SMED30033335

Overview
NameSMED30033335
Smed IDSMED30033335
Length (bp)3555
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30033335 (SMED30033335) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30033335 (SMED30033335) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30033335 (SMED30033335) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30033335 (SMED30033335) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30033335

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
headSMED30033335SMESG000002226.1 SmedASXL_007343SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
pharynxSMED30033335SMESG000002226.1 dd_Smed_v4_10738_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
neuronSMED30033335SMESG000002226.1 dd_Smed_v4_10738_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
headSMED30033335SMESG000002226.1 dd_Smed_v6_10738_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
reproductive organSMED30033335SMESG000032685.1 SMESG000002226.1 Contig43445newmark_estsPMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30033335SMESG000032685.1 SMESG000002226.1 Contig43445uc_Smed_v2PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30033335 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001850:57365..74823 +13717
Homology
BLAST of SMED30033335 vs. Planmine SMEST
Match: SMESG000002226.1 (SMESG000002226.1)

HSP 1 Score: 2067.74 bits (5356), Expect = 0.000e+0
Identity = 1143/1157 (98.79%), Postives = 1144/1157 (98.88%), Query Frame = 1
Query:   49 MNSSLPDNYSKVDYKDCNKIKLENEKLHDQNKKLITKLEQITCEFSKSQNKIKSLELQNSSTKGINGNLTSILERNKTLEEDNKKLCEEIKFQLDSTKLFEAPVSKILMENNSNNCEEAEMVKYVSEGKLTHLNDQIQELRKQLLKSQQLAYKSECNYKINQIETLEALKNCKLENDSLIEKNLELENKVKNIINLHSENLEMKTILYRSQNDLNVLKSDFDNLKLKQVESTKIFDHEKKMLEKQLTVVHKKNEDLHDENQILLSTIDELTKSEMKNKFEKCSECNKNSKKLEESYQQIEAFELQLQQVQESKSKAEKDFLSQTESFKHFEEEQCKLKEEIKHLNGVKLNFDSSMKLKLNEIDNLTCQLESCSQRLELREQRIDELTKQLSSKVAEERNLKSRIDKVTEKLTLSQDEINKYINDLSEIQKEKERFSENLKNLQQAMTEKXXXXXXXXXXXNETLSANNQLEESLQFHTSSSDTKLRDYANNIKDLTEKLDELNYSINIYENQNHCXXXXXXXXXXXXXXXINNEIKIVESHQIEITRYQVQMAKNQELIDSCHSEIKDKDCKINEIESXXXXXXXXXXXXXXXXXXXXXTAKGITEELSITKKQLLSFTEQMKAYQNNTETIQHLKIKLSKRSNKVNLQENTISELNEKIEVLNQDSINQKKICENLQCKLSRIEKCYEKLKLKTSCSQESLDRKLKALNNVIETNQIEHKQLVEEFHSLAQERDDLLNXXXXXXXXXXXXXXXXXXXXDEISHAQHIIGTLKDEISGKEKTLNKLEKKVTNLHDYLKCSQLNVVDKSREIDRLEQLVRDRSEQIELRSNQLQEFEMDLEKKLIESQKQMETAKEHEAVAMAEVENLKVKIREFGQGLDLAHQENCKLIDGIKIKEQEYNSVIGHLKKLKDENKIIINKMKSLTNDSETKAMTIKSLKATIVLDENTIDKLTDEMRSKVAILKGKSLQIKTLEDQIKKDKKNFMQTEAELQAQIKLLTRKLNSHNTEKKKEMDNLFESLSNQYQDQLNELIASKKLTETLSANLDEASIKLFEKEEHISELKAQINTQSMVMVDMESKHRLKEAVIERLMQNIDDLTLTNWPNELSGKMSNEGDVMKGKGRLVEHIQAGTNCIYEDVTLEELLTRLNIRLNSDHTNN 3519
            MNSSLPDNYSKVDYKDCNKIKLENEKLHDQNKKLITKLEQITCEFSKSQNKIKSLELQNS             +RNKTLEEDNKKLCEEIKFQLDSTKLFEAPVSKILMENNSNNCEEAEMVKYVSEGKLTHLNDQIQELRKQLLKSQQLAYKSECNYKINQIETLEALKNCKLENDSLIEKNLELENKVKNIINLHSENLEMKTILYRSQNDLNVLKSDFDNLKLKQVESTKIFDHEKKMLEKQLTVVHKKNEDLHDENQILLSTIDELTKSEMKNKFEKCSECNKNSKKLEESYQQIEAFELQLQQVQESKSKAEKDFLSQTESFKHFEEEQCKLKEEIKHLNGVKLNFDSSMKLKLNEIDNLTCQLESCSQRLELREQRIDELTKQLSSKVAEERNLKSRIDKVTEKLTLSQDEINKYINDLSEIQKEKERFSENLKNLQQAMTEKLLLVDQLSLKLNETLSANNQLEESLQFHTSSSDTKLRDYANNIKDLTEKLDELNYSINIYENQNHCLESELKETKSKLELSINNEIKIVESHQIEITRYQVQMAKNQELIDSCHSEIKDKDCKINEIESLKNELHLKLLEKNNENEYLSKTAKGITEELSITKKQLLSFTEQMKAYQNNTETIQHLKIKLSKRSNKVNLQENTISELNEKIEVLNQDSINQKKICENLQCKLSRIEKCYEKLKLKTSCSQESLDRKLKALNNVIETNQIEHKQLVEEFHSLAQERDDLLNKLREKEEIIIRVEREIKRHKDEISHAQHIIGTLKDEISGKEKTLNKLEKKVTNLHDYLKCSQLNVVDKSREIDRLEQLVRDRSEQIELRSNQLQEFEMDLEKKLIESQKQMETAKEHEAVAMAEVENLKVKIREFGQGLDLAHQENCKLIDGIKIKEQEYNSVIGHLKKLKDENKIIINKMKSLTNDSETKAMTIKSLKATIVLDENTIDKLTDEMRSKVAILKGKSLQIKTLEDQIKKDKKNFMQTEAELQAQIKLLTRKLNSHNTEKKKEMDNLFESLSNQYQDQLNELIASKKLTETLSANLDEASIKLFEKEEHISELKAQINTQSMVMVDMESKHRLKEAVIERLMQNIDDLTLTNWPNELSGKMSNEGDVMKGKGRLVEHIQAGTNCIYEDVTLEELLTRLNIRLNSDHTNN
Sbjct:    1 MNSSLPDNYSKVDYKDCNKIKLENEKLHDQNKKLITKLEQITCEFSKSQNKIKSLELQNS-------------KRNKTLEEDNKKLCEEIKFQLDSTKLFEAPVSKILMENNSNNCEEAEMVKYVSEGKLTHLNDQIQELRKQLLKSQQLAYKSECNYKINQIETLEALKNCKLENDSLIEKNLELENKVKNIINLHSENLEMKTILYRSQNDLNVLKSDFDNLKLKQVESTKIFDHEKKMLEKQLTVVHKKNEDLHDENQILLSTIDELTKSEMKNKFEKCSECNKNSKKLEESYQQIEAFELQLQQVQESKSKAEKDFLSQTESFKHFEEEQCKLKEEIKHLNGVKLNFDSSMKLKLNEIDNLTCQLESCSQRLELREQRIDELTKQLSSKVAEERNLKSRIDKVTEKLTLSQDEINKYINDLSEIQKEKERFSENLKNLQQAMTEKLLLVDQLSLKLNETLSANNQLEESLQFHTSSSDTKLRDYANNIKDLTEKLDELNYSINIYENQNHCLESELKETKSKLELSINNEIKIVESHQIEITRYQVQMAKNQELIDSCHSEIKDKDCKINEIESLKNELHLKLLEKNNENEYLSKTAKGITEELSITKKQLLSFTEQMKAYQNNTETIQHLKIKLSKRSNKVNLQENTISELNEKIEVLNQDSINQKKICENLQCKLSRIEKCYEKLKLKTSCSQESLDRKLKALNNVIETNQIEHKQLVEEFHSLAQERDDLLNKLREKEEIIIRVEREIKRHKDEISHAQHIIGTLKDEISGKEKTLNKLEKKVTNLHDYLKCSQLNVVDKSREIDRLEQLVRDRSEQIELRSNQLQEFEMDLEKKLIESQKQMETAKEHEAVAMAEVENLKVKIREFGQGLDLAHQENCKLIDGIKIKEQEYNSVIGHLKKLKDENKIIINKMKSLTNDSETKAMTIKSLKATIVLDENTIDKLTDEMRSKVAILKGKSLQIKTLEDQIKKDKKNFMQTEAELQAQIKLLTRKLNSHNTEKKKEMDNLFESLSNQYQDQLNELIASKKLTETLSANLDEASIKLFEKEEHISELKAQINTQSMVMVDMESKHRLKEAVIERLMQNIDDLTLTNWPNELSGKMSNEGDVMKGKGRLVEHIQAGTNCIYEDVTLEELLTRLNIRLNSDHTNN 1144          
The following BLAST results are available for this feature:
BLAST of SMED30033335 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033335 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033335 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033335 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033335 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033335 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033335 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033335 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033335 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033335 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033335 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033335 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033335 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30033335 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000002226.10.000e+098.79SMESG000002226.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30033335 ID=SMED30033335|Name=SMED30033335|organism=Schmidtea mediterranea sexual|type=transcript|length=3555bp
TAATTATTGTTGAAGAGTGACATTAATTAACAAGCAGTTTCATAAAAAAT
GAATTCTTCATTGCCAGACAACTATTCTAAAGTTGATTACAAAGATTGTA
ATAAAATTAAACTTGAAAATGAAAAATTACATGATCAAAATAAAAAATTG
ATAACTAAATTAGAACAGATCACCTGTGAATTCAGCAAATCCCAAAACAA
AATTAAAAGCTTGGAATTGCAAAATTCAAGTACGAAAGGTATTAATGGAA
ATCTCACTTCTATCTTAGAAAGAAACAAAACATTAGAAGAAGACAACAAA
AAGCTGTGCGAAGAAATCAAATTTCAATTAGATTCAACTAAGTTATTTGA
AGCACCAGTTAGTAAAATCCTCATGGAAAACAACAGCAATAATTGCGAAG
AAGCTGAAATGGTGAAATATGTGTCCGAGGGTAAATTGACTCACCTAAAC
GATCAAATTCAAGAATTGCGAAAACAACTTTTGAAAAGTCAACAGTTGGC
TTATAAATCCGAATGCAATTATAAAATAAATCAAATTGAAACTTTAGAGG
CGTTAAAAAACTGTAAACTAGAAAACGATAGTTTAATTGAAAAAAATTTG
GAATTGGAAAACAAAGTGAAGAATATCATAAATCTTCACAGTGAGAATTT
GGAAATGAAGACAATTTTATACCGCAGTCAAAATGATCTAAACGTCCTCA
AATCGGATTTTGATAATCTGAAACTGAAGCAAGTAGAATCCACAAAAATA
TTTGACCACGAGAAAAAGATGCTTGAAAAACAGTTGACAGTCGTTCACAA
AAAGAACGAAGATTTGCACGATGAAAACCAAATTTTATTGTCAACAATTG
ATGAATTAACAAAATCTGAGATGAAAAATAAATTCGAAAAATGTTCCGAA
TGTAACAAGAATTCCAAGAAATTGGAAGAATCATATCAACAAATCGAAGC
GTTTGAGTTACAATTGCAGCAGGTTCAAGAATCAAAATCGAAAGCTGAGA
AAGATTTTTTATCCCAAACCGAATCCTTCAAACACTTTGAAGAAGAACAA
TGCAAGTTGAAAGAGGAAATCAAACATTTGAATGGAGTCAAGTTGAATTT
TGACTCCTCAATGAAATTGAAATTGAATGAAATAGACAATTTGACATGCC
AATTAGAGTCGTGCAGTCAAAGATTAGAATTACGGGAGCAACGTATAGAT
GAGCTTACTAAGCAGTTATCCTCCAAGGTAGCAGAGGAAAGAAATTTGAA
ATCTAGAATCGATAAAGTAACAGAGAAATTGACTCTTTCCCAGGATGAAA
TTAATAAATATATAAACGACCTGTCAGAAATTCAGAAGGAAAAAGAAAGA
TTCTCTGAAAACTTGAAAAATCTCCAACAGGCCATGACAGAAAAACTGCT
ATTAGTTGATCAGCTTTCACTAAAACTTAACGAAACTTTGTCGGCAAATA
ATCAACTGGAAGAATCATTACAATTCCACACTTCAAGCAGTGACACGAAA
CTCCGTGATTATGCCAACAACATTAAGGATTTGACAGAAAAACTAGACGA
ATTGAACTATTCAATAAATATCTATGAAAACCAAAACCACTGCCTGGAAT
CCGAGCTAAAAGAGACAAAATCAAAATTGGAGTTGTCAATAAATAACGAG
ATAAAGATCGTCGAAAGCCACCAAATAGAGATCACTAGATATCAAGTTCA
AATGGCAAAGAATCAGGAACTCATTGACAGCTGCCATAGTGAAATAAAGG
ATAAAGATTGTAAAATAAATGAAATTGAAAGTCTAAAGAACGAACTCCAT
TTGAAATTGTTAGAAAAGAACAATGAGAATGAATATCTATCGAAGACTGC
CAAAGGAATCACTGAAGAATTGTCCATTACAAAGAAACAGTTATTATCGT
TCACTGAACAAATGAAAGCTTATCAAAATAATACGGAAACGATCCAGCAT
TTAAAGATAAAACTATCGAAACGATCGAATAAAGTCAACCTTCAAGAGAA
CACAATCTCTGAACTGAATGAGAAAATTGAAGTTCTCAATCAAGATTCGA
TTAATCAAAAAAAAATTTGTGAAAATCTTCAATGTAAATTGTCGAGAATT
GAAAAATGCTATGAAAAACTCAAACTTAAGACATCTTGTAGCCAGGAATC
TTTGGACCGCAAATTGAAAGCTCTGAATAATGTCATTGAGACCAATCAAA
TCGAGCACAAACAGCTAGTTGAGGAATTTCATTCTCTTGCCCAGGAGCGA
GATGATTTACTAAATAAGCTACGAGAGAAGGAGGAAATAATAATTCGGGT
TGAAAGGGAAATTAAACGACATAAAGATGAAATATCACATGCTCAGCACA
TTATTGGAACACTGAAAGACGAAATCAGCGGAAAGGAGAAAACTCTTAAT
AAACTAGAAAAGAAAGTGACGAATCTACACGATTATCTAAAATGCAGTCA
ACTCAATGTTGTTGACAAATCCCGTGAAATTGATAGACTTGAACAGCTGG
TTCGTGATCGTTCCGAACAGATTGAGCTCCGCTCGAATCAACTCCAAGAA
TTCGAGATGGATTTAGAAAAAAAACTGATCGAAAGTCAGAAACAAATGGA
AACTGCAAAGGAACACGAAGCAGTTGCTATGGCAGAAGTGGAAAATTTGA
AAGTGAAAATCCGTGAATTTGGTCAAGGCTTAGACTTAGCACATCAGGAA
AATTGTAAATTAATAGATGGTATTAAAATTAAAGAACAGGAATATAATTC
AGTTATTGGTCACTTGAAAAAATTAAAAGACGAAAATAAAATAATAATAA
ATAAAATGAAGTCTCTCACGAATGATAGTGAAACGAAAGCTATGACAATT
AAAAGTCTTAAAGCTACAATAGTACTTGATGAGAATACAATTGATAAATT
AACTGACGAAATGCGCTCAAAAGTTGCAATATTAAAAGGGAAAAGCTTAC
AAATCAAAACGTTAGAAGACCAAATTAAAAAAGACAAAAAAAATTTCATG
CAAACTGAGGCAGAATTACAGGCCCAAATCAAGCTGCTAACGCGGAAACT
CAATTCGCATAATACTGAGAAGAAAAAGGAAATGGACAATTTATTTGAAA
GTTTATCTAATCAGTATCAAGATCAGTTGAATGAGCTCATTGCATCAAAA
AAGCTTACCGAAACACTCAGTGCAAACCTTGATGAAGCAAGTATTAAATT
ATTCGAGAAAGAAGAACATATCAGCGAGTTGAAAGCCCAAATTAATACTC
AGTCAATGGTGATGGTTGATATGGAAAGCAAGCACAGGTTGAAAGAGGCG
GTGATTGAAAGATTAATGCAGAATATCGATGATCTCACACTGACCAACTG
GCCAAATGAATTAAGCGGTAAAATGTCCAATGAGGGAGATGTGATGAAAG
GCAAAGGGAGATTAGTGGAGCACATCCAAGCCGGGACAAATTGCATTTAT
GAAGATGTAACATTGGAAGAGCTGCTGACCAGGTTAAACATTCGATTAAA
TAGTGATCATACAAACAATTGAAAAAATAAATATTTTGATATTATGAAAA
AAAAA
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protein sequence of SMED30033335-orf-1

>SMED30033335-orf-1 ID=SMED30033335-orf-1|Name=SMED30033335-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1158bp
MNSSLPDNYSKVDYKDCNKIKLENEKLHDQNKKLITKLEQITCEFSKSQN
KIKSLELQNSSTKGINGNLTSILERNKTLEEDNKKLCEEIKFQLDSTKLF
EAPVSKILMENNSNNCEEAEMVKYVSEGKLTHLNDQIQELRKQLLKSQQL
AYKSECNYKINQIETLEALKNCKLENDSLIEKNLELENKVKNIINLHSEN
LEMKTILYRSQNDLNVLKSDFDNLKLKQVESTKIFDHEKKMLEKQLTVVH
KKNEDLHDENQILLSTIDELTKSEMKNKFEKCSECNKNSKKLEESYQQIE
AFELQLQQVQESKSKAEKDFLSQTESFKHFEEEQCKLKEEIKHLNGVKLN
FDSSMKLKLNEIDNLTCQLESCSQRLELREQRIDELTKQLSSKVAEERNL
KSRIDKVTEKLTLSQDEINKYINDLSEIQKEKERFSENLKNLQQAMTEKL
LLVDQLSLKLNETLSANNQLEESLQFHTSSSDTKLRDYANNIKDLTEKLD
ELNYSINIYENQNHCLESELKETKSKLELSINNEIKIVESHQIEITRYQV
QMAKNQELIDSCHSEIKDKDCKINEIESLKNELHLKLLEKNNENEYLSKT
AKGITEELSITKKQLLSFTEQMKAYQNNTETIQHLKIKLSKRSNKVNLQE
NTISELNEKIEVLNQDSINQKKICENLQCKLSRIEKCYEKLKLKTSCSQE
SLDRKLKALNNVIETNQIEHKQLVEEFHSLAQERDDLLNKLREKEEIIIR
VEREIKRHKDEISHAQHIIGTLKDEISGKEKTLNKLEKKVTNLHDYLKCS
QLNVVDKSREIDRLEQLVRDRSEQIELRSNQLQEFEMDLEKKLIESQKQM
ETAKEHEAVAMAEVENLKVKIREFGQGLDLAHQENCKLIDGIKIKEQEYN
SVIGHLKKLKDENKIIINKMKSLTNDSETKAMTIKSLKATIVLDENTIDK
LTDEMRSKVAILKGKSLQIKTLEDQIKKDKKNFMQTEAELQAQIKLLTRK
LNSHNTEKKKEMDNLFESLSNQYQDQLNELIASKKLTETLSANLDEASIK
LFEKEEHISELKAQINTQSMVMVDMESKHRLKEAVIERLMQNIDDLTLTN
WPNELSGKMSNEGDVMKGKGRLVEHIQAGTNCIYEDVTLEELLTRLNIRL
NSDHTNN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000099neuron
PLANA:0000418head
PLANA:0002089reproductive organ
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 934..954
NoneNo IPR availableCOILSCoilCoilcoord: 169..196
NoneNo IPR availableCOILSCoilCoilcoord: 69..89
NoneNo IPR availableCOILSCoilCoilcoord: 962..1029
NoneNo IPR availableCOILSCoilCoilcoord: 130..150
NoneNo IPR availableCOILSCoilCoilcoord: 573..593
NoneNo IPR availableCOILSCoilCoilcoord: 706..789
NoneNo IPR availableCOILSCoilCoilcoord: 453..473
NoneNo IPR availableCOILSCoilCoilcoord: 17..58
NoneNo IPR availableCOILSCoilCoilcoord: 292..319
NoneNo IPR availableCOILSCoilCoilcoord: 836..856
NoneNo IPR availableCOILSCoilCoilcoord: 362..403
NoneNo IPR availableCOILSCoilCoilcoord: 411..445
NoneNo IPR availableCOILSCoilCoilcoord: 253..273
NoneNo IPR availableCOILSCoilCoilcoord: 1044..1064
NoneNo IPR availableCOILSCoilCoilcoord: 892..926
NoneNo IPR availableCOILSCoilCoilcoord: 674..694
NoneNo IPR availableCOILSCoilCoilcoord: 646..666
NoneNo IPR availableCOILSCoilCoilcoord: 485..526
NoneNo IPR availableSUPERFAMILYSSF57997Tropomyosincoord: 354..567