSPGPPTRKLLAKNLAILYSIGDTFS 87

[Close]

BLAST of SMED30033426 vs. Ensembl Celegans
Match: soap-1 (Sorting Of Apical Proteins [Source:UniProtKB/TrEMBL;Acc:O01485])

HSP 1 Score: 133.265 bits (334), Expect = 1.143e-36
Identity = 62/142 (43.66%), Postives = 97/142 (68.31%), Query Frame = -1

Query:   22 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSV-GDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVL 444
            M+   +L+LNE AL      KRPVFIYEWLR+LD++L +  + D+K  Q+ + + L ++L    GP TR LIAR +G ++++ GD  SL+  +N+CND +K KD+SP  + ++LAA+A L  +Y  +GRM GRS E+T++++
Sbjct:    1 MDETHSLLLNEEALEACPEQKRPVFIYEWLRYLDRILPITQREDLKNVQKELQQQLESRLHTVVGPPTRKLIARCIGRVYALTGDIVSLNTLLNSCNDTLKVKDESPKAVQSKLAALACLSAVYDSMGRMAGRSIEDTLAIV 142

[Close]

BLAST of SMED30033426 vs. Ensembl Fly
Match: CG2747 (gene:FBgn0037541 transcript:FBtr0081817)

HSP 1 Score: 176.022 bits (445), Expect = 1.804e-51
Identity = 82/146 (56.16%), Postives = 109/146 (74.66%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA  LILNE AL +L   KRPVF  EWLR+L+K L + +K +IK  Q+ +++ L  +++ +PGP  R LIA  L TLFSVGDT+ L   +N CND +K+KDDSPSYLPT+LAAI  LG +Y KLGRM+GR+YE+TV +LI++L+
Sbjct:    1 MELAHTLILNEDALKQLPEHKRPVFELEWLRYLEKALPLVSKAEIKASQKKLVQQLSERIQGAPGPPIRKLIASALATLFSVGDTFMLFDTVNACNDILKNKDDSPSYLPTKLAAICVLGSMYEKLGRMMGRTYEDTVQILIRTLR 146

[Close]

BLAST of SMED30033426 vs. Ensembl Fly
Match: CG2747 (gene:FBgn0037541 transcript:FBtr0335229)

HSP 1 Score: 176.022 bits (445), Expect = 1.823e-51
Identity = 82/146 (56.16%), Postives = 109/146 (74.66%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA  LILNE AL +L   KRPVF  EWLR+L+K L + +K +IK  Q+ +++ L  +++ +PGP  R LIA  L TLFSVGDT+ L   +N CND +K+KDDSPSYLPT+LAAI  LG +Y KLGRM+GR+YE+TV +LI++L+
Sbjct:   49 MELAHTLILNEDALKQLPEHKRPVFELEWLRYLEKALPLVSKAEIKASQKKLVQQLSERIQGAPGPPIRKLIASALATLFSVGDTFMLFDTVNACNDILKNKDDSPSYLPTKLAAICVLGSMYEKLGRMMGRTYEDTVQILIRTLR 194

[Close]

BLAST of SMED30033426 vs. Ensembl Fly
Match: CG2747 (gene:FBgn0037541 transcript:FBtr0300916)

HSP 1 Score: 176.022 bits (445), Expect = 1.859e-51
Identity = 82/146 (56.16%), Postives = 109/146 (74.66%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA  LILNE AL +L   KRPVF  EWLR+L+K L + +K +IK  Q+ +++ L  +++ +PGP  R LIA  L TLFSVGDT+ L   +N CND +K+KDDSPSYLPT+LAAI  LG +Y KLGRM+GR+YE+TV +LI++L+
Sbjct:   49 MELAHTLILNEDALKQLPEHKRPVFELEWLRYLEKALPLVSKAEIKASQKKLVQQLSERIQGAPGPPIRKLIASALATLFSVGDTFMLFDTVNACNDILKNKDDSPSYLPTKLAAICVLGSMYEKLGRMMGRTYEDTVQILIRTLR 194

[Close]

BLAST of SMED30033426 vs. Ensembl Fly
Match: CG2747 (gene:FBgn0037541 transcript:FBtr0081818)

HSP 1 Score: 176.022 bits (445), Expect = 1.877e-51
Identity = 82/146 (56.16%), Postives = 109/146 (74.66%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA  LILNE AL +L   KRPVF  EWLR+L+K L + +K +IK  Q+ +++ L  +++ +PGP  R LIA  L TLFSVGDT+ L   +N CND +K+KDDSPSYLPT+LAAI  LG +Y KLGRM+GR+YE+TV +LI++L+
Sbjct:   49 MELAHTLILNEDALKQLPEHKRPVFELEWLRYLEKALPLVSKAEIKASQKKLVQQLSERIQGAPGPPIRKLIASALATLFSVGDTFMLFDTVNACNDILKNKDDSPSYLPTKLAAICVLGSMYEKLGRMMGRTYEDTVQILIRTLR 194

[Close]

BLAST of SMED30033426 vs. Ensembl Fly
Match: CG2747 (gene:FBgn0037541 transcript:FBtr0335230)

HSP 1 Score: 176.022 bits (445), Expect = 1.914e-51
Identity = 82/146 (56.16%), Postives = 109/146 (74.66%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA  LILNE AL +L   KRPVF  EWLR+L+K L + +K +IK  Q+ +++ L  +++ +PGP  R LIA  L TLFSVGDT+ L   +N CND +K+KDDSPSYLPT+LAAI  LG +Y KLGRM+GR+YE+TV +LI++L+
Sbjct:   49 MELAHTLILNEDALKQLPEHKRPVFELEWLRYLEKALPLVSKAEIKASQKKLVQQLSERIQGAPGPPIRKLIASALATLFSVGDTFMLFDTVNACNDILKNKDDSPSYLPTKLAAICVLGSMYEKLGRMMGRTYEDTVQILIRTLR 194

[Close]

BLAST of SMED30033426 vs. Ensembl Zebrafish
Match: heatr5b (HEAT repeat containing 5B [Source:ZFIN;Acc:ZDB-GENE-130530-676])

HSP 1 Score: 171.785 bits (434), Expect = 5.634e-50
Identity = 77/146 (52.74%), Postives = 112/146 (76.71%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE AL  ++  KR VFI+EWLRFLDKVL  ANK D+KEKQ+ +++ L   +  SPGP TR L+A+NL  L+S+GDT+++   ++ CND +KSKDD+ +YLP++LAA+A +G  Y ++GRM+G S+ ET++ L+K+LK
Sbjct:    1 MELAHSLLLNEEALSHITEAKRAVFIFEWLRFLDKVLIAANKVDVKEKQKKLVEQLTGLISSSPGPPTRKLLAKNLAVLYSIGDTFTVFQTLDKCNDIIKSKDDTAAYLPSKLAAVACVGAFYERMGRMLGSSFPETINNLLKALK 146

[Close]

BLAST of SMED30033426 vs. Ensembl Zebrafish
Match: heatr5b (HEAT repeat containing 5B [Source:ZFIN;Acc:ZDB-GENE-130530-676])

HSP 1 Score: 171.014 bits (432), Expect = 1.175e-49
Identity = 77/146 (52.74%), Postives = 112/146 (76.71%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE AL  ++  KR VFI+EWLRFLDKVL  ANK D+KEKQ+ +++ L   +  SPGP TR L+A+NL  L+S+GDT+++   ++ CND +KSKDD+ +YLP++LAA+A +G  Y ++GRM+G S+ ET++ L+K+LK
Sbjct:    1 MELAHSLLLNEEALSHITEAKRAVFIFEWLRFLDKVLIAANKVDVKEKQKKLVEQLTGLISSSPGPPTRKLLAKNLAVLYSIGDTFTVFQTLDKCNDIIKSKDDTAAYLPSKLAAVACVGAFYERMGRMLGSSFPETINNLLKALK 146

[Close]

BLAST of SMED30033426 vs. Ensembl Zebrafish
Match: BX465838.3 (HEAT repeat containing 5a [Source:NCBI gene;Acc:368728])

HSP 1 Score: 147.902 bits (372), Expect = 1.488e-41
Identity = 67/146 (45.89%), Postives = 105/146 (71.92%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            ME A +L+LNE A  +L   +R  F++EWLRFL K+L   ++ D+K+KQ+ +++ L   L  SPGP TR L+A+ L  ++ VGD+ +  L ++ CND ++SKDDSPS+LPTRLAA+A LG +Y +LGR++  S++ET + L+K+++
Sbjct:    1 MEQAHSLLLNEEACSQLPEHQRAEFVFEWLRFLKKLLPATDRADVKQKQKRLVEQLTTVLTSSPGPPTRLLLAQCLALVYRVGDSLTSSLTVDRCNDIIRSKDDSPSFLPTRLAAVACLGALYEQLGRLLINSFKETTTNLLKAMR 146

[Close]

BLAST of SMED30033426 vs. Ensembl Zebrafish
Match: heatr5a (HEAT repeat containing 5a [Source:NCBI gene;Acc:368728])

HSP 1 Score: 147.902 bits (372), Expect = 1.562e-41
Identity = 67/146 (45.89%), Postives = 105/146 (71.92%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            ME A +L+LNE A  +L   +R  F++EWLRFL K+L   ++ D+K+KQ+ +++ L   L  SPGP TR L+A+ L  ++ VGD+ +  L ++ CND ++SKDDSPS+LPTRLAA+A LG +Y +LGR++  S++ET + L+K+++
Sbjct:    1 MEQAHSLLLNEEACSQLPEHQRAEFVFEWLRFLKKLLPATDRADVKQKQKRLVEQLTTVLTSSPGPPTRLLLAQCLALVYRVGDSLTSSLTVDRCNDIIRSKDDSPSFLPTRLAAVACLGALYEQLGRLLINSFKETTTNLLKAMR 146

[Close]

BLAST of SMED30033426 vs. Ensembl Zebrafish
Match: heatr5a (HEAT repeat containing 5a [Source:NCBI gene;Acc:368728])

HSP 1 Score: 147.902 bits (372), Expect = 1.576e-41
Identity = 67/146 (45.89%), Postives = 105/146 (71.92%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            ME A +L+LNE A  +L   +R  F++EWLRFL K+L   ++ D+K+KQ+ +++ L   L  SPGP TR L+A+ L  ++ VGD+ +  L ++ CND ++SKDDSPS+LPTRLAA+A LG +Y +LGR++  S++ET + L+K+++
Sbjct:    1 MEQAHSLLLNEEACSQLPEHQRAEFVFEWLRFLKKLLPATDRADVKQKQKRLVEQLTTVLTSSPGPPTRLLLAQCLALVYRVGDSLTSSLTVDRCNDIIRSKDDSPSFLPTRLAAVACLGALYEQLGRLLINSFKETTTNLLKAMR 146

[Close]

BLAST of SMED30033426 vs. Ensembl Xenopus
Match: heatr5b (HEAT repeat containing 5B [Source:NCBI gene;Acc:100036680])

HSP 1 Score: 177.563 bits (449), Expect = 9.573e-52
Identity = 79/146 (54.11%), Postives = 113/146 (77.40%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+L E AL +++  K+ VFI+EWLRFLDKVL  ANK DIKE Q+ +++ L   +  SPGP TR L+A+NL TL+S+GDT+++   ++ CN+ +K+KDD+P+YLPT+LAA+A +G  Y K+GRM+G S+ ETV+ L+KSLK
Sbjct:    1 MELAHSLLLKEDALAQITEAKKSVFIFEWLRFLDKVLIAANKTDIKENQKKLVEQLTGLISSSPGPPTRKLLAKNLATLYSIGDTFTVFQTLDKCNEMIKNKDDTPAYLPTKLAAVACVGAFYEKMGRMLGSSFPETVNNLLKSLK 146

[Close]

BLAST of SMED30033426 vs. Ensembl Xenopus
Match: heatr5b (HEAT repeat containing 5B [Source:NCBI gene;Acc:100036680])

HSP 1 Score: 177.178 bits (448), Expect = 1.107e-51
Identity = 79/146 (54.11%), Postives = 113/146 (77.40%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+L E AL +++  K+ VFI+EWLRFLDKVL  ANK DIKE Q+ +++ L   +  SPGP TR L+A+NL TL+S+GDT+++   ++ CN+ +K+KDD+P+YLPT+LAA+A +G  Y K+GRM+G S+ ETV+ L+KSLK
Sbjct:    1 MELAHSLLLKEDALAQITEAKKSVFIFEWLRFLDKVLIAANKTDIKENQKKLVEQLTGLISSSPGPPTRKLLAKNLATLYSIGDTFTVFQTLDKCNEMIKNKDDTPAYLPTKLAAVACVGAFYEKMGRMLGSSFPETVNNLLKSLK 146

[Close]

BLAST of SMED30033426 vs. Ensembl Xenopus
Match: heatr5b (HEAT repeat containing 5B [Source:NCBI gene;Acc:100036680])

HSP 1 Score: 177.178 bits (448), Expect = 1.186e-51
Identity = 79/146 (54.11%), Postives = 113/146 (77.40%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+L E AL +++  K+ VFI+EWLRFLDKVL  ANK DIKE Q+ +++ L   +  SPGP TR L+A+NL TL+S+GDT+++   ++ CN+ +K+KDD+P+YLPT+LAA+A +G  Y K+GRM+G S+ ETV+ L+KSLK
Sbjct:    1 MELAHSLLLKEDALAQITEAKKSVFIFEWLRFLDKVLIAANKTDIKENQKKLVEQLTGLISSSPGPPTRKLLAKNLATLYSIGDTFTVFQTLDKCNEMIKNKDDTPAYLPTKLAAVACVGAFYEKMGRMLGSSFPETVNNLLKSLK 146

[Close]

BLAST of SMED30033426 vs. Ensembl Xenopus
Match: heatr5b (HEAT repeat containing 5B [Source:NCBI gene;Acc:100036680])

HSP 1 Score: 168.703 bits (426), Expect = 1.149e-48
Identity = 79/157 (50.32%), Postives = 113/157 (71.97%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANK-----------NDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+L E AL +++  K+ VFI+EWLRFLDKVL  ANK            DIKE Q+ +++ L   +  SPGP TR L+A+NL TL+S+GDT+++   ++ CN+ +K+KDD+P+YLPT+LAA+A +G  Y K+GRM+G S+ ETV+ L+KSLK
Sbjct:    1 MELAHSLLLKEDALAQITEAKKSVFIFEWLRFLDKVLIAANKVYFNLLKFKSQTDIKENQKKLVEQLTGLISSSPGPPTRKLLAKNLATLYSIGDTFTVFQTLDKCNEMIKNKDDTPAYLPTKLAAVACVGAFYEKMGRMLGSSFPETVNNLLKSLK 157

[Close]

BLAST of SMED30033426 vs. Ensembl Xenopus
Match: heatr5b (HEAT repeat containing 5B [Source:NCBI gene;Acc:100036680])

HSP 1 Score: 166.392 bits (420), Expect = 7.750e-48
Identity = 76/146 (52.05%), Postives = 110/146 (75.34%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+L E AL +++  K+ VFI+EWLRFLDKVL      DIKE Q+ +++ L   +  SPGP TR L+A+NL TL+S+GDT+++   ++ CN+ +K+KDD+P+YLPT+LAA+A +G  Y K+GRM+G S+ ETV+ L+KSLK
Sbjct:    1 MELAHSLLLKEDALAQITEAKKSVFIFEWLRFLDKVLIA---TDIKENQKKLVEQLTGLISSSPGPPTRKLLAKNLATLYSIGDTFTVFQTLDKCNEMIKNKDDTPAYLPTKLAAVACVGAFYEKMGRMLGSSFPETVNNLLKSLK 143

[Close]

BLAST of SMED30033426 vs. Ensembl Mouse
Match: Heatr5b (HEAT repeat containing 5B [Source:MGI Symbol;Acc:MGI:2444098])

HSP 1 Score: 183.726 bits (465), Expect = 4.997e-54
Identity = 81/146 (55.48%), Postives = 114/146 (78.08%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE AL +++  KRPVFI+EWLRFLDKVL  ANK D+KEKQ+ +++ L   +  SPGP TR L+A+NL  L+S+GDTY++   ++ CND ++SKDD+ +YLPT+LAA+A +G  Y K+GRM+G ++ ETV+ L+KSLK
Sbjct:    1 MELAHSLLLNEEALAQITEAKRPVFIFEWLRFLDKVLVAANKTDVKEKQKKLVEQLTGLISSSPGPPTRKLLAKNLAALYSIGDTYTVFQTLDKCNDIIRSKDDTAAYLPTKLAAVACVGAFYEKMGRMLGSAFPETVNNLLKSLK 146

[Close]

BLAST of SMED30033426 vs. Ensembl Mouse
Match: Heatr5a (HEAT repeat containing 5A [Source:MGI Symbol;Acc:MGI:2444133])

HSP 1 Score: 157.532 bits (397), Expect = 6.406e-45
Identity = 72/146 (49.32%), Postives = 108/146 (73.97%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE A  +L   ++  FI+EWLR+L+K+L   N+ D++EKQ+ ++  LL+ L  SPGP TR L+A++L  L+SVGDT S++  I+ CND ++SKDDSPSYLPT+LAA+  LG +Y KLGR++   + +TV  ++K++K
Sbjct:    1 MELAHSLLLNEEASNQLGAVQKAEFIFEWLRYLEKLLLATNREDVREKQKTLVGQLLSLLNSSPGPPTRKLLAQDLAILYSVGDTVSVYETIDKCNDLIRSKDDSPSYLPTKLAAVVCLGSLYKKLGRILANGFTDTVVNILKAMK 146

[Close]

BLAST of SMED30033426 vs. UniProt/SwissProt
Match: sp|Q8C547|HTR5B_MOUSE (HEAT repeat-containing protein 5B OS=Mus musculus OX=10090 GN=Heatr5b PE=1 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 3.495e-53
Identity = 81/146 (55.48%), Postives = 114/146 (78.08%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE AL +++  KRPVFI+EWLRFLDKVL  ANK D+KEKQ+ +++ L   +  SPGP TR L+A+NL  L+S+GDTY++   ++ CND ++SKDD+ +YLPT+LAA+A +G  Y K+GRM+G ++ ETV+ L+KSLK
Sbjct:    1 MELAHSLLLNEEALAQITEAKRPVFIFEWLRFLDKVLVAANKTDVKEKQKKLVEQLTGLISSSPGPPTRKLLAKNLAALYSIGDTYTVFQTLDKCNDIIRSKDDTAAYLPTKLAAVACVGAFYEKMGRMLGSAFPETVNNLLKSLK 146

[Close]

BLAST of SMED30033426 vs. UniProt/SwissProt
Match: sp|Q9P2D3|HTR5B_HUMAN (HEAT repeat-containing protein 5B OS=Homo sapiens OX=9606 GN=HEATR5B PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 3.151e-52
Identity = 79/146 (54.11%), Postives = 114/146 (78.08%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE AL +++  KRPVFI+EWLRFLDKVL  ANK D+KEKQ+ +++ L   +  SPGP TR L+A+NL  L+S+GDT+++   ++ CND +++KDD+ +YLPT+LAA+A +G  Y K+GRM+G ++ ETV+ L+KSLK
Sbjct:    1 MELAHSLLLNEEALAQITEAKRPVFIFEWLRFLDKVLVAANKTDVKEKQKKLVEQLTGLISSSPGPPTRKLLAKNLAALYSIGDTFTVFQTLDKCNDIIRNKDDTAAYLPTKLAAVACVGAFYEKMGRMLGSAFPETVNNLLKSLK 146

[Close]

BLAST of SMED30033426 vs. UniProt/SwissProt
Match: sp|A1A5F2|HTR5B_XENTR (HEAT repeat-containing protein 5B OS=Xenopus tropicalis OX=8364 GN=heatr5b PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.284e-51
Identity = 79/146 (54.11%), Postives = 113/146 (77.40%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+L E AL +++  K+ VFI+EWLRFLDKVL  ANK DIKE Q+ +++ L   +  SPGP TR L+A+NL TL+S+GDT+++   ++ CN+ +K+KDD+P+YLPT+LAA+A +G  Y K+GRM+G S+ ETV+ L+KSLK
Sbjct:    1 MELAHSLLLKEDALAQITEAKKSVFIFEWLRFLDKVLIAANKTDIKENQKKLVEQLTGLISSSPGPPTRKLLAKNLATLYSIGDTFTVFQTLDKCNEMIKNKDDTPAYLPTKLAAVACVGAFYEKMGRMLGSSFPETVNNLLKSLK 146

[Close]

BLAST of SMED30033426 vs. UniProt/SwissProt
Match: sp|Q86XA9|HTR5A_HUMAN (HEAT repeat-containing protein 5A OS=Homo sapiens OX=9606 GN=HEATR5A PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 1.440e-48
Identity = 75/146 (51.37%), Postives = 114/146 (78.08%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE A  +L   ++  FI+EWLR+L+K+L   ++ND++EKQ+ +++ LL+ L  SPGP TR L+A+NL  L+S+GDT+S+H AI+ CND ++SKDDSPSYLPT+LAA+  LG +Y KLGR++G ++ +TV  ++K++K
Sbjct:    1 MELAHSLLLNEEAYNQLGEVQKAEFIFEWLRYLEKLLLATSRNDVREKQKTLVEQLLSLLNSSPGPPTRKLLAKNLAILYSIGDTFSVHEAIDKCNDLIRSKDDSPSYLPTKLAAVVCLGSLYKKLGRILGNTFTDTVGNILKAMK 146

[Close]

BLAST of SMED30033426 vs. UniProt/SwissProt
Match: sp|Q5PRF0|HTR5A_MOUSE (HEAT repeat-containing protein 5A OS=Mus musculus OX=10090 GN=Heatr5a PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.481e-44
Identity = 72/146 (49.32%), Postives = 108/146 (73.97%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE A  +L   ++  FI+EWLR+L+K+L   N+ D++EKQ+ ++  LL+ L  SPGP TR L+A++L  L+SVGDT S++  I+ CND ++SKDDSPSYLPT+LAA+  LG +Y KLGR++   + +TV  ++K++K
Sbjct:    1 MELAHSLLLNEEASNQLGAVQKAEFIFEWLRYLEKLLLATNREDVREKQKTLVGQLLSLLNSSPGPPTRKLLAQDLAILYSVGDTVSVYETIDKCNDLIRSKDDSPSYLPTKLAAVVCLGSLYKKLGRILANGFTDTVVNILKAMK 146

[Close]

BLAST of SMED30033426 vs. TrEMBL
Match: A0A0L8FI91 (Uncharacterized protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22019109mg PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.771e-65
Identity = 94/146 (64.38%), Postives = 117/146 (80.14%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE A  K+   KRPVF++EWLRFLDKVL  A K+DIKE Q+ +++ L NQ+ +SPGP TR LIAR L TLFSVGDT+ L   IN CND +K+KDDSPSYLPTRL+A+A +G +Y KLGRMVGRSYE+T+ +LIKSL+
Sbjct:    7 MELAHSLLLNEEAFKKIQESKRPVFVFEWLRFLDKVLGAAQKSDIKESQKKLVEQLTNQISESPGPPTRKLIARCLATLFSVGDTFDLFETINKCNDIIKNKDDSPSYLPTRLSAVACIGAMYEKLGRMVGRSYEDTIQILIKSLR 152

[Close]

BLAST of SMED30033426 vs. TrEMBL
Match: V5I7R8 (HEAT repeat-containing protein 5B (Fragment) OS=Anoplophora glabripennis OX=217634 GN=HTR5B PE=4 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 5.529e-62
Identity = 90/146 (61.64%), Postives = 117/146 (80.14%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MEL+ +L LNE AL ++   KRPVFI+EWLR++DKVL  A KNDIK  Q+ +++ L+N++++SPGP TR LIAR L TLFSVGDT+ L   +N CND +K+KDDSPS+LPTRLAAI  +G +Y KLGRM+GRSYEETV +LI+SL+
Sbjct:    1 MELSHSLTLNEEALSQIGEAKRPVFIFEWLRYVDKVLVAAQKNDIKGCQKQLVQQLMNRIQESPGPPTRKLIARCLATLFSVGDTFLLFDTVNKCNDILKNKDDSPSFLPTRLAAICCVGTMYEKLGRMMGRSYEETVHILIRSLR 146

[Close]

BLAST of SMED30033426 vs. TrEMBL
Match: A0A0T6B9F0 (HEAT domain-containing protein (Fragment) OS=Oryctes borbonicus OX=1629725 GN=AMK59_1537 PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.743e-62
Identity = 93/146 (63.70%), Postives = 116/146 (79.45%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MEL+ +L LNE AL ++   KRPVFI+EWLRFLDKVL  A KNDIK  Q+ +++ L+N +++SPGP TR LIAR L TLFSVGDT+ L   +N CND +K+KDDSPS+LPTRLAAI  +G +Y KLGRM+GRSYEETV +LI+SLK
Sbjct:   16 MELSHSLTLNEEALAQIPPPKRPVFIFEWLRFLDKVLVAAQKNDIKGCQKKLVEQLMNHIQESPGPPTRKLIARCLATLFSVGDTFLLFDTVNKCNDILKNKDDSPSFLPTRLAAICCVGTMYEKLGRMMGRSYEETVQILIRSLK 161

[Close]

BLAST of SMED30033426 vs. TrEMBL
Match: A0A210PI49 (HEAT repeat-containing protein 5B OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT10005 PE=4 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 6.665e-60
Identity = 98/146 (67.12%), Postives = 119/146 (81.51%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE AL K+  +KRPVF++EWLRFLDKVL  A K+DIKEKQ+ +++ L NQ+ +SPGP +R L+ARNL  LFSVGDT+ L   IN CND +K+KDDSPSYLPTRLAAIA LG +Y KLGRM GRSYE+TV +LIKSLK
Sbjct:   12 MELAHSLLLNEEALKKIPENKRPVFVFEWLRFLDKVLIAAQKSDIKEKQKKLVEQLTNQISESPGPPSRKLLARNLAILFSVGDTFELFNTINKCNDIIKNKDDSPSYLPTRLAAIACLGAMYEKLGRMTGRSYEDTVQILIKSLK 157

[Close]

BLAST of SMED30033426 vs. TrEMBL
Match: K1PBL7 (HEAT repeat-containing protein 5B OS=Crassostrea gigas OX=29159 GN=CGI_10010720 PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 8.403e-60
Identity = 96/146 (65.75%), Postives = 120/146 (82.19%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE AL K+ ++K+PVF++EWLRFLDKVL  A K+DIKEKQ+ ++  L +Q+ +SPGP TR L+ARNL T+FSVGDT+ L   +N CND +K++DDSPSYLPTRLAAIA LG +Y KLGRM GRSYEETV +LIKSLK
Sbjct:    1 MELAHSLLLNEEALSKIPDNKKPVFVFEWLRFLDKVLVAAQKSDIKEKQKQLVAQLTSQISESPGPPTRKLLARNLATIFSVGDTFDLFETLNKCNDIIKNRDDSPSYLPTRLAAIACLGAMYEKLGRMTGRSYEETVQILIKSLK 146

[Close]

BLAST of SMED30033426 vs. Ensembl Cavefish
Match: heatr5b (HEAT repeat containing 5B [Source:ZFIN;Acc:ZDB-GENE-130530-676])

HSP 1 Score: 181.03 bits (458), Expect = 3.338e-53
Identity = 78/146 (53.42%), Postives = 116/146 (79.45%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE AL +++  KRPVFI+EWLRFL+KVL  ANK D+KEKQ+ +++ L   +  +PGP TR L+A+NL TL+S+GDT+++   ++ CND +K+KDD+P+YLPT+LAA+A +G  Y ++GRM+G S+ ET++ L+K+LK
Sbjct:    1 MELAHSLLLNEDALAQITEAKRPVFIFEWLRFLNKVLVAANKVDVKEKQKKLVEQLTGLISSNPGPPTRKLLAKNLATLYSIGDTFTVFQTLDKCNDIIKNKDDTPAYLPTKLAAVACVGAFYERMGRMLGSSFPETINNLLKALK 146

[Close]

BLAST of SMED30033426 vs. Ensembl Cavefish
Match: heatr5a (HEAT repeat containing 5a [Source:NCBI gene;Acc:368728])

HSP 1 Score: 154.066 bits (388), Expect = 7.720e-44
Identity = 73/146 (50.00%), Postives = 107/146 (73.29%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            ME A +L+LNE A  +L   +R  FI+EWLRFL K+L  A++ D+++ Q+ + + L   L  SPGPSTR L+A+ L  L+ VGDT++  L ++ CND ++SKDDSPS+LPTRLAA+A LG +Y +LGR++  S++ETV+ L+K+LK
Sbjct:    1 MEQAHSLLLNEDACGRLGEHQRAEFIFEWLRFLKKLLPAADRADVRKNQKQLAEQLTAILTGSPGPSTRWLLAQCLALLYRVGDTFTSSLTVDRCNDIIRSKDDSPSFLPTRLAAVACLGAMYEQLGRLLISSFKETVANLLKALK 146

[Close]

BLAST of SMED30033426 vs. Ensembl Sea Lamprey
Match: heatr5b (HEAT repeat containing 5B [Source:ZFIN;Acc:ZDB-GENE-130530-676])

HSP 1 Score: 174.866 bits (442), Expect = 8.929e-52
Identity = 75/146 (51.37%), Postives = 114/146 (78.08%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE AL ++++ K+P+F++EWLRFLD  L  ANK D ++ Q  +++ L N + ++PGP TR LIA++L TL+S+GDT+S+   I+ CN+ ++SKDDSPSYLPT+L+A+A +G +Y KLGRM+G S+ +T+  LIK++K
Sbjct:    1 MELAHSLLLNEEALAQVTDAKKPIFVFEWLRFLDIYLATANKIDTRQNQNRLVEQLTNLMSEAPGPPTRRLIAKSLSTLYSIGDTFSVFQTIDKCNEIIRSKDDSPSYLPTKLSAVACIGALYEKLGRMLGSSFPDTIGNLIKAVK 146

[Close]

BLAST of SMED30033426 vs. Ensembl Medaka
Match: heatr5b (HEAT repeat containing 5B [Source:NCBI gene;Acc:101168395])

HSP 1 Score: 183.726 bits (465), Expect = 3.610e-54
Identity = 80/146 (54.79%), Postives = 116/146 (79.45%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE AL +++  KRPVFI+EWLRFLDKVL  ANK D+KEKQ+ +++ L   +  +PGP TR L+A+NL TL+S+GDT+++   ++ CN+ +KSKDD+P+YLPT+LAA+A LG  Y K+GRM+G S+ +T++ L+K+LK
Sbjct:    1 MELAHSLLLNEDALAQITEAKRPVFIFEWLRFLDKVLVAANKVDVKEKQKKLVEQLTGLISSAPGPPTRKLLAKNLATLYSIGDTFTVFQTLDKCNEIIKSKDDTPTYLPTKLAAVACLGAFYEKMGRMLGSSFPDTINNLLKALK 146

[Close]

BLAST of SMED30033426 vs. Ensembl Medaka
Match: heatr5b (HEAT repeat containing 5B [Source:NCBI gene;Acc:101168395])

HSP 1 Score: 183.341 bits (464), Expect = 4.427e-54
Identity = 80/146 (54.79%), Postives = 116/146 (79.45%), Query Frame = -1

Query:    7 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLK 444
            MELA +L+LNE AL +++  KRPVFI+EWLRFLDKVL  ANK D+KEKQ+ +++ L   +  +PGP TR L+A+NL TL+S+GDT+++   ++ CN+ +KSKDD+P+YLPT+LAA+A LG  Y K+GRM+G S+ +T++ L+K+LK
Sbjct:   64 MELAHSLLLNEDALAQITEAKRPVFIFEWLRFLDKVLVAANKVDVKEKQKKLVEQLTGLISSAPGPPTRKLLAKNLATLYSIGDTFTVFQTLDKCNEIIKSKDDTPTYLPTKLAAVACLGAFYEKMGRMLGSSFPDTINNLLKALK 209

[Close]

BLAST of SMED30033426 vs. Planmine SMEST
Match: SMESG000028228.1 (SMESG000028228.1)

HSP 1 Score: 303.523 bits (776), Expect = 3.329e-96
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = -1

Query:    4 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLKQ 444
            MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLKQ
Sbjct:    1 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLKQ 147

[Close]

BLAST of SMED30033426 vs. Planmine SMEST
Match: SMESG000028228.1 (SMESG000028228.1)

HSP 1 Score: 303.523 bits (776), Expect = 3.330e-96
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = -1

Query:    4 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLKQ 444
            MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLKQ
Sbjct:    1 MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQEHILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVKSKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLKQ 147

The following BLAST results are available for this feature:

BLAST of SMED30033426 vs. Ensembl Human
BLAST of SMED30033426 vs. Ensembl Celegans
BLAST of SMED30033426 vs. Ensembl Fly
BLAST of SMED30033426 vs. Ensembl Zebrafish
BLAST of SMED30033426 vs. Ensembl Xenopus
BLAST of SMED30033426 vs. Ensembl Mouse
BLAST of SMED30033426 vs. UniProt/SwissProt
BLAST of SMED30033426 vs. TrEMBL
BLAST of SMED30033426 vs. Ensembl Cavefish
BLAST of SMED30033426 vs. Ensembl Sea Lamprey
BLAST of SMED30033426 vs. Ensembl Yeast
BLAST of SMED30033426 vs. Ensembl Nematostella
BLAST of SMED30033426 vs. Ensembl Medaka
BLAST of SMED30033426 vs. Planmine SMEST

BLAST of SMED30033426 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 4


Match Name	E-value	Identity	Description
HEATR5B	6.562e-53	54.11	HEAT repeat containing 5B [Source:HGNC Symbol;Acc:...	[more]
HEATR5A	2.856e-49	51.37	HEAT repeat containing 5A [Source:HGNC Symbol;Acc:...	[more]
HEATR5A	1.314e-41	53.98	HEAT repeat containing 5A [Source:HGNC Symbol;Acc:...	[more]
HEATR5A	1.166e-25	49.43	HEAT repeat containing 5A [Source:HGNC Symbol;Acc:...	[more]

BLAST of SMED30033426 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1


Match Name	E-value	Identity	Description
soap-1	1.143e-36	43.66	Sorting Of Apical Proteins [Source:UniProtKB/TrEM...	[more]

BLAST of SMED30033426 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
CG2747	1.804e-51	56.16	gene:FBgn0037541 transcript:FBtr0081817	[more]
CG2747	1.823e-51	56.16	gene:FBgn0037541 transcript:FBtr0335229	[more]
CG2747	1.859e-51	56.16	gene:FBgn0037541 transcript:FBtr0300916	[more]
CG2747	1.877e-51	56.16	gene:FBgn0037541 transcript:FBtr0081818	[more]
CG2747	1.914e-51	56.16	gene:FBgn0037541 transcript:FBtr0335230	[more]

BLAST of SMED30033426 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
heatr5b	5.634e-50	52.74	HEAT repeat containing 5B [Source:ZFIN;Acc:ZDB-GEN...	[more]
heatr5b	1.175e-49	52.74	HEAT repeat containing 5B [Source:ZFIN;Acc:ZDB-GEN...	[more]
BX465838.3	1.488e-41	45.89	HEAT repeat containing 5a [Source:NCBI gene;Acc:36...	[more]
heatr5a	1.562e-41	45.89	HEAT repeat containing 5a [Source:NCBI gene;Acc:36...	[more]
heatr5a	1.576e-41	45.89	HEAT repeat containing 5a [Source:NCBI gene;Acc:36...	[more]

BLAST of SMED30033426 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
heatr5b	9.573e-52	54.11	HEAT repeat containing 5B [Source:NCBI gene;Acc:10...	[more]
heatr5b	1.107e-51	54.11	HEAT repeat containing 5B [Source:NCBI gene;Acc:10...	[more]
heatr5b	1.186e-51	54.11	HEAT repeat containing 5B [Source:NCBI gene;Acc:10...	[more]
heatr5b	1.149e-48	50.32	HEAT repeat containing 5B [Source:NCBI gene;Acc:10...	[more]
heatr5b	7.750e-48	52.05	HEAT repeat containing 5B [Source:NCBI gene;Acc:10...	[more]

BLAST of SMED30033426 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2


Match Name	E-value	Identity	Description
Heatr5b	4.997e-54	55.48	HEAT repeat containing 5B [Source:MGI Symbol;Acc:M...	[more]
Heatr5a	6.406e-45	49.32	HEAT repeat containing 5A [Source:MGI Symbol;Acc:M...	[more]

BLAST of SMED30033426 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q8C547\|HTR5B_MOUSE	3.495e-53	55.48	HEAT repeat-containing protein 5B OS=Mus musculus ...	[more]
sp\|Q9P2D3\|HTR5B_HUMAN	3.151e-52	54.11	HEAT repeat-containing protein 5B OS=Homo sapiens ...	[more]
sp\|A1A5F2\|HTR5B_XENTR	6.284e-51	54.11	HEAT repeat-containing protein 5B OS=Xenopus tropi...	[more]
sp\|Q86XA9\|HTR5A_HUMAN	1.440e-48	51.37	HEAT repeat-containing protein 5A OS=Homo sapiens ...	[more]
sp\|Q5PRF0\|HTR5A_MOUSE	4.481e-44	49.32	HEAT repeat-containing protein 5A OS=Mus musculus ...	[more]

BLAST of SMED30033426 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0L8FI91	3.771e-65	64.38	Uncharacterized protein OS=Octopus bimaculoides OX...	[more]
V5I7R8	5.529e-62	61.64	HEAT repeat-containing protein 5B (Fragment) OS=An...	[more]
A0A0T6B9F0	9.743e-62	63.70	HEAT domain-containing protein (Fragment) OS=Oryct...	[more]
A0A210PI49	6.665e-60	67.12	HEAT repeat-containing protein 5B OS=Mizuhopecten ...	[more]
K1PBL7	8.403e-60	65.75	HEAT repeat-containing protein 5B OS=Crassostrea g...	[more]

BLAST of SMED30033426 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2


Match Name	E-value	Identity	Description
heatr5b	3.338e-53	53.42	HEAT repeat containing 5B [Source:ZFIN;Acc:ZDB-GEN...	[more]
heatr5a	7.720e-44	50.00	HEAT repeat containing 5a [Source:NCBI gene;Acc:36...	[more]

BLAST of SMED30033426 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
heatr5b	8.929e-52	51.37	HEAT repeat containing 5B [Source:ZFIN;Acc:ZDB-GEN...	[more]

BLAST of SMED30033426 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30033426 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30033426 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2


Match Name	E-value	Identity	Description
heatr5b	3.610e-54	54.79	HEAT repeat containing 5B [Source:NCBI gene;Acc:10...	[more]
heatr5b	4.427e-54	54.79	HEAT repeat containing 5B [Source:NCBI gene;Acc:10...	[more]

BLAST of SMED30033426 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2


Match Name	E-value	Identity	Description
SMESG000028228.1	3.329e-96	100.00	SMESG000028228.1	[more]
SMESG000028228.1	3.330e-96	100.00	SMESG000028228.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30033426 ID=SMED30033426|Name=SMED30033426|organism=Schmidtea mediterranea sexual|type=transcript|length=444bp
AACCTGTTTAAGTGACTTAATTAATACAGAAACAGTTTCTTCATATGACC
GGCCAACCATTCGTCCTAACTTGTGATAGATTTCTCCTAAAGCTGCTATT
GCAGCTAGCCTTGTTGGTAAATAACTTGGACTATCATCTTTAGATTTAAC
ATAATCATTACAAGTATTTATGGCCAAATGTAGTGAATAAGTATCTCCAA
CGCTGAAAAGAGTTCCAAGGTTTCGAGCTATTAATGTTCTTGTGCTTGGA
CCTGGAGACTTTTCAAGTTGATTTAGTAATATTTTTAAAATGTGTTCCTG
TTTTTCTTTAATGTCATTTTTGTTGGCTACATGTAGAACTTTATCGAGAA
ATCGTAGCCATTCATAAATGAAAACTGGGCGCTTATCATTTGAAAGTTTT
AATAATGCACTTTCATTCAATATCAAGTTTTGCGCTAATTCCAT

protein sequence of SMED30033426-orf-1

>SMED30033426-orf-1 ID=SMED30033426-orf-1|Name=SMED30033426-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=148bp
MELAQNLILNESALLKLSNDKRPVFIYEWLRFLDKVLHVANKNDIKEKQE
HILKILLNQLEKSPGPSTRTLIARNLGTLFSVGDTYSLHLAINTCNDYVK
SKDDSPSYLPTRLAAIAALGEIYHKLGRMVGRSYEETVSVLIKSLKQV

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000020	protonephridia
PLANA:0000034	epidermis
PLANA:0000099	neuron
PLANA:0000101	muscle cell

Vocabulary: **INTERPRO**
Term	Definition
IPR040108	Laa1/Sip1/HEATR5
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **molecular function**
Term	Definition
GO:0005488	binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21663:SF1	HEAT REPEAT-CONTAINING PROTEIN 5A	coord: 1..147
IPR040108	Laa1/Sip1/HEATR5	PANTHER	PTHR21663	HYPOTHETICAL HEAT DOMAIN-CONTAINING	coord: 1..147
IPR016024	Armadillo-type fold	SUPERFAMILY	SSF48371	ARM repeat	coord: 14..145

Main menu

SMED30033426

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Owlery

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