RNA-binding protein MEX3B

Overview


Name	RNA-binding protein MEX3B
Smed ID	SMED30033302
Length (bp)	4165

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of RNA-binding protein MEX3B (SMED30033302) t-SNE clustered cells

Violin plots show distribution of expression levels for RNA-binding protein MEX3B (SMED30033302) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA-binding protein MEX3B (SMED30033302) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RNA-binding protein MEX3B (SMED30033302) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30033302

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 20

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
neoblast	SMED30033302	h1SMcG0018886	SmedASXL_011384	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X1 cell	SMED30033302	h1SMcG0018886	SmedASXL_011384	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30033302	h1SMcG0018886	SmedASXL_011384	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
Smed sexual biotype	SMED30033302	h1SMcG0018886	Contig31355	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30033302	h1SMcG0018886	Contig31355	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
pharynx	SMED30033302	h1SMcG0018886	dd_Smed_v4_1999_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
protonephridia	SMED30033302	h1SMcG0018886	dd_Smed_v4_1999_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30033302	h1SMcG0018886	dd_Smed_v4_1999_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30033302	h1SMcG0018886	dd_Smed_v4_1999_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30033302	h1SMcG0018886	dd_Smed_v4_1999_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30033302	h1SMcG0018886	dd_Smed_v4_1999_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neuron	SMED30033302	h1SMcG0018886	dd_Smed_v4_1999_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30033302	h1SMcG0018886	dd_Smed_v4_1999_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30033302	h1SMcG0018886	dd_Smed_v4_1999_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchyma	SMED30033302	h1SMcG0018886	dd_Smed_v4_1999_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30033302	h1SMcG0018886	dd_Smed_v4_1999_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30033302	h1SMcG0018886	dd_Smed_v4_1999_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30033302	h1SMcG0018886	dd_Smed_v4_1999_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Category 2 cell	SMED30033302	h1SMcG0018886	dd_Smed_v6_1999_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018
epidermis	SMED30033302	h1SMcG0018886	dd_Smed_v6_1999_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of RNA-binding protein MEX3B vs. Ensembl Human
Match: MEX3D (mex-3 RNA binding family member D [Source:HGNC Symbol;Acc:HGNC:16734])

HSP 1 Score: 77.7962 bits (190), Expect = 1.063e-13
Identity = 57/175 (32.57%), Postives = 82/175 (46.86%), Query Frame = 1

Query:  712 ISNFFKHKHGSSGSHLTQKQYLVLGVR-----------VPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
             + F  H        L   Q  V+G R           VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E      + I   A+       TR+K G + G      + PP L  +T   T  + VP R+VG V+G +G+ I  +Q+ T T I +P +D+
Sbjct:  147 FAGFAPHPAALGPPTLLADQMSVIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAA----QGPPNLPGQT---TIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDK 314

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Human
Match: MEX3D (mex-3 RNA binding family member D [Source:HGNC Symbol;Acc:HGNC:16734])

HSP 1 Score: 76.6406 bits (187), Expect = 1.273e-13
Identity = 51/139 (36.69%), Postives = 74/139 (53.24%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E      + I   A+       TR+K G + G      + PP L  +T   T  + VP R+VG V+G +G+ I  +Q+ T T I +P +D+
Sbjct:    7 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAA----QGPPNLPGQT---TIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDK 138

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BLAST of RNA-binding protein MEX3B vs. Ensembl Human
Match: MEX3C (mex-3 RNA binding family member C [Source:HGNC Symbol;Acc:HGNC:28040])

HSP 1 Score: 76.2554 bits (186), Expect = 1.996e-13
Identity = 48/139 (34.53%), Postives = 71/139 (51.08%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            V VPS EHV+EIVG++G KIK +R  T   I TP   E+ +F++    E      + I   A+       +RNK G   G +   P  P          T  + VP R+VG V+G +G+ I  +Q++T T I +P +D+
Sbjct:   66 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVAMAKREILSAAEHFSMIRASRNKNGPALGGLSCSPNLPGQ-------TTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDK 197

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Human
Match: MEX3B (mex-3 RNA binding family member B [Source:HGNC Symbol;Acc:HGNC:25297])

HSP 1 Score: 75.485 bits (184), Expect = 4.335e-13
Identity = 54/139 (38.85%), Postives = 76/139 (54.68%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E      + I   A+       +RNK  N A L G  P  PP L  +T   T  + VP R+VG V+G +G+ I  +Q++T T I +P +D+
Sbjct:   70 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMIRASRNK--NTA-LNGAVP-GPPNLPGQT---TIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDK 201

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Human
Match: MEX3C (mex-3 RNA binding family member C [Source:HGNC Symbol;Acc:HGNC:28040])

HSP 1 Score: 75.485 bits (184), Expect = 5.162e-13
Identity = 48/139 (34.53%), Postives = 71/139 (51.08%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            V VPS EHV+EIVG++G KIK +R  T   I TP   E+ +F++    E      + I   A+       +RNK G   G +   P  P          T  + VP R+VG V+G +G+ I  +Q++T T I +P +D+
Sbjct:  236 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVAMAKREILSAAEHFSMIRASRNKNGPALGGLSCSPNLPGQ-------TTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDK 367

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BLAST of RNA-binding protein MEX3B vs. Ensembl Celegans
Match: mex-3 (Muscle EXcess [Source:UniProtKB/TrEMBL;Acc:V6CKQ3])

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITRNKLGNIAGLMGERPRSPPMLGNRTP-LATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKD 1185
            V VP+ EHV+EIVG++G KIK +R  T   I TP   ED +F++    E   +  + I   A+  T+        +   R  +  + G   P   T+ + VP R+VG V+G +G+ I  +Q++T T I +P ++
Sbjct:   51 VEVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEDPIFVVTGRLEDVNEAKREIDCAAEHFTQ--------IRASRRHTQVVPGAHAPGQITSYVRVPLRVVGLVVGPKGATIKRIQQDTHTYIITPSRE 176

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Celegans
Match: mex-3 (Muscle EXcess [Source:UniProtKB/TrEMBL;Acc:V6CKQ3])

HSP 1 Score: 68.9366 bits (167), Expect = 1.319e-11
Identity = 42/133 (31.58%), Postives = 67/133 (50.38%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKD 1185
            V VP+ EHV+EIVG++G KIK +R  T   I TP   ED +F++    E   +  + I   A+  T+ +           P             T+ + VP R+VG V+G +G+ I  +Q++T T I +P ++
Sbjct:   82 VEVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEDPIFVVTGRLEDVNEAKREIDCAAEHFTQIRASRRHTQGAHAPGQ----------ITSYVRVPLRVVGLVVGPKGATIKRIQQDTHTYIITPSRE 204

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BLAST of RNA-binding protein MEX3B vs. Ensembl Fly
Match: CG11360 (gene:FBgn0039920 transcript:FBtr0310539)

HSP 1 Score: 73.559 bits (179), Expect = 9.644e-13
Identity = 61/202 (30.20%), Postives = 97/202 (48.02%), Query Frame = 1

Query:  763 QKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQ--ITRNKLGNIA-----GLMGE----------RPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMR 1317
            + Q +   V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E   K  + I   AD   + R     ++     G++G           R   PP +  +    T  + VP R+VG V+G +G+ I  +Q+ET T I +P +++         FE++    G  ++ +TA       KQ+ AH+ +R
Sbjct:  119 KSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVNKAKREILSAADHFSLIRASRKPVSDSQNNGMVGSTTSSGGGAVPRMSGPPCMPGQ---VTIQVRVPYRVVGLVVGPKGATIKHIQQETQTYIVTPSREK------EPIFEVT----GLPDNVDTAR------KQIEAHIALR 301

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Fly
Match: CG11360 (gene:FBgn0039920 transcript:FBtr0310540)

HSP 1 Score: 73.559 bits (179), Expect = 9.644e-13
Identity = 61/202 (30.20%), Postives = 97/202 (48.02%), Query Frame = 1

Query:  763 QKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQ--ITRNKLGNIA-----GLMGE----------RPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMR 1317
            + Q +   V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E   K  + I   AD   + R     ++     G++G           R   PP +  +    T  + VP R+VG V+G +G+ I  +Q+ET T I +P +++         FE++    G  ++ +TA       KQ+ AH+ +R
Sbjct:  119 KSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVNKAKREILSAADHFSLIRASRKPVSDSQNNGMVGSTTSSGGGAVPRMSGPPCMPGQ---VTIQVRVPYRVVGLVVGPKGATIKHIQQETQTYIVTPSREK------EPIFEVT----GLPDNVDTAR------KQIEAHIALR 301

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Fly
Match: CG11360 (gene:FBgn0039920 transcript:FBtr0310541)

HSP 1 Score: 73.559 bits (179), Expect = 9.644e-13
Identity = 61/202 (30.20%), Postives = 97/202 (48.02%), Query Frame = 1

Query:  763 QKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQ--ITRNKLGNIA-----GLMGE----------RPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMR 1317
            + Q +   V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E   K  + I   AD   + R     ++     G++G           R   PP +  +    T  + VP R+VG V+G +G+ I  +Q+ET T I +P +++         FE++    G  ++ +TA       KQ+ AH+ +R
Sbjct:  119 KSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVNKAKREILSAADHFSLIRASRKPVSDSQNNGMVGSTTSSGGGAVPRMSGPPCMPGQ---VTIQVRVPYRVVGLVVGPKGATIKHIQQETQTYIVTPSREK------EPIFEVT----GLPDNVDTAR------KQIEAHIALR 301

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Fly
Match: CG11360 (gene:FBgn0039920 transcript:FBtr0089091)

HSP 1 Score: 73.559 bits (179), Expect = 9.644e-13
Identity = 61/202 (30.20%), Postives = 97/202 (48.02%), Query Frame = 1

Query:  763 QKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQ--ITRNKLGNIA-----GLMGE----------RPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMR 1317
            + Q +   V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E   K  + I   AD   + R     ++     G++G           R   PP +  +    T  + VP R+VG V+G +G+ I  +Q+ET T I +P +++         FE++    G  ++ +TA       KQ+ AH+ +R
Sbjct:  119 KSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVNKAKREILSAADHFSLIRASRKPVSDSQNNGMVGSTTSSGGGAVPRMSGPPCMPGQ---VTIQVRVPYRVVGLVVGPKGATIKHIQQETQTYIVTPSREK------EPIFEVT----GLPDNVDTAR------KQIEAHIALR 301

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Zebrafish
Match: mex3b (mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628])

HSP 1 Score: 75.0998 bits (183), Expect = 3.517e-13
Identity = 61/184 (33.15%), Postives = 92/184 (50.00%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEIS-VYENGTVNSEETAWLQIHRAKQLI-AHLVMR 1317
            V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E      + I   A+       +RNK  ++ G        PP L  +T   T  + VP R+VG V+G +G+ I  +Q++T T I +P +D+         FE++ + EN            + RA++ I AH+ MR
Sbjct:   62 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRREDVAMARREIISAAEHFSMIRASRNKNSSLNG--NATVPGPPNLPGQT---TIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPV------FEVTGMPEN------------VDRAREEIEAHIAMR 222

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Zebrafish
Match: FO082781.1 (mex-3 RNA binding family member A [Source:NCBI gene;Acc:100332760])

HSP 1 Score: 74.3294 bits (181), Expect = 4.993e-13
Identity = 69/205 (33.66%), Postives = 93/205 (45.37%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPL---ATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMR---VWDQQPRNSTPSSDEGN 1368
            V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VFLI    E      + I   A+       +RNK             SPP      PL    T  + VP R+VG V+G +GS I  +Q++T T I +P +D  R P     FEI+    G+  + E A  +I       AH+  R   + D    N     + GN
Sbjct:  122 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFLITGRKEDVALARREIISAAEHFSMLRASRNKFSG----------SPP-----APLPGQTTIQVRVPYRVVGLVVGPKGSTIKRIQQQTCTYIVTPSRD--RDP----VFEIT----GSPGNAERAREEIE------AHIAFRTGGLHDHNNENDCLGPESGN 295

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Xenopus
Match: mex3d (mex-3 RNA binding family member D [Source:NCBI gene;Acc:100144717])

HSP 1 Score: 83.1889 bits (204), Expect = 1.599e-15
Identity = 53/140 (37.86%), Postives = 75/140 (53.57%), Query Frame = 1

Query:  784 GVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            GV VPS EHV+EIVG++G KIK +R  T   I TP   E+ +F++    E      + I   A+       TRNK   I G      +SPP L  +T   T  + VP R+VG V+G +G+ I  +Q+ T T I +P +D+
Sbjct:  239 GVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPIRGEEPIFIVTGRKEDVEMAKREILAAAEHFSIIRATRNKASGIPGAT----QSPPSLPGQT---TIQVRVPYRVVGLVVGPKGATIKKIQQSTHTYIVTPSRDK 371

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Xenopus
Match: mex3d (mex-3 RNA binding family member D [Source:NCBI gene;Acc:100144717])

HSP 1 Score: 83.1889 bits (204), Expect = 1.850e-15
Identity = 53/140 (37.86%), Postives = 75/140 (53.57%), Query Frame = 1

Query:  784 GVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            GV VPS EHV+EIVG++G KIK +R  T   I TP   E+ +F++    E      + I   A+       TRNK   I G      +SPP L  +T   T  + VP R+VG V+G +G+ I  +Q+ T T I +P +D+
Sbjct:  239 GVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPIRGEEPIFIVTGRKEDVEMAKREILAAAEHFSIIRATRNKASGIPGAT----QSPPSLPGQT---TIQVRVPYRVVGLVVGPKGATIKKIQQSTHTYIVTPSRDK 371

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Xenopus
Match: MEX3B (mex-3 RNA binding family member B [Source:NCBI gene;Acc:100490923])

HSP 1 Score: 82.0333 bits (201), Expect = 3.277e-15
Identity = 53/139 (38.13%), Postives = 76/139 (54.68%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E      + I   A+       +RNK  N A L G    +PP L  +T   T  + VP R+VG V+G +G+ I  +Q++T T I +P +D+
Sbjct:   63 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMIRASRNK--NAAALNGGSVPAPPNLPGQT---TIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDK 196

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Xenopus
Match: atp6ap2 (ATPase, H+ transporting, lysosomal accessory protein 2 [Source:Xenbase;Acc:XB-GENE-964301])

HSP 1 Score: 74.3294 bits (181), Expect = 6.557e-13
Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNK----LGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E      + I   A+       +RNK    +GN+        +  P L  +T   T  + VP R+VG V+G +G+ I  +Q++T T I +P +D+
Sbjct:   80 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMAKREILSAAEHFSMIRASRNKNAPAVGNV--------QCAPNLPGQT---TVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDK 211

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BLAST of RNA-binding protein MEX3B vs. Ensembl Xenopus
Match: MEX3A (mex-3 RNA binding family member A [Source:HGNC Symbol;Acc:HGNC:33482])

HSP 1 Score: 51.9878 bits (123), Expect = 5.321e-6
Identity = 39/122 (31.97%), Postives = 57/122 (46.72%), Query Frame = 1

Query:  835 GKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKD 1185
            G KIK +R  T   I TP   E+ VF++    E      + I   A+       +RNK G   G       S P L  +    T  + VP R+VG V+G +G+ I  +Q++T T I +P +D
Sbjct:   63 GCKIKALRAKTNTYIKTPVRGEEPVFMVTGRREDVAMARREIISAAEHFSMIRASRNKAGTAFG-------SAPTLPGQ---VTIRVRVPYRVVGLVVGPKGATIKRIQQQTNTYIITPSRD 174

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BLAST of RNA-binding protein MEX3B vs. Ensembl Mouse
Match: Mex3d (mex3 RNA binding family member D [Source:MGI Symbol;Acc:MGI:2681847])

HSP 1 Score: 80.4925 bits (197), Expect = 1.166e-14
Identity = 63/190 (33.16%), Postives = 92/190 (48.42%), Query Frame = 1

Query:  667 VLNRSATMKNSNSSRISNFFKHKHGSSGSHLTQKQYLVLGVR-----------VPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            +L+   + + S     ++F  H      S L  +Q  V+G R           VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E      + I   A+       TR+K G   GL G  P  PP L  +T   T  + VP R+VG V+G +G+ I  +Q+ T T I +P +D+
Sbjct:  187 LLDPDVSPRPSPPDVFASFAPHPAALGPSTLLAEQLNVIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREILSAAEHFSLIRATRSKAG---GLSGATP-GPPNLPGQT---TIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDK 369

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Mouse
Match: Mex3b (mex3 RNA binding family member B [Source:MGI Symbol;Acc:MGI:1918252])

HSP 1 Score: 75.485 bits (184), Expect = 3.322e-13
Identity = 54/139 (38.85%), Postives = 76/139 (54.68%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E      + I   A+       +RNK  N A L G  P  PP L  +T   T  + VP R+VG V+G +G+ I  +Q++T T I +P +D+
Sbjct:   77 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMIRASRNK--NTA-LNGAVP-GPPNLPGQT---TIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDK 208

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Mouse
Match: Mex3c (mex3 RNA binding family member C [Source:MGI Symbol;Acc:MGI:2652843])

HSP 1 Score: 75.0998 bits (183), Expect = 4.094e-13
Identity = 48/139 (34.53%), Postives = 71/139 (51.08%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            V VPS EHV+EIVG++G KIK +R  T   I TP   E+ +F++    E      + I   A+       +RNK G   G +   P  P          T  + VP R+VG V+G +G+ I  +Q++T T I +P +D+
Sbjct:  229 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVAMAKREILSAAEHFSMIRASRNKNGPALGGLSCSPNLPGQ-------TTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDK 360

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Mouse
Match: Mex3a (mex3 RNA binding family member A [Source:MGI Symbol;Acc:MGI:1919890])

HSP 1 Score: 72.7886 bits (177), Expect = 1.582e-12
Identity = 52/170 (30.59%), Postives = 81/170 (47.65%), Query Frame = 1

Query:  691 KNSNSSRISNFFKHKHGSSGSHLTQKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKD 1185
            K +N +++   +K         L         V VP+ EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E      + I   A+       +RNK G   G+      +P + G      T  + VP R+VG V+G +G+ I  +Q++T T I +P +D
Sbjct:  108 KGANDAKLCALYKEAE----LRLKGSSNTTECVPVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFMVTGRREDVATARREIISAAEHFSMIRASRNKSGAAFGV------APALPGQ----VTIRVRVPYRVVGLVVGPKGATIKRIQQQTNTYIITPSRD 263

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BLAST of RNA-binding protein MEX3B vs. UniProt/SwissProt
Match: sp|A1L3F4|MEX3B_XENLA (RNA-binding protein MEX3B OS=Xenopus laevis OX=8355 GN=mex3b PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.355e-15
Identity = 53/139 (38.13%), Postives = 77/139 (55.40%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            V+VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E      + I   A+       +RNK  N A L G    +PP L  +T   T  + VP R+VG V+G +G+ I  +Q++T T I +P +D+
Sbjct:   63 VQVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVALARREIISAAEHFSMIRASRNK--NAAALNGGSVPAPPNLPGQT---TIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDK 196

[Close]

BLAST of RNA-binding protein MEX3B vs. UniProt/SwissProt
Match: sp|Q3UE17|MEX3D_MOUSE (RNA-binding protein MEX3D OS=Mus musculus OX=10090 GN=Mex3d PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.546e-13
Identity = 59/186 (31.72%), Postives = 89/186 (47.85%), Query Frame = 1

Query:  667 VLNRSATMKNSNSSRISNFFKHKHGSSGSHLTQKQYLVLGVR-----------VPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPE-TAIKVGQIIQQLADQITRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            +L+   + + S     ++F  H      S L  +Q  V+G R           VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E   +   +I+      + R       GL G  P  PP L  +T   T  + VP R+VG V+G +G+ I  +Q+ T T I +P +D+
Sbjct:  113 LLDPDVSPRPSPPDVFASFAPHPAALGPSTLLAEQLNVIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREILSAEHFSLIRATRSKAGGLSGATP-GPPNLPGQT---TIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDK 294

[Close]

BLAST of RNA-binding protein MEX3B vs. UniProt/SwissProt
Match: sp|Q86XN8|MEX3D_HUMAN (RNA-binding protein MEX3D OS=Homo sapiens OX=9606 GN=MEX3D PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 5.103e-13
Identity = 57/175 (32.57%), Postives = 82/175 (46.86%), Query Frame = 1

Query:  712 ISNFFKHKHGSSGSHLTQKQYLVLGVR-----------VPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
             + F  H        L   Q  V+G R           VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E      + I   A+       TR+K G + G      + PP L  +T   T  + VP R+VG V+G +G+ I  +Q+ T T I +P +D+
Sbjct:  147 FAGFAPHPAALGPPTLLADQMSVIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAA----QGPPNLPGQT---TIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDK 314

[Close]

BLAST of RNA-binding protein MEX3B vs. UniProt/SwissProt
Match: sp|Q6ZN04|MEX3B_HUMAN (RNA-binding protein MEX3B OS=Homo sapiens OX=9606 GN=MEX3B PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.082e-12
Identity = 54/139 (38.85%), Postives = 76/139 (54.68%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E      + I   A+       +RNK  N A L G  P  PP L  +T   T  + VP R+VG V+G +G+ I  +Q++T T I +P +D+
Sbjct:   70 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMIRASRNK--NTA-LNGAVP-GPPNLPGQT---TIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDK 201

[Close]

BLAST of RNA-binding protein MEX3B vs. UniProt/SwissProt
Match: sp|Q5U5Q3|MEX3C_HUMAN (RNA-binding E3 ubiquitin-protein ligase MEX3C OS=Homo sapiens OX=9606 GN=MEX3C PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.479e-12
Identity = 48/139 (34.53%), Postives = 71/139 (51.08%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            V VPS EHV+EIVG++G KIK +R  T   I TP   E+ +F++    E      + I   A+       +RNK G   G +   P  P          T  + VP R+VG V+G +G+ I  +Q++T T I +P +D+
Sbjct:  236 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVAMAKREILSAAEHFSMIRASRNKNGPALGGLSCSPNLPGQ-------TTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDK 367

[Close]

BLAST of RNA-binding protein MEX3B vs. TrEMBL
Match: A0A0R3UGA8 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS6241 PE=4 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 5.647e-62
Identity = 147/376 (39.10%), Postives = 204/376 (54.26%), Query Frame = 1

Query:  613 YQSMASKMGFLVGQDLDEVLNRSATMKNSNSSRISNFFKHKHGSSGSHLTQKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITRNKLG----------NIAGLM----------------------------GERPRSPPML---------------------GN-------RTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMRVWDQQPRNSTPSSDEG---------NCTPNTC------------SPEWIWPEVSRMDDGDAKEIIDRILRSSKAK 1479
            Y SMA K G++VG +L+ +   S    +    RIS  F++++G + +  T+  Y+ LGVRVPSK+HVSEIVGK G+KIK IR+ TGALI TP E EDHVF+IEA PE A+ V ++I   A +IT++K+           +I G M                            G  P   P+L                     GN       R  LA + I VPQ +VGK+IGTQGSIITT+QK+TGTEIKSPPK+  R P  T++FEIS Y++  + S + A  ++ +AKQLI HLVMR ++   R ++   DEG         N T + C            +  W+WP+V++MD  +A+E++DRIL  SK+K
Sbjct:  218 YNSMAQKRGYIVGAELERIKENSRRSTSHTYGRISAHFRNRYGETEAK-TKASYMQLGVRVPSKDHVSEIVGKGGQKIKLIREETGALITTPGEYEDHVFIIEAPPEIALHVAELISTRAQEITQSKMSASERRRGSTSSIPGCMALFSMNSINGSAPSNGRLMNRSPDDLPTGSLPSPAPLLKTNVNSGSDAATFAFSNGLSSGNNVGGSSGRILLARSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPSATSEFEISAYQSLGMTSNQAAECRVQQAKQLIGHLVMRQFE---RRASEELDEGGGCSGKPRANSTGDDCDENGSASSRNSKTVGWMWPDVAQMDSTEAREVLDRILAESKSK 589

[Close]

BLAST of RNA-binding protein MEX3B vs. TrEMBL
Match: A0A0R3T6J8 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS2685 PE=4 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.189e-37
Identity = 124/393 (31.55%), Postives = 193/393 (49.11%), Query Frame = 1

Query:  595 PVELIEYQSMASKMGFLVGQDLDEVLNRSATMKNSNSSRISNFFKHKHGSSGSHLTQKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITR-------------NKLGNIAGLMGER---------------PRSPPMLGNRT-----PLATATI------------------GVPQRLVGKVIGTQGSIIT---------TVQKETGTE---IKSPPKD---ELRAP--------GDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMRVWDQQ-----PRNSTPSSDEGNCTPNTCSPE-------------------WIWPEVSRMDDGDAKEIIDRILRSSKAK 1479
            P++ ++Y + A   GF+VGQ+L+ +   S    +    RIS  F++++G + +  T+  YL LGVRVP+K+HVSEIVGK G+KIK IR+ TGALI TP E EDHVF+IEA PE A+KV  +I   A +I++             N +   A L G                  RSP  L N T     PL  +++                  G+P  +     GT  ++++          V K  GT+   I +  KD   E+++P          T++FEIS Y++  + +++ A  ++ +AKQLI HLVMR ++++       N+T +   G    N+   E                   W+WP+V +MD  +A++++DRIL  SK+K
Sbjct:  174 PIDRLQYINYARSKGFIVGQELEHIKENSRRSTSHTYGRISAHFRNRYGETEAK-TKASYLQLGVRVPTKDHVSEIVGKGGQKIKLIREETGALITTPGENEDHVFIIEAPPEIALKVADLITNRAQEISQSKSNASERRRGSTNSIPGCASLFGGSGVVSATAANGGQRLVSRSPDDLPNVTIPSPSPLLKSSLTNGGNYSNENGFFSSNGNGLPNGVSNSNGGTTRTLLSRSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPSATSEFEISAYQSQGMTAQD-AEARVQQAKQLIGHLVMRQFERRYSEELEDNNTGNGSSGKSRNNSNGEESDRNSNGKTATTNVSNGVAWMWPDVQQMDAKEAQDVLDRILAESKSK 564

[Close]

BLAST of RNA-binding protein MEX3B vs. TrEMBL
Match: A0A183L5V8 (KH domain-containing protein OS=Schistosoma curassoni OX=6186 PE=4 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.393e-32
Identity = 100/265 (37.74%), Postives = 133/265 (50.19%), Query Frame = 1

Query: 1048 GNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMRVWDQQPRNSTPSSDEGNCTPNTCSPE----------------------------WIWPEVSRMDDGDAKEIIDRILRSSKAKITPSTSSTEGTNIDGLVMPPPTSTG------MSPQFSMSSLHDSNKQQSSSG---------FHSLNSTPFKMMPEDSWNRNSISDCYSSSTDA 1713
            G+R  LA   I VPQ +VGK+IGTQGSIITT+QK+TGTEIKSPPK+ +R P  T++FEIS Y+   ++S + A  ++ +AKQLI HLVMR   Q  R ++   +E + + N  S E                            W+WP+V++MD  +A+E++DRIL  SK K       T       +V   P ST       M+ Q S+ +L   N  QS SG          H LN T F     DS   N   D  S  T A
Sbjct:  195 GSRVLLARGRISVPQEMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAVRGPNATSEFEISAYQGLGLSSNQAAECRVQQAKQLIGHLVMR---QLERRASEEVEEASGSSNISSEEQRVNGPSASTVSGVCNSTSKTNGGGNNGWMWPDVAQMDSQEAREVLDRILVESKNK-------TRRAKELAVVSTGPASTSVCSIATMNTQGSLLNLKGCNGSQSLSGDNQHSNHFQSHLLNGTYF-----DSAQTNGCEDVISGDTSA 444

HSP 2 Score: 67.781 bits (164), Expect = 1.197e-7
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 1

Query:  835 GKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITRNKLGNIAGLMGERPR 1032
            G+KIK IR+ TGALI TP E+E+HVF+IEA PE A++V   +   A +IT++K+     + GER R
Sbjct:    8 GQKIKLIREETGALITTPGEQEEHVFIIEAPPEIAMRVAHHLATRAQEITQSKI-----VAGERRR 68

[Close]

BLAST of RNA-binding protein MEX3B vs. TrEMBL
Match: A0A3P8H840 (KH domain-containing protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS22725 PE=4 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.486e-32
Identity = 100/265 (37.74%), Postives = 133/265 (50.19%), Query Frame = 1

Query: 1048 GNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMRVWDQQPRNSTPSSDEGNCTPNTCSPE----------------------------WIWPEVSRMDDGDAKEIIDRILRSSKAKITPSTSSTEGTNIDGLVMPPPTSTG------MSPQFSMSSLHDSNKQQSSSG---------FHSLNSTPFKMMPEDSWNRNSISDCYSSSTDA 1713
            G+R  LA   I VPQ +VGK+IGTQGSIITT+QK+TGTEIKSPPK+ +R P  T++FEIS Y+   ++S + A  ++ +AKQLI HLVMR   Q  R ++   +E + + N  S E                            W+WP+V++MD  +A+E++DRIL  SK K       T       +V   P ST       M+ Q S+ +L   N  QS SG          H LN T F     DS   N   D  S  T A
Sbjct:  195 GSRVLLARGRISVPQEMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAVRGPNATSEFEISAYQGLGLSSNQAAECRVQQAKQLIGHLVMR---QLERRASEEVEEASGSSNISSEEQRVNGPSASTVSGVCNSTSKTNGGGNNGWMWPDVAQMDSQEAREVLDRILVESKNK-------TRRAKELAVVSTGPASTSVCSIATMNTQGSLLNLKGCNGSQSLSGDNQHSNHFQSHLLNGTYF-----DSAQTNGCEDVISGDTSA 444

HSP 2 Score: 67.781 bits (164), Expect = 1.176e-7
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 1

Query:  835 GKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITRNKLGNIAGLMGERPR 1032
            G+KIK IR+ TGALI TP E+E+HVF+IEA PE A++V   +   A +IT++K+     + GER R
Sbjct:    8 GQKIKLIREETGALITTPGEQEEHVFIIEAPPEIAMRVAHHLATRAQEITQSKI-----VAGERRR 68

[Close]

BLAST of RNA-binding protein MEX3B vs. TrEMBL
Match: A0A1S8WYK3 (KH domain protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=X801_04642 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.658e-32
Identity = 80/163 (49.08%), Postives = 106/163 (65.03%), Query Frame = 1

Query: 1033 SPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMRVW--------DQQPRNSTPSSDE------GNCTPNTCSPEWIWPEVSRMDDGDAKEIIDRILRSSKAK 1479
            SP   G+R  LA   I VPQ LVGK+IGTQGSIITT+QK+TGTEIKSPPK+  R P  T++FEIS Y+   ++S + A  ++ +AKQLI HLVMR          D+   +S  SSD+      G  TP T +  W+WP+V++MD  +A+E++DRIL  SK K
Sbjct:  197 SPNTPGSRILLARGRISVPQELVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPNATSEFEISAYQGVGLSSNQAAECRVQQAKQLIGHLVMRQLERRASEEIDEASGSSNLSSDDQRMGLGGGNTPRTTT-AWMWPDVAQMDSQEAREVLDRILAESKNK 358

HSP 2 Score: 65.4698 bits (158), Expect = 1.133e-6
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 1

Query:  838 KKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITRNKLGNIAGLMGERPR 1032
            +KIK IR+ TGALI TP E E+HVF+IEA PE A++V   +   A +IT++KL       GER R
Sbjct:    1 QKIKLIREETGALITTPGEHEEHVFIIEAPPEIAMRVAHHLSTRAQEITQSKLA-----AGERRR 60

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Cavefish
Match: ENSAMXT00000025356.2 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000037.1:51923:60658:1 gene:ENSAMXG00000024633.2 transcript:ENSAMXT00000025356.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 80.1073 bits (196), Expect = 6.285e-15
Identity = 72/201 (35.82%), Postives = 97/201 (48.26%), Query Frame = 1

Query:  739 GSSGSHLTQKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPL---ATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMR 1317
            GS+G    +   +   V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VFLI    E      + I   A+       +RNKLG      G    SPP     TPL    T  + VP R+VG V+G +GS I  +Q++T T I +P +D  R P     FEI+    G+  + E A  +I       AH+  R
Sbjct:   97 GSAGETKARGCNITECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFLITGRKEDVALARREIISAAEHFSMLRASRNKLG--VSFNG----SPP-----TPLPGQTTIQVRVPYRVVGLVVGPKGSTIKRIQQQTCTYIVTPSRD--RDP----VFEIT----GSPGNAERAREEIE------AHIAFR 270

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Cavefish
Match: mex3b (mex-3 RNA binding family member B [Source:NCBI gene;Acc:103046405])

HSP 1 Score: 75.0998 bits (183), Expect = 2.487e-13
Identity = 61/182 (33.52%), Postives = 91/182 (50.00%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQIT--RNKLGNIAGLMGERPR-SPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEIS-VYENGTVNSEETAWLQIHRAKQLI-AHLVMR 1317
            V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E      + I   A+  +  R      + L G  P   PP L  +T   T  + VP R+VG V+G +G+ I  +Q++T T I +P +D+         FE++ + EN            + RA++ I AH+ MR
Sbjct:   62 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRREDVAMARREIISAAEHFSMIRASRNKNSSLNGSTPVPGPPNLPGQT---TIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPV------FEVTGMPEN------------VDRAREEIEAHIAMR 222

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Cavefish
Match: MEX3D (mex-3 RNA binding family member D [Source:HGNC Symbol;Acc:HGNC:16734])

HSP 1 Score: 64.6994 bits (156), Expect = 4.446e-10
Identity = 49/160 (30.63%), Postives = 75/160 (46.88%), Query Frame = 1

Query:  730 HKH---GSSGSHLTQKQY---LVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITRNKLGNIAGLMGERPRSPPMLGNRTP-LATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            H H   G  GS L  ++    +   V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E      + I   A+  +  +        G             P   T  + VP R+VG V+G +G+ I  +Q++T T I +P +++
Sbjct:   20 HSHVVLGEQGSVLCNRKRSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRREDVEMAKREIISAAEHFSMIRASRCKAGAGGNGGGSLPGPPHLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSREK 179

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Sea Lamprey
Match: mex3b (mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628])

HSP 1 Score: 49.6766 bits (117), Expect = 4.178e-6
Identity = 38/143 (26.57%), Postives = 68/143 (47.55%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKE---------DHVFLIEAVPETAIKVGQIIQQLADQITRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            V VPS EHV+EIVG++  ++ T          T  + E          +++   AV E  + +  ++ +     + + +G++ G        PP+ G      T  + VP R+VG V+G +G+ I  +Q+ T T I +P +D+
Sbjct:   13 VAVPSSEHVAEIVGRQDTRLLTFGADVNVHTFTRVDTERPLYIHVHRSYIYWTVAVSEHLVVMKTVVLRGFKCSSDDLVGDLYG------PXPPVPGQ----TTIQVRVPYRVVGLVVGPKGATIKRIQQGTHTYIVTPSRDK 145

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Nematostella
Match: EDO32414 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SV60])

HSP 1 Score: 70.0922 bits (170), Expect = 2.320e-13
Identity = 47/141 (33.33%), Postives = 69/141 (48.94%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETA-------IKVGQIIQQLADQITRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            V VPS EHV+EIVG++G KIK +R  T   I TP   ED VF++    E         I   +   Q+  Q   N L ++A                   +T  + VP R+VG V+G +G+ I  +Q++T T I +P +D+
Sbjct:   10 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEDPVFVVTGRKEDVTLAKREIISAAEHFSQIRAQRKNNSLNSLAPGPPSPSVPGQ--------STILVRVPYRVVGLVVGPKGATIKRIQQQTNTYIVTPSRDK 142

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Medaka
Match: ENSORLT00000028704.1 (mex-3 RNA binding family member A [Source:NCBI gene;Acc:111948930])

HSP 1 Score: 80.1073 bits (196), Expect = 8.481e-15
Identity = 60/161 (37.27%), Postives = 83/161 (51.55%), Query Frame = 1

Query:  730 HKHGSSGSHLTQKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLG-NIAGLMGERPRSPPMLGNRTPL---ATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKD 1185
            ++ GS G    +   +   V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VFLI    E      + I   A+       +RNKLG + +G       SPP     TPL    T  + VP R+VG V+G +GS I  +Q++T T I +P +D
Sbjct:  157 YESGSGGETKGRGCNITECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFLITGRKEDVALARREIISAAEHFSMLRASRNKLGVSFSG-------SPP-----TPLPGQTTIQVRVPYRVVGLVVGPKGSTIKRIQQQTCTYIVTPSRD 305

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Medaka
Match: ENSORLT00000006291.2 (RNA-binding protein MEX3B [Source:NCBI gene;Acc:101170521])

HSP 1 Score: 74.7146 bits (182), Expect = 4.961e-13
Identity = 50/139 (35.97%), Postives = 72/139 (51.80%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQI-----TRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            V VPS EHV+EIVG++G KIK +R  T   I TP   E  VF++    E      + I   A+       +RNK G    L+       P L  +T   T  + VP R+VG V+G +G+ I  +Q++T T I +P +D+
Sbjct:  199 VAVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEQPVFVVTGRKEDVAMAKREILSAAEHFSLIRASRNKTGP---LLSVTALGTPTLPGQT---TIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDK 331

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Medaka
Match: MEX3D (mex-3 RNA binding family member D [Source:NCBI gene;Acc:101171527])

HSP 1 Score: 64.6994 bits (156), Expect = 5.430e-10
Identity = 43/134 (32.09%), Postives = 67/134 (50.00%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E      + I   A+  +  +             S P   +     T  + VP R+VG V+G +G+ I  +Q++T T I +P +++
Sbjct:  152 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRREDVEMAKREIVSAAEHFSMIRASRCKAGGSGGGGSLPGPPHLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSREK 285

[Close]

BLAST of RNA-binding protein MEX3B vs. Ensembl Medaka
Match: MEX3D (mex-3 RNA binding family member D [Source:NCBI gene;Acc:101171527])

HSP 1 Score: 63.929 bits (154), Expect = 8.339e-10
Identity = 43/134 (32.09%), Postives = 67/134 (50.00%), Query Frame = 1

Query:  787 VRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDE 1188
            V VPS EHV+EIVG++G KIK +R  T   I TP   E+ VF++    E      + I   A+  +  +             S P   +     T  + VP R+VG V+G +G+ I  +Q++T T I +P +++
Sbjct:  152 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRREDVEMAKREIVSAAEHFSMIRASRCKAGGSGGGGSLPGPPHLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSREK 285

[Close]

BLAST of RNA-binding protein MEX3B vs. Planmine SMEST
Match: SMESG000025422.1 (SMESG000025422.1)

HSP 1 Score: 1423.68 bits (3684), Expect = 0.000e+0
Identity = 798/800 (99.75%), Postives = 800/800 (100.00%), Query Frame = 1

Query:   43 MLSASFNQTPNQGLRFNLSDNSMNEFSSQIGYHENYIPKPEMYNQFYNQTSHFMQSLNQDSKMYSISEVDXXXXXXXXXXXXXDMSQLDHNKDFDYILSSRLQAMNIKPNCNISRSNSAHNSPYDNRVTPRHFSQSTSNTPLPVSNRLGREMDMMRLNAPIMQLFXXXXXXXXXXXXXXXXRQSPVELIEYQSMASKMGFLVGQDLDEVLNRSATMKNSNSSRISNFFKHKHGSSGSHLTQKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMRVWDQQPRNSTPSSDEGNCTPNTCSPEWIWPEVSRMDDGDAKEIIDRILRSSKAKITPSTSSTEGTNIDGLVMPPPTSTGMSPQFSMSSLHDSNKQQSSSGFHSLNSTPFKMMPEDSWNRNSISDCYSSSTDAQVRNRLNVFKDTPVFYPPQYSNMQPSMSGGDSHHRATAGSNHYYPSNDSAFXXXXXXXXXXXXXNRDSNQQLFLSDNNYILDHLSADXXXXXXXXXXXXXXXXXXXXXDSWAASKPGFYXXXXXXXXXXXXXXXXXHQNYADDTRFGNVKYLWKNCPSDSNHDSVASWASKLDXXXXXXXXXIDNXXXXXXXXVSSAPVATAAGVLLRQSHRTIAPPPESMFGTIGDGRKRNSAASNSDERED 2442
            MLSASFNQTPNQGLRFNLSDNSMNEFSSQIGYHENYIPKPEMYNQFYNQTSHFMQSLNQDSKMYSISEVDSLHHHSNSNSISNDMSQLDHNKDFDYILSSRLQAMNIKPNCNISRSNSAHNSPYDNRVTPRHFSQSTSNTPLPVSNRLGREMDMMRLNAPIMQLFPQNSPSSNPVNSYSMSRQSPVELIEYQSMASKMGFLVGQDLDEVLNRSATMKNSNSSRISNFFKHKHGSSGSHLTQKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMRVWDQQPRNSTPSSDEGNCTPNTCSPEWIWPEVSRMDDGDAKEIIDRILRSSKAKITPSTSSTEGTNIDGLVMPPPTSTGMSPQFSMSSLHD+NKQQSSSGFHSLNSTPFKMMPEDSWNRNSISDCYSSSTDAQVRNRLNVFKDTPVFYPPQYSNMQPSMSGGDSHHRATAGSNHYYPSNDSAFYDSYYPSVYSPPSNRDSNQQLFLSDNNYILDHLSADSPPPNCNNNNSNHHLVNGNNSDSWAASKPGFYSNGNPNNSSNGVGGCCNHQNYADDTRFGNVKYLWKNCPSDSNHDSVASWASKLDNNNGGSNGGIDNHHHQQQQQVSSAPVATAAGVLLRQS+RTIAPPPESMFGTIGDGRKRNSAASNSDERED
Sbjct:    1 MLSASFNQTPNQGLRFNLSDNSMNEFSSQIGYHENYIPKPEMYNQFYNQTSHFMQSLNQDSKMYSISEVDSLHHHSNSNSISNDMSQLDHNKDFDYILSSRLQAMNIKPNCNISRSNSAHNSPYDNRVTPRHFSQSTSNTPLPVSNRLGREMDMMRLNAPIMQLFPQNSPSSNPVNSYSMSRQSPVELIEYQSMASKMGFLVGQDLDEVLNRSATMKNSNSSRISNFFKHKHGSSGSHLTQKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMRVWDQQPRNSTPSSDEGNCTPNTCSPEWIWPEVSRMDDGDAKEIIDRILRSSKAKITPSTSSTEGTNIDGLVMPPPTSTGMSPQFSMSSLHDTNKQQSSSGFHSLNSTPFKMMPEDSWNRNSISDCYSSSTDAQVRNRLNVFKDTPVFYPPQYSNMQPSMSGGDSHHRATAGSNHYYPSNDSAFYDSYYPSVYSPPSNRDSNQQLFLSDNNYILDHLSADSPPPNCNNNNSNHHLVNGNNSDSWAASKPGFYSNGNPNNSSNGVGGCCNHQNYADDTRFGNVKYLWKNCPSDSNHDSVASWASKLDNNNGGSNGGIDNHHHQQQQQVSSAPVATAAGVLLRQSNRTIAPPPESMFGTIGDGRKRNSAASNSDERED 800

[Close]

BLAST of RNA-binding protein MEX3B vs. Planmine SMEST
Match: SMESG000062702.1 (SMESG000062702.1)

HSP 1 Score: 223.402 bits (568), Expect = 2.663e-60
Identity = 147/360 (40.83%), Postives = 198/360 (55.00%), Query Frame = 1

Query:  625 ASKMGFLVGQDLDEVLNRS--ATMKNSNSSRISNFFKHKHGSSGSHLTQKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQIT--RN----KLGNIAGLMGERP--RSPP-----MLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMRVWDQQPRNSTP-----------------SSDEGNCTPNTC-------------------------SP-EWIWPEVSRMDDGDAKEIIDRILRSSKAKI-TPSTSSTEGTNIDGL 1527
            A K+GF+VG +L+ V  +S  + ++N+   RI N FK ++G S S  ++K YL LGVRVPSKEHVSEIVGK+G KIK IR+ TGALI TP E+EDHVF+IEA P TA+ V QI++  A+ IT  RN    +  +       RP  RSP        G++  LA+  I VP+ +VG++IGTQGSIITT+Q++TGTEI+SPPK+  +     ADFEI VY+   +     A  ++  AKQLIAH+ M   ++      P                 SSDE N                                P EWIW +V +++D  A+E+++RIL  SK K  T S  S    N  GL
Sbjct:  175 AQKIGFIVGDELENVKAKSHRSVIQNT-PDRIINTFKDRYGQSDSS-SKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRRSSCPITNNNRPSNRSPAASGITQAGSKVVLASGRIQVPKIIVGRIIGTQGSIITTIQRDTGTEIRSPPKEIGKPKNSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEESKKKTKTRSEPSIYDDNTKGL 532

[Close]

BLAST of RNA-binding protein MEX3B vs. Planmine SMEST
Match: SMESG000062702.1 (SMESG000062702.1)

HSP 1 Score: 223.016 bits (567), Expect = 2.748e-60
Identity = 147/360 (40.83%), Postives = 198/360 (55.00%), Query Frame = 1

Query:  625 ASKMGFLVGQDLDEVLNRS--ATMKNSNSSRISNFFKHKHGSSGSHLTQKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQIT--RN----KLGNIAGLMGERP--RSPP-----MLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMRVWDQQPRNSTP-----------------SSDEGNCTPNTC-------------------------SP-EWIWPEVSRMDDGDAKEIIDRILRSSKAKI-TPSTSSTEGTNIDGL 1527
            A K+GF+VG +L+ V  +S  + ++N+   RI N FK ++G S S  ++K YL LGVRVPSKEHVSEIVGK+G KIK IR+ TGALI TP E+EDHVF+IEA P TA+ V QI++  A+ IT  RN    +  +       RP  RSP        G++  LA+  I VP+ +VG++IGTQGSIITT+Q++TGTEI+SPPK+  +     ADFEI VY+   +     A  ++  AKQLIAH+ M   ++      P                 SSDE N                                P EWIW +V +++D  A+E+++RIL  SK K  T S  S    N  GL
Sbjct:  159 AQKIGFIVGDELENVKAKSHRSVIQNT-PDRIINTFKDRYGQSDSS-SKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRRSSCPITNNNRPSNRSPAASGITQAGSKVVLASGRIQVPKIIVGRIIGTQGSIITTIQRDTGTEIRSPPKEIGKPKNSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEESKKKTKTRSEPSIYDDNTKGL 516

[Close]

BLAST of RNA-binding protein MEX3B vs. Planmine SMEST
Match: SMESG000071674.1 (SMESG000071674.1)

HSP 1 Score: 204.912 bits (520), Expect = 1.649e-55
Identity = 131/327 (40.06%), Postives = 186/327 (56.88%), Query Frame = 1

Query:  610 EYQSMASKMGFLVGQDLDEVLNRSA-TMKNSNSSRISNFFKHKHGSSGSHLTQKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITRNK----------LGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDT-ADFEISVYE-NGTVNSEETAWLQIHRAKQLIAHLVMRVWDQQPRNSTPSSD----------------EGNCTPNT--------CSPEWIWPEVSRMDDGDAKEIIDRILRSSKAK 1479
            +Y   A   GF+VG +L+ V  +S  ++    S+ IS  F+  +G   + + Q  Y  +GVRVP+KEHVSEIVGK+G KIK IR+ TGALI TP E EDHVF+IEA+P  A+ V ++I+  A++IT N+          L NI+   G       +   R  LAT  I VP+ +VG++IGT GSIITT+QK+TGTEI+SPPKD   +  +  A FEI VY+ N T++ +E A  +I  AKQLIAH+ M   ++     +P S+                +GN   +          S  W+W ++ R++D  A E++ RIL  SK K
Sbjct:   46 DYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQ-NYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVGRIIGTHGSIITTIQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQE-AVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRILEESKKK 370

[Close]

BLAST of RNA-binding protein MEX3B vs. Planmine SMEST
Match: SMESG000071674.1 (SMESG000071674.1)

HSP 1 Score: 204.912 bits (520), Expect = 1.859e-55
Identity = 131/327 (40.06%), Postives = 186/327 (56.88%), Query Frame = 1

Query:  610 EYQSMASKMGFLVGQDLDEVLNRSA-TMKNSNSSRISNFFKHKHGSSGSHLTQKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITRNK----------LGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDT-ADFEISVYE-NGTVNSEETAWLQIHRAKQLIAHLVMRVWDQQPRNSTPSSD----------------EGNCTPNT--------CSPEWIWPEVSRMDDGDAKEIIDRILRSSKAK 1479
            +Y   A   GF+VG +L+ V  +S  ++    S+ IS  F+  +G   + + Q  Y  +GVRVP+KEHVSEIVGK+G KIK IR+ TGALI TP E EDHVF+IEA+P  A+ V ++I+  A++IT N+          L NI+   G       +   R  LAT  I VP+ +VG++IGT GSIITT+QK+TGTEI+SPPKD   +  +  A FEI VY+ N T++ +E A  +I  AKQLIAH+ M   ++     +P S+                +GN   +          S  W+W ++ R++D  A E++ RIL  SK K
Sbjct:   51 DYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQ-NYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVGRIIGTHGSIITTIQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQE-AVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRILEESKKK 375

The following BLAST results are available for this feature:

BLAST of RNA-binding protein MEX3B vs. Ensembl Human
BLAST of RNA-binding protein MEX3B vs. Ensembl Celegans
BLAST of RNA-binding protein MEX3B vs. Ensembl Fly
BLAST of RNA-binding protein MEX3B vs. Ensembl Zebrafish
BLAST of RNA-binding protein MEX3B vs. Ensembl Xenopus
BLAST of RNA-binding protein MEX3B vs. Ensembl Mouse
BLAST of RNA-binding protein MEX3B vs. UniProt/SwissProt
BLAST of RNA-binding protein MEX3B vs. TrEMBL
BLAST of RNA-binding protein MEX3B vs. Ensembl Cavefish
BLAST of RNA-binding protein MEX3B vs. Ensembl Sea Lamprey
BLAST of RNA-binding protein MEX3B vs. Ensembl Yeast
BLAST of RNA-binding protein MEX3B vs. Ensembl Nematostella
BLAST of RNA-binding protein MEX3B vs. Ensembl Medaka
BLAST of RNA-binding protein MEX3B vs. Planmine SMEST

BLAST of RNA-binding protein MEX3B vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
MEX3D	1.063e-13	32.57	mex-3 RNA binding family member D [Source:HGNC Sym...	[more]
MEX3D	1.273e-13	36.69	mex-3 RNA binding family member D [Source:HGNC Sym...	[more]
MEX3C	1.996e-13	34.53	mex-3 RNA binding family member C [Source:HGNC Sym...	[more]
MEX3B	4.335e-13	38.85	mex-3 RNA binding family member B [Source:HGNC Sym...	[more]
MEX3C	5.162e-13	34.53	mex-3 RNA binding family member C [Source:HGNC Sym...	[more]

BLAST of RNA-binding protein MEX3B vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2


Match Name	E-value	Identity	Description
mex-3	1.770e-12	32.84	Muscle EXcess [Source:UniProtKB/TrEMBL;Acc:V6CKQ3...	[more]
mex-3	1.319e-11	31.58	Muscle EXcess [Source:UniProtKB/TrEMBL;Acc:V6CKQ3...	[more]

BLAST of RNA-binding protein MEX3B vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4


Match Name	E-value	Identity	Description
CG11360	9.644e-13	30.20	gene:FBgn0039920 transcript:FBtr0310539	[more]
CG11360	9.644e-13	30.20	gene:FBgn0039920 transcript:FBtr0310540	[more]
CG11360	9.644e-13	30.20	gene:FBgn0039920 transcript:FBtr0310541	[more]
CG11360	9.644e-13	30.20	gene:FBgn0039920 transcript:FBtr0089091	[more]

BLAST of RNA-binding protein MEX3B vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2


Match Name	E-value	Identity	Description
mex3b	3.517e-13	33.15	mex-3 RNA binding family member B [Source:ZFIN;Acc...	[more]
FO082781.1	4.993e-13	33.66	mex-3 RNA binding family member A [Source:NCBI gen...	[more]

BLAST of RNA-binding protein MEX3B vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
mex3d	1.599e-15	37.86	mex-3 RNA binding family member D [Source:NCBI gen...	[more]
mex3d	1.850e-15	37.86	mex-3 RNA binding family member D [Source:NCBI gen...	[more]
MEX3B	3.277e-15	38.13	mex-3 RNA binding family member B [Source:NCBI gen...	[more]
atp6ap2	6.557e-13	34.97	ATPase, H+ transporting, lysosomal accessory prote...	[more]
MEX3A	5.321e-6	31.97	mex-3 RNA binding family member A [Source:HGNC Sym...	[more]

BLAST of RNA-binding protein MEX3B vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Mex3d	1.166e-14	33.16	mex3 RNA binding family member D [Source:MGI Symbo...	[more]
Mex3b	3.322e-13	38.85	mex3 RNA binding family member B [Source:MGI Symbo...	[more]
Mex3c	4.094e-13	34.53	mex3 RNA binding family member C [Source:MGI Symbo...	[more]
Mex3a	1.582e-12	30.59	mex3 RNA binding family member A [Source:MGI Symbo...	[more]

BLAST of RNA-binding protein MEX3B vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|A1L3F4\|MEX3B_XENLA	6.355e-15	38.13	RNA-binding protein MEX3B OS=Xenopus laevis OX=835...	[more]
sp\|Q3UE17\|MEX3D_MOUSE	4.546e-13	31.72	RNA-binding protein MEX3D OS=Mus musculus OX=10090...	[more]
sp\|Q86XN8\|MEX3D_HUMAN	5.103e-13	32.57	RNA-binding protein MEX3D OS=Homo sapiens OX=9606 ...	[more]
sp\|Q6ZN04\|MEX3B_HUMAN	2.082e-12	38.85	RNA-binding protein MEX3B OS=Homo sapiens OX=9606 ...	[more]
sp\|Q5U5Q3\|MEX3C_HUMAN	2.479e-12	34.53	RNA-binding E3 ubiquitin-protein ligase MEX3C OS=H...	[more]

BLAST of RNA-binding protein MEX3B vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0R3UGA8	5.647e-62	39.10	Uncharacterized protein OS=Mesocestoides corti OX=...	[more]
A0A0R3T6J8	3.189e-37	31.55	Uncharacterized protein OS=Rodentolepis nana OX=10...	[more]
A0A183L5V8	1.393e-32	37.74	KH domain-containing protein OS=Schistosoma curass...	[more]
A0A3P8H840	1.486e-32	37.74	KH domain-containing protein OS=Schistosoma curass...	[more]
A0A1S8WYK3	4.658e-32	49.08	KH domain protein (Fragment) OS=Opisthorchis viver...	[more]

BLAST of RNA-binding protein MEX3B vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
ENSAMXT00000025356.2	6.285e-15	35.82	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
mex3b	2.487e-13	33.52	mex-3 RNA binding family member B [Source:NCBI gen...	[more]
MEX3D	4.446e-10	30.63	mex-3 RNA binding family member D [Source:HGNC Sym...	[more]

BLAST of RNA-binding protein MEX3B vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
mex3b	4.178e-6	26.57	mex-3 RNA binding family member B [Source:ZFIN;Acc...	[more]

BLAST of RNA-binding protein MEX3B vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of RNA-binding protein MEX3B vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO32414	2.320e-13	33.33	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of RNA-binding protein MEX3B vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4


Match Name	E-value	Identity	Description
ENSORLT00000028704.1	8.481e-15	37.27	mex-3 RNA binding family member A [Source:NCBI gen...	[more]
ENSORLT00000006291.2	4.961e-13	35.97	RNA-binding protein MEX3B [Source:NCBI gene;Acc:10...	[more]
MEX3D	5.430e-10	32.09	mex-3 RNA binding family member D [Source:NCBI gen...	[more]
MEX3D	8.339e-10	32.09	mex-3 RNA binding family member D [Source:NCBI gen...	[more]

BLAST of RNA-binding protein MEX3B vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000025422.1	0.000e+0	99.75	SMESG000025422.1	[more]
SMESG000062702.1	2.663e-60	40.83	SMESG000062702.1	[more]
SMESG000062702.1	2.748e-60	40.83	SMESG000062702.1	[more]
SMESG000071674.1	1.649e-55	40.06	SMESG000071674.1	[more]
SMESG000071674.1	1.859e-55	40.06	SMESG000071674.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30033302 ID=SMED30033302|Name=RNA-binding protein MEX3B|organism=Schmidtea mediterranea sexual|type=transcript|length=4165bp
TCTATATAAATCTTATATGACAATTTTGTTAGTATTCATCCGATGTTAAG
TGCTTCGTTCAACCAAACACCAAATCAAGGCCTTCGATTTAATTTATCAG
ATAATTCAATGAATGAATTCTCATCTCAAATCGGATATCACGAAAATTAT
ATCCCTAAACCAGAAATGTATAATCAATTTTATAACCAAACCAGTCATTT
TATGCAAAGTTTAAATCAAGATTCTAAGATGTATTCTATTTCTGAAGTAG
ATTCCCTACACCACCATTCCAACAGTAATTCCATTTCGAATGACATGTCC
CAATTAGATCACAACAAAGATTTTGATTATATCTTATCTTCGAGACTTCA
AGCCATGAATATCAAACCTAATTGTAATATAAGCCGATCAAACAGTGCAC
ATAATTCTCCTTATGATAATCGGGTTACTCCGCGTCACTTTTCACAGTCG
ACATCAAATACACCACTTCCCGTTTCAAACCGATTAGGTCGAGAAATGGA
CATGATGAGATTAAATGCTCCAATAATGCAGTTATTCCCTCAGAATTCTC
CCAGCTCAAATCCAGTAAATTCGTACTCAATGAGCAGACAAAGTCCCGTG
GAATTAATTGAATATCAATCAATGGCGTCGAAAATGGGATTTCTTGTCGG
GCAAGATTTAGATGAAGTGCTTAATCGTTCTGCGACAATGAAAAATAGCA
ATAGTAGCCGGATTTCTAACTTCTTCAAACACAAACACGGCAGCTCAGGG
TCTCATTTAACCCAAAAGCAATATTTGGTACTGGGTGTTCGCGTTCCCAG
TAAGGAGCATGTCTCAGAAATCGTGGGAAAAGAAGGCAAAAAAATCAAAA
CGATCCGCCAAACAACAGGCGCATTGATCGCCACTCCGAACGAGAAAGAG
GATCACGTTTTCCTGATCGAAGCAGTTCCAGAAACTGCAATTAAAGTCGG
ACAGATTATCCAGCAATTAGCCGATCAAATAACTCGCAATAAACTCGGTA
ACATCGCCGGTTTAATGGGAGAGCGACCTCGTAGTCCTCCTATGCTCGGC
AACCGAACGCCATTGGCAACGGCAACAATTGGGGTACCGCAGCGACTGGT
TGGCAAGGTTATTGGTACGCAAGGATCGATCATCACGACAGTACAGAAAG
AAACTGGAACTGAGATTAAAAGTCCCCCGAAGGATGAGTTGCGTGCTCCT
GGAGACACGGCAGATTTTGAGATATCAGTTTATGAGAATGGAACTGTGAA
CAGTGAAGAAACCGCTTGGCTGCAAATCCATCGGGCCAAGCAATTAATAG
CCCATCTTGTAATGCGAGTTTGGGATCAGCAGCCCCGCAATTCCACTCCG
TCGAGTGACGAGGGCAACTGCACCCCGAATACTTGCAGCCCCGAATGGAT
TTGGCCCGAAGTGTCTCGCATGGACGACGGAGATGCCAAAGAAATCATTG
ATCGAATCTTGCGGTCATCGAAAGCGAAAATCACCCCATCGACCAGCTCA
ACGGAAGGAACGAATATTGACGGTCTCGTCATGCCGCCTCCAACGAGCAC
TGGCATGTCTCCCCAGTTCTCTATGTCGTCTCTCCATGACTCCAATAAGC
AGCAATCATCATCAGGCTTCCATTCTCTCAATTCTACCCCGTTCAAAATG
ATGCCCGAGGACAGCTGGAACCGTAACAGCATTTCCGACTGTTACTCGTC
ATCAACTGATGCTCAAGTTCGCAACCGACTCAACGTATTCAAAGATACTC
CTGTATTTTATCCACCACAATACTCAAATATGCAGCCGTCGATGTCCGGT
GGAGATTCCCATCACCGCGCGACAGCGGGCAGCAATCACTATTACCCTAG
CAATGACAGCGCCTTCTACGATTCGTATTATCCAAGCGTCTATTCTCCGC
CTTCCAATCGCGACAGTAACCAACAGTTGTTCCTGTCAGATAACAACTAC
ATTCTCGACCACCTTTCGGCCGATTCCCCGCCGCCCAATTGCAATAATAA
CAACAGTAATCATCACCTTGTCAACGGCAATAACTCGGATTCCTGGGCCG
CATCGAAACCCGGTTTCTATTCGAATGGGAACCCCAACAATAGCAGCAAC
GGTGTTGGAGGCTGTTGCAACCACCAAAACTATGCCGACGACACCCGATT
CGGCAATGTGAAATATCTCTGGAAGAATTGTCCTAGTGATTCGAATCACG
ATTCCGTCGCGTCCTGGGCATCGAAACTTGATAACAACAATGGCGGTAGT
AATGGAGGTATCGATAATCATCACCATCAGCAGCAGCAGCAAGTCTCATC
AGCACCCGTTGCCACGGCTGCTGGCGTCCTCCTACGACAATCCCATCGGA
CAATTGCACCGCCTCCCGAATCGATGTTCGGCACGATCGGGGACGGACGG
AAACGCAACTCGGCCGCTAGTAACAGCGATGAAAGAGAAGATTTATAAAT
TGAAATTTAATTAATTAATCAAGAGTTAAATTAATCCAGAACAAATATTC
TACCGACATTAGAGTTGATGATTTATAGAAATATATTGATGTCCTTGTAC
TATTTATTGATTTTTGTTTCCTCTCTGTGTTTGTACCGTTGTTCCCCTTG
TTTACCGTTATTATTATTATTCCTGTGTTTTCACTTTTATATTGCGCGTG
CTATTCGGTTCGATTGCGTTACTAGATGTCTACTCGATTAGTTTATGTAT
ATATATTGCTATTATTATTTGATTGTGTTACCGTGGTGATGAGAGTTATT
TGGGGACTATTTATAAATATATCAGCCTCATGAACTATCAATTCACGATT
TTACTCTTGTTTGAGCACAAGTTTATATATTTTATTATTATTGATTATTT
GGTGATGGCAGAAACTACAAGAGTTGTATTACATTTTTTCTCTGTTTGAA
AATGTTTTTATTCTGAGTTATTGAGAATAATTTTTTCCGTTTGTAATGAT
TTGAATTATTATTATTAAATTAATTATATTGATTATTGCTGTTGTTTGAT
GAATGTGCAAATGTTCTCTTTCTATATATTTATTTAGATATCCGTCTGCA
TTTACCTTGGTTTCAATCTGCGTGTAATTGTACTATACATATTATATATA
ACCACATTGCTTATCATTTGTTAATTGGCATTTACTCCTCTATTGATGGA
TAATGTGCAACCGTTGGTGCTTGCAGTTTCAAACATATATCTATATTTGT
TTGGTAAATTTTATAAATGTAAGATTCGTGTATAGTTTGATGTTCTTTTT
TATTGTTATTACTATTGTTATTATTATTATATTTTTCTAAAAGAATATTT
GCGCATTGATTTCTTTGCTGGGTTCAACAGAAGTGGAATAATTGTTCTAG
TTGTGTTTAATTTGTTTATCGAATTCATATTGTAAGATGTCACAAAATAT
TTTCTGATTTCATTATATCCATCATATAGCAGCAGTTGCGGTATCCGGTA
CAACGGTGTACCATCGATAAACATTTTATGTTATAAACAAGTTAAGCTTG
GCTCGTGTGTGTGTATGTAGATAGATGTTTTTGATTTTTTTTCCTTCGAG
TTATCATCAACAATCAGTGGTTAATCTTATTTATCCAGATAATACAATGC
AAATCGCAGATTATTTCTATTTAAGCTTGATGACATAATATATTTGGCTT
TGAAGAAATATATAGAGAAATAGAATTTGATGGTGAACATTATTTTGAAT
TTGAAAATGAATAATAACAACAATAACATTCGAGTGAAATTTGTATGTAA
TTCTGTTGTTACTATTATTGGCAGTTTTTATTTTTCTAATATTTTTGTAC
ATTTTCAGTTTTGATAAATAACTGTTTCTGTAGGTAGTTTGAAATTATTA
TTATTATTATTATGTTAATTGTATTGTTTTTTCTGGCCGCCAAACTACCG
TAAGAAAACGAGAAAAGTAAACCAGCTGTAATATGAGAGTCTAAATCACT
AGAGTACCAATTAATTTTTGTGTTCCTGTTACTTGTTAGAATATTTCTTG
CTGCTTAGCTCCAGGATCATTTATCGACTATTTTCAAAATGATAATTTAT
ATTATCCATGTTGCATTGCTGGTTCAAGTTTTGTAATTGATTTTTTAGCC
CTATTATTTGAATTATTGTTGTAGCAATTATTTTATTTAAATAAATGAGT
TTATCTTAAAAAAAA

protein sequence of SMED30033302-orf-1

>SMED30033302-orf-1 ID=SMED30033302-orf-1|Name=SMED30033302-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=802bp
MLSASFNQTPNQGLRFNLSDNSMNEFSSQIGYHENYIPKPEMYNQFYNQT
SHFMQSLNQDSKMYSISEVDSLHHHSNSNSISNDMSQLDHNKDFDYILSS
RLQAMNIKPNCNISRSNSAHNSPYDNRVTPRHFSQSTSNTPLPVSNRLGR
EMDMMRLNAPIMQLFPQNSPSSNPVNSYSMSRQSPVELIEYQSMASKMGF
LVGQDLDEVLNRSATMKNSNSSRISNFFKHKHGSSGSHLTQKQYLVLGVR
VPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAI
KVGQIIQQLADQITRNKLGNIAGLMGERPRSPPMLGNRTPLATATIGVPQ
RLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENG
TVNSEETAWLQIHRAKQLIAHLVMRVWDQQPRNSTPSSDEGNCTPNTCSP
EWIWPEVSRMDDGDAKEIIDRILRSSKAKITPSTSSTEGTNIDGLVMPPP
TSTGMSPQFSMSSLHDSNKQQSSSGFHSLNSTPFKMMPEDSWNRNSISDC
YSSSTDAQVRNRLNVFKDTPVFYPPQYSNMQPSMSGGDSHHRATAGSNHY
YPSNDSAFYDSYYPSVYSPPSNRDSNQQLFLSDNNYILDHLSADSPPPNC
NNNNSNHHLVNGNNSDSWAASKPGFYSNGNPNNSSNGVGGCCNHQNYADD
TRFGNVKYLWKNCPSDSNHDSVASWASKLDNNNGGSNGGIDNHHHQQQQQ
VSSAPVATAAGVLLRQSHRTIAPPPESMFGTIGDGRKRNSAASNSDERED
L*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000020	protonephridia
PLANA:0000028	Category 2 cell
PLANA:0000034	epidermis
PLANA:0000099	neuron
PLANA:0000101	muscle cell
PLANA:0000429	neoblast
PLANA:0002032	epidermal cell
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell
PLANA:0003116	parenchymal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR036612	KH_dom_type_1_sf
IPR001002	Chitin-bd_1
IPR004087	KH_dom
IPR004088	KH_dom_type_1

Vocabulary: **molecular function**
Term	Definition
GO:0008061	chitin binding
GO:0003676	nucleic acid binding
GO:0003723	RNA binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 251..319 e-value: 1.9E-5 score: 34.1 coord: 348..428 e-value: 1.7E-5 score: 34.3
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 257..301 e-value: 1.7E-5 score: 24.5 coord: 352..397 e-value: 1.1E-7 score: 31.6
IPR036612	K Homology domain, type 1 superfamily	GENE3D	G3DSA:3.30.1370.10		coord: 345..434 e-value: 1.7E-9 score: 39.1
IPR036612	K Homology domain, type 1 superfamily	GENE3D	G3DSA:3.30.1370.10		coord: 255..317 e-value: 4.7E-7 score: 31.6
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 257..324
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 339..396
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 516..538
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 774..809
None	No IPR available	PANTHER	PTHR23285:SF17	MEX-3 RNA BINDING FAMILY MEMBER A	coord: 256..390
None	No IPR available	PANTHER	PTHR23285	RING FINGER AND KH DOMAIN CONTAINING PROTEIN 1	coord: 256..390
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 349..427 score: 11.783
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 262..314 score: 9.624
None	No IPR available	CDD	cd00105	KH-I	coord: 257..315 e-value: 6.72825E-6 score: 42.1619
None	No IPR available	CDD	cd00105	KH-I	coord: 351..427 e-value: 2.5637E-7 score: 46.3991

Main menu

RNA-binding protein MEX3B

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 20

Owlery

blazegraph-runner