tRNA 2-thiocytidine biosynthesis protein TtcA
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30033303 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 6Note: Hover over icons to view figure legend
Homology
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Human
Match: DCDC2 (doublecortin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18141]) HSP 1 Score: 51.2174 bits (121), Expect = 8.806e-6 Identity = 49/214 (22.90%), Postives = 104/214 (48.60%), Query Frame = 2 Query: 56 LMNYIQIYKNGDFRSTPKKIILKKDNGLFYWRSFLEEITSCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQDYIGFGKISIDSLN--DLTMLTSVGSR-NLNKRIPQNICMKNVEIKVYKNGDPNTRAIHVKVQPFSRYKMGNLLKSIEEQVFLSSKKPIKRLYKLNGEEIKDITEIENGKSYVVTANEKYEHVKYGQEL 688 ++ + +Y+NGD +++++ + + + FL+E+T +Q V+ I G +++ +D YVA + E F K +Y+ G+I + + + + SR N++ R + + I + NGD A + + + + ++L+ + E++ L S + RLY L G+ ++ E+ENG+ YV +K++ + Y + L Sbjct: 15 VVKSVLVYRNGDPFYAGRRVVIHEKK-VSSFEVFLKEVTGGVQAPFGAVRNIYTPRTGHRIRKLDQIQSGGNYVAGGQ-EAFKKLNYLDIGEIKKRPMEVVNTEVKPVIHSRINVSARF-RKPLQEPCTIFLIANGDLINPASRLLIPRKTLNQWDHVLQMVTEKITLRSGA-VHRLYTLEGKLVESGAELENGQFYVAVGRDKFKKLPYSELL 224
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Celegans
Match: Y71H2B.5 (pep chromosome:WBcel235:III:2608017:2618856:1 gene:WBGene00022195.1 transcript:Y71H2B.5.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y71H2B.5) HSP 1 Score: 401.749 bits (1031), Expect = 1.106e-124 Identity = 234/608 (38.49%), Postives = 339/608 (55.76%), Query Frame = 2 Query: 836 AENKISCYIDLFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPP---IIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVL--MKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAK-RIPIFSFLIRCEIERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGPYGMDLLGIDEKLAVKYLSLLVGKNMNEIEHLTCIPDFPKRDIFKPGFVRINLPYFINQSEVNFILDAILFVAEHGYKFLPYYQFKPDSSEWRHIDHKTTTKVKKLEEISYKHGFMDWNYDTMKTKTNYPASFAGTIAEAFNKMNQIVNNPKYLQDDSYLFEECTDG-------------------LRWFMLPSEAAK 2584 AEN S +L ++ + IGR + GPFG R YCDYTAS R IE ++ EVLP Y NTH++ T + QTT F HEAR+ I D D VIFTGSG+T A+ L + MS K I+V EHHSNLLPWRKIA I+ + G++D+ L++VL +++ H + ++IG F AASN+TGIL D+ V+ I+ ++ +WD+ASA PY+ I +N P DAV+FS HKF GG SPGVLIVK+++ + T P GGGTVFFV +LK++E REEGGT + VG++R + ++K SI + + E + K++ +NLV+LG + R+P+FSFLIR + L+ HH++I LLNDLFGIQ+R+GC CAGPY LLGIDE+L+ +++S + + HL ++ +++ +PGF RI+ PYF +EV+ IL+AI F+A+H FL YQ ++ EW H + + + L G + + +KTK P + + ++ + K L+ L +E +D LRWF+LP E A+ Sbjct: 28 AENSNS--TELLSWMRNDEIGRKSVMDGPFGARKVTYCDYTASARAFTSIETYIQHEVLPFYGNTHSSVTVTAEQTTLFMHEARQEIRAFSGCGDQDSVIFTGSGSTCAVELLVHLMSDGKDDEEVIVVHSSQEHHSNLLPWRKIAKECRNIEELENGQIDLVHLQNVLKEIRESH----GSIKIIGTFCAASNLTGILIDIQNVTKILKMFDAIAIWDFASAAPYIPILVNGTYP--------LDAVFFSGHKFPGGVSSPGVLIVKKSIIQA--TKPKRIGGGTVFFVNSTDEWYLKEVEHREEGGTADAVGAVRLAMAVKMKRSIGEDTIKNLESSISHLVLQKIRTIENLVLLGPSVVDHRLPVFSFLIR---DPQSQLFFHHNYISVLLNDLFGIQTRAGCMCAGPYSQKLLGIDEELSQRFVSAIQESPDLDRTHLRRQAEYSQQEFLRPGFTRISFPYFFKMAEVDEILEAIRFIAKHAADFLHLYQVNCETGEWHHQNQRVFHGRRWL-------GHVQFTPTGLKTK---PLA-----------VPEVPDMKKCLEAAKVLAQESSDALNISKIPDGRLAINSEYHELRWFVLPIEVAE 595
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Zebrafish
Match: si:dkey-25g12.4 (si:dkey-25g12.4 [Source:ZFIN;Acc:ZDB-GENE-160113-73]) HSP 1 Score: 53.9138 bits (128), Expect = 6.015e-7 Identity = 47/203 (23.15%), Postives = 90/203 (44.33%), Query Frame = 2 Query: 68 IQIYKNGDFRSTPKKIILKKDNGLFYWRSFLEEITSCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQDYIGFGKISIDSLNDLTMLTSVGSRNLNKRIPQNICMKNVEIKVYKNGDPNTRAIHVKVQPFSRYKMGNLLKSIEEQVFLSSKKPIKRLYKLNGEEIKDITEIENGKSYVVTANEKYEHVKY 676 + +++NGD ++ I+ + + + +FL +T + V+ I P G +V ++ + +YVA GE K DY + ++ ++ V SR + + I ++ I V+ NGD + + + N+L + E+V L + + RL LNG ++ E++N SYV EK+ + Y Sbjct: 12 VTVFRNGDAFYPGRRFIINQRQSVTF-DTFLNTVTRDITAPFGAVRNIYT-PNGHRVVSLQQLMHGQMYVAA-GGERLKKMDYNNITQKPAKKKSE-SIQPVVHSRIIVPARWKRISNESCTINVFINGDILVPPARILIPKHTLASWENVLAMVTEKVSLRTGA-VHRLCMLNGRPLRGAYELQNNHSYVAVGAEKFRSLPY 209
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Xenopus
Match: DCDC2 (doublecortin domain containing 2 [Source:NCBI gene;Acc:100493004]) HSP 1 Score: 68.5514 bits (166), Expect = 2.961e-11 Identity = 70/259 (27.03%), Postives = 120/259 (46.33%), Query Frame = 2 Query: 68 IQIYKNGD-FRSTPKKIILKKDNGLFYWRSFLEEITSCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQDYIGFGKISIDSLNDLTMLTSVG-SR-NLNKRIPQNICMKNVEIKVYKNGDPNTRAIHVKVQPFSRYKMGNLLKSIEEQVFLSSKKPIKRLYKLNGEEIKDITEIENGKSYVVTANEKYEHVKY-----------------GQELPEIKGNRVALKNLQLKQ--SHDGQKNIVDKLM 778 + +++NGD F + +I +K G F FL+++T +Q V+ I G +V ++DD + YVA E F K DY+ G+I +++ L+ + V SR N++ R +N + + + NGD I + + + + +L + E+V L S + RLY L G I++ E+ENG+ YV EK++ + Y LP I G R + +N +Q S G + VD ++ Sbjct: 26 VHVFRNGDPFYRGRRMLIHEKRVGTF--DVFLKDVTGGVQAPFGAVRNIYTPRNGHRVTSLDDLQPGECYVAGGR-ETFKKLDYLHIGEIKRKTVDPLSQVKPVSHSRINVSARFRKNF-QEPCTVFLVANGDTMNPFIRLLIPRKTLEQWELVLALVTEKVKLRSGA-VHRLYTLEGTPIQNGLELENGQFYVAVGREKFKKLPYSDLIFSKASMRRAHGSKASSLPPINGFRKSKENRHERQIKSTGGSSDTVDNMI 279
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Mouse
Match: Dcdc2a (doublecortin domain containing 2a [Source:MGI Symbol;Acc:MGI:2652818]) HSP 1 Score: 57.3806 bits (137), Expect = 5.254e-8 Identity = 51/227 (22.47%), Postives = 110/227 (48.46%), Query Frame = 2 Query: 17 NTEISQKNTLKI*LMNYIQIYKNGDFRSTPKKIILKKDNGLFYWRSFLEEITSCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQDYIGFGKI---SIDSLNDLTMLTSVGSRNLNKRIPQNICMKNVEIKVYKNGDPNTRAIHVKVQPFSRYKMGNLLKSIEEQVFLSSKKPIKRLYKLNGEEIKDITEIENGKSYVVTANEKYEHVKYGQEL 688 N S+ + L ++ + +Y+NGD +++++ + + + FL+E+T +Q V+ I G +++ +D YVA E F K +Y+ G+I ++++N N++ R +++ + I + NGD + A + + + + ++L+ + E++ L S + RLY L G+ ++ E+ENG+ YV +K++ + Y + L Sbjct: 2 NGPSSRSSHLSQPVVKSVLVYRNGDPFFAGRRVVIHEKK-VSSFDVFLKEVTGGVQAPFGAVRNIYTPRTGHRIRKLDQIESGGNYVAGGP-EAFKKLNYLDIGEIKKRPMEAVNTEVKPVIHSRINVSARFRKSL-HEPCTIFLIANGDLISPASRLLIPKKALNQWDHVLQMVTEKITLRSGA-VHRLYTLEGKLVESGAELENGQFYVAVGRDKFKRLPYSELL 224
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Mouse
Match: Dcdc2a (doublecortin domain containing 2a [Source:MGI Symbol;Acc:MGI:2652818]) HSP 1 Score: 51.6026 bits (122), Expect = 4.094e-6 Identity = 53/228 (23.25%), Postives = 114/228 (50.00%), Query Frame = 2 Query: 17 NTEISQKNTLKI*LMNYIQIYKNGDFRSTPKKIILKKDNGLFYWRSFLEEITSCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQDYIGFGKI---SIDSLNDLTMLTSVGSR-NLNKRIPQNICMKNVEIKVYKNGDPNTRAIHVKVQPFSRYKMGNLLKSIEEQVFLSSKKPIKRLYKLNGEEIKDITEIENGKSYVVTANEKYEHVKYGQEL 688 N S+ + L ++ + +Y+NGD +++++ + + + FL+E+T +Q V+ I G +++ +D YVA E F K +Y+ G+I ++++N + + SR N++ R +++ + I + NGD + A + + + + ++L+ + E++ L S + RLY L G+ ++ E+ENG+ YV +K++ + Y + L Sbjct: 2 NGPSSRSSHLSQPVVKSVLVYRNGDPFFAGRRVVIHEKK-VSSFDVFLKEVTGGVQAPFGAVRNIYTPRTGHRIRKLDQIESGGNYVAGGP-EAFKKLNYLDIGEIKKRPMEAVN-TEVKPVIHSRINVSARFRKSL-HEPCTIFLIANGDLISPASRLLIPKKALNQWDHVLQMVTEKITLRSGA-VHRLYTLEGKLVESGAELENGQFYVAVGRDKFKRLPYSELL 224
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. UniProt/SwissProt
Match: sp|P99177|CSD_STAAN (Probable cysteine desulfurase OS=Staphylococcus aureus (strain N315) OX=158879 GN=csd PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.005e-29 Identity = 109/388 (28.09%), Postives = 182/388 (46.91%), Query Frame = 2 Query: 926 GERLAVYCDYTASGR-PLRFIEEFLTKEVLPEY-----SNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSH---RKPPIIVTGPFEHHSNLLPWRKIA----YSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAKRIPIFSFLIRCEIERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGP 2050 G+RLA Y D TA+ + P++ + VL +Y SN H L T+ ARE + R NA + +IFT G T +IN +A++ + IV EHH+N++PW+++A ++ I + GEL+IED++ + +++ I + SNV G + DV ++ I H++ + D A A P++++DM MN D FS HK + GP GVL KR L E P GG + FV + + D+ + E GTP I +I + + I + +H+ E+ L +A+ ++ + + I G K +R + +F ++ +H H + + + D G+ R+G CA P Sbjct: 24 GKRLA-YLDSTATSQTPMQVLN------VLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFT-RGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTI---------NDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQE----MN-----ADFYSFSGHKML-GPTGIGVLFGKRELLQKME--PIEFGGDMIDFVSKYDATW-ADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQD---------VHPHDVATAV-DTEGVAVRAGHHCAQP 371
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. UniProt/SwissProt
Match: sp|P63518|CSD_STAAM (Probable cysteine desulfurase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=csd PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.005e-29 Identity = 109/388 (28.09%), Postives = 182/388 (46.91%), Query Frame = 2 Query: 926 GERLAVYCDYTASGR-PLRFIEEFLTKEVLPEY-----SNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSH---RKPPIIVTGPFEHHSNLLPWRKIA----YSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAKRIPIFSFLIRCEIERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGP 2050 G+RLA Y D TA+ + P++ + VL +Y SN H L T+ ARE + R NA + +IFT G T +IN +A++ + IV EHH+N++PW+++A ++ I + GEL+IED++ + +++ I + SNV G + DV ++ I H++ + D A A P++++DM MN D FS HK + GP GVL KR L E P GG + FV + + D+ + E GTP I +I + + I + +H+ E+ L +A+ ++ + + I G K +R + +F ++ +H H + + + D G+ R+G CA P Sbjct: 24 GKRLA-YLDSTATSQTPMQVLN------VLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFT-RGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTI---------NDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQE----MN-----ADFYSFSGHKML-GPTGIGVLFGKRELLQKME--PIEFGGDMIDFVSKYDATW-ADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQD---------VHPHDVATAV-DTEGVAVRAGHHCAQP 371
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. UniProt/SwissProt
Match: sp|Q8NXH0|CSD_STAAW (Probable cysteine desulfurase OS=Staphylococcus aureus (strain MW2) OX=196620 GN=csd PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.179e-28 Identity = 109/388 (28.09%), Postives = 182/388 (46.91%), Query Frame = 2 Query: 926 GERLAVYCDYTASGR-PLRFIEEFLTKEVLPEY-----SNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSH---RKPPIIVTGPFEHHSNLLPWRKIA----YSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAKRIPIFSFLIRCEIERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGP 2050 G+RLA Y D TA+ + P++ + VL +Y SN H L T+ ARE + R NA + +IFT G T +IN +A++ + IV EHH+N++PW+++A ++ I + GEL+IED++ + +++ I + SNV G + DV ++ I H++ + D A A P++++DM MN D FS HK + GP GVL KR L E P GG + FV + + D+ + E GTP I +I + + I + +H+ E+ L +A+ ++ + + I G K +R + +F ++ +H H + + + D G+ R+G CA P Sbjct: 24 GKRLA-YLDSTATSQTPVQVLN------VLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFT-RGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTI---------NDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQE----MN-----ADFYSFSGHKML-GPTGIGVLFGKRELLQKME--PIEFGGDMIDFVSKYDATW-ADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQD---------VHPHDVATAV-DTEGVAVRAGHHCAQP 371
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. UniProt/SwissProt
Match: sp|Q6GB11|CSD_STAAS (Probable cysteine desulfurase OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=csd PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.179e-28 Identity = 109/388 (28.09%), Postives = 182/388 (46.91%), Query Frame = 2 Query: 926 GERLAVYCDYTASGR-PLRFIEEFLTKEVLPEY-----SNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSH---RKPPIIVTGPFEHHSNLLPWRKIA----YSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAKRIPIFSFLIRCEIERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGP 2050 G+RLA Y D TA+ + P++ + VL +Y SN H L T+ ARE + R NA + +IFT G T +IN +A++ + IV EHH+N++PW+++A ++ I + GEL+IED++ + +++ I + SNV G + DV ++ I H++ + D A A P++++DM MN D FS HK + GP GVL KR L E P GG + FV + + D+ + E GTP I +I + + I + +H+ E+ L +A+ ++ + + I G K +R + +F ++ +H H + + + D G+ R+G CA P Sbjct: 24 GKRLA-YLDSTATSQTPVQVLN------VLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFT-RGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTI---------NDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQE----MN-----ADFYSFSGHKML-GPTGIGVLFGKRELLQKME--PIEFGGDMIDFVSKYDATW-ADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQD---------VHPHDVATAV-DTEGVAVRAGHHCAQP 371
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. UniProt/SwissProt
Match: sp|Q6GIH2|CSD_STAAR (Probable cysteine desulfurase OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=csd PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.179e-28 Identity = 109/388 (28.09%), Postives = 182/388 (46.91%), Query Frame = 2 Query: 926 GERLAVYCDYTASGR-PLRFIEEFLTKEVLPEY-----SNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSH---RKPPIIVTGPFEHHSNLLPWRKIA----YSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAKRIPIFSFLIRCEIERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGP 2050 G+RLA Y D TA+ + P++ + VL +Y SN H L T+ ARE + R NA + +IFT G T +IN +A++ + IV EHH+N++PW+++A ++ I + GEL+IED++ + +++ I + SNV G + DV ++ I H++ + D A A P++++DM MN D FS HK + GP GVL KR L E P GG + FV + + D+ + E GTP I +I + + I + +H+ E+ L +A+ ++ + + I G K +R + +F ++ +H H + + + D G+ R+G CA P Sbjct: 24 GKRLA-YLDSTATSQTPVQVLN------VLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFT-RGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTI---------NDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQE----MN-----ADFYSFSGHKML-GPTGIGVLFGKRELLQKME--PIEFGGDMIDFVSKYDATW-ADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQD---------VHPHDVATAV-DTEGVAVRAGHHCAQP 371
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. TrEMBL
Match: A0A504YJA7 (tRNA 2-thiocytidine biosynthesis protein TtcA OS=Fasciola gigantica OX=46835 GN=FGIG_05804 PE=4 SV=1) HSP 1 Score: 618.616 bits (1594), Expect = 0.000e+0 Identity = 298/619 (48.14%), Postives = 406/619 (65.59%), Query Frame = 2 Query: 836 AENKISCYIDLFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAKRIPIFSFLIR-------CEIERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGPYGMDLLGIDEKLAVKYLSLLVGKNMNEIEHLTCIPDFPKRDIFKPGFVRINLPYFINQSEVNFILDAILFVAEHGYKFLPYYQFKPDSSEWRHIDHKTTTKVKKLEEISYKHGFMDWNYDTMKTKTNYPASFAGTIAEAFNKMNQIVNNPKY-----LQDDSYLFEECTDGLRWFMLPSEAAKILW---DSPSISKPSKCIFTPGTI 2647 AEN S + L YI NIIGR+ IF+GPFG+R +YCD+TAS + L FIE+F+ EVLP Y NTHTT S+QTT FRHEAR+II + +D D VIF GSG TGAI+KL + + +PPI++ GPFEHHSN+LPWR +A+ + R + G + +E LES+L + + +LI +AASNVTGIL DVN S + H+Y G WDYA+A PY++IDMNPVV G + VYKDAVYFSMHKFIGGPQ+PGVL+ KR+LF + E P GGGTVFFV R+ ++LK++EEREEGGTP IV SIR+GLV QLK+++T E + ERE+ V W +L +N+++LGG +A R+PI S ++R + R L+LHH+F+ SLLNDLFG+Q+R GCACAGPY MDLLGIDE LA Y LVG + E + D +R++ +PGF R++LP+F +E +FILDAI FVA HG+ FLP Y++ P ++EW H H + K L ++Y G M W+ ++T+ P F + A+ ++ + V + + DD+ F+E T LRWF+LPSEAA + + ++S P+ + PG++ Sbjct: 93 AENNASDPLHLIGYINENIIGRNKIFRGPFGDRQTIYCDWTASAKSLFFIEDFINSEVLPNYGNTHTTTNVTSLQTTMFRHEARDIIRNAVRGSDEDAVIFVGSGCTGAIHKLIHNLHLEQPPIVIVGPFEHHSNILPWRHLAHKVCRASTDSSGTVSLESLESLLRVESVVAQELGCKLIVCMAAASNVTGILVDVNAFSSLTHRYGGLAFWDYATAAPYVKIDMNPVVTGPDHDYVYKDAVYFSMHKFIGGPQTPGVLVAKRSLFKAGEVQPSGCGGGTVFFVRRDGQVYLKEVEEREEGGTPAIVESIRAGLVMQLKEAVTCEAIMEREEQHVRRIWDRLADCRNIIVLGGKEAPRLPIISVVVRHSYPIPSTDNSRASCLFLHHNFVASLLNDLFGVQARGGCACAGPYAMDLLGIDEALAKLYEETLVGCRL-ETHKRDGLLDNSQREVIRPGFTRVSLPFFTPDAEADFILDAIKFVATHGWAFLPLYRYSPSTAEWVHRQHDPSRDRKWLGNVNYTDGKMTWSSTRLRTEMPAPQDFEACMKAAYEELCRAVKTIDFSAASPVPDDTACFDEPTRELRWFLLPSEAAAQIRNEINQLAVSNPNPSPWHPGSL 710
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. TrEMBL
Match: A0A4E0RJU7 (tRNA 2-thiocytidine biosynthesis protein TtcA OS=Fasciola hepatica OX=6192 GN=D915_001180 PE=4 SV=1) HSP 1 Score: 617.461 bits (1591), Expect = 0.000e+0 Identity = 297/619 (47.98%), Postives = 405/619 (65.43%), Query Frame = 2 Query: 836 AENKISCYIDLFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAKRIPIFSFLIR-------CEIERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGPYGMDLLGIDEKLAVKYLSLLVGKNMNEIEHLTCIPDFPKRDIFKPGFVRINLPYFINQSEVNFILDAILFVAEHGYKFLPYYQFKPDSSEWRHIDHKTTTKVKKLEEISYKHGFMDWNYDTMKTKTNYPASFAGTIAEAFNKMNQIVNNPKY-----LQDDSYLFEECTDGLRWFMLPSEAAKILW---DSPSISKPSKCIFTPGTI 2647 AEN S + L YI NIIGR+ IF+GPFG+R +YCD+TAS + L FIE+F++ EVLP Y NTHTT S+QTT FRHEAR+II + +D D VIF GSG TGAI+KL + + +PPI++ GPFEHHSN+LPWR +A+ + R + G + +E LES+L + + +LI +AASNVTGIL DVN S + H+Y G WDYA+A PY++IDMNPVV G + VYKDAVYFSMHKFIGGPQ+PGVL+ KR+LF + E P GGGTVFFV R+ ++LK++EEREEGGTP IV SIR+GLV QLK+++T E + ERE+ V W +L +N+++LGG +A R+PI S ++R + R L+LHH+F+ SLLNDLFG+Q+R GCACAGPY MDLLGIDE LA Y LVG + E + D + ++ +PGF R++LP+F +E +FILDAI FVA HG+ FLP Y + P ++EW H H + K L ++Y G M W+ ++T+ P F + A+ ++ + V + + DD+ F+E T LRWF+LPSEAA + + ++S P+ + PG++ Sbjct: 93 AENNASDPLHLIGYINENIIGRNKIFRGPFGDRQTIYCDWTASAKSLFFIEDFISSEVLPNYGNTHTTTNVTSLQTTMFRHEARDIIRNAVRGSDEDAVIFVGSGCTGAIHKLIHNLHLEQPPIVIVGPFEHHSNILPWRHLAHKVCRASTDSSGTVSLESLESLLRVESVVAQELGCKLIVCMAAASNVTGILVDVNAFSSLTHRYGGLAFWDYATAAPYVKIDMNPVVTGPDHDYVYKDAVYFSMHKFIGGPQTPGVLVAKRSLFKAGEVQPSGCGGGTVFFVRRDGQVYLKEVEEREEGGTPAIVESIRAGLVMQLKEAVTCEAIMEREEQHVRRIWDRLADCRNIIVLGGKEAPRLPIISVVVRHSYPIPSTDNSRASCLFLHHNFVASLLNDLFGVQARGGCACAGPYAMDLLGIDEALAKLYEETLVGCRL-ETHKRDGMLDSSQHEVIRPGFTRVSLPFFTPDAEADFILDAIKFVATHGWAFLPLYSYNPSTAEWVHRQHDPSRDRKWLGNVNYTDGKMTWSSTRLRTEMPAPQDFEACMKAAYEELCRAVKTIDFSAASPVPDDTACFDEPTRELRWFLLPSEAAAQIRNEINQLAVSNPNPSPWHPGSL 710
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. TrEMBL
Match: A0A4S2M5T2 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_002453 PE=4 SV=1) HSP 1 Score: 603.979 bits (1556), Expect = 0.000e+0 Identity = 287/587 (48.89%), Postives = 390/587 (66.44%), Query Frame = 2 Query: 866 LFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAKRIPIFSFLIRCEI----------ERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGPYGMDLLGIDEKLAVKYLSLLVGKNMNEIEHLTCIPDFPKRDIFKPGFVRINLPYFINQSEVNFILDAILFVAEHGYKFLPYYQFKPDSSEWRHIDHKTTTKVKKLEEISYKHGFMDWNYDTMKTKTNYPASFAGTIAEAFNKMNQIVNNPKY-----LQDDSYLFEECTDGLRWFMLPSEAA 2581 L YI NI+G++FIF+GPFG+R VYCD+TASGR L FIE F++ EVLP Y NTHTT + S+QTT FRHEAR+II + A+++D VIF GSG TGA++KL + + +PPI++ GPFEHHSN+LPWR +A+ + R + ++ G + ++ LES+L + +LI +AASNVTGI+ DV+ S + H+Y G WDYA+A PY +IDMNPV G +R VYKDAVYFSMHKFIGGPQ+PGVL+ KR LF + E P GGGTVFFV R + ++LKD+EEREEGGTP IV SIR+GLV QLK+++T + + ERE LV W +L +N+++LGG +A R+PI S ++R L+LHH+F+ +LLNDLFGIQ+R GCACAGPY MDLLGIDE LA Y LVG ++ + D P+ ++ +PGF RI++P+FI +EV+FILDA+ FVA HG+ FLP Y++ + EW H H+ + K L + Y G M W+ + T+ P S+ + A +M + V + + DD+ F+E + LRWF+LPSEAA Sbjct: 87 LMNYINDNIVGKEFIFRGPFGDRKTVYCDWTASGRALAFIENFISMEVLPTYGNTHTTTSVTSLQTTMFRHEARDIIRNAVRASEDDAVIFVGSGCTGAVHKLIHNLHLEQPPIVIVGPFEHHSNILPWRHLAFKVCRAEADQSGTVSLKSLESLLQVESVSAQEMGCKLIVCMAAASNVTGIMVDVDAFSCLTHRYGGLAFWDYATAAPYTKIDMNPVRTGPDRDLVYKDAVYFSMHKFIGGPQTPGVLVAKRRLFKAGEAQPDGCGGGTVFFVRRNAQVYLKDVEEREEGGTPAIVESIRAGLVMQLKEAVTCDAIMEREDVLVRRIWDRLADCRNIIVLGGKEAPRLPIISVVVRHPYPSVGTAGGPKAETRCLFLHHNFVSALLNDLFGIQARGGCACAGPYAMDLLGIDEALAKLYEETLVGCPLDAYKRARHY-DTPQLEVIRPGFTRISVPFFIPDAEVDFILDALKFVANHGWIFLPLYRYISSTGEWSHRQHEISRDRKWLRNVDYSEGRMSWSSARITTEMPVPESYEACLRAAHEEMCRTVRLVDFSTSFPVPDDTISFDESSRELRWFLLPSEAA 672
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. TrEMBL
Match: A0A4S2M6C0 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_002453 PE=4 SV=1) HSP 1 Score: 603.594 bits (1555), Expect = 0.000e+0 Identity = 287/587 (48.89%), Postives = 390/587 (66.44%), Query Frame = 2 Query: 866 LFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAKRIPIFSFLIRCEI----------ERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGPYGMDLLGIDEKLAVKYLSLLVGKNMNEIEHLTCIPDFPKRDIFKPGFVRINLPYFINQSEVNFILDAILFVAEHGYKFLPYYQFKPDSSEWRHIDHKTTTKVKKLEEISYKHGFMDWNYDTMKTKTNYPASFAGTIAEAFNKMNQIVNNPKY-----LQDDSYLFEECTDGLRWFMLPSEAA 2581 L YI NI+G++FIF+GPFG+R VYCD+TASGR L FIE F++ EVLP Y NTHTT + S+QTT FRHEAR+II + A+++D VIF GSG TGA++KL + + +PPI++ GPFEHHSN+LPWR +A+ + R + ++ G + ++ LES+L + +LI +AASNVTGI+ DV+ S + H+Y G WDYA+A PY +IDMNPV G +R VYKDAVYFSMHKFIGGPQ+PGVL+ KR LF + E P GGGTVFFV R + ++LKD+EEREEGGTP IV SIR+GLV QLK+++T + + ERE LV W +L +N+++LGG +A R+PI S ++R L+LHH+F+ +LLNDLFGIQ+R GCACAGPY MDLLGIDE LA Y LVG ++ + D P+ ++ +PGF RI++P+FI +EV+FILDA+ FVA HG+ FLP Y++ + EW H H+ + K L + Y G M W+ + T+ P S+ + A +M + V + + DD+ F+E + LRWF+LPSEAA Sbjct: 87 LMNYINDNIVGKEFIFRGPFGDRKTVYCDWTASGRALAFIENFISMEVLPTYGNTHTTTSVTSLQTTMFRHEARDIIRNAVRASEDDAVIFVGSGCTGAVHKLIHNLHLEQPPIVIVGPFEHHSNILPWRHLAFKVCRAEADQSGTVSLKSLESLLQVESVSAQEMGCKLIVCMAAASNVTGIMVDVDAFSCLTHRYGGLAFWDYATAAPYTKIDMNPVRTGPDRDLVYKDAVYFSMHKFIGGPQTPGVLVAKRRLFKAGEAQPDGCGGGTVFFVRRNAQVYLKDVEEREEGGTPAIVESIRAGLVMQLKEAVTCDAIMEREDVLVRRIWDRLADCRNIIVLGGKEAPRLPIISVVVRHPYPSVGTAGGPKAETRCLFLHHNFVSALLNDLFGIQARGGCACAGPYAMDLLGIDEALAKLYEETLVGCPLDAYKRARHY-DTPQLEVIRPGFTRISVPFFIPDAEVDFILDALKFVANHGWIFLPLYRYISSTGEWSHRQHEISRDRKWLRNVDYSEGRMSWSSARITTEMPVPESYEACLRAAHEEMCRTVRLVDFSTSFPVPDDTISFDESSRELRWFLLPSEAA 672
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. TrEMBL
Match: A0A4S2MAB2 (Aminotran_5 domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_002453 PE=4 SV=1) HSP 1 Score: 603.594 bits (1555), Expect = 0.000e+0 Identity = 287/587 (48.89%), Postives = 390/587 (66.44%), Query Frame = 2 Query: 866 LFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAKRIPIFSFLIRCEI----------ERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGPYGMDLLGIDEKLAVKYLSLLVGKNMNEIEHLTCIPDFPKRDIFKPGFVRINLPYFINQSEVNFILDAILFVAEHGYKFLPYYQFKPDSSEWRHIDHKTTTKVKKLEEISYKHGFMDWNYDTMKTKTNYPASFAGTIAEAFNKMNQIVNNPKY-----LQDDSYLFEECTDGLRWFMLPSEAA 2581 L YI NI+G++FIF+GPFG+R VYCD+TASGR L FIE F++ EVLP Y NTHTT + S+QTT FRHEAR+II + A+++D VIF GSG TGA++KL + + +PPI++ GPFEHHSN+LPWR +A+ + R + ++ G + ++ LES+L + +LI +AASNVTGI+ DV+ S + H+Y G WDYA+A PY +IDMNPV G +R VYKDAVYFSMHKFIGGPQ+PGVL+ KR LF + E P GGGTVFFV R + ++LKD+EEREEGGTP IV SIR+GLV QLK+++T + + ERE LV W +L +N+++LGG +A R+PI S ++R L+LHH+F+ +LLNDLFGIQ+R GCACAGPY MDLLGIDE LA Y LVG ++ + D P+ ++ +PGF RI++P+FI +EV+FILDA+ FVA HG+ FLP Y++ + EW H H+ + K L + Y G M W+ + T+ P S+ + A +M + V + + DD+ F+E + LRWF+LPSEAA Sbjct: 87 LMNYINDNIVGKEFIFRGPFGDRKTVYCDWTASGRALAFIENFISMEVLPTYGNTHTTTSVTSLQTTMFRHEARDIIRNAVRASEDDAVIFVGSGCTGAVHKLIHNLHLEQPPIVIVGPFEHHSNILPWRHLAFKVCRAEADQSGTVSLKSLESLLQVESVSAQEMGCKLIVCMAAASNVTGIMVDVDAFSCLTHRYGGLAFWDYATAAPYTKIDMNPVRTGPDRDLVYKDAVYFSMHKFIGGPQTPGVLVAKRRLFKAGEAQPDGCGGGTVFFVRRNAQVYLKDVEEREEGGTPAIVESIRAGLVMQLKEAVTCDAIMEREDVLVRRIWDRLADCRNIIVLGGKEAPRLPIISVVVRHPYPSVGTAGGPKAETRCLFLHHNFVSALLNDLFGIQARGGCACAGPYAMDLLGIDEALAKLYEETLVGCPLDAYKRARHY-DTPQLEVIRPGFTRISVPFFIPDAEVDFILDALKFVANHGWIFLPLYRYISSTGEWSHRQHEISRDRKWLRNVDYSEGRMSWSSARITTEMPVPESYEACLRAAHEEMCRTVRLVDFSTSFPVPDDTISFDESSRELRWFLLPSEAA 672
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Cavefish
Match: ENSAMXT00000050955.1 (pep primary_assembly:Astyanax_mexicanus-2.0:9:19696740:19722139:-1 gene:ENSAMXG00000037587.1 transcript:ENSAMXT00000050955.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 58.5362 bits (140), Expect = 1.851e-8 Identity = 52/210 (24.76%), Postives = 94/210 (44.76%), Query Frame = 2 Query: 68 IQIYKNGD-FRSTPKKIILKKDNGLFYWRSFLEEITSCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQDYIGFGKISIDSLNDLTMLTSVGSRNL-NKRIPQNICMKNVEIKVYKNGDPNTRAIHVKVQPFSRYKMGNLLKSIEEQVFLSSKKPIKRLYKLNGEEIKDITEIENGKSYVVTANEKYEHVKYGQELP 691 I +Y+NGD F K +I ++ F SFL +T ++ V+ I G ++++++ F + YVA E DY+ + + + V S+ + R +NI + I V+ NGD + + ++ ++L + E+V L S + RL+ L+G + E++N + YV EK+ H Y Q +P Sbjct: 19 ILVYRNGDAFYPGKKFVINQRQTATF--ESFLGSVTRGIEAPFGAVRHIYTPREGHRIRSLEQFSHGERYVAA-GAERLKNIDYLHITPNRPQRMKNKQIRPVVHSKIIVPARWRKNI-DEPCTINVFANGDILVPPARILLPKYTLNSWESVLAMVTEKVHLRSGA-VHRLFTLDGTPLLGTAELKNNQYYVAVGMEKFRHKPYVQNIP 223
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Nematostella
Match: EDO49825 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RG26]) HSP 1 Score: 469.929 bits (1208), Expect = 3.450e-150 Identity = 257/565 (45.49%), Postives = 354/565 (62.65%), Query Frame = 2 Query: 974 LRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAKRIPIFSFLIRCEIERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGPYGMDLLGIDEKLAVKYLSLLVGKNMNEIEHLTCIPDFPKRDIFKPGFVRINLPYFINQSEVNFILDAILFVAEHGYKFLPYYQFKPDSSEWRHIDHKTTTKVKKLEEISYKHGFMDWNYDTMKTKTNYPASFAG------TIAEAFNKMNQIVNNPK----YLQDDSYLFEECTDGLRWFMLPSEAAKILWDSPSISKPSKCIFTP 2638 LRFIE+++ KEVLP Y NTHTT T S+QTT +RHEAR+II + NA + D VIFTGSG T A++KL + + ++PPI+ GP+EHHSNLLPW++ I I + G +D+ DL+ L + RQLIG F+AASNVTGIL D N ++ +H++ LWDYA+AGPY+EI+MNPV+ ++ VYKDA++ S HKFIGG +PG+L+ K+ LF + GGG+VFFV SH +LK+ E REEGGTP IV SIR+GLVFQLK+++ +++ +E + A +NLV+LG T R+P+FSFL+R + L+LHH++ C+LLNDLFGIQ+R GCACAGPY DLLGIDEKLA ++ +LL+ + + HL ++ + +I +PGFVR+N PYF+++ F+ A+L VAE G+K LP Y F P++ EWRH HK K L I+Y G + YP+S AG + E + +I N + L D S E + LRWF+LPSE+A I+ S P + F P Sbjct: 1 LRFIEDYIRKEVLPHYGNTHTTTTVTSLQTTLYRHEARDIIRNAVNAGEGDAVIFTGSGCTAAVHKLIHALHLQQPPIVFVGPYEHHSNLLPWKEAGAEIVWISQDGQGVVDVNDLDQKLQTSI----SSGRQLIGCFAAASNVTGILVDTNSITACLHRHGALALWDYATAGPYIEINMNPVITSKDQSLVYKDAIFISTHKFIGGVGTPGILVAKKKLFRNPVPSGG--GGGSVFFVTENSHRYLKETEMREEGGTPAIVESIRAGLVFQLKEAVGHDVIFAKETEMCRKALDAWSDLENLVLLGSTTPSRLPVFSFLVRHPVSG---LFLHHNYTCALLNDLFGIQARGGCACAGPYAQDLLGIDEKLAKRFEALLLEDSRLDRGHLRRYNEYSEHEILRPGFVRLNFPYFMSEDSAAFVRKAVLMVAESGWKLLPQYMFNPETGEWRHRKHKVFHDRKWLGSINYSTG-----------ELTYPSSSAGYEGLPKDLQECLSNAEEIFRNAEKMSTSLSDQSLFLGEEAEKLRWFVLPSESAVII--SGQTHAPRRPPFVP 543
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Nematostella
Match: EDO35942 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SK32]) HSP 1 Score: 431.795 bits (1109), Expect = 1.856e-142 Identity = 232/479 (48.43%), Postives = 309/479 (64.51%), Query Frame = 2 Query: 866 LFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTM----SHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAKRIPIFSFLIRCEIERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGPYGMDLLGIDEKLAVKYLSLLVGKNMNEIEHLTCIPDFPKRDIFKPGFVRINLPYFINQSEVNFILDAILFVAEHGYKFLP 2290 L ++I N+IG D +F GP+G++ VYCDYTASG+PLRFIE+++ V Y+NTHTT T S QTT FR+EAREII + NA+ D VIF GSG T AI+KL + + K + GPFEHHSN+LPW++ I RI+ N G +D+ LE ++F + + + FSAASNVTGILTD VS + HKY G WDYASA PY+ I+MN G Y DAV S HKF+GG +PGVLI K+++F + P GGGTV FV R++HL+LKDIE REEGGTP IV SIR+G+VFQLK S+ ++ +RE L A+ +K+ L ILG KA+R+PIFSF++ ++ LHH+F+ LLNDL+GIQ+R GCACAGPY DLLG+ E LA ++ + + +E +P +I KPGF RINLPYF++ V+++L+A+ VA HG+K LP Sbjct: 4 LLEFINANVIGWDTVFNGPYGKKQVVYCDYTASGKPLRFIEDYIQNYVYAFYANTHTTTTTTSRQTTKFRNEAREIIKKCVNASAEDRVIFVGSGTTSAIHKLIHVLELEGEKAKKTAVFVGPFEHHSNILPWKETGAKIVRIRDNDHGTVDMAMLE----REFKVNRHKDYTIFTAFSAASNVTGILTDTKAVSEMCHKYGGLAFWDYASASPYITINMNATPTG------YMDAVVLSPHKFVGGVGTPGVLIAKKSVF--TNKVPDGCGGGTVLFVTRDTHLYLKDIEAREEGGTPAIVESIRAGMVFQLKQSVGPSLIEQREDELCRKAFEVWRKNSCLEILGSDKARRLPIFSFIV---YHKDSGKLLHHNFVSVLLNDLYGIQARGGCACAGPYAWDLLGVSESLAKQFSWFMEEHHGENVEAKLQVP----LEIMKPGFARINLPYFMDDETVHYVLEAVDMVATHGWKLLP 463
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Nematostella
Match: EDO49134 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RGY9]) HSP 1 Score: 429.098 bits (1102), Expect = 1.789e-141 Identity = 230/482 (47.72%), Postives = 308/482 (63.90%), Query Frame = 2 Query: 866 LFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGR---PLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTM----SHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAKRIPIFSFLIRCEIERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGPYGMDLLGIDEKLAVKYLSLLVGKNMNEIEHLTCIPDFPKRDIFKPGFVRINLPYFINQSEVNFILDAILFVAEHGYKFLP 2290 + Y++ N+IG D +F+GP+G++ +YCDYTASGR P R + L T QTT+FRHEAREII NA D+DVVIFTGSG TGAI+KL + + K ++ GPFEHHSN+LPW++ I RI+ K G +D + LE+ L K + S ++ FSAASNVTGI+TD +++ + H+Y WDYA+A PYL+IDMN G YKDAV+ S HKF GGP +PGVLI K++LF + P GGGTV FV R++HL+L+DIE REEGGTP IV SIR+GLVFQLK+SI S+++ RE+ L A+ K + N+ ILG + A+R+PIFSFL+ + LHH+F+ LLNDL+GIQ+R GCACAGPY DLLGIDE +A K+ L ++ E + C +I KPGF R+NLP+F++ V+F+L+A+ VA HG+K LP Sbjct: 4 MLDYLDENVIGGDTLFEGPYGQKKVIYCDYTASGRRHSPDR-------RRTLDMKQGEVYKYTTFFRQTTHFRHEAREIIKECVNATDDDVVIFTGSGTTGAIHKLIHALEMGGDKAKTTVVFVGPFEHHSNILPWKESGAKIVRIRDTKQGTVDQDMLETNL-KYY---SRRGMHMLAAFSAASNVTGIMTDTVLIAELCHRYGALSFWDYATAAPYLKIDMNASKLG------YKDAVFLSPHKFAGGPGTPGVLIAKKSLF--TNPIPGGCGGGTVLFVTRDTHLYLQDIESREEGGTPAIVESIRAGLVFQLKESIGSDLIEAREEELCRKAFKIWKANPNISILGSSSARRLPIFSFLV---YHPDSGKLLHHNFVSVLLNDLYGIQARGGCACAGPYAQDLLGIDESVAQKFTWFLESHESDDGE-VHCKEPL---EIMKPGFARLNLPFFMDDETVHFVLEAVDMVATHGWKLLP 459
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Nematostella
Match: EDO26022 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7TD33]) HSP 1 Score: 74.7146 bits (182), Expect = 8.679e-16 Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 2 Query: 1085 REIIHRSCNANDNDVVIFTGSGATGAINKLAYTM----SHRKPPIIVTGPFEHHSNLLPWRK 1258 +EII NA D+DVVIFTGSG TGAI+KL + + K ++ GPFEHHSN+LPW++ Sbjct: 78 KEIIKECVNATDDDVVIFTGSGTTGAIHKLIHALEMGGDKAKTTVVFVGPFEHHSNILPWKE 139
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Planmine SMEST
Match: SMESG000040454.1 (SMESG000040454.1) HSP 1 Score: 1417.52 bits (3668), Expect = 0.000e+0 Identity = 687/687 (100.00%), Postives = 687/687 (100.00%), Query Frame = 2 Query: 59 MNYIQIYKNGDFRSTPKKIILKKDNGLFYWRSFLEEITSCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQDYIGFGKISIDSLNDLTMLTSVGSRNLNKRIPQNICMKNVEIKVYKNGDPNTRAIHVKVQPFSRYKMGNLLKSIEEQVFLSSKKPIKRLYKLNGEEIKDITEIENGKSYVVTANEKYEHVKYGQELPEIKGNRVALKNLQLKQSHDGQKNIVDKLMDGIMQNITQRMKMNGNKMKAENKISCYIDLFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAKRIPIFSFLIRCEIERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGPYGMDLLGIDEKLAVKYLSLLVGK 2119 MNYIQIYKNGDFRSTPKKIILKKDNGLFYWRSFLEEITSCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQDYIGFGKISIDSLNDLTMLTSVGSRNLNKRIPQNICMKNVEIKVYKNGDPNTRAIHVKVQPFSRYKMGNLLKSIEEQVFLSSKKPIKRLYKLNGEEIKDITEIENGKSYVVTANEKYEHVKYGQELPEIKGNRVALKNLQLKQSHDGQKNIVDKLMDGIMQNITQRMKMNGNKMKAENKISCYIDLFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAKRIPIFSFLIRCEIERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGPYGMDLLGIDEKLAVKYLSLLVGK Sbjct: 1 MNYIQIYKNGDFRSTPKKIILKKDNGLFYWRSFLEEITSCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQDYIGFGKISIDSLNDLTMLTSVGSRNLNKRIPQNICMKNVEIKVYKNGDPNTRAIHVKVQPFSRYKMGNLLKSIEEQVFLSSKKPIKRLYKLNGEEIKDITEIENGKSYVVTANEKYEHVKYGQELPEIKGNRVALKNLQLKQSHDGQKNIVDKLMDGIMQNITQRMKMNGNKMKAENKISCYIDLFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSKNLVILGGTKAKRIPIFSFLIRCEIERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGPYGMDLLGIDEKLAVKYLSLLVGK 687
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Planmine SMEST
Match: SMESG000040454.1 (SMESG000040454.1) HSP 1 Score: 1228.39 bits (3177), Expect = 0.000e+0 Identity = 596/596 (100.00%), Postives = 596/596 (100.00%), Query Frame = 2 Query: 59 MNYIQIYKNGDFRSTPKKIILKKDNGLFYWRSFLEEITSCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQDYIGFGKISIDSLNDLTMLTSVGSRNLNKRIPQNICMKNVEIKVYKNGDPNTRAIHVKVQPFSRYKMGNLLKSIEEQVFLSSKKPIKRLYKLNGEEIKDITEIENGKSYVVTANEKYEHVKYGQELPEIKGNRVALKNLQLKQSHDGQKNIVDKLMDGIMQNITQRMKMNGNKMKAENKISCYIDLFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVE 1846 MNYIQIYKNGDFRSTPKKIILKKDNGLFYWRSFLEEITSCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQDYIGFGKISIDSLNDLTMLTSVGSRNLNKRIPQNICMKNVEIKVYKNGDPNTRAIHVKVQPFSRYKMGNLLKSIEEQVFLSSKKPIKRLYKLNGEEIKDITEIENGKSYVVTANEKYEHVKYGQELPEIKGNRVALKNLQLKQSHDGQKNIVDKLMDGIMQNITQRMKMNGNKMKAENKISCYIDLFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVE Sbjct: 1 MNYIQIYKNGDFRSTPKKIILKKDNGLFYWRSFLEEITSCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQDYIGFGKISIDSLNDLTMLTSVGSRNLNKRIPQNICMKNVEIKVYKNGDPNTRAIHVKVQPFSRYKMGNLLKSIEEQVFLSSKKPIKRLYKLNGEEIKDITEIENGKSYVVTANEKYEHVKYGQELPEIKGNRVALKNLQLKQSHDGQKNIVDKLMDGIMQNITQRMKMNGNKMKAENKISCYIDLFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVE 596
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Planmine SMEST
Match: SMESG000015154.1 (SMESG000015154.1) HSP 1 Score: 752.666 bits (1942), Expect = 0.000e+0 Identity = 353/599 (58.93%), Postives = 452/599 (75.46%), Query Frame = 2 Query: 857 YIDLFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVKRNLFYSSETDPHCPGGGTVFFVGRESHLFLKDIEEREEGGTPEIVGSIRSGLVFQLKDSITSEILHEREKYLVEFAWSKLKKSK-NLVILGGTKAKRIPIFSFLIRCEIERNEYLYLHHHFICSLLNDLFGIQSRSGCACAGPYGMDLLGIDEKLAVKYLSLLVGKNMNEIEHLTCIPDFPKRDIFKPGFVRINLPYFINQSEVNFILDAILFVAEHGYKFLPYYQFKPDSSEWRHIDHKTTTKVKKLEEISYKHGFMDWNYDTMKTKTNYPASFAGTIAEAFNKMNQIVNNPKYLQDDSYLFEECTDGLRWFMLPSEAAKILWDSPSISKPSKCIFTPGTIA 2650 YIDLF YIE NIIGRD F+GPFG+RL +YCDYTASGR L+FIEEF+ EVLPEY+NTHTTNT S+QTT FRHEAR+II SC A + DV++F GSG TGAI+KL + ++ KPPI++ GPFEHHSNLLPWRK+A+SIHR++INK G LDIE LES+L Q + S ++ LI F+A SNVTGI+++VN++S ++HKY G V WDYA+ PYL IDMNP++ +R VYKDA+YFSMHKFIGG QSPG+LI KR+LF E P GGGTVFFV RE+ ++LKD EEREEGGTP+IVG +R+GL FQLK++ T++ + +RE Y+V++AWSKL +S NL+ILGG++ RIPIFSFLIR EI NEYL+LHH+F+CSLLNDLFGIQSRSGCACAGPY MDL+GI+E+LA ++ + LVG + E+ ++ + P R+I +PGFVRIN PY++ EV F+LDAI F+A +GYKFL Y+F P +SEWRH +H+ K L ISYK G+M W + YP+SFA + EA ++IV P + D+S F++ T GLRWF+LPSE A ILW+S ++ SK F PG+IA Sbjct: 63 YIDLFSYIEKNIIGRDKGFRGPFGDRLILYCDYTASGRSLKFIEEFIYNEVLPEYANTHTTNTVTSLQTTMFRHEARDIIRNSCQATEKDVILFVGSGCTGAIHKLIHNLNLIKPPIVIVGPFEHHSNLLPWRKLAHSIHRVRINKEGNLDIEHLESILKVQSELASKEDTPLIATFAAVSNVTGIISNVNLISAMVHKYRGIVFWDYATGAPYLPIDMNPIISSDDRELVYKDAIYFSMHKFIGGVQSPGILIAKRSLFTPGEIYPEGAGGGTVFFVRRENQIYLKDTEEREEGGTPDIVGCVRAGLAFQLKEAATTDAIVKRENYIVKYAWSKLSESSPNLIILGGSQIHRIPIFSFLIRQEIRENEYLFLHHNFVCSLLNDLFGIQSRSGCACAGPYAMDLIGINEELAQQFENALVGNGL-EMNVISKYFENPNREIVRPGFVRINFPYYMPDVEVKFVLDAIKFIARNGYKFLTLYKFNPVTSEWRHGNHELFRDRKWLSHISYKRGYMTWRRPNPQMPGKYPSSFAEVLKEAKRISDEIVKTPINIHDESLGFDDSTKGLRWFLLPSEVATILWNSQTVVNQSKAPFAPGSIA 660
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Planmine SMEST
Match: SMESG000038132.1 (SMESG000038132.1) HSP 1 Score: 649.047 bits (1673), Expect = 0.000e+0 Identity = 318/352 (90.34%), Postives = 321/352 (91.19%), Query Frame = 2 Query: 569 KRLYKLNGEEIKDITEIENGKSYVVTANEKYEHVKYGQELPEIKGNRVALKNLQLKQSHDGQKNIVDKLMDGIMQNITQRMKMNGNKMKAENKISCYIDLFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVK 1624 + LYKLNGEEIKDITEIENGKSYVVTANEKYEHVKYGQELPEIKGNRVALKNLQLKQSHDGQKN+VDKLMDG MQNITQRMKMNGNKMKAENKIS +VYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYV WDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVK Sbjct: 84 QELYKLNGEEIKDITEIENGKSYVVTANEKYEHVKYGQELPEIKGNRVALKNLQLKQSHDGQKNVVDKLMDGHMQNITQRMKMNGNKMKAENKIS----------------------------SVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVFWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVK 407 HSP 2 Score: 171.4 bits (433), Expect = 6.595e-46 Identity = 85/101 (84.16%), Postives = 91/101 (90.10%), Query Frame = 2 Query: 59 MNYIQIYKNGDFRSTPKKIILKKDNGLFYWRSFLEEITSCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQDYIGFGKISIDSLNDLT 361 MNYIQIYKN DFRSTPKKIILKKDNGLFYWRSFLEEI SCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQ+ K++ + + D+T Sbjct: 1 MNYIQIYKNRDFRSTPKKIILKKDNGLFYWRSFLEEIASCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQE---LYKLNGEEIKDIT 98
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Planmine SMEST
Match: SMESG000038132.1 (SMESG000038132.1) HSP 1 Score: 551.977 bits (1421), Expect = 0.000e+0 Identity = 269/302 (89.07%), Postives = 272/302 (90.07%), Query Frame = 2 Query: 719 KNLQLKQSHDGQKNIVDKLMDGIMQNITQRMKMNGNKMKAENKISCYIDLFKYIEMNIIGRDFIFKGPFGERLAVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVLWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVK 1624 +NLQLKQSHDGQKN+VDKLMDG MQNITQRMKMNGNKMKAENKIS +VYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYV WDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVK Sbjct: 85 ENLQLKQSHDGQKNVVDKLMDGHMQNITQRMKMNGNKMKAENKIS----------------------------SVYCDYTASGRPLRFIEEFLTKEVLPEYSNTHTTNTALSMQTTNFRHEAREIIHRSCNANDNDVVIFTGSGATGAINKLAYTMSHRKPPIIVTGPFEHHSNLLPWRKIAYSIHRIKINKIGELDIEDLESVLMKQFHICSTDNRQLIGVFSAASNVTGILTDVNMVSGIMHKYNGYVFWDYASAGPYLEIDMNPVVPGMNRYAVYKDAVYFSMHKFIGGPQSPGVLIVK 358 HSP 2 Score: 172.555 bits (436), Expect = 8.011e-47 Identity = 87/118 (73.73%), Postives = 95/118 (80.51%), Query Frame = 2 Query: 59 MNYIQIYKNGDFRSTPKKIILKKDNGLFYWRSFLEEITSCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQDYIGFGKISIDSLNDLTMLTSVGSRNLNKRIPQN 412 MNYIQIYKN DFRSTPKKIILKKDNGLFYWRSFLEEI SCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQ+ + + N + L +N+ +R+ N Sbjct: 1 MNYIQIYKNRDFRSTPKKIILKKDNGLFYWRSFLEEIASCLQVKDNLVKEIRVLPRGEKVKNIDDFIESDIYVAVFEGEIFSKQENLQLKQSHDGQKNVVDKLMDGHMQNITQRMKMN 118 The following BLAST results are available for this feature:
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 4
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of tRNA 2-thiocytidine biosynthesis protein TtcA vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30033303 ID=SMED30033303|Name=tRNA 2-thiocytidine biosynthesis protein TtcA|organism=Schmidtea mediterranea sexual|type=transcript|length=2810bpback to top protein sequence of SMED30033303-orf-1 >SMED30033303-orf-1 ID=SMED30033303-orf-1|Name=SMED30033303-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=917bp MNYIQIYKNGDFRSTPKKIILKKDNGLFYWRSFLEEITSCLQVKDNLVKEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|