SMED30033345

Overview
NameSMED30033345
Smed IDSMED30033345
Length (bp)1623
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30033345 (SMED30033345) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30033345 (SMED30033345) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30033345

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymal cellSMED30033345SMESG000027312.1 dd_Smed_v4_15612_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
headSMED30033345SMESG000027312.1 dd_Smed_v6_15612_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30033345 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.002120:53069..54743 +7930
Homology
BLAST of SMED30033345 vs. Planmine SMEST
Match: SMESG000027312.1 (SMESG000027312.1)

HSP 1 Score: 781.556 bits (2017), Expect = 0.000e+0
Identity = 411/417 (98.56%), Postives = 414/417 (99.28%), Query Frame = 2
Query:  254 MQNYLIYALRVAGEKRLEGTIWNTFMYIGSVIFLFNFILILYSSHISYKYRNFIDKRIPENPXXXXXXXXXXXXXXXXXXIFIFIHNVMTLSVSKYANALFAGNLVMLFTAIISLLINTSGSKSTYESWSLNYINAFTTLFSITSLTNLLFYNLVHKATRTFRSTFLNNTIYHNGTYKCFYQFLPIFQTIIINTSFCFLPFLFVSINHYVKVLRQHLTDRNIKSGSNREVIVKFRPWEIFVLGFVFLAGLVSHYINEFFWISPQIYLINNFIMQFITIIVSLFLLFRISKLPKKQSRSNTTKTLIILFWIGLYGEMLYSLEALIVWGHNHNVFEIFKYVLKIIALFFQSISCFLCISNSFNNLWRKEEIIPLAYLAMINGITLIGIWLQTSPRKIKEYHNTLYMNIFDNGIFDFSKP 1504
            MQNYLIYALRVAGEKRLEGTIWNTFMYIGSVIFLFNFILILYSSHI+YKYRNFIDKRIPENPLILYLLCLPLLVLSLCGLIFIFIHNVMTLSVSKY NALFAGNLVMLFTAII+LLINTSGSKSTYESWSLNYINAFTTLFSITSLTNLL YNLVHKATRTFRSTFLNNTIYHNGTYKCFYQFLPIFQTIIINTSFCFLPFLFVSINHYVKVLRQ+LTDRNIKSGSNREVIVKFRPWEIFVLGFVFLAGLVSHYINEFFWISPQIYLINNFIMQFITIIVSLFLLFRISKLPKKQSRSNTTKTLIILFWIGLYGEMLYSLEALIVWGHNHNVFEIFKYVLKIIALFFQSISCFLCISNSFNNLWRKEEIIPLAYLAMINGITLIGIWLQTSPRKIKEY NTLYMNIFDNGIFDFSKP
Sbjct:    1 MQNYLIYALRVAGEKRLEGTIWNTFMYIGSVIFLFNFILILYSSHINYKYRNFIDKRIPENPLILYLLCLPLLVLSLCGLIFIFIHNVMTLSVSKYTNALFAGNLVMLFTAIITLLINTSGSKSTYESWSLNYINAFTTLFSITSLTNLLCYNLVHKATRTFRSTFLNNTIYHNGTYKCFYQFLPIFQTIIINTSFCFLPFLFVSINHYVKVLRQYLTDRNIKSGSNREVIVKFRPWEIFVLGFVFLAGLVSHYINEFFWISPQIYLINNFIMQFITIIVSLFLLFRISKLPKKQSRSNTTKTLIILFWIGLYGEMLYSLEALIVWGHNHNVFEIFKYVLKIIALFFQSISCFLCISNSFNNLWRKEEIIPLAYLAMINGITLIGIWLQTSPRKIKEYQNTLYMNIFDNGIFDFSKP 417          
BLAST of SMED30033345 vs. Planmine SMEST
Match: SMESG000027096.1 (SMESG000027096.1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.971e-15
Identity = 103/379 (27.18%), Postives = 179/379 (47.23%), Query Frame = 2
Query:  152 RKNIYKNSFSMFMYQEISMFLMYFLCVVSVDVSTMQNYLIYALRVAGEKRLEGTIWNTFMYIGSVIFLFNFILILYSSHISYKYRNFIDKRIPENPXXXXXXXXXXXXXXXXXXIFIFIHNVMTLSVSKYANALFAGNLVMLFTAIISLLINTSGSKSTYESWSLNYINAFTTLFSITSLTNLLFYNLVHKATRTFRSTFLNNTIYHNGTYK--CFYQ--------------FLPIFQTIIINTSFCFLPFLFVSI-NHYVKVLRQHLTDRNIKSGSNREVIVKFRPWEI---FVLGFVFLAGLVSHYINEFFWISPQIYLINNFIMQFITIIVSLFLLFRISKLPKKQSRSNTTKTLIILFWIGLYGEMLYSLEALIV 1228
            R  IYK++        ISMFL       S+ V+ +QNY IY LRV      E   W + + I +++F+ N +L   +S I+Y  RNF  K   ENP I+YL+CLPL+++    L +  +   + +      + +F+G++V+ F +++ ++IN   S +T E   +N +NAFT L S+ S+ NL  YN ++  +  F+ T   ++++++  +K  C  +               L      I+    C  P+    I +H+  + +  L   +     N   I   R + +   F L F F  G   +    F+ I   + L     +  +TI+V   L + +S + KK+SR    +T  I+  IG+ GE    ++ LI+
Sbjct:   16 RLEIYKDAI-------ISMFLF------SISVAIIQNYSIYTLRVTPYTVKEIAYWQSILAITTILFIINVMLAFLNSRINYINRNFFQKGPTENPKIVYLICLPLIIIIFSSLSYTTLFLFLYVDCGSVIDIVFSGSIVIFFISMMFVIINILSSSNTGELPLVNIVNAFTLLISLASIWNLTVYNSIYMLSADFKITV--SSVFNDSAFKNECRIRNVADNKWAINLNSILLSSLNISILMLGICLTPYFLKPIQSHFSFINKSILKSISCIEEENPSRINYNRYYSVLILFALCFTFYVGQKLYPSTNFYEIELILRLCILVSINLVTIVVMRDLKY-VSTVTKKESR----ETYYIILSIGIIGEFATIIQQLIL 374          
BLAST of SMED30033345 vs. Planmine SMEST
Match: SMESG000027091.1 (SMESG000027091.1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.188e-15
Identity = 104/386 (26.94%), Postives = 177/386 (45.85%), Query Frame = 2
Query:  152 RKNIYKNSFSMFMYQEISMFLMYFLCVVSVDVSTMQNYLIYALRVAGEKRLEGTIWNTFMYIGSVIFLFNFILILYSSHISYKYRNFIDKRIPENPXXXXXXXXXXXXXXXXXXIFIFIHNVMTLSVSKYANALFAGNLVMLFTAIISLLINTSGSKSTYESWSLNYINAFTTLFSITSLTNLLFYNLVHKATRTFRSTFLNNTIYHNGTYK--CFYQ--------------FLPIFQTIIINTSFCFLPFLFVSINHYVKVLRQHLTDRNIKSGSNREVIVKFRPWEI-----------FVLGFVFLAGLVSHYINEFFWISPQIYLINNFIMQFITIIVSLFLLFRISKLPKKQSRSNTTKTLIILFWIGLYGEMLYSLEALIV 1228
            R  IYK++        ISMFL       S+ V+ +QNY IY LRV      E   W + + I +++F+ N +L   +S I+Y  RNF  K   ENP I+YL+CLPL+V+    L +  +   + +      + +F+G++V+ F +++ ++IN   S +T E   +N +NAFT L S+ S+ NL  YN ++  +  F+ T     ++++  +K  C  +               L      I+    C  P       +++K ++ H +  N     +   I +  P  I           F L F F  G   +    F+ I   + L     +  +TI+V   L + +S + KK+SR    +T  I+  IG+ GE    ++ LI+
Sbjct:   16 RLEIYKDAI-------ISMFLF------SISVAIIQNYSIYTLRVTPYTVKEIAYWQSILAITTILFIINVMLAFLNSRINYINRNFFQKGPTENPKIVYLICLPLIVIIFSSLSYTTLFLFLYVDCGSVIDIVFSGSIVIFFISMMFVIINILSSSNTGELPLVNIVNAFTLLISLASIWNLTVYNSIYMLSADFKRTV--RIVFNDSAFKNECRIRNVTDNKWAINLNSILLSSLNISILMLGICLTP-------YFLKPIQSHFSFINKSIIKSISCIEEENPSRINYNRYYSVLILFALCFTFYVGQKLYPSTNFYEIELILRLCILVSINLVTIVVMRDLKY-VSTVTKKESR----ETYYIILSIGIIGEFATIIQQLIL 374          
BLAST of SMED30033345 vs. Planmine SMEST
Match: SMESG000027093.1 (SMESG000027093.1)

HSP 1 Score: 75.485 bits (184), Expect = 3.405e-14
Identity = 95/361 (26.32%), Postives = 174/361 (48.20%), Query Frame = 2
Query:  236 SVDVSTMQNYLIYALRVAGEKRLEGTIWNTFMYIGSVIFLFNFILILYSSHISYKYRNFIDKRIPENPXXXXXXX----XXXXXXXXXXXIFIFIHNVMTLSVSKYANALFAGNLVMLFTAIISLLINTSGSKSTYESWSLNYINAFTTLFSITSLTNLLFYNLVHKATRTFRSTFLNNTIYHNGTY--KCFYQ--------------FLPIFQTIIINTSFCFLPFLFVSINHYVKVLRQHLT--DRNIKSGSNREVI--VKFRPWEIFVLGFVFLAGLVSHYINEFFWISPQIYLINNFIMQFITIIVSLFLLFRISKLPKKQSRSNTTKTLI--ILFWIGLYGEMLYSLEALIVWGHN 1240
            +V V  + NY IY L +     +    W T ++I +++FL N  LIL +  ++Y  RNF  K   ENP I+YL+C    + +L        F+F  N        + + +FAG++++ FT++I L+IN   S  T E   +N INAFT + S+ S+ NL  YN+    T +F++T     +++  T+  +C  +               LP+ +   I    C +P+LF       + L+ H++  +++I + S+   +  V  + ++ + L  V +    + +I + F  S  I  I  F+   + +IV+L  +  +  +    +  N + ++   I  WIG+ GE +  +E LI+  +N
Sbjct:   31 TVGVGIVWNYTIYTLSLTPYTIIRIEYWKTILFISTILFLLNVGLILTNYRVNYMNRNFFLKGPTENPKIVYLICFPLIILILSSLSYTAAFLFHFN----DCGSFIDIIFAGSIILFFTSMIFLIINVLSSSDTGELPLVNIINAFTLMVSLASVWNLTLYNIELVLTNSFKTTV--KRVFNEATFFNQCSNKNIPNSPWPVDLDVNMLPLLRISSIILGICLMPYLF-------RPLKSHISFINKSIPNASHYFDVEFVSRKNYKNYYLSIVMIVLNFAIFIAKKFSPSNIIDTIALFLFFCVMLIVNLVSVVLLVDMQYIPTTGNGSASVTHYIFLWIGVIGEFVSVIERLILCIYN 378          
BLAST of SMED30033345 vs. Planmine SMEST
Match: SMESG000016790.1 (SMESG000016790.1)

HSP 1 Score: 55.4546 bits (132), Expect = 6.493e-8
Identity = 111/391 (28.39%), Postives = 187/391 (47.83%), Query Frame = 2
Query:  239 VDVSTMQNYLIYALRVAGEKRLEGTIWNTFMYIGSVIFLFNFILILYSSHISYKYRNFIDKRIPENPXXXXXXXXXXXXXXXXXXIFIFIHNVMTLSVSKYANALFAGNLVML---FTAIISLLINTSGSKSTYESWSLNYINAFTTLFSITSLTNLLF----YNLVHKATRTFRSTFLNNTIYHNGTYKCFYQFLPIF--QTIIINTSFCFLPFLFVSINH----YVKVLRQHLTDRNIK--SGSNREVIVKFRPWEIFVLGFVFLAGLVSHYINEFFWISPQIYLINNFIMQFITIIVSLFLLF------RISKLPKKQSRSNTTKTLIILFWIGLYGEMLYSLEALIVW------GHN--HNVFEIFKYVLKIIALFFQSISCFLCIS 1324
            + +  M  Y  Y++R+         +W  + Y  S   L N +LI    +++Y+YRN    RI E PLI YL+CLP L+L++   IF+ I  +M        N L A NL+ML   F  +I L+INTSG   T E W++N+IN FT    I+S+   +F    Y++ +  T  FR  F++  I  +         +PI   Q+I+I         LFV +N     Y+K   QH+     +  SG+N+ ++       + + G +     ++  +   F+   Q   I+  +++ ++ I+ +FL+       R+ KLP   S  N  K + I  + GL+G  +  + AL+ +      GH+    +F     ++K++ LF Q  +CFL +S
Sbjct:   27 LGLGIMSVYFYYSIRMIPSS--AKVLWKIYNYGISGFELLNILLIYVCLNVNYRYRNLRMTRIIEQPLIFYLICLPFLILTMNISIFLMI--IMFFHSYLLENGL-AVNLLMLSITFFILIILIINTSGFTDTGEEWNMNFINVFT----ISSVAMSIFFHFNYSVTYLETANFR-LFISPVINSSFEMSPIIGKMPIILGQSIMI---------LFVVLNPYFYIYLKNNLQHILKHRYRQISGTNQSIL--HNKHRVLIFGSILPISALTMTVVIRFYPGNQQNSID--VVRIVSEILKMFLILVIMPEWRVEKLP---SHKNFHKIINIFLFFGLFGVCVKFMSALVKYVMFVLDGHSGGRGLFIFSIDIVKLLELFSQ--TCFLSLS 389          
The following BLAST results are available for this feature:
BLAST of SMED30033345 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033345 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033345 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033345 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033345 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033345 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033345 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033345 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033345 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033345 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033345 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033345 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033345 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033345 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000027312.10.000e+098.56SMESG000027312.1[more]
SMESG000027096.13.971e-1527.18SMESG000027096.1[more]
SMESG000027091.14.188e-1526.94SMESG000027091.1[more]
SMESG000027093.13.405e-1426.32SMESG000027093.1[more]
SMESG000016790.16.493e-828.39SMESG000016790.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30033345 ID=SMED30033345|Name=SMED30033345|organism=Schmidtea mediterranea sexual|type=transcript|length=1623bp
TGATCCTCTAATTTCACTATGAAATTTTTCTTCGTATTTTCGGTTGAACC
GTCAAATCAATTATAAAAAATAAAAATTTGTAGTTTATTATTATTCTGTG
AATCACAAGTACGAAACCTCGGTGGTAACTGACAAACAAACTGAAGAAGA
CCGGAAAAATATTTATAAAAATTCCTTCTCAATGTTCATGTATCAAGAAA
TATCCATGTTTTTGATGTACTTTCTGTGTGTTGTCTCCGTTGACGTTAGC
ACTATGCAAAACTATTTGATATACGCTCTCAGAGTTGCGGGTGAGAAAAG
ATTGGAAGGAACAATTTGGAATACATTCATGTATATTGGGTCGGTAATAT
TCCTGTTTAATTTCATTCTGATCCTCTACAGTTCTCATATCAGCTACAAA
TACAGGAATTTCATTGACAAACGAATCCCGGAAAACCCATTAATACTTTA
TCTCCTTTGCTTACCCTTGCTGGTATTGTCATTATGTGGGTTAATATTTA
TTTTTATACATAATGTCATGACCTTGAGCGTGAGTAAATATGCCAATGCT
TTATTTGCAGGGAATTTGGTAATGTTGTTCACAGCCATTATTTCTCTACT
CATCAACACTAGCGGGTCAAAGTCAACTTACGAAAGCTGGAGTCTCAATT
ACATCAATGCCTTCACAACTTTATTTTCAATTACTTCACTGACAAATTTA
CTTTTTTACAATCTCGTTCATAAAGCCACTCGAACATTCCGATCAACATT
TCTAAACAATACTATTTATCACAATGGAACATACAAATGCTTTTACCAAT
TTCTGCCTATCTTTCAAACCATTATAATAAATACGTCCTTTTGTTTCCTA
CCGTTTCTCTTCGTGTCCATTAATCATTATGTAAAGGTGCTCCGTCAACA
TCTCACTGACAGAAATATAAAATCAGGCTCAAATAGGGAGGTCATTGTCA
AGTTCCGTCCTTGGGAAATATTTGTTCTCGGCTTTGTGTTTCTGGCGGGA
TTGGTATCGCATTATATTAATGAGTTTTTCTGGATTTCTCCACAAATCTA
TTTGATCAACAATTTTATAATGCAATTTATAACTATTATTGTTTCCTTAT
TCTTGTTATTCCGAATTTCGAAATTACCAAAGAAACAATCTCGTTCAAAT
ACTACAAAAACTCTGATAATATTGTTCTGGATTGGACTTTATGGAGAGAT
GTTGTATTCCCTAGAGGCCTTGATCGTATGGGGCCATAATCATAATGTCT
TTGAAATATTCAAATACGTACTCAAAATAATTGCACTATTTTTTCAGAGT
ATTTCTTGTTTTTTGTGTATCTCAAATAGTTTCAATAATCTGTGGAGAAA
GGAGGAAATCATTCCATTAGCATACCTGGCAATGATAAATGGGATCACCT
TAATAGGAATATGGCTACAGACTTCCCCTCGTAAAATCAAGGAGTATCAC
AACACGTTATATATGAATATTTTTGACAATGGAATTTTCGATTTTAGCAA
ACCTTTAAGTTTATTATTTCGAGCGATTTCATTTCTGATTTTCTCTTTTT
CTATTCGGATTTGAGGATAGAACTAATTTTTTTGCTTCGAGAGCATTAAT
ATAACCTATGACCTCTCATTCAC
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protein sequence of SMED30033345-orf-1

>SMED30033345-orf-1 ID=SMED30033345-orf-1|Name=SMED30033345-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=461bp
MFMYQEISMFLMYFLCVVSVDVSTMQNYLIYALRVAGEKRLEGTIWNTFM
YIGSVIFLFNFILILYSSHISYKYRNFIDKRIPENPLILYLLCLPLLVLS
LCGLIFIFIHNVMTLSVSKYANALFAGNLVMLFTAIISLLINTSGSKSTY
ESWSLNYINAFTTLFSITSLTNLLFYNLVHKATRTFRSTFLNNTIYHNGT
YKCFYQFLPIFQTIIINTSFCFLPFLFVSINHYVKVLRQHLTDRNIKSGS
NREVIVKFRPWEIFVLGFVFLAGLVSHYINEFFWISPQIYLINNFIMQFI
TIIVSLFLLFRISKLPKKQSRSNTTKTLIILFWIGLYGEMLYSLEALIVW
GHNHNVFEIFKYVLKIIALFFQSISCFLCISNSFNNLWRKEEIIPLAYLA
MINGITLIGIWLQTSPRKIKEYHNTLYMNIFDNGIFDFSKPLSLLFRAIS
FLIFSFSIRI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 87..109
NoneNo IPR availableTMHMMTMhelixcoord: 435..457
NoneNo IPR availableTMHMMTMhelixcoord: 393..415
NoneNo IPR availableTMHMMTMhelixcoord: 208..230
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 158..180
NoneNo IPR availableTMHMMTMhelixcoord: 329..351
NoneNo IPR availableTMHMMTMhelixcoord: 124..146
NoneNo IPR availableTMHMMTMhelixcoord: 263..285
NoneNo IPR availableTMHMMTMhelixcoord: 44..66
NoneNo IPR availableTMHMMTMhelixcoord: 366..388
NoneNo IPR availableTMHMMTMhelixcoord: 289..308