Intermediate filament b
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Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30033119 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 11Note: Hover over icons to view figure legend
Homology
BLAST of Intermediate filament b vs. Ensembl Human
Match: LMNB2 (lamin B2 [Source:HGNC Symbol;Acc:HGNC:6638]) HSP 1 Score: 128.642 bits (322), Expect = 1.498e-30 Identity = 150/557 (26.93%), Postives = 263/557 (47.22%), Query Frame = 2
Query: 275 REKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTL--------------EDLILEAQTELNDATQL-HLADKETIDKMASTLSD---YEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIF-----ESEVRELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQV-------TSVIKGEMSAKTSF----QRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPEC---SESNWGFGAQIVTVLQNSKGEEKATHT 1834
R +EK EL++LNDR A+YID+VR LE EN RL ++ + ++ +E + IK Y++++ RR LD+ +A+++++I L E + AQ + D L H ++ E +A+ LSD E ++A LR +L K D + K+ LEKETL + N QSL ++++F K +F E+ R LV DS+ +++ +MAQAL ++++++D ++ ++E Y K+ + + Q + REE + +L + +L L+ + + E + L + + +F + +E+ + ++ L E Q LLD KL+L++EI AYRK+LEGEE R+ + + T + + ++ + + + +V SV+ F Q +A G+V+I+E +GKF+ L+N +++ + + ++R G + P K IL + +WA G S +S+WG G TVL N+ GEE A T
Sbjct: 43 RLQEKEELRELNDRLAHYIDRVRALELENDRLLLKISEKEEVTTREVSGIKALYESELADARRVLDETARERARLQIEIGKLRAELDEVNKSAKKREGELTVAQGRVKDLESLFHRSEVE----LAAALSDKRGLESDVAELRAQLA-----KAEDGHAVA---------KKQLEKETLMRVDLENRCQSLQEELDFRKSVFEEEVRETRRRHERRLVEVDSSRQQEY-DFKMAQALEELRSQHDEQVRLYKLELEQTYQAKLDSAKLSSDQNDKAASAAREELKEARMRLESLSYQLSGLQKQASAAEDRIRELEEAMAGERDKFRKMLDAKEQEMTEMRDVMQQQLAEYQELLDVKLALDMEINAYRKLLEGEEERLKLSPSPSSRVTVSRATSSSSGSLSATGRLGRSKRKRLEVEEPLGSGPSVLGTGTGGSGGFHLAQQASASGSVSIEEIDLEGKFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTP-KYILRA---GQMVTVWAAGAGVAHSPPSTLVWKGQSSWGTGESFRTVLVNADGEEVAMRT 576
BLAST of Intermediate filament b vs. Ensembl Human
Match: VIM (vimentin [Source:HGNC Symbol;Acc:HGNC:12692]) HSP 1 Score: 93.5893 bits (231), Expect = 1.710e-19 Identity = 113/389 (29.05%), Postives = 192/389 (49.36%), Query Frame = 2
Query: 212 SSTPG------ATSNIVHNGVNN-LMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLL---KQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTE-NKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVN 1345
SS PG + + + +N N R EK ELQ+LNDRFANYIDKVR LE +NK L EL LK Q GK +R+ Y+ +M +LRR +DQ KA++E++ + L + +I LR++L +E+++ +E N L +QD++ +L + +++SL ++I FLKK+ E E++EL + + + + + D + ++ ALRD++ +Y+ + E Y K ++ ++ N Q ++E+T + Q+ + + L+ N LER + + + + L+ E+ N K E+ L E Q LL+ K++L++EI YRK+LEGEE R++
Sbjct: 72 SSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQ-GK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE-----------------------------------DIMRLREKL----------QEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIS 412
BLAST of Intermediate filament b vs. Ensembl Human
Match: VIM (vimentin [Source:HGNC Symbol;Acc:HGNC:12692]) HSP 1 Score: 93.5893 bits (231), Expect = 1.710e-19 Identity = 113/389 (29.05%), Postives = 192/389 (49.36%), Query Frame = 2
Query: 212 SSTPG------ATSNIVHNGVNN-LMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLL---KQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTE-NKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVN 1345
SS PG + + + +N N R EK ELQ+LNDRFANYIDKVR LE +NK L EL LK Q GK +R+ Y+ +M +LRR +DQ KA++E++ + L + +I LR++L +E+++ +E N L +QD++ +L + +++SL ++I FLKK+ E E++EL + + + + + D + ++ ALRD++ +Y+ + E Y K ++ ++ N Q ++E+T + Q+ + + L+ N LER + + + + L+ E+ N K E+ L E Q LL+ K++L++EI YRK+LEGEE R++
Sbjct: 72 SSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQ-GK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE-----------------------------------DIMRLREKL----------QEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIS 412
BLAST of Intermediate filament b vs. Ensembl Human
Match: VIM (vimentin [Source:HGNC Symbol;Acc:HGNC:12692]) HSP 1 Score: 92.8189 bits (229), Expect = 2.045e-19 Identity = 115/386 (29.79%), Postives = 192/386 (49.74%), Query Frame = 2
Query: 212 SSTPG------ATSNIVHNGVNN-LMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTE-NKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVN 1345
SS PG + + + +N N R EK ELQ+LNDRFANYIDKVR LE +NK L EL LK Q GK +R+ Y+ +M +LRR +DQ KA++E++ + L + I+ L + Q + +E + +TL + ++ DN + RL DLE+ +++SL ++I FLKK+ E E++EL + + + + + D + ++ ALRD++ +Y+ + E Y K ++ ++ N Q ++E+T + Q+ + + L+ N LER + + + + L+ E+ N K E+ L E Q LL+ K++L++EI YRK+LEGEE R++
Sbjct: 72 SSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQ-GK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIM----RLREKLQEEMLQREEAE---NTLQSFRQDV----------------DNASLARL---------DLER----------KVESLQEEIAFLKKLHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIS 412
BLAST of Intermediate filament b vs. Ensembl Human
Match: LMNB1 (lamin B1 [Source:HGNC Symbol;Acc:HGNC:6637]) HSP 1 Score: 88.9669 bits (219), Expect = 6.945e-18 Identity = 86/273 (31.50%), Postives = 143/273 (52.38%), Query Frame = 2
Query: 272 GREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQA--EGAKAQMEM-KINTLEDLIL----EAQTELNDATQLHLADKETI-----DKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVREL-----ASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETV 1039
R +EK EL++LNDR A YIDKVR+LE EN L ++ + ++ G+E +K Y+ ++ RR+LD E AK Q+E+ K D +L + +++LN A Q+ L + E +A+ L D +K L G + E ++D +I +L+ L K+ L ETL + N QSL + +EF K ++E E+ E LV DS ++ ++AQAL +++ ++D ++ ++E Y K++ R + S+ N TV
Sbjct: 28 SRLQEKEELRELNDRLAVYIDKVRSLETENSALQLQVTEREEVRGRELTGLKALYETELADARRALDDTARERAKLQIELGKCKAEHDQLLLNYAKKESDLNGA-QIKLREYEAALNSKDAALATALGD--------KKSLEG-DLEDLKD--QIAQLEASLAAAKKQLADETLLKVDLENRCQSLTEDLEFRKSMYEEEINETRRKHETRLVEVDSGRQIEY-EYKLAQALHEMREQHDAQVRLYKEELEQTYHAKLENARLS-SEMNTSTV 286 HSP 2 Score: 66.6254 bits (161), Expect = 7.976e-11 Identity = 60/201 (29.85%), Postives = 98/201 (48.76%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSV----IKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPEC---SESNWGFGAQIVTVLQNSKGEEKATHTQRTVYQ 1852
D KL+L++EI AYRK+LEGEE R+ S VT + S + +T+ + V + S S +A GNV I+E DGKFI L+NT Q++ + G+ + R + + K+ S+ +L+ + IWA S + ++++WG G + +L+NS+GEE A + TV++
Sbjct: 365 DVKLALDMEISAYRKLLEGEEERLKL-----------SPSPSSRVTVSRASSSRSVRTTRGKRKRVDVEESEASSSVSISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYT--SRYVLKA---GQTVTIWAANAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVAQRS--TVFK 547
BLAST of Intermediate filament b vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 291.197 bits (744), Expect = 4.494e-90 Identity = 210/577 (36.40%), Postives = 351/577 (60.83%), Query Frame = 2
Query: 134 GPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDST-ENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRT-SISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTG-SQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPE-----CSESNWGFGAQIVTVLQNSKGEEKATHTQR 1840
G T V +Q EM G +P N + + + RE+EK E+ DLNDR A+YI+KVR LE +N++L+ +L L+ +WGK+T I+ Y+ +++ ++ +D+ + ME ++ ++D + E + +L DAT+ D+ ID + TLS+ E EI+ L++R+ LE+E R +E RL EL + DL++ETL I N++Q+L+++I+FL+++ ++E++EL +L +D+T EN++F++NE++ A+RDI+ EYD+ + DME+ Y LK+QEI+T +++N+E +EE RL+ QL+++R +L +LE+RN+ LE+ ++ L ++E+ R ++ N+ ++ + E + +++ELQ+LLD K +L+ EI YRKMLEGEE R K ++ V +T +I+Q+ T T+ V+KGE +++ SFQR+AKGNV+I E SPDGKFI+L+NT +++E I + L+R D R + + +P +L GK KI+AR QG P +E ++G G + T+L N +GEE+ATH QR
Sbjct: 24 GRTTGNVTSQDRMLKIVTEMRSGAGSGLSPFG-----QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQ------------LVEQVVKTHAITQE-----TDTETMRVVKGETASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRA-GKT--LKIFARN---QGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQR 571
BLAST of Intermediate filament b vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 290.812 bits (743), Expect = 5.066e-90 Identity = 210/577 (36.40%), Postives = 351/577 (60.83%), Query Frame = 2
Query: 134 GPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDST-ENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRT-SISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTG-SQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPE-----CSESNWGFGAQIVTVLQNSKGEEKATHTQR 1840
G T V +Q EM G +P N + + + RE+EK E+ DLNDR A+YI+KVR LE +N++L+ +L L+ +WGK+T I+ Y+ +++ ++ +D+ + ME ++ ++D + E + +L DAT+ D+ ID + TLS+ E EI+ L++R+ LE+E R +E RL EL + DL++ETL I N++Q+L+++I+FL+++ ++E++EL +L +D+T EN++F++NE++ A+RDI+ EYD+ + DME+ Y LK+QEI+T +++N+E +EE RL+ QL+++R +L +LE+RN+ LE+ ++ L ++E+ R ++ N+ ++ + E + +++ELQ+LLD K +L+ EI YRKMLEGEE R K ++ V +T +I+Q+ T T+ V+KGE +++ SFQR+AKGNV+I E SPDGKFI+L+NT +++E I + L+R D R + + +P +L GK KI+AR QG P +E ++G G + T+L N +GEE+ATH QR
Sbjct: 16 GRTTGNVTSQDRMLKIVTEMRSGAGSGLSPFG-----QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQ------------LVEQVVKTHAITQE-----TDTETMRVVKGETASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRA-GKT--LKIFARN---QGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQR 563
BLAST of Intermediate filament b vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 290.812 bits (743), Expect = 5.066e-90 Identity = 210/577 (36.40%), Postives = 351/577 (60.83%), Query Frame = 2
Query: 134 GPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDST-ENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRT-SISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTG-SQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPE-----CSESNWGFGAQIVTVLQNSKGEEKATHTQR 1840
G T V +Q EM G +P N + + + RE+EK E+ DLNDR A+YI+KVR LE +N++L+ +L L+ +WGK+T I+ Y+ +++ ++ +D+ + ME ++ ++D + E + +L DAT+ D+ ID + TLS+ E EI+ L++R+ LE+E R +E RL EL + DL++ETL I N++Q+L+++I+FL+++ ++E++EL +L +D+T EN++F++NE++ A+RDI+ EYD+ + DME+ Y LK+QEI+T +++N+E +EE RL+ QL+++R +L +LE+RN+ LE+ ++ L ++E+ R ++ N+ ++ + E + +++ELQ+LLD K +L+ EI YRKMLEGEE R K ++ V +T +I+Q+ T T+ V+KGE +++ SFQR+AKGNV+I E SPDGKFI+L+NT +++E I + L+R D R + + +P +L GK KI+AR QG P +E ++G G + T+L N +GEE+ATH QR
Sbjct: 16 GRTTGNVTSQDRMLKIVTEMRSGAGSGLSPFG-----QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQ------------LVEQVVKTHAITQE-----TDTETMRVVKGETASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRA-GKT--LKIFARN---QGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQR 563
BLAST of Intermediate filament b vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 290.812 bits (743), Expect = 5.066e-90 Identity = 210/577 (36.40%), Postives = 351/577 (60.83%), Query Frame = 2
Query: 134 GPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDST-ENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRT-SISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTG-SQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPE-----CSESNWGFGAQIVTVLQNSKGEEKATHTQR 1840
G T V +Q EM G +P N + + + RE+EK E+ DLNDR A+YI+KVR LE +N++L+ +L L+ +WGK+T I+ Y+ +++ ++ +D+ + ME ++ ++D + E + +L DAT+ D+ ID + TLS+ E EI+ L++R+ LE+E R +E RL EL + DL++ETL I N++Q+L+++I+FL+++ ++E++EL +L +D+T EN++F++NE++ A+RDI+ EYD+ + DME+ Y LK+QEI+T +++N+E +EE RL+ QL+++R +L +LE+RN+ LE+ ++ L ++E+ R ++ N+ ++ + E + +++ELQ+LLD K +L+ EI YRKMLEGEE R K ++ V +T +I+Q+ T T+ V+KGE +++ SFQR+AKGNV+I E SPDGKFI+L+NT +++E I + L+R D R + + +P +L GK KI+AR QG P +E ++G G + T+L N +GEE+ATH QR
Sbjct: 16 GRTTGNVTSQDRMLKIVTEMRSGAGSGLSPFG-----QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQ------------LVEQVVKTHAITQE-----TDTETMRVVKGETASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRA-GKT--LKIFARN---QGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQR 563
BLAST of Intermediate filament b vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 290.812 bits (743), Expect = 5.550e-90 Identity = 210/577 (36.40%), Postives = 351/577 (60.83%), Query Frame = 2
Query: 134 GPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDST-ENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRT-SISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTG-SQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPE-----CSESNWGFGAQIVTVLQNSKGEEKATHTQR 1840
G T V +Q EM G +P N + + + RE+EK E+ DLNDR A+YI+KVR LE +N++L+ +L L+ +WGK+T I+ Y+ +++ ++ +D+ + ME ++ ++D + E + +L DAT+ D+ ID + TLS+ E EI+ L++R+ LE+E R +E RL EL + DL++ETL I N++Q+L+++I+FL+++ ++E++EL +L +D+T EN++F++NE++ A+RDI+ EYD+ + DME+ Y LK+QEI+T +++N+E +EE RL+ QL+++R +L +LE+RN+ LE+ ++ L ++E+ R ++ N+ ++ + E + +++ELQ+LLD K +L+ EI YRKMLEGEE R K ++ V +T +I+Q+ T T+ V+KGE +++ SFQR+AKGNV+I E SPDGKFI+L+NT +++E I + L+R D R + + +P +L GK KI+AR QG P +E ++G G + T+L N +GEE+ATH QR
Sbjct: 24 GRTTGNVTSQDRMLKIVTEMRSGAGSGLSPFG-----QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQ------------LVEQVVKTHAITQE-----TDTETMRVVKGETASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRA-GKT--LKIFARN---QGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQR 571
BLAST of Intermediate filament b vs. Ensembl Fly
Match: Lam (gene:FBgn0002525 transcript:FBtr0346460) HSP 1 Score: 89.7373 bits (221), Expect = 2.510e-18 Identity = 73/246 (29.67%), Postives = 130/246 (52.85%), Query Frame = 2
Query: 269 NGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETI---DKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQ 997
+ R EK ELQ+LNDR A YID+VRNLE EN RL+ E+ +D +ET IK ++ ++++ RR LD +A+ E+ I L + E + +L+ T+ + + + A+ L++ ++ RK+L E + KE+ RL+++ +++LE+ETL + N +QSL +++ F +I E+ E++ + E ++ + +EYD KL ++ AQY ++Q
Sbjct: 49 HSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEAL---KELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEI-----------NESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQ 280 HSP 2 Score: 76.6406 bits (187), Expect = 3.291e-14 Identity = 63/198 (31.82%), Postives = 93/198 (46.97%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSF--QRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTI-------LEPTGKNRYYKIWARGNRPQGSGDPECS----ESNWGFGAQIVTVLQNSKGEEKA 1825
D K+SL+LEI AY K+L GEE R+N N ++ + TR + S++ + + K + V + E + + +AKGNV I+E P+GKF+ L N GS+E I G+ LQR +I PS T +EP G +W+ + S +P S W T+L NS+GE A
Sbjct: 387 DIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATPSRRTPSAAVKRKRAVVDESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQR-------LINEKGPSTTYKFHRSVRIEPNG---VITVWSADTK--ASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVA 572
BLAST of Intermediate filament b vs. Ensembl Fly
Match: Lam (gene:FBgn0002525 transcript:FBtr0307059) HSP 1 Score: 89.7373 bits (221), Expect = 2.510e-18 Identity = 73/246 (29.67%), Postives = 130/246 (52.85%), Query Frame = 2
Query: 269 NGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETI---DKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQ 997
+ R EK ELQ+LNDR A YID+VRNLE EN RL+ E+ +D +ET IK ++ ++++ RR LD +A+ E+ I L + E + +L+ T+ + + + A+ L++ ++ RK+L E + KE+ RL+++ +++LE+ETL + N +QSL +++ F +I E+ E++ + E ++ + +EYD KL ++ AQY ++Q
Sbjct: 49 HSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEAL---KELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEI-----------NESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQ 280 HSP 2 Score: 76.6406 bits (187), Expect = 3.291e-14 Identity = 63/198 (31.82%), Postives = 93/198 (46.97%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSF--QRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTI-------LEPTGKNRYYKIWARGNRPQGSGDPECS----ESNWGFGAQIVTVLQNSKGEEKA 1825
D K+SL+LEI AY K+L GEE R+N N ++ + TR + S++ + + K + V + E + + +AKGNV I+E P+GKF+ L N GS+E I G+ LQR +I PS T +EP G +W+ + S +P S W T+L NS+GE A
Sbjct: 387 DIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATPSRRTPSAAVKRKRAVVDESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQR-------LINEKGPSTTYKFHRSVRIEPNG---VITVWSADTK--ASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVA 572
BLAST of Intermediate filament b vs. Ensembl Fly
Match: Lam (gene:FBgn0002525 transcript:FBtr0307058) HSP 1 Score: 89.7373 bits (221), Expect = 2.510e-18 Identity = 73/246 (29.67%), Postives = 130/246 (52.85%), Query Frame = 2
Query: 269 NGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETI---DKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQ 997
+ R EK ELQ+LNDR A YID+VRNLE EN RL+ E+ +D +ET IK ++ ++++ RR LD +A+ E+ I L + E + +L+ T+ + + + A+ L++ ++ RK+L E + KE+ RL+++ +++LE+ETL + N +QSL +++ F +I E+ E++ + E ++ + +EYD KL ++ AQY ++Q
Sbjct: 49 HSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEAL---KELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEI-----------NESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQ 280 HSP 2 Score: 76.6406 bits (187), Expect = 3.291e-14 Identity = 63/198 (31.82%), Postives = 93/198 (46.97%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSF--QRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTI-------LEPTGKNRYYKIWARGNRPQGSGDPECS----ESNWGFGAQIVTVLQNSKGEEKA 1825
D K+SL+LEI AY K+L GEE R+N N ++ + TR + S++ + + K + V + E + + +AKGNV I+E P+GKF+ L N GS+E I G+ LQR +I PS T +EP G +W+ + S +P S W T+L NS+GE A
Sbjct: 387 DIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATPSRRTPSAAVKRKRAVVDESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQR-------LINEKGPSTTYKFHRSVRIEPNG---VITVWSADTK--ASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVA 572
BLAST of Intermediate filament b vs. Ensembl Fly
Match: Lam (gene:FBgn0002525 transcript:FBtr0079100) HSP 1 Score: 89.7373 bits (221), Expect = 2.510e-18 Identity = 73/246 (29.67%), Postives = 130/246 (52.85%), Query Frame = 2
Query: 269 NGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETI---DKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQ 997
+ R EK ELQ+LNDR A YID+VRNLE EN RL+ E+ +D +ET IK ++ ++++ RR LD +A+ E+ I L + E + +L+ T+ + + + A+ L++ ++ RK+L E + KE+ RL+++ +++LE+ETL + N +QSL +++ F +I E+ E++ + E ++ + +EYD KL ++ AQY ++Q
Sbjct: 49 HSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEAL---KELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEI-----------NESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQ 280 HSP 2 Score: 76.6406 bits (187), Expect = 3.291e-14 Identity = 63/198 (31.82%), Postives = 93/198 (46.97%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSF--QRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTI-------LEPTGKNRYYKIWARGNRPQGSGDPECS----ESNWGFGAQIVTVLQNSKGEEKA 1825
D K+SL+LEI AY K+L GEE R+N N ++ + TR + S++ + + K + V + E + + +AKGNV I+E P+GKF+ L N GS+E I G+ LQR +I PS T +EP G +W+ + S +P S W T+L NS+GE A
Sbjct: 387 DIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATPSRRTPSAAVKRKRAVVDESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQR-------LINEKGPSTTYKFHRSVRIEPNG---VITVWSADTK--ASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVA 572
BLAST of Intermediate filament b vs. Ensembl Fly
Match: LamC (gene:FBgn0010397 transcript:FBtr0333166) HSP 1 Score: 86.6557 bits (213), Expect = 2.274e-17 Identity = 78/275 (28.36%), Postives = 141/275 (51.27%), Query Frame = 2
Query: 212 SSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTL----EDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTENKDF----WRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTT 1012
SS GATS + R++EK ELQ LNDR A YID++RNLE+EN RL+ EL +D +ET+ +K Y+ ++ R+ LD+ KA++E+ I L +DL + +AT + ++ Y +A+ RK+ +E +N+ RL+ +L+ L++ LE ETL + N+ QSL +++ F ++ E+ E S + +E + ++ Q+L++++ +Y+ ++ ++E Y +IQ ++
Sbjct: 27 SSRVGATS-----PTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLAD-RKKFEDQAKELALENE---RLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAA 292 HSP 2 Score: 57.7658 bits (138), Expect = 2.717e-8 Identity = 45/151 (29.80%), Postives = 69/151 (45.70%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQ-HAAPSTKTQVTSVIKGEMSAKT----------------SFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTI 1672
D K+SL+LEI AY K+L GEE R+N +S H+T ++ S+ PS + T I G + K S AKG++ I E +G+FI L N G++E +++G+ L R + + K SK +
Sbjct: 379 DIKVSLDLEIAAYDKLLCGEERRLNIESPGRPTTDSGISSNGSHLTASASSRSGRVTPSGRRSATPGISGSSAVKRRRTVIDESEDRTLSEYSVNAAAKGDLEIIEADVEGRFIKLHNKGTEEINLTGWQLTRIAGDEELAFKFSRGSKVL 529
BLAST of Intermediate filament b vs. Ensembl Zebrafish
Match: lmnb1 (lamin B1 [Source:ZFIN;Acc:ZDB-GENE-020424-2]) HSP 1 Score: 97.0561 bits (240), Expect = 1.537e-20 Identity = 87/309 (28.16%), Postives = 152/309 (49.19%), Query Frame = 2
Query: 188 EMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTL----EDL----------ILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRD-NKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEV-----RELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREE 1054
+ S S G SSTP + + I R +EK ELQ LNDR A YID VR+LE EN L ++ + +D +E ++T Y+ ++ R++LD +A++++++ + E L + +Q L D L A + ++ S E+ +++L+ R+ + V D + +++L+ L K+ L ETL + N QSL++++EF K +FE E+ R LV DS ++ ++AQAL D++ ++D ++ +ME Y K++ IR + + REE
Sbjct: 11 QQSLSRGTSSTPLSPARI----------SRLQEKEELQQLNDRLAAYIDTVRSLESENSVLQIQIREREDVRNRELTGLRTLYETELADARKALDDTARERARLQIELGKIKSEQEQLQHTYAKKDADLTSSQNRLKDVEALLNAKEAALNTAVSERKTLENTLSDLQIRVQEQNSDAVCDLSVCVIKLEGGLISAKKQLSDETLLRVDLENRCQSLMEELEFRKNMFEEEIKDTRRRHETRLVEVDSGRQMEY-EFKLAQALTDMRQQHDEQVKLYKEEMEQTYVSKLENIRLSSEMNSSSASMAREE 308 HSP 2 Score: 63.5438 bits (153), Expect = 4.928e-10 Identity = 61/202 (30.20%), Postives = 91/202 (45.05%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSV----IKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPE----CSESNWGFGAQIVTVLQNSKGEEKATHTQRTVYQ 1852
D KL+L++EI AYRK+LEGEE R+ S VT + S + +T+ + V + S + +A GNV+I E DGKFI L N Q++ ++G+ L R G + + +K L+ K IWA N S P ++ +WG G I L + GEE A + TV++
Sbjct: 381 DVKLALDMEINAYRKLLEGEEERLKL-----------SPSPSSRVTVSRASSSRSVRTTRGKRKRVDVEESEASSSVSIAHSASATGNVSIDELDVDGKFIRLHNNSEQDQPMAGFQLTRTI--GEVTATYKFTAKYNLKAGQK---VTIWA-SNAGISSNPPADLIWKNQPSWGTGENIKVALLSPAGEEVAVRS--TVFK 563
BLAST of Intermediate filament b vs. Ensembl Zebrafish
Match: lmnb1 (lamin B1 [Source:ZFIN;Acc:ZDB-GENE-020424-2]) HSP 1 Score: 93.2041 bits (230), Expect = 3.452e-20 Identity = 84/291 (28.87%), Postives = 146/291 (50.17%), Query Frame = 2
Query: 194 SKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTL----EDL----------ILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRD-NKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEV-----RELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIR 1006
S S G SSTP + + I R +EK ELQ LNDR A YID VR+LE EN L ++ + +D +E ++T Y+ ++ R++LD +A++++++ + E L + +Q L D L A + ++ S E+ +++L+ R+ + V D + +++L+ L K+ L ETL + N QSL++++EF K +FE E+ R LV DS + + ++AQAL D++ ++D ++ +ME Y K++ IR
Sbjct: 13 SLSRGTSSTPLSPARI----------SRLQEKEELQQLNDRLAAYIDTVRSLESENSVLQIQIREREDVRNRELTGLRTLYETELADARKALDDTARERARLQIELGKIKSEQEQLQHTYAKKDADLTSSQNRLKDVEALLNAKEAALNTAVSERKTLENTLSDLQIRVQEQNSDAVCDLSVCVIKLEGGLISAKKQLSDETLLRVDLENRCQSLMEELEFRKNMFEEEIKDTRRRHETRLVEVDSGRQME-YEFKLAQALTDMRQQHDEQVKLYKEEMEQTYVSKLENIR 292
BLAST of Intermediate filament b vs. Ensembl Zebrafish
Match: lmnb1 (lamin B1 [Source:ZFIN;Acc:ZDB-GENE-020424-2]) HSP 1 Score: 92.8189 bits (229), Expect = 3.125e-19 Identity = 85/308 (27.60%), Postives = 145/308 (47.08%), Query Frame = 2
Query: 188 EMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTL----EDL----------ILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEV-----RELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREE 1054
+ S S G SSTP + + I R +EK ELQ LNDR A YID VR+LE EN L ++ + +D +E ++T Y+ ++ R++LD +A++++++ + E L + +Q L D L A + ++ S E+ +++L+ R+ LE + K+ L ETL + N QSL++++EF K +FE E+ R LV DS ++ ++AQAL D++ ++D ++ +ME Y K++ IR + + REE
Sbjct: 11 QQSLSRGTSSTPLSPARI----------SRLQEKEELQQLNDRLAAYIDTVRSLESENSVLQIQIREREDVRNRELTGLRTLYETELADARKALDDTARERARLQIELGKIKSEQEQLQHTYAKKDADLTSSQNRLKDVEALLNAKEAALNTAVSERKTLENTLSDLQIRVQELEGGLISAKKQ--------------LSDETLLRVDLENRCQSLMEELEFRKNMFEEEIKDTRRRHETRLVEVDSGRQMEY-EFKLAQALTDMRQQHDEQVKLYKEEMEQTYVSKLENIRLSSEMNSSSASMAREE 293 HSP 2 Score: 63.929 bits (154), Expect = 4.000e-10 Identity = 61/202 (30.20%), Postives = 91/202 (45.05%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSV----IKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPE----CSESNWGFGAQIVTVLQNSKGEEKATHTQRTVYQ 1852
D KL+L++EI AYRK+LEGEE R+ S VT + S + +T+ + V + S + +A GNV+I E DGKFI L N Q++ ++G+ L R G + + +K L+ K IWA N S P ++ +WG G I L + GEE A + TV++
Sbjct: 366 DVKLALDMEINAYRKLLEGEEERLKL-----------SPSPSSRVTVSRASSSRSVRTTRGKRKRVDVEESEASSSVSIAHSASATGNVSIDELDVDGKFIRLHNNSEQDQPMAGFQLTRTI--GEVTATYKFTAKYNLKAGQK---VTIWA-SNAGISSNPPADLIWKNQPSWGTGENIKVALLSPAGEEVAVRS--TVFK 548
BLAST of Intermediate filament b vs. Ensembl Zebrafish
Match: lmnb1 (lamin B1 [Source:ZFIN;Acc:ZDB-GENE-020424-2]) HSP 1 Score: 92.8189 bits (229), Expect = 3.125e-19 Identity = 85/308 (27.60%), Postives = 145/308 (47.08%), Query Frame = 2
Query: 188 EMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTL----EDL----------ILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEV-----RELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREE 1054
+ S S G SSTP + + I R +EK ELQ LNDR A YID VR+LE EN L ++ + +D +E ++T Y+ ++ R++LD +A++++++ + E L + +Q L D L A + ++ S E+ +++L+ R+ LE + K+ L ETL + N QSL++++EF K +FE E+ R LV DS ++ ++AQAL D++ ++D ++ +ME Y K++ IR + + REE
Sbjct: 11 QQSLSRGTSSTPLSPARI----------SRLQEKEELQQLNDRLAAYIDTVRSLESENSVLQIQIREREDVRNRELTGLRTLYETELADARKALDDTARERARLQIELGKIKSEQEQLQHTYAKKDADLTSSQNRLKDVEALLNAKEAALNTAVSERKTLENTLSDLQIRVQELEGGLISAKKQ--------------LSDETLLRVDLENRCQSLMEELEFRKNMFEEEIKDTRRRHETRLVEVDSGRQMEY-EFKLAQALTDMRQQHDEQVKLYKEEMEQTYVSKLENIRLSSEMNSSSASMAREE 293 HSP 2 Score: 63.929 bits (154), Expect = 4.000e-10 Identity = 61/202 (30.20%), Postives = 91/202 (45.05%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSV----IKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPE----CSESNWGFGAQIVTVLQNSKGEEKATHTQRTVYQ 1852
D KL+L++EI AYRK+LEGEE R+ S VT + S + +T+ + V + S + +A GNV+I E DGKFI L N Q++ ++G+ L R G + + +K L+ K IWA N S P ++ +WG G I L + GEE A + TV++
Sbjct: 366 DVKLALDMEINAYRKLLEGEEERLKL-----------SPSPSSRVTVSRASSSRSVRTTRGKRKRVDVEESEASSSVSIAHSASATGNVSIDELDVDGKFIRLHNNSEQDQPMAGFQLTRTI--GEVTATYKFTAKYNLKAGQK---VTIWA-SNAGISSNPPADLIWKNQPSWGTGENIKVALLSPAGEEVAVRS--TVFK 548
BLAST of Intermediate filament b vs. Ensembl Zebrafish
Match: lmna (lamin A [Source:ZFIN;Acc:ZDB-GENE-020424-3]) HSP 1 Score: 91.6633 bits (226), Expect = 8.004e-19 Identity = 84/282 (29.79%), Postives = 150/282 (53.19%), Query Frame = 2
Query: 218 TPGATSNIVHNGVNNLMN----GREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEI----ANLRKRLG---GLEEEKVRDNK-EIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVREL-----ASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTT 1012
TPG + GV N+++ R +EK +L +LNDR A YIDKVR+LE EN L + + + + +E + +K Y+ ++ R++LD +A+++++++ + E EL AD E+ + L D E + A+L LG LE E VRD K ++ +L+ LN K+ L+ E L + A N +Q+L +++EF K I+ E+RE + +V DS +D+ +++A AL D++ +++ +L ++E Y K++ R++
Sbjct: 3 TPGQKRS-SRGGVTNVLSPTRISRLQEKEDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEISRELSGMKAAYEAELADARKTLDSVAKERARLQLELSK----VREDYKELKARNGKKEADLES---ALARLKDLESLLNSKDASLSTALGEKRTLEVE-VRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQKNIYSEELRESKRRYESRVVEIDSGRQQDY-ESKLADALTDLRNQHEEQLRIYKEEIEKTYNSKLENARSS 274 HSP 2 Score: 70.4774 bits (171), Expect = 3.417e-12 Identity = 62/215 (28.84%), Postives = 102/215 (47.44%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYR--------------VNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMS-AKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPEC-----SESNWGFGAQIVTVLQNSKGEEKATH-TQRTVYQ 1852
D KL+L++EI AYRK+LEGEE R V R S + R V + T + +++ + +SV+ G ++ + S Q +A G VT+ E +GKF+ L N Q++ + + ++R +G ++ + P K L+ + IWA G G+ P ++++WG G T L +S GEE A RT++Q
Sbjct: 361 DIKLALDMEISAYRKLLEGEEERLRLSPSPPPARGVTVTRSSGSGSHT--RVVQSSTSRTSSGSAKKRRLNDNDSDASSVVGGTVTRTRISQQASASGRVTVDEVDLEGKFVRLNNKSDQDQSLGHWQVKRQIGSGTPIV-YKFPPKFNLKA---GQTVTIWAAG--AGGTHSPPSDLVWKTQNSWGSGDLFQTTLISSSGEEMAMRKVTRTLFQ 567
BLAST of Intermediate filament b vs. Ensembl Xenopus
Match: timm13 (translocase of inner mitochondrial membrane 13 homolog [Source:NCBI gene;Acc:734099]) HSP 1 Score: 115.931 bits (289), Expect = 1.334e-26 Identity = 146/554 (26.35%), Postives = 270/554 (48.74%), Query Frame = 2
Query: 212 SSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELN-------LLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELAS-----LVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQ-VTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHT 1834
+STP + + I R +EK EL+ LNDR A YID+VR+LE EN RL ++ + ++ +E + IK Y++++ R+ LD+ +A++++++ +++L++ T+ + + + D E LG EK E+ L+ +L+ + K+ LEKETL + N +QSL ++++F K I+E E RE +V D D+ +++AQAL +++ ++D ++ ++E Y K+ I+ + + REE T + ++ + +L L+ + N E + L + + ++ ++ KE+ + +++ L E Q LLD KL+L++EI AYRK+LEGEE R+ L+ + +S T+ T +S S + S + + VTS S Q +A G+++I+E +GK++ L+N +++ + + L+R ++ P K +L+ + Y A S ++S WG G+ I T L N++ EE A T
Sbjct: 8 TSTPLSPTRI----------SRLQEKEELRHLNDRLAVYIDRVRSLELENDRLMVKISEKEEVTTREVSGIKNLYESELADARKVLDETARERARLQIELGKF-------RSDLDELTKNYKKKDADLSTAQGRIRDLEALFHRSEAELGTALGEKRSLEAEVADLRAQLSKAEDAHAVAKKQLEKETLMRVDFENRIQSLQEEMDFRKNIYEEESRETRKRHERRIVEVDRGHQCDY-DSKLAQALDELRKQHDEQVKMYKEELEQTYQAKLDNIKRSSDHNDKAANTAREELTEARMRIETLSYQLSGLQKQANAAEDRIRELEQLLSSDRDKYRKLLDSKEKEMAEMRDQMQQQLTEYQELLDVKLALDMEINAYRKLLEGEEERL------KLSPSPQSRVTVSRATSSSSSATRTSRSKRNRTVTSGQGSSTRFHLSQQASATGSISIEEIDLEGKYVHLKNNSDKDQSLGNWRLKRKIGEEEEIVYKFTP-KYVLKAGQSVKIYSADAGVAHSPPSILVWKNQSTWGTGSNIRTYLVNTEEEEVAVRT 536
BLAST of Intermediate filament b vs. Ensembl Xenopus
Match: timm13 (translocase of inner mitochondrial membrane 13 homolog [Source:NCBI gene;Acc:734099]) HSP 1 Score: 114.005 bits (284), Expect = 5.966e-26 Identity = 144/553 (26.04%), Postives = 269/553 (48.64%), Query Frame = 2
Query: 212 SSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELN-------LLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELAS-----LVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHT 1834
+STP + + I R +EK EL+ LNDR A YID+VR+LE EN RL ++ + ++ +E + IK Y++++ R+ LD+ +A++++++ +++L++ T+ + + + D E LG EK E+ L+ +L+ + K+ LEKETL + N +QSL ++++F K I+E E RE +V D D+ +++AQAL +++ ++D ++ ++E Y K+ I+ + + REE T + ++ + +L L+ + N E + L + + ++ ++ KE+ + +++ L E Q LLD KL+L++EI AYRK+LEGEE R+ L+ + +S T+ T +S S +K + T + +S + S A G+++I+E +GK++ L+N +++ + + L+R ++ P K +L+ + Y A S ++S WG G+ I T L N++ EE A T
Sbjct: 21 TSTPLSPTRI----------SRLQEKEELRHLNDRLAVYIDRVRSLELENDRLMVKISEKEEVTTREVSGIKNLYESELADARKVLDETARERARLQIELGKF-------RSDLDELTKNYKKKDADLSTAQGRIRDLEALFHRSEAELGTALGEKRSLEAEVADLRAQLSKAEDAHAVAKKQLEKETLMRVDFENRIQSLQEEMDFRKNIYEEESRETRKRHERRIVEVDRGHQCDY-DSKLAQALDELRKQHDEQVKMYKEELEQTYQAKLDNIKRSSDHNDKAANTAREELTEARMRIETLSYQLSGLQKQANAAEDRIRELEQLLSSDRDKYRKLLDSKEKEMAEMRDQMQQQLTEYQELLDVKLALDMEINAYRKLLEGEEERL------KLSPSPQSRVTVSRAT-SSSSSATRTSRSKRKRTGFTRFHLSQQAS----ATGSISIEEIDLEGKYVHLKNNSDKDQSLGNWRLKRKIGEEEEIVYKFTP-KYVLKAGQSVKIYSADAGVAHSPPSILVWKNQSTWGTGSNIRTYLVNTEEEEVAVRT 543
BLAST of Intermediate filament b vs. Ensembl Xenopus
Match: timm13 (translocase of inner mitochondrial membrane 13 homolog [Source:NCBI gene;Acc:734099]) HSP 1 Score: 114.005 bits (284), Expect = 8.040e-26 Identity = 152/584 (26.03%), Postives = 279/584 (47.77%), Query Frame = 2
Query: 164 GGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELN-------LLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELAS-----LVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVT-----------SVIKGEMSAKTSF----QRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHT 1834
G S T M +STP + + I R +EK EL+ LNDR A YID+VR+LE EN RL ++ + ++ +E + IK Y++++ R+ LD+ +A++++++ +++L++ T+ + + + D E LG EK E+ L+ +L+ + K+ LEKETL + N +QSL ++++F K I+E E RE +V D D+ +++AQAL +++ ++D ++ ++E Y K+ I+ + + REE T + ++ + +L L+ + N E + L + + ++ ++ KE+ + +++ L E Q LLD KL+L++EI AYRK+LEGEE R+ L+ + +S T+ T +S S + S + +V +V G+ S+ T F Q +A G+++I+E +GK++ L+N +++ + + L+R ++ P K +L+ + Y A S ++S WG G+ I T L N++ EE A T
Sbjct: 3 GRSRSGTSSMQSPARGTSTPLSPTRI----------SRLQEKEELRHLNDRLAVYIDRVRSLELENDRLMVKISEKEEVTTREVSGIKNLYESELADARKVLDETARERARLQIELGKF-------RSDLDELTKNYKKKDADLSTAQGRIRDLEALFHRSEAELGTALGEKRSLEAEVADLRAQLSKAEDAHAVAKKQLEKETLMRVDFENRIQSLQEEMDFRKNIYEEESRETRKRHERRIVEVDRGHQCDY-DSKLAQALDELRKQHDEQVKMYKEELEQTYQAKLDNIKRSSDHNDKAANTAREELTEARMRIETLSYQLSGLQKQANAAEDRIRELEQLLSSDRDKYRKLLDSKEKEMAEMRDQMQQQLTEYQELLDVKLALDMEINAYRKLLEGEEERL------KLSPSPQSRVTVSRATSSSSSATRTSRSKRKRVEEEYEEGGGSSRTVTSGQGSS-TRFHLSQQASATGSISIEEIDLEGKYVHLKNNSDKDQSLGNWRLKRKIGEEEEIVYKFTP-KYVLKAGQSVKIYSADAGVAHSPPSILVWKNQSTWGTGSNIRTYLVNTEEEEVAVRT 560
BLAST of Intermediate filament b vs. Ensembl Xenopus
Match: timm13 (translocase of inner mitochondrial membrane 13 homolog [Source:NCBI gene;Acc:734099]) HSP 1 Score: 112.464 bits (280), Expect = 2.441e-25 Identity = 145/581 (24.96%), Postives = 268/581 (46.13%), Query Frame = 2
Query: 212 SSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELN-------LLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELAS-----LVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRV----------------------------NRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHT 1834
+STP + + I R +EK EL+ LNDR A YID+VR+LE EN RL ++ + ++ +E + IK Y++++ R+ LD+ +A++++++ +++L++ T+ + + + D E LG EK E+ L+ +L+ + K+ LEKETL + N +QSL ++++F K I+E E RE +V D D+ +++AQAL +++ ++D ++ ++E Y K+ I+ + + REE T + ++ + +L L+ + N E + L + + ++ ++ KE+ + +++ L E Q LLD KL+L++EI AYRK+LEGEE R+ RK + + G + + T +S A+ + VTS S Q +A G+++I+E +GK++ L+N +++ + + L+R ++ P K +L+ + Y A S ++S WG G+ I T L N++ EE A T
Sbjct: 21 TSTPLSPTRI----------SRLQEKEELRHLNDRLAVYIDRVRSLELENDRLMVKISEKEEVTTREVSGIKNLYESELADARKVLDETARERARLQIELGKF-------RSDLDELTKNYKKKDADLSTAQGRIRDLEALFHRSEAELGTALGEKRSLEAEVADLRAQLSKAEDAHAVAKKQLEKETLMRVDFENRIQSLQEEMDFRKNIYEEESRETRKRHERRIVEVDRGHQCDY-DSKLAQALDELRKQHDEQVKMYKEELEQTYQAKLDNIKRSSDHNDKAANTAREELTEARMRIETLSYQLSGLQKQANAAEDRIRELEQLLSSDRDKYRKLLDSKEKEMAEMRDQMQQQLTEYQELLDVKLALDMEINAYRKLLEGEEERLKLSPSPQSRVTVSRATSSSSSATRTSRSKRKRVEEEYEEGGAGTGLHTGTSLGLSHITASEGSSRTVTSGQGSSTRFHLSQQASATGSISIEEIDLEGKYVHLKNNSDKDQSLGNWRLKRKIGEEEEIVYKFTP-KYVLKAGQSVKIYSADAGVAHSPPSILVWKNQSTWGTGSNIRTYLVNTEEEEVAVRT 582
BLAST of Intermediate filament b vs. Ensembl Xenopus
Match: timm13 (translocase of inner mitochondrial membrane 13 homolog [Source:NCBI gene;Acc:734099]) HSP 1 Score: 112.079 bits (279), Expect = 2.985e-25 Identity = 142/553 (25.68%), Postives = 266/553 (48.10%), Query Frame = 2
Query: 212 SSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELN-------LLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELAS-----LVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHT 1834
+STP + + I R +EK EL+ LNDR A YID+VR+LE EN RL ++ + ++ +E + IK Y++++ R+ LD+ +A++++++ +++L++ T+ + + + D E LG EK E+ L+ +L+ + K+ LEKETL + N +QSL ++++F K I+E E RE +V D D+ +++AQAL +++ ++D ++ ++E Y K+ I+ + + REE T + ++ + +L L+ + N E + L + + ++ ++ KE+ + +++ L E Q LLD KL+L++EI AYRK+LEGEE R+ L+ + +S T+ T +S S + S + +T+ A G+++I+E +GK++ L+N +++ + + L+R ++ P K +L+ + Y A S ++S WG G+ I T L N++ EE A T
Sbjct: 21 TSTPLSPTRI----------SRLQEKEELRHLNDRLAVYIDRVRSLELENDRLMVKISEKEEVTTREVSGIKNLYESELADARKVLDETARERARLQIELGKF-------RSDLDELTKNYKKKDADLSTAQGRIRDLEALFHRSEAELGTALGEKRSLEAEVADLRAQLSKAEDAHAVAKKQLEKETLMRVDFENRIQSLQEEMDFRKNIYEEESRETRKRHERRIVEVDRGHQCDY-DSKLAQALDELRKQHDEQVKMYKEELEQTYQAKLDNIKRSSDHNDKAANTAREELTEARMRIETLSYQLSGLQKQANAAEDRIRELEQLLSSDRDKYRKLLDSKEKEMAEMRDQMQQQLTEYQELLDVKLALDMEINAYRKLLEGEEERL------KLSPSPQSRVTVSRATSSSSSATRTSRSKRNHITAS-------------EATGSISIEEIDLEGKYVHLKNNSDKDQSLGNWRLKRKIGEEEEIVYKFTP-KYVLKAGQSVKIYSADAGVAHSPPSILVWKNQSTWGTGSNIRTYLVNTEEEEVAVRT 535
BLAST of Intermediate filament b vs. Ensembl Mouse
Match: Lmnb2 (lamin B2 [Source:MGI Symbol;Acc:MGI:96796]) HSP 1 Score: 132.88 bits (333), Expect = 4.311e-32 Identity = 159/590 (26.95%), Postives = 274/590 (46.44%), Query Frame = 2
Query: 215 STPGATSNIV----HNGVNNLMN----GREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEA-------QTELNDATQLHLADKETI-----DKMASTLSD---YEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIF-----ESEVRELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVT---------------------RTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPEC---SESNWGFGAQIVTVLQNSKGEEKAT 1828
S ATS + H G ++ R +EK EL++LNDR A+YID+VR LE EN RL + + ++ +E + IKT Y++++ RR LD+ +A+++++I ++ + EA + EL A Q + D E++ ++A+ LSD E E+A LR +L K D + K+ LEKETL + N QSL +++ F K +F E+ R LV DS+ +++ +MAQAL D+++++D ++ ++E Y K+ + Q + REE + ++ + +L L+ + + E + L + + +F + +E+ + ++ L E Q LLD KL+L++EI AYRK+LEGEE R+ L+ + S T+ T R +PS ++V+S ++ + Q A G V I E P+G+F+ L+N+ +++ + + ++R G + P K +L + +WA G S S++NWG G T L ++ GEE A
Sbjct: 12 SPAAATSAMASLPPHAGPATPLSPTRLSRLQEKEELRELNDRLAHYIDRVRALELENDRLLLRISEKEEVTTREVSGIKTLYESELADARRVLDETARERARLQIEIGKVQAELEEARKSAKKREGELTVA-QGRVKDLESLFHRSEAELATALSDKQGLETEVAELRAQLA-----KAEDGHAVA---------KKQLEKETLMRVDLENRCQSLQEELAFSKSVFEEEVRETRRRHERRLVEVDSSRQQEY-DFKMAQALEDLRSQHDEQVRLYRVELEQTYQAKLDNAKLLSDQNDKAAHAAREELKEARMRVESLSYQLLGLQKQASAAENHIHELEEALAGERDKFRKMLDAKEQEMTEVRDAMQQQLAEYQELLDIKLALDMEISAYRKLLEGEEERL------KLSPSPSSRITISRATSSSSSSSGVGMSVGQGRGKRRRLETEDTSGSPSRASRVSS------GSRLAQQTVATGVVNIDEVDPEGRFVRLKNSSDKDQSLGNWRIKRQVLEGEDIAYKFTP-KYVLRA---GQTVTVWAAGAGATHSPPSTLVWKSQTNWGPGESFRTALVSADGEEVAV 569
BLAST of Intermediate filament b vs. Ensembl Mouse
Match: Lmnb2 (lamin B2 [Source:MGI Symbol;Acc:MGI:96796]) HSP 1 Score: 131.724 bits (330), Expect = 8.799e-32 Identity = 153/562 (27.22%), Postives = 265/562 (47.15%), Query Frame = 2
Query: 275 REKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQT-------ELNDATQLHLADKETI-----DKMASTLSD---YEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIF-----ESEVRELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVT---------------------RTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPEC---SESNWGFGAQIVTVLQNSKGEEKAT 1828
R +EK EL++LNDR A+YID+VR LE EN RL + + ++ +E + IKT Y++++ RR LD+ +A+++++I ++ + EA+ EL A Q + D E++ ++A+ LSD E E+A LR +L K D + K+ LEKETL + N QSL +++ F K +F E+ R LV DS+ +++ +MAQAL D+++++D ++ ++E Y K+ + Q + REE + ++ + +L L+ + + E + L + + +F + +E+ + ++ L E Q LLD KL+L++EI AYRK+LEGEE R+ L+ + S T+ T R +PS ++V+S ++ + Q A G V I E P+G+F+ L+N+ +++ + + ++R G + P K +L + +WA G S S++NWG G T L ++ GEE A
Sbjct: 21 RLQEKEELRELNDRLAHYIDRVRALELENDRLLLRISEKEEVTTREVSGIKTLYESELADARRVLDETARERARLQIEIGKVQAELEEARKSAKKREGELTVA-QGRVKDLESLFHRSEAELATALSDKQGLETEVAELRAQLA-----KAEDGHAVA---------KKQLEKETLMRVDLENRCQSLQEELAFSKSVFEEEVRETRRRHERRLVEVDSSRQQEY-DFKMAQALEDLRSQHDEQVRLYRVELEQTYQAKLDNAKLLSDQNDKAAHAAREELKEARMRVESLSYQLLGLQKQASAAENHIHELEEALAGERDKFRKMLDAKEQEMTEVRDAMQQQLAEYQELLDIKLALDMEISAYRKLLEGEEERL------KLSPSPSSRITISRATSSSSSSSGVGMSVGQGRGKRRRLETEDTSGSPSRASRVSS------GSRLAQQTVATGVVNIDEVDPEGRFVRLKNSSDKDQSLGNWRIKRQVLEGEDIAYKFTP-KYVLRA---GQTVTVWAAGAGATHSPPSTLVWKSQTNWGPGESFRTALVSADGEEVAV 550
BLAST of Intermediate filament b vs. Ensembl Mouse
Match: Vim (vimentin [Source:MGI Symbol;Acc:MGI:98932]) HSP 1 Score: 90.5077 bits (223), Expect = 8.694e-19 Identity = 112/386 (29.02%), Postives = 190/386 (49.22%), Query Frame = 2
Query: 212 SSTPG------ATSNIVHNGVNN-LMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTE-NKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVN 1345
SS PG + + + +N N R EK ELQ+LNDRFANYIDKVR LE +NK L EL LK G+ +R+ Y+ +M +LRR +DQ KA++E++ + L + I+ L + Q + +E + STL + ++ DN + RL DLE+ +++SL ++I FLKK+ + E++EL + + + + + D + ++ ALRD++ +Y+ + E Y K ++ ++ N Q ++E+ + Q+ + + L+ N LER + + + + L+ E+ N K E+ L E Q LL+ K++L++EI YRK+LEGEE R++
Sbjct: 72 SSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLK---GQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIM----RLREKLQEEMLQREEAE---STLQSFRQDV----------------DNASLARL---------DLER----------KVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFALEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIS 412
BLAST of Intermediate filament b vs. Ensembl Mouse
Match: Vim (vimentin [Source:MGI Symbol;Acc:MGI:98932]) HSP 1 Score: 90.8929 bits (224), Expect = 8.760e-19 Identity = 114/386 (29.53%), Postives = 191/386 (49.48%), Query Frame = 2
Query: 212 SSTPG------ATSNIVHNGVNN-LMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTE-NKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVN 1345
SS PG + + + +N N R EK ELQ+LNDRFANYIDKVR LE +NK L EL LK Q GK +R+ Y+ +M +LRR +DQ KA++E++ + L + I+ L + Q + +E + STL + ++ DN + RL DLE+ +++SL ++I FLKK+ + E++EL + + + + + D + ++ ALRD++ +Y+ + E Y K ++ ++ N Q ++E+ + Q+ + + L+ N LER + + + + L+ E+ N K E+ L E Q LL+ K++L++EI YRK+LEGEE R++
Sbjct: 72 SSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQ-GK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIM----RLREKLQEEMLQREEAE---STLQSFRQDV----------------DNASLARL---------DLER----------KVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFALEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIS 412
BLAST of Intermediate filament b vs. Ensembl Mouse
Match: Lmnb1 (lamin B1 [Source:MGI Symbol;Acc:MGI:96795]) HSP 1 Score: 87.4261 bits (215), Expect = 1.513e-17 Identity = 85/273 (31.14%), Postives = 144/273 (52.75%), Query Frame = 2
Query: 272 GREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQA--EGAKAQMEM-KINTLEDLIL----EAQTELNDATQLHLADKETI-----DKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVREL-----ASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETV 1039
R +EK EL++LNDR A YIDKVR+LE EN L ++ + ++ G+E +K Y+ ++ RR+LD E AK Q+E+ K D +L + +++L+ A Q+ L + E +A+ L D +K L G + E ++D +I +L+ L+ K+ L ETL + N QSL + +EF K ++E E+ E LV DS ++ ++AQAL +++ ++D ++ ++E Y K++ R + S+ N TV
Sbjct: 29 SRLQEKEELRELNDRLAVYIDKVRSLETENSALQLQVTEREEVRGRELTGLKALYETELADARRALDDTARERAKLQIELGKFKAEHDQLLLNYAKKESDLSGA-QIKLREYEAALNSKDAALATALGD--------KKSLEG-DLEDLKD--QIAQLEASLSAAKKQLADETLLKVDLENRCQSLTEDLEFRKNMYEEEINETRRKHETRLVEVDSGRQIEY-EYKLAQALHEMREQHDAQVRLYKEELEQTYHAKLENARLS-SEMNTSTV 287 HSP 2 Score: 66.2402 bits (160), Expect = 8.397e-11 Identity = 59/201 (29.35%), Postives = 98/201 (48.76%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSV----IKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPEC---SESNWGFGAQIVTVLQNSKGEEKATHTQRTVYQ 1852
D KL+L++EI AYRK+LEGEE R+ S VT + S + +T+ + V + S S +A GNV I+E DGKFI L+NT Q++ + G+ + R + + K+ S+ +L+ + +WA S + ++++WG G + +L+NS+GEE A + TV++
Sbjct: 366 DVKLALDMEISAYRKLLEGEEERLKL-----------SPSPSSRVTVSRASSSRSVRTTRGKRKRVDVEESEASSSVSISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYT--SRYVLKA---GQTVTVWAANAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVAQRS--TVFK 548
BLAST of Intermediate filament b vs. UniProt/SwissProt
Match: sp|Q01241|NF70_DORPE (70 kDa neurofilament protein OS=Doryteuthis pealeii OX=1051067 PE=2 SV=1) HSP 1 Score: 352.058 bits (902), Expect = 8.545e-112 Identity = 245/597 (41.04%), Postives = 384/597 (64.32%), Query Frame = 2
Query: 83 PPIQP-ISGYRNVVITRTGPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDST-ENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAA--PSTKTQVT-SVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESN--WGFGAQIVTVLQNSKGEEKATHTQRTVYQ 1852
I P SGY N + P S++G+ + R+ + S YG ++ PG +NI GVN++ RE+EK +++DLN+RFANYI+KVR LE +NK+L+ EL +LK +WGKET+ IK Y+ ++ + R+ +D K +++++ L D + Q +L ++ H D+E I + L+D E EI+ LR+ + LE+EK+R + + ++ +E+ ++ DL ET+ H+ A N Q+L +++EF K + E++ELA+L Y+D+T EN++FWRNE+AQA+RDIQ EYD K D + D+EA Y LK+QE RT +++N+E + +EENT+LK + E+RNRL +LEARN +LER + L R++EEK+R+ +LE ++E+ + E+E IL ELQ L+D KLSLELEI AYRK+LEGEE RV K Q + Q + V T +++ + +Q++ +++GE++AKT++QRT+KG+V+I+E G FI LE +EE+++G+ + R D+ + V + IP+ ++ TG KIW++ ++ Q GD S N WG G+ +VT+LQN KGE+KA +TQ TVYQ
Sbjct: 33 AKIHPRTSGYINR--SSQSPFRSSMGS-NAAYTRSYDFS--YGATAMPGRYANISSTGVNHVKANREREKQDMRDLNERFANYIEKVRFLEAQNKKLAGELEELKSKWGKETSAIKEMYETELEEARKLIDATNKEKITLDVRVTELIDQLERQQKDLEESRTYHQIDQEQIARQNQQLADLEGEISMLRRSIESLEKEKMRQSNILAKMNDEMEKMRMDLNNETINHLDAENRRQTLEEELEFQKDVHAQELKELAALAYRDTTAENREFWRNELAQAIRDIQQEYDAKCDQMRGDIEAYYNLKVQEFRTGATKQNMEVTRNKEENTKLKSNMTEIRNRLADLEARNAQLERTNQDLLRDLEEKDRQNELESCQYKEEITKLRGEMESILKELQDLMDIKLSLELEIAAYRKLLEGEESRVGMK--QIVEQVVGARPNEAEVLSTILTRSEGGYEATGDSQISMKMMRGELAAKTTYQRTSKGSVSIKEADSQGCFIALET--KKEENLTGWKIVRKVDDNK-VYTYEIPN--LVLKTGT--VVKIWSKNHQAQARGDDLVSRENDTWGTGSNVVTILQNEKGEDKANYTQNTVYQ 615
BLAST of Intermediate filament b vs. UniProt/SwissProt
Match: sp|P23731|IFEB_ASCSU (Intermediate filament protein B OS=Ascaris suum OX=6253 PE=1 SV=1) HSP 1 Score: 303.523 bits (776), Expect = 1.542e-93 Identity = 214/594 (36.03%), Postives = 346/594 (58.25%), Query Frame = 2
Query: 89 IQPISGYRNVVITRTGPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRT-SISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTG-SQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGS--GDPEC----SESNWGFGAQIVTVLQNSKGEEKATHTQRTV 1846
IQP + R +R ST GG R ++M G +S G + + N + + +KEK E+Q LNDR NYID+V+ LE++N++L +L +L+ +WGK+T+ IK Y + + R+ +D KA++++K+ L D + E + D +D+E I++ + D + E+ LR R L EE+ R N + R+ EEL + DL++ETL I N++Q+L++++EFL+++ E EV+EL +L+ + + ++F++NE+A A+RDI+ EYD DME+ Y LK+ E++ + ++ N+E+ REE R++D + ++R +L +LEA+N LE+ ++ L ++ + R+++ N+ L + E + ++ ELQ LLD K L+ EI YRKMLEGEE RV + ++ V +T S+ QQ ST+ ++GE+S KT+FQR+AKGNVTI EC P+GKFI LENT S++E++ + L+R DN R ++ + IP T+L+ R KI+A R QG P+ E+ WG GA +VT L N G+E+ATHTQ+T+
Sbjct: 19 IQPRTAVR--TQSRQSGAYSTGAVSGGGG-RVLKMVTEMGSASIGGISPALSANAAKSFLEATDKEKKEMQGLNDRLGNYIDRVKKLEEQNRKLVADLDELRGRWGKDTSEIKIQYSDSLRDARKEIDDGARRKAEIDVKVARLRDDLAELRNRYEDVQHRRESDREKINQWQHAIEDAQSELEMLRARWRQLTEEEKRLNGDNARIWEELQKARNDLDEETLGRIDFQNQVQTLMEELEFLRRVHEQEVKELQALLAQAPADTREFFKNELALAIRDIKDEYDYIAKQGKQDMESWYKLKVSEVQGSANRANMESSYQREEVKRMRDNIGDLRGKLGDLEAKNALLEKEVQNLNYQLNDDQRQYEAALNDRDATLRRMREECQTLVAELQALLDTKQMLDAEIAIYRKMLEGEESRVGLRQ------------MVEQVVKTHSLQQQEDTDSTRN-----VRGEVSTKTTFQRSAKGNVTISECDPNGKFITLENTHRSKDENLGEHRLKRKLDNRREIV-YTIPPNTVLKA---GRTMKIYA---RDQGGIHNPPDTLVFDGENTWGIGANVVTSLINKDGDERATHTQKTI 585
BLAST of Intermediate filament b vs. UniProt/SwissProt
Match: sp|P90901|IFA1_CAEEL (Intermediate filament protein ifa-1 OS=Caenorhabditis elegans OX=6239 GN=ifa-1 PE=1 SV=2) HSP 1 Score: 291.197 bits (744), Expect = 5.716e-89 Identity = 210/577 (36.40%), Postives = 351/577 (60.83%), Query Frame = 2
Query: 134 GPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDST-ENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRT-SISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTG-SQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPE-----CSESNWGFGAQIVTVLQNSKGEEKATHTQR 1840
G T V +Q EM G +P N + + + RE+EK E+ DLNDR A+YI+KVR LE +N++L+ +L L+ +WGK+T I+ Y+ +++ ++ +D+ + ME ++ ++D + E + +L DAT+ D+ ID + TLS+ E EI+ L++R+ LE+E R +E RL EL + DL++ETL I N++Q+L+++I+FL+++ ++E++EL +L +D+T EN++F++NE++ A+RDI+ EYD+ + DME+ Y LK+QEI+T +++N+E +EE RL+ QL+++R +L +LE+RN+ LE+ ++ L ++E+ R ++ N+ ++ + E + +++ELQ+LLD K +L+ EI YRKMLEGEE R K ++ V +T +I+Q+ T T+ V+KGE +++ SFQR+AKGNV+I E SPDGKFI+L+NT +++E I + L+R D R + + +P +L GK KI+AR QG P +E ++G G + T+L N +GEE+ATH QR
Sbjct: 24 GRTTGNVTSQDRMLKIVTEMRSGAGSGLSPFG-----QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQ------------LVEQVVKTHAITQE-----TDTETMRVVKGETASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRA-GKT--LKIFARN---QGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQR 571
BLAST of Intermediate filament b vs. UniProt/SwissProt
Match: sp|Q19289|IFB1_CAEEL (Intermediate filament protein ifb-1 OS=Caenorhabditis elegans OX=6239 GN=ifb-1 PE=1 SV=1) HSP 1 Score: 289.656 bits (740), Expect = 3.812e-88 Identity = 207/597 (34.67%), Postives = 346/597 (57.96%), Query Frame = 2
Query: 107 YRNVVITRTGPTVSTVGTQGGSNI----------RTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTG-SQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQG--SGDPEC----SESNWGFGAQIVTVLQNSKGEEKATHTQRTV 1846
YR+ + RT V + Q G+ + R ++M G ++ G + + N + + +KEK LQ LNDR NYID+V+ LE++N++L +L +L+ +WGK+T+ IK Y + R+ +D A KA++++K+ D + E ++ D Q +D+E I + + ++D + E+ LR R L +E+ R + R+ EEL + DL+ ET+ I N++Q+L++++EFL+++ E EV+EL +L+ + + ++F++NE+A A+RDI+ EYD DME+ Y LK+ E++ + ++ N+E+ R+E R++D + ++R +L +LE +N+ LE+ ++ L ++ + R+++ N+ L + E + ++ ELQ LLD K L+ EI YRKMLEGEE RV G + V S+ QQ ST++ ++GE+S KT+FQR+AKGNVTI EC P+GKFI LEN+ +++E++ + ++R D GR I + IP+ +++P GKN I+A R QG + PE E+ WG GA +VT L N GEE+ATHTQ+T+
Sbjct: 14 YRSTIQPRTA--VRSQSRQSGNYVSGGNGAGSGGRVLKMVTEMGSATVGGISPALSANAAKSFLEATDKEKKTLQGLNDRLGNYIDRVKKLEEQNRKLVADLDELRGKWGKDTSEIKIKYSESLSTARKDIDDAARRKAEVDVKVARHRDDLAEYRSRYEDIQQRRESDREKISQWTNAIADAQSEVEMLRARFKQLTDEEKRVTADNSRIWEELQKARSDLDDETIGRIDFQNQVQTLMEELEFLRRVHEQEVKELQALLAQAPADTREFFKNELALAIRDIKDEYDIIAKQGKQDMESWYKLKVSEVQGSANRANMESTYQRDEVKRMRDNIGDLRGKLGDLENKNSLLEKEVQNLNYQLTDDQRQYEAALNDRDATLRRMREECQTLVAELQALLDTKQMLDAEIAIYRKMLEGEETRV-----------GLTQMVEQAVKTHSLQQQENTDSTRS-----VRGEVSTKTTFQRSAKGNVTISECDPNGKFIKLENSHRNKDENVGEHKIRRKLD-GRREIVYSIPANVVIKP-GKN--LTIYA---RDQGGINNPPESLVFDGENTWGIGANVVTSLVNKDGEERATHTQKTI 585
BLAST of Intermediate filament b vs. UniProt/SwissProt
Match: sp|O02365|IFA2_CAEEL (Intermediate filament protein ifa-2 OS=Caenorhabditis elegans OX=6239 GN=mua-6 PE=1 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 4.887e-80 Identity = 200/545 (36.70%), Postives = 331/545 (60.73%), Query Frame = 2
Query: 245 HNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDST-ENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTM-DHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTG-SQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDP------ECSESNWGFGAQIVTVLQNSKGEEKATHTQRTVYQ 1852
N + + + RE+EK E+ +LNDR A+YI+KVR L+ +N++L +L L+ ++GK T +K Y+ ++ + Q + E +I L+D + E + + +A + D+ ID + TLS+ E EI L++R+ LEEE R KE RL EL ++ +L++ETL I N++++++++I+F+K+ FE+E++EL + +D+T EN+++++NE+A A+RDI+ EYD+ ++ DME+ Y L++QEI T +++N E +EE RL++Q +E+R +L +LE+RN LE+ +E L ++E+ R ++ N+ ++ + E + +++ELQ+LLD K +L+ E+ YR+MLEG N G + + + V RTS + A T+ V+KGE S++TS+QR+AKGNV I+E SP+GKF+ILENT ++EE + + L+R D R ++ PS IL P + KI+ARG QG +P E E+ +G GA + T+L N+KGEE+ATH QR Q
Sbjct: 58 QNAASTIRDNREREKKEIMELNDRLASYIEKVRFLDAQNRKLDADLKMLQGRFGKSTGSVKVMYEMEITTATNVVKQTGKDHGETEKEIRKLQDQLDELRKKFEEAQRGRAEDRLKIDDLLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVRIELDQETLLRIDNQNKVKTILEEIDFMKRGFETELKELQAQAARDTTSENREYFKNELANAMRDIRAEYDQIMNGNRNDMESWYQLRVQEINTQSNRQNAENNYQKEEVKRLRNQTSELRQKLSDLESRNLLLEKQIEDLNYQLEDDQRSYEAALNDKDAQIRKLREECQALMVELQMLLDTKQTLDGELKVYRQMLEG-------------NSEGNGLRQLVEKVVRTSAINEEA----DTETMRVVKGEHSSRTSYQRSAKGNVAIKETSPEGKFVILENTHRAKEEPLGDWKLKRKIDGKREIV-FTFPSDYILHPF---QSVKIFARG---QGIANPPEVLIFEGDET-FGVGANVQTILYNNKGEERATHIQRQSQQ 577
BLAST of Intermediate filament b vs. TrEMBL
Match: Q95P01 (Intermediate filament b OS=Dugesia japonica OX=6161 GN=DjIFb PE=2 SV=1) HSP 1 Score: 933.324 bits (2411), Expect = 0.000e+0 Identity = 502/589 (85.23%), Postives = 551/589 (93.55%), Query Frame = 2
Query: 89 IQPISGYRNVVITRTGPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHTQRTVYQL 1855
IQPISGYRNVVITRTGP +ST G Q S+IRTIEM KSYG+S+TPGATSNIVH+GVNNLMNGREKEKNELQ+LNDRFANYIDKVR+LEDENKRL+DEL DLKDQWGKETARIK YD+DM QLRRSLDQAE +KAQ+EMKINTLEDLI EA ELNDATQLH ADKETIDKM STLSDYEHEI NLRKRL LEEEK+RDNKEI+RLKE++N LK+DL+KETLEHITAHNE+QSL+DQIEFLKKIFESE+RELA+LVYKDS+E KDFWRNEMAQALRDIQ+EYD+K++ LH+DMEAQYTLKIQE+RT QS+ENVETVQLREENTRLKDQLA+MRNRLPELEARNNELERLLELLRREIEEKNR+FD+EK NLRKEL+NR++ELE ILIELQILLDAKLSLELEIIAYRKMLEGEEYRVNRKSN NQTGR++D+MDH+TR++ISQQ A PSTKTQVTS++KGEMSAKTSFQRTAKGNVTIQECS DGKFIILENTGSQ+EDISGYIL RNTDNGRI++KHVI K+ILEPTGKNRYYKIWARGN+PQGS D ECSESNWG+GA IVT LQNSKGEEKATHTQRTVYQL
Sbjct: 22 IQPISGYRNVVITRTGPAISTAGNQNASSIRTIEMKKSYGVSATPGATSNIVHSGVNNLMNGREKEKNELQELNDRFANYIDKVRSLEDENKRLTDELNDLKDQWGKETARIKALYDSDMSQLRRSLDQAEASKAQLEMKINTLEDLIQEAHVELNDATQLHTADKETIDKMTSTLSDYEHEIGNLRKRLSSLEEEKIRDNKEIIRLKEDINQLKKDLDKETLEHITAHNEVQSLLDQIEFLKKIFESEIRELAALVYKDSSETKDFWRNEMAQALRDIQSEYDKKMEALHFDMEAQYTLKIQEVRTNQSKENVETVQLREENTRLKDQLADMRNRLPELEARNNELERLLELLRREIEEKNRDFDMEKANLRKELMNRQSELESILIELQILLDAKLSLELEIIAYRKMLEGEEYRVNRKSNSTFNQTGRNIDSMDHITRSTISQQQAVPSTKTQVTSIVKGEMSAKTSFQRTAKGNVTIQECSADGKFIILENTGSQDEDISGYILSRNTDNGRIIVKHVISPKSILEPTGKNRYYKIWARGNKPQGSNDAECSESNWGYGAHIVTTLQNSKGEEKATHTQRTVYQL 610
BLAST of Intermediate filament b vs. TrEMBL
Match: T1E1E3 (LaminB OS=Dendrocoelum lacteum OX=27895 PE=2 SV=1) HSP 1 Score: 705.671 bits (1820), Expect = 0.000e+0 Identity = 401/599 (66.94%), Postives = 497/599 (82.97%), Query Frame = 2
Query: 89 IQPISGYRNVVITRTGPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHV-TRTSISQQHAA-------PSTKTQVT--SVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHTQRTVYQL 1855
+QPISG RNVVI RT PTV T G Q +++R IEM KSYG S TPGA+SNIV GVN+LMNGREKE+ EL +LNDRFANYIDKV++LEDEN+RL++EL++LK+QWGKET RIK +D+DM +LR+SLD AE AK Q+EMKIN+ ED I E++ ELN+ QLH ADKETIDKM + L+DYE+E +LR+RL GLE+EK++D+KEI RLK+E+ LK+DL+KETL+HI A NE+QSL D+IEFLKKI+ESEVREL +L YKD TE+KDFWRNEM+QALRDIQ+EYDR++D++ +DMEAQY LKIQE R TQ++++ ET+ LREENT+LK+QL+++RNRLPELEARNNELER+LELLRREI+E+NR +DLE+ NLRKEL NR+A+LE I+ ELQILLDAKLSLELEI+AYRKMLEGEE+RVN+K+ + +Q R +D D V TR++ Q HAA +TKTQ+T S +KGEMSAKTSFQRTAKGNVTIQECSPDGK+IILENTGSQ E++SG+ + RN D GRIV+ + IP ILE TGK R KIWA+G +P G+ D EC ++NWG G+ IVT+L N KGEEKATHTQRTVYQ+
Sbjct: 21 VQPISGPRNVVINRTAPTVQTTGGQTATSVRRIEMKKSYGASVTPGASSNIVQTGVNSLMNGREKERQELHELNDRFANYIDKVKHLEDENRRLTEELIELKNQWGKETERIKEQFDSDMWELRKSLDAAEAAKVQIEMKINSFEDFIQESELELNEVNQLHNADKETIDKMNNLLADYENEAVSLRRRLTGLEDEKIKDDKEISRLKDEVAQLKKDLDKETLDHIMAQNEVQSLRDKIEFLKKIYESEVRELTALAYKDPTESKDFWRNEMSQALRDIQSEYDRRIDSIQHDMEAQYNLKIQEYRITQTKDSQETILLREENTKLKEQLSDLRNRLPELEARNNELERMLELLRREIDERNRNYDLERANLRKELSNRQAQLENIIAELQILLDAKLSLELEIVAYRKMLEGEEHRVNQKNVMSPSQ-ARRMDVEDSVITRSTAGQSHAAGQSLGASSTTKTQITSSSTVKGEMSAKTSFQRTAKGNVTIQECSPDGKYIILENTGSQPENLSGFKVDRNVDTGRIVVVYAIPEGVILEATGKKRSLKIWAKGCKPSGTDDLECQDANWGIGSLIVTILINKKGEEKATHTQRTVYQM 618
BLAST of Intermediate filament b vs. TrEMBL
Match: A0A5J6BTN2 (Intermediate filament b-like protein 1 (Fragment) OS=Minona ileanae OX=60013 PE=2 SV=1) HSP 1 Score: 520.776 bits (1340), Expect = 7.459e-175 Identity = 317/591 (53.64%), Postives = 427/591 (72.25%), Query Frame = 2
Query: 89 IQPISGYRNVVITRTGPTVSTVGTQGGSNIRTIEMSKSYG-LSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDST-ENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRT-SISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHTQRTVYQ 1852
I+P++ R VVITRT G GS +R +EM +S G LSS G T+ VHNGV+N+M REKEK +++DLN+RFANYI+KVR LE +NK+L++EL L+D+WGKET RIK YD +M QLR+ LD A +KA++E+K+N+LE+ + E Q +L+ A QLH +D+E ID++ S +SD E E++ LR+R+ E + RD E+ RL++E+ L+ DL++ETL HI + E SL D+IEFLKK+ +SE++ELA+L Y+D+T EN++FWR+EM+Q LRDIQ EYD KLD + +ME Y LKIQE RT ++ E +EEN R+K QL+E+R+R+PELEARN +LERLLE LRR+ EEK R+++LE+++LRK L + +AELE +L+ELQ LLDAKLSLELEI AYRK+LEGEE R + NL + + TR + +A P + +IKGEMSAKT++QRTAKGN++IQEC+PDGKF+ +ENTG + EDISG + RN DNGR +I+ P KT LEP G+ + K+WARG +P GS D EC+E+ WG GA I TVL +S GEEKATHTQRTVYQ
Sbjct: 34 IKPVATPRTVVITRTAHGGG--GNSTGSVVREVEMRRSTGALSSVNGHTAG-VHNGVSNIMENREKEKKDMRDLNERFANYIEKVRFLEAQNKKLANELATLRDRWGKETERIKQMYDVEMTQLRKLLDDAMKSKAELEVKVNSLEETVDELQKQLDAANQLHNSDREMIDRLNSQVSDQESELSVLRRRISSFESDHSRDKAEVQRLRDEIRRLRMDLDQETLNHINSEQEAHSLRDEIEFLKKVHDSELKELAALAYRDTTQENREFWRSEMSQCLRDIQNEYDNKLDVMQSEMETHYNLKIQESRTNNTRGGAELQHTKEENIRIKQQLSELRDRIPELEARNAQLERLLEELRRDNEEKLRDWELERSSLRKTLSDNQAELESVLVELQTLLDAKLSLELEIAAYRKLLEGEESRAGLR---NLVEETMKRSSDYETTRVIETRKTNAMPPSN---MGIIKGEMSAKTTYQRTAKGNISIQECAPDGKFLTIENTGKKREDISGMRITRNVDNGRQIIRFTFPDKTFLEPEGRAKSIKVWARGLKPPGSSDMECNENTWGNGANIHTVLISSDGEEKATHTQRTVYQ 615
BLAST of Intermediate filament b vs. TrEMBL
Match: W0GAA8 (Intermediate filament b-like protein OS=Macrostomum lignano OX=282301 GN=if1 PE=2 SV=1) HSP 1 Score: 501.516 bits (1290), Expect = 1.723e-167 Identity = 309/590 (52.37%), Postives = 427/590 (72.37%), Query Frame = 2
Query: 95 PISGYRNVVITRTGPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNG--VNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDST-ENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNR--KSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHTQRTVY 1849
PIS + VVI RT P G G T++ KS ++ + + S I VNN++NGREKEK ++Q+LN+RFANYI+KVR LE +NK+LS+EL LKD+WGKET R+K Y+ ++ QLR+ LD +E KA+ E++I++LED + E Q L++A + H D+ETIDK+ L+DY+ EI+ LR+R+ +EE+ RD KEI RL++E+N L+ DL+ ETL HI A NE QSL +Q+EF+K+I ESE++ELA+L Y+D+T EN++FW+NEMAQAL +IQ EYD K+D + ++E+QY++K+QE RTT +++N+E LREEN R+K Q+ + RNR+PELEARN +LER LE LRRE+EE RE ++EK LR +L N +A LE L ELQ L+D KLSLELEI AYRK+LEGEE R+N+ ++ + ++Q +V++ ++ QQ Q S+IKGEMSAKT++QRTAKGNV+IQECS DGK+I+LENTG ++EDISG+ L RN DNGR VIK +P+ +L G ++ +IWARG +P GS D E +ES+WG GA I T L N++GEE+ATHTQ+TVY
Sbjct: 23 PISAPKTVVINRTLPGF---GIGRGD---TVDSVKSVRVTRSMASASGIQQTNAEVNNMLNGREKEKKDMQELNERFANYIEKVRFLEAQNKKLSNELQQLKDRWGKETERVKQTYETELAQLRKLLDDSEKQKAEAEVRISSLEDQLNELQVLLDEANRQHQVDRETIDKLNQQLADYDGEISLLRRRVATFDEERSRDQKEIKRLRDEVNRLRGDLDAETLNHINAENEAQSLREQLEFMKQIHESELKELAALAYRDTTSENREFWKNEMAQALHEIQREYDNKMDVMRSEIESQYSMKVQEARTTNTRDNMELSHLREENKRIKGQMTDARNRIPELEARNAQLERELEELRREMEEAERECEMEKGRLRTDLANTQATLEEYLKELQTLMDMKLSLELEIAAYRKLLEGEETRINQHHRTQELMSQKSSTVESRSF----AVEQQAMHQGQNKQQMSLIKGEMSAKTTYQRTAKGNVSIQECSADGKYILLENTGKKKEDISGWRLLRNIDNGRQVIKFTVPNGVVL-GDGPHKNIRIWARGLKPPGSDDLEAAESSWGVGANINTSLYNTEGEERATHTQKTVY 601
BLAST of Intermediate filament b vs. TrEMBL
Match: A0A267FSC2 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig010052g3 PE=3 SV=1) HSP 1 Score: 501.13 bits (1289), Expect = 1.879e-167 Identity = 309/590 (52.37%), Postives = 427/590 (72.37%), Query Frame = 2
Query: 95 PISGYRNVVITRTGPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNG--VNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDST-ENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNR--KSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHTQRTVY 1849
PIS + VVI RT P G G T++ KS ++ + + S I VNN++NGREKEK ++Q+LN+RFANYI+KVR LE +NK+LS+EL LKD+WGKET R+K Y+ ++ QLR+ LD +E KA+ E++I++LED + E Q L++A + H D+ETIDK+ L+DY+ EI+ LR+R+ +EE+ RD KEI RL++E+N L+ DL+ ETL HI A NE QSL +Q+EF+K+I ESE++ELA+L Y+D+T EN++FW+NEMAQAL +IQ EYD K+D + ++E+QY++K+QE RTT +++N+E LREEN R+K Q+ + RNR+PELEARN +LER LE LRRE+EE RE ++EK LR +L N +A LE L ELQ L+D KLSLELEI AYRK+LEGEE R+N+ ++ + ++Q +V++ ++ QQ Q S+IKGEMSAKT++QRTAKGNV+IQECS DGK+I+LENTG ++EDISG+ L RN DNGR VIK +P+ +L G ++ +IWARG +P GS D E +ES+WG GA I T L N++GEE+ATHTQ+TVY
Sbjct: 23 PISAPKTVVINRTLPGF---GIGRGD---TVDSVKSVRVTRSMASASGIQQTNAEVNNMLNGREKEKKDMQELNERFANYIEKVRFLEAQNKKLSNELQQLKDRWGKETERVKQTYETELAQLRKLLDDSEKQKAEAEVRISSLEDQLNELQVLLDEANRQHQVDRETIDKLNQQLADYDGEISLLRRRVATFDEERSRDRKEIKRLRDEVNRLRGDLDAETLNHINAENEAQSLREQLEFMKQIHESELKELAALAYRDTTSENREFWKNEMAQALHEIQREYDNKMDVMRSEIESQYSMKVQEARTTNTRDNMELSHLREENKRIKGQMTDARNRIPELEARNAQLERELEELRREMEEAERECEMEKGRLRTDLANTQATLEEYLKELQTLMDMKLSLELEIAAYRKLLEGEETRINQHHRTQELMSQKSSTVESRSF----AVEQQAMHQGQNKQQMSLIKGEMSAKTTYQRTAKGNVSIQECSADGKYILLENTGKKKEDISGWRLLRNIDNGRQVIKFTVPNGVVL-GDGPHKNIRIWARGLKPPGSDDLEAAESSWGVGANINTSLYNTEGEERATHTQKTVY 601
BLAST of Intermediate filament b vs. Ensembl Cavefish
Match: lmnb1 (lamin B1 [Source:NCBI gene;Acc:103034386]) HSP 1 Score: 95.9005 bits (237), Expect = 2.613e-20 Identity = 88/293 (30.03%), Postives = 142/293 (48.46%), Query Frame = 2
Query: 209 LSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQA--EGAKAQMEM-KINTLEDLILEAQTELND---ATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEV-----RELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREE 1054
+SSTP + + I R +EK EL +LNDR A YIDKVR+LE EN L ++ + ++ +E +K Y+ ++ RRSLD E A+ Q+E+ KI T + +L++ + + Q L D E + L+ E +A LE +I L+ L ++ L ETL + N QSLV+++EF K +FE E+ R LV DS ++ ++AQAL D++ ++D ++ +ME Y K++ +R + + REE
Sbjct: 13 MSSTPLSPTRIT----------RLQEKEELSNLNDRLAIYIDKVRSLESENSVLHLQISEKEEVRSRELTGLKALYETELADARRSLDDTAKERARLQIELGKIRTEHEQLLQSYAKKDSDLAGCQARLKDVEAL------LNSKEASLATALSERKALEGSLADLQAQIHELEASLASARKQLGDETLLRVDLENRCQSLVEELEFRKNMFEEEIKDTRRRHETRLVEVDSGRQVEY-EFKLAQALTDMRQQHDDQVKVYKEEMEQTYMAKLENVRLSSEMNSSSASMAREE 288 HSP 2 Score: 69.707 bits (169), Expect = 5.615e-12 Identity = 64/202 (31.68%), Postives = 91/202 (45.05%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSV----IKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPE----CSESNWGFGAQIVTVLQNSKGEEKATHTQRTVYQ 1852
D KL+L++EI AYRK+LEGEE R+ S VT + S + +T+ + V + S + +A GNV I E DGKFI L NT Q++ + G+ + R + K K +L+ K IWA N S P S+S+WG G + VL N GEE A + TV++
Sbjct: 380 DVKLALDMEINAYRKLLEGEEERLKL-----------SPSPSSRVTVSRASSSRSVRTTRGKRKRVDVEESEASSSVSIAHSASATGNVCIDELDVDGKFIRLHNTSDQDQPMVGFEMTRTIGDSSATYK--FTPKYVLKAGQK---VTIWA-SNAGVSSSPPTDLIWKSQSSWGTGENVKVVLTNGDGEEVAVRS--TVFK 562
BLAST of Intermediate filament b vs. Ensembl Cavefish
Match: lmnb1 (lamin B1 [Source:NCBI gene;Acc:103034386]) HSP 1 Score: 95.5153 bits (236), Expect = 3.100e-20 Identity = 88/293 (30.03%), Postives = 142/293 (48.46%), Query Frame = 2
Query: 209 LSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQA--EGAKAQMEM-KINTLEDLILEAQTELND---ATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEV-----RELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREE 1054
+SSTP + + I R +EK EL +LNDR A YIDKVR+LE EN L ++ + ++ +E +K Y+ ++ RRSLD E A+ Q+E+ KI T + +L++ + + Q L D E + L+ E +A LE +I L+ L ++ L ETL + N QSLV+++EF K +FE E+ R LV DS ++ ++AQAL D++ ++D ++ +ME Y K++ +R + + REE
Sbjct: 13 MSSTPLSPTRIT----------RLQEKEELSNLNDRLAIYIDKVRSLESENSVLHLQISEKEEVRSRELTGLKALYETELADARRSLDDTAKERARLQIELGKIRTEHEQLLQSYAKKDSDLAGCQARLKDVEAL------LNSKEASLATALSERKALEGSLADLQAQIHELEASLASARKQLGDETLLRVDLENRCQSLVEELEFRKNMFEEEIKDTRRRHETRLVEVDSGRQVEY-EFKLAQALTDMRQQHDDQVKVYKEEMEQTYMAKLENVRLSSEMNSSSASMAREE 288 HSP 2 Score: 69.707 bits (169), Expect = 4.432e-12 Identity = 63/202 (31.19%), Postives = 92/202 (45.54%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSV----IKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPE----CSESNWGFGAQIVTVLQNSKGEEKATHTQRTVYQ 1852
D KL+L++EI AYRK+LEGEE R+ + + VT + S + +T+ + V + S + +A GNV I E DGKFI L NT Q++ + G+ + R + K K +L+ K IWA N S P S+S+WG G + VL N GEE A + TV++
Sbjct: 361 DVKLALDMEINAYRKLLEGEEERLKLSPSPS-----------SRVTVSRASSSRSVRTTRGKRKRVDVEESEASSSVSIAHSASATGNVCIDELDVDGKFIRLHNTSDQDQPMVGFEMTRTIGDSSATYK--FTPKYVLKAGQK---VTIWA-SNAGVSSSPPTDLIWKSQSSWGTGENVKVVLTNGDGEEVAVRS--TVFK 543
BLAST of Intermediate filament b vs. Ensembl Cavefish
Match: gfap (glial fibrillary acidic protein [Source:NCBI gene;Acc:103035120]) HSP 1 Score: 92.8189 bits (229), Expect = 1.356e-19 Identity = 135/467 (28.91%), Postives = 212/467 (45.40%), Query Frame = 2
Query: 98 ISGYRNVVITRTGPTVSTVGTQGGSNIRTIEMS-----KSYGLSSTPGA--TSNIVHNG------VNNLMNG-----REKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELA-SLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETV-QLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYR--VNRKSNQNLNQTGRSVDTM----DHVTRTSI 1420
+S YR R GP ST S + T +S + LSS PGA TS + G ++L+ R EK E+ LNDRFA+YI+KVR LE +NK L EL L+ GKE +R+ Y ++ +LRR +D KA++E++ + L ++ + L D T L + DN LN +QD+++ + + ++++L D+I FLKK+ E E++EL L+ + + D + ++ ALRDI+ +Y+ + + E Y K ++ T + N E++ Q ++E + Q+ + L L N LER L + + + L E+ K E+ L E Q LL+ KL+L++EI YRK+LEGEE R V +S NL S+DT HV R+ +
Sbjct: 7 LSSYRK----RFGPQGSTGSPALSSRLSTGRLSLHSTPRHLTLSS-PGALSTSRLSLGGERLDFSADSLLKAQYRETRTNEKVEMMGLNDRFASYIEKVRFLEQQNKMLVAELNQLR---GKEPSRLGDIYQEELRELRRQVDGLNAGKARLEIERDNLAADLVTLKQRLQDETALR----------------------------------QEADNN--------LNGFRQDVDEAAMNRVQLERKIEALQDEINFLKKVHEEEMKELQEQLMAQQVHVDLDVSKPDLTAALRDIRVQYEAMASSNMQETEEWYRSKFADL-TDAANRNAESLRQAKQEANDYRRQIQALTCDLESLRGTNESLERQLREMEERFSIETAAYQDTVVRLEDEIQTLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEESRITVPVQSFANLQFRETSMDTKLTPEAHVKRSIV 422
BLAST of Intermediate filament b vs. Ensembl Cavefish
Match: inab (alpha-internexin-like [Source:NCBI gene;Acc:103040041]) HSP 1 Score: 92.4337 bits (228), Expect = 2.342e-19 Identity = 90/329 (27.36%), Postives = 154/329 (46.81%), Query Frame = 2
Query: 104 GYRNVVITRTGPTVSTVGT---QGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTE-NKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQL 1078
GYR++ +TRTG S++G+ G S + + MS GL + A S++++N + R EK ++Q LNDRFA +I+KVRNLE NK L ELV L+ Q E +R+ Y ++ +LR L++A G K QM + + +E+ E+ LR+R E++VR E R L ++D++ +L + +++SL+D+I FL++ + EV EL + + + + ++ AL++I+ +Y+ E Y K ++ ++ N REE + QL
Sbjct: 38 GYRSLSVTRTG--ASSLGSYKRAGRSALSSGPMS--LGLDTLDFAQSSVLNNEFKII---RTNEKEQMQGLNDRFAMFIEKVRNLEQHNKVLETELVTLR-QRQSEPSRLAELYQQEIRELRSQLEEAHGEKNQMMFERDNVEE-----------------------------------ELQKLRERY----EDEVRARDESERT---LKAFRKDVDDASLARLDLEKKVESLLDEIAFLRRAHDEEVAELMNAIQASQVSVEMEVAKPDLTSALKEIRGQYESLASKNLQSAEEWYKSKFADLSEQANRSNEAIRASREEVNEFRRQL 316
BLAST of Intermediate filament b vs. Ensembl Cavefish
Match: inab (alpha-internexin-like [Source:NCBI gene;Acc:103040041]) HSP 1 Score: 90.8929 bits (224), Expect = 1.561e-18 Identity = 81/283 (28.62%), Postives = 140/283 (49.47%), Query Frame = 2
Query: 104 GYRNVVITRTGPTVSTVGT---QGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTE-NKDFWRNEMAQALRDIQTEYD 940
GYR++ +TRTG S++G+ G S + + MS GL + A S++++N + R EK ++Q LNDRFA +I+KVRNLE NK L ELV L+ Q E +R+ Y ++ +LR L++A G K QM + + +E+ E+ LR+R E++VR E R L ++D++ +L + +++SL+D+I FL++ + EV EL + + + + ++ AL++I+ +Y+
Sbjct: 333 GYRSLSVTRTG--ASSLGSYKRAGRSALSSGPMS--LGLDTLDFAQSSVLNNEFKII---RTNEKEQMQGLNDRFAMFIEKVRNLEQHNKVLETELVTLR-QRQSEPSRLAELYQQEIRELRSQLEEAHGEKNQMMFERDNVEE-----------------------------------ELQKLRERY----EDEVRARDESERT---LKAFRKDVDDASLARLDLEKKVESLLDEIAFLRRAHDEEVAELMNAIQASQVSVEMEVAKPDLTSALKEIRGQYE 565
BLAST of Intermediate filament b vs. Ensembl Sea Lamprey
Match: lmnb2 (lamin B2 [Source:ZFIN;Acc:ZDB-GENE-990630-13]) HSP 1 Score: 73.1738 bits (178), Expect = 8.275e-14 Identity = 58/199 (29.15%), Postives = 99/199 (49.75%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHA---APSTKTQVTSVIKGEMSAKTSFQR------TAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPE----CSESNWGFGAQIVTVLQNSKGEEKAT 1828
D KL+L++EI AYRK+LEGEE R+N + + + V +TS S H+ P + +V ++G + + QR +A G++ I+E +GK + + N +++ + G++L+R ++ + I + S+ +L+ + IWA N P ++S+WG G I T L NS GEE A
Sbjct: 361 DIKLALDMEIAAYRKLLEGEESRLNLSPEKGVQSS---------VVQTSTSASHSIRTMPGKRKRVQ--LEGFVDSMAQSQRSVSQHASASGSIGIKEVDMEGKSVTMVNNSEKDQPLGGWVLKRQIED-QAEIAYKFSSRYVLKA---GQTVTIWA-ANAGVSHNPPSDLLWKTQSSWGTGDDIRTSLLNSDGEEVAV 543 HSP 2 Score: 64.6994 bits (156), Expect = 3.165e-11 Identity = 63/218 (28.90%), Postives = 101/218 (46.33%), Query Frame = 2
Query: 275 REKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWG--------------KETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLE-------DLILEAQTELNDA------TQLHLADKETIDKMASTLSDY-EHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRE 844
R +EK L +LNDR A YI++VR+LE + RL + W + T ++ YD ++ ++RR+LD A GAKA +E+++ + + + E N A ++ L KE AS +Y E E+ +LR ++ LE V KQ LE+ETL + N + +L +++EF K+I E E+ E
Sbjct: 16 RLQEKESLVELNDRLAAYIERVRSLEVDKARLLARV----SMWEEEEEEQRQKSERQREATGGLRAAYDAELAEVRRALDDALGAKAALEIQLRLAQVERDEGRSRCSKYEQEWNVALGRIRDMEVQLCAKEASLSTASGDKEYLETEVDDLRNQVNQLEGVLVSS--------------KQQLEEETLARVDLENRMLTLQEELEFTKRIHEQEIHE 215
BLAST of Intermediate filament b vs. Ensembl Sea Lamprey
Match: desmb (desmin b [Source:ZFIN;Acc:ZDB-GENE-061027-102]) HSP 1 Score: 70.0922 bits (170), Expect = 5.027e-13 Identity = 76/256 (29.69%), Postives = 115/256 (44.92%), Query Frame = 2
Query: 194 SKSYGLSSTPGATSNIVHNGVNNLMNG-----REKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDS--TENKDFWRNEMAQALRDIQTEYD 940
S YG S V + +N R EK ELQ+LNDRFANYIDKVR LE +NK L EL LK G+E R+ Y+ ++ +LR +++ G KA+ D + +L D E+ L++RL + K L +QD++ TL + +++SL ++I FLKKI + E+RE+ V + + E + ++ ALRDI+ EY+
Sbjct: 53 SSLYGRSYVKAMPGQSVDFSLAEALNADYRTTRTNEKVELQELNDRFANYIDKVRYLEQQNKALLAELALLK---GREPTRVGPLYEQELRELRAQVERLTGEKAR-------------------GDVERANLLD----------------ELQRLQQRLQEETAAREEAEK-------NLQAFRQDVDDATLARVDLERKVESLQEEIAFLKKIHDEELREVQVQVQEQTVHVEYDVGTKPDLTAALRDIRAEYE 263
BLAST of Intermediate filament b vs. Ensembl Sea Lamprey
Match: neflb (neurofilament, light polypeptide b [Source:ZFIN;Acc:ZDB-GENE-060312-44]) HSP 1 Score: 68.1662 bits (165), Expect = 1.849e-12 Identity = 76/278 (27.34%), Postives = 125/278 (44.96%), Query Frame = 2
Query: 125 TRTGPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIV-----HNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVREL-ASLVYKDSTENKDFWRNEMAQALRDIQTEYD 940
TR+ ST+G GS RT Y S P ATS+++ + N L + R +EK++LQDLNDRFA +I++V +LE +NK L E + L+ Q + IK Y E +I L L E ++E N A K D+M LG L + + + + L+ +++ ++ ++ + ++ SL+D+I FLKK+ + E+ +L A + T R ++ ALRDI+ +Y+
Sbjct: 42 TRSVSVGSTLGVPVGSFRRT---HSRYSSMSIP-ATSDMIDLSQAESLGNELKSIRTQEKDQLQDLNDRFAGFIERVHHLEQQNKVLEAEALILR-QKEMRPSNIKQLY---------------------EQEIRDLRALAEECKSEYNSA-------KGGRDQMEGA--------------LGALRAKHDEERRRREESEGALDEVRKAADEAAVQRVALEQKVGSLLDEIAFLKKVQQEEIADLQAQIQSAHITVEMSVARPDLTSALRDIRAQYE 272
BLAST of Intermediate filament b vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007836.1 (pep scaffold:Pmarinus_7.0:GL477602:49686:51609:1 gene:ENSPMAG00000007086.1 transcript:ENSPMAT00000007836.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 65.855 bits (159), Expect = 7.021e-12 Identity = 62/230 (26.96%), Postives = 110/230 (47.83%), Query Frame = 2
Query: 266 MNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKD-QWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKD--STENKDFWRNEMAQALRDIQTEYDRK 946
M R EK+ LQDLN+RF+ YI KV +LE NK L D++ LK Q G + I Y+ ++ +LR ++ G K ++M+ LE+ +I L ++ G +E ++R + + E + ++++ +L ++ ++Q+LVD+I FLKK E E+ +L + + S E D+ +A+ALR+I+ ++ K
Sbjct: 17 MQARVNEKHLLQDLNERFSAYITKVHDLEQNNKDLDDQISALKQRQSGTTRSGINDVYECEIKELRELIEHINGEKTSVQMEQERLEE-----------------------------------DIKKLEEKCG--QEVRLRSDAD-----ELFKMFSKNIDAASLVRMSNEKQIQALVDEIAFLKKNHEEEMDQLMAQIKSSTVSVEKVDYEEAGIAEALREIRGKFQLK 204
BLAST of Intermediate filament b vs. Ensembl Sea Lamprey
Match: lmnb2 (lamin B2 [Source:ZFIN;Acc:ZDB-GENE-990630-13]) HSP 1 Score: 65.855 bits (159), Expect = 8.172e-12 Identity = 51/191 (26.70%), Postives = 90/191 (47.12%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYRVN----RKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPEC---SESNWGFGAQIVTVLQNSKGEEK 1822
+ KL+L++EI AYRKMLEGEE R++ S + ++ +V T R + Q + ++ VT + +A G + + E G+F+ L N Q++ + G+ ++R+ +G I + +TI++ IWA G Q + + S WG G ++ V+ N+ GEE+
Sbjct: 153 EVKLALDMEISAYRKMLEGEEERLHLSPSPSSRVTVTRSSETVRTSGGAKRKRLDVQESEATSSVSVTQ------------RASASGVIAVDEIDAGGRFVKLINDSQQDQAVGGWTVKRSI-HGHADIVYKFTGRTIVKAGDS---ITIWAGGAGVQHNPPRDLLMKQHSTWGSGDEVRVVVLNANGEEQ 327
BLAST of Intermediate filament b vs. Ensembl Nematostella
Match: EDO37225 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SGD1]) HSP 1 Score: 139.428 bits (350), Expect = 6.639e-35 Identity = 159/576 (27.60%), Postives = 269/576 (46.70%), Query Frame = 2
Query: 218 TPGATSNIVHNGV-NNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQA--EGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIM--------------RLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTEN-------KDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSE-------SNWGFGAQIVTVLQNSKGEEKATHTQRTVYQ 1852
TP ++S I+ + + R +EK ELQ LNDR A YID+V+NLE EN +L E+ + +E +K+ Y+ ++ RR LD+ E AK Q+E N+ NDA + K DK A+ E E+ ++RK L E + R N+E + LK+ L K LE+ETL + N QSL ++ F K++++ E+ ++ S + T+ KD + MA+ L++++ +YD + + E Y+ K +E+R + +++ +LREEN L + E+ +++ +LEA+NN L + L+ + + D E E+ + ++ L + + L+ K++L++EI AYRK+LE EE R+ + G S S+SQ T+ E + + TA+G + E PDGK+I + N+G ++E + G+ +QR + P K +L+ + +W+ QG G + +WG G + T L N+ GEE AT + V+Q
Sbjct: 17 TPVSSSRIMGSSPPGSAKFTRAQEKAELQHLNDRLATYIDRVKNLEQENSKLRSEVTVSRKTVEREVDSMKSLYETELADARRLLDETAKEKAKQQIESSKNS------------NDAQEF----KNKFDKEAAARKKAEKELNDVRKLLHDKENQLTRRNQEALNLESVLRELQGECEELKDALKAAKYALEQETLTRVDLENRCQSLQEEQNFKKQMYDKELSDIRSQLKTVETKRVVVETDYKDKYEGLMAEKLQELREDYDSDARSFKEETELLYSSKFEELRIQRERDSEALAKLREENRNLSKSVDELSSQVHQLEAKNNALVSRVSDLQGLRAQDKEKHDNEILLRENEIAELRTSIDDALRDYEDLMGVKVALDMEITAYRKLLESEETRLEITPPASPVLGGSS----------SVSQ------TRRGNKRARTEETESTMTTTTTAEGAIQFTEADPDGKYIKIYNSGEKDEALGGWTIQRQVGTEDPSVYKFTP-KYVLKSQS---HVTVWS----AQGGGTHKPPSDLVFKQLPSWGSGNEARTALVNAGGEEMATLLEEKVFQ 552
BLAST of Intermediate filament b vs. Ensembl Nematostella
Match: EDO39801 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8W1]) HSP 1 Score: 46.2098 bits (108), Expect = 2.053e-6 Identity = 31/104 (29.81%), Postives = 54/104 (51.92%), Query Frame = 2
Query: 1517 GNVTIQECSPDGKFIILENTGS-QEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPEC---SESNWGFGAQIVTVLQNSKGE 1816
GNV I E +PDG ++ L NT + ++E+I GY++Q+N GR V P +T L+ + +W+ G+ + + + + WG G + T+L G+
Sbjct: 5 GNVRILEVNPDGNYVRLFNTSAHRDEEIGGYMIQQNV-AGRPVTVFRFPPRTRLKALS---HTTVWSAGSLSRHNPPSDFLWKEQHKWGTGPECTTILCKPNGQ 104
BLAST of Intermediate filament b vs. Ensembl Medaka
Match: lmnl3 (lamin-L(III) [Source:NCBI gene;Acc:101168604]) HSP 1 Score: 108.227 bits (269), Expect = 2.602e-24 Identity = 144/555 (25.95%), Postives = 260/555 (46.85%), Query Frame = 2
Query: 212 SSTPGATSNIVHNGVNNLMNG---REKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKET-IDKMASTLSDYEHEIANL---RKRLGGLEEEKVRDNKEIMRLKEELNLL---KQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELAS-----LVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESN--WGFGAQIVTVLQNSKGEEKA 1825
+STP A G + G R +E+ EL+ LNDR ANYI +V+ LE E + L + ++ +ET ++ Y+ ++ +RR+LD+ +A+++++ + IL+ Q+ N + LA T K+ + LS E E L RLGG +V D + ++L+ LL K L E L + N++Q+L +Q+E K I E+ E+ S LV +S ++F +++A+ ++ ++ ++ +L ME ++ K+Q + + V REE +++L +R++L + + LE + L+R ++++ + + +ELL+ + ++ L Q LLD KL+L++EI AYRKMLE EE R+ S H + + + H K + + + K + T KG VT+ E GK++ ++N QE+ + G++++R + V PS + + IW+ G + E+N WG + VL N EE++
Sbjct: 5 TSTPAARGG--RRGACSPSPGQPPRVQERGELRHLNDRLANYIQRVQELEQEKGAMLLRLQEQEEATARETRGVRRLYEEELADVRRALDELAAERARLQIEQGNQREDILKLQSR-NQKKENDLAAAVTQRRKVEAVLSSKEAENRKLLSENGRLGG----EVADLQ--VQLENAERLLAETKNQLSSEILRRVEMENQVQTLKEQLELQKNISRQEILEVRSRQETRLVEVESGRRREF-ESKLAETMQQLREDHTLQLQQYKEAMEKTFSTKLQNAQQAAEENGVSVSTAREELEASREKLESLRSQLQQNQKDKLVLEERFQELQRTLDQERDAWQQRLSLKERELLSMRTQMNSQLENHQNLLDVKLALDMEINAYRKMLEVEEQRLQ-----------LSPTPPRHTSVARVQEHHQLRGKKRKHEEATRSSPAYKICRRSTRKGGVTVAEVDVGGKYVQIQNNSDQEQPLGGWVVRRVYPHSGDVSFQFPPSCVL----AGGQTLTIWSSGAADEAEPGDMVLENNGSWGAVGDMRVVLLNPSHEEES 534
BLAST of Intermediate filament b vs. Ensembl Medaka
Match: lmnl3 (lamin-L(III) [Source:NCBI gene;Acc:101168604]) HSP 1 Score: 108.612 bits (270), Expect = 2.819e-24 Identity = 144/555 (25.95%), Postives = 260/555 (46.85%), Query Frame = 2
Query: 212 SSTPGATSNIVHNGVNNLMNG---REKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKET-IDKMASTLSDYEHEIANL---RKRLGGLEEEKVRDNKEIMRLKEELNLL---KQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELAS-----LVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESN--WGFGAQIVTVLQNSKGEEKA 1825
+STP A G + G R +E+ EL+ LNDR ANYI +V+ LE E + L + ++ +ET ++ Y+ ++ +RR+LD+ +A+++++ + IL+ Q+ N + LA T K+ + LS E E L RLGG +V D + ++L+ LL K L E L + N++Q+L +Q+E K I E+ E+ S LV +S ++F +++A+ ++ ++ ++ +L ME ++ K+Q + + V REE +++L +R++L + + LE + L+R ++++ + + +ELL+ + ++ L Q LLD KL+L++EI AYRKMLE EE R+ S H + + + H K + + + K + T KG VT+ E GK++ ++N QE+ + G++++R + V PS + + IW+ G + E+N WG + VL N EE++
Sbjct: 5 TSTPAARGG--RRGACSPSPGQPPRVQERGELRHLNDRLANYIQRVQELEQEKGAMLLRLQEQEEATARETRGVRRLYEEELADVRRALDELAAERARLQIEQGNQREDILKLQSR-NQKKENDLAAAVTQRRKVEAVLSSKEAENRKLLSENGRLGG----EVADLQ--VQLENAERLLAETKNQLSSEILRRVEMENQVQTLKEQLELQKNISRQEILEVRSRQETRLVEVESGRRREF-ESKLAETMQQLREDHTLQLQQYKEAMEKTFSTKLQNAQQAAEENGVSVSTAREELEASREKLESLRSQLQQNQKDKLVLEERFQELQRTLDQERDAWQQRLSLKERELLSMRTQMNSQLENHQNLLDVKLALDMEINAYRKMLEVEEQRLQ-----------LSPTPPRHTSVARVQEHHQLRGKKRKHEEATRSSPAYKICRRSTRKGGVTVAEVDVGGKYVQIQNNSDQEQPLGGWVVRRVYPHSGDVSFQFPPSCVL----AGGQTLTIWSSGAADEAEPGDMVLENNGSWGAVGDMRVVLLNPSHEEES 534
BLAST of Intermediate filament b vs. Ensembl Medaka
Match: desmb (desmin [Source:NCBI gene;Acc:101174730]) HSP 1 Score: 89.7373 bits (221), Expect = 1.511e-18 Identity = 106/361 (29.36%), Postives = 172/361 (47.65%), Query Frame = 2
Query: 263 LMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTE-NKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRV 1342
+ R EK ELQ LNDRFA+YI+KVR LE +N+ LS E+ L+ G+E RI Y+ +M +LRR ++ ++++E++ + L E +DK+ LR + L++E +N L + D++ TL + +++L ++I FLKKI E E+REL + + + + D + ++ ALRDI+T+Y+ D E Y K+ ++ S+ N Q R+E + Q+ + L+ N L R + L + F L E+ N K E+ L E Q LL+ K++L++EI YRK+LEGEE R+
Sbjct: 100 FLATRTNEKAELQHLNDRFASYIEKVRFLEQQNQALSVEVERLR---GREPTRIADLYEEEMRELRRQVEILTNQRSRVEVERDNL---------------------AEDLDKL------------KLRLQEEILQKEDAENN---------LAAFRADVDAATLARLDLERRIETLQEEIAFLKKIHEEEIRELQTQMQETQVQIQMDMSKPDLTAALRDIRTQYEGIAAKNIADAEDWYKSKVSDLNQAVSKNNEALKQARQETMEFRHQIQAYTCEIDSLKGTNESLMRQMRELEDRHGCEAARFQDTIARLEAEIANMKDEMARHLREYQDLLNIKMALDVEIATYRKLLEGEESRI 415
BLAST of Intermediate filament b vs. Ensembl Medaka
Match: desmb (desmin [Source:NCBI gene;Acc:101174730]) HSP 1 Score: 88.1965 bits (217), Expect = 4.194e-18 Identity = 106/360 (29.44%), Postives = 171/360 (47.50%), Query Frame = 2
Query: 263 LMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTE-NKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYR 1339
+ R EK ELQ LNDRFA+YI+KVR LE +N+ LS E+ L+ G+E RI Y+ +M +LRR ++ ++++E++ + L E +DK+ LR + L++E +N L + D++ TL + +++L ++I FLKKI E E+REL + + + + D + ++ ALRDI+T+Y+ D E Y K+ ++ S+ N Q R+E + Q+ + L+ N L R + L + F L E+ N K E+ L E Q LL+ K++L++EI YRK+LEGEE R
Sbjct: 100 FLATRTNEKAELQHLNDRFASYIEKVRFLEQQNQALSVEVERLR---GREPTRIADLYEEEMRELRRQVEILTNQRSRVEVERDNL---------------------AEDLDKL------------KLRLQEEILQKEDAENN---------LAAFRADVDAATLARLDLERRIETLQEEIAFLKKIHEEEIRELQTQMQETQVQIQMDMSKPDLTAALRDIRTQYEGIAAKNIADAEDWYKSKVSDLNQAVSKNNEALKQARQETMEFRHQIQAYTCEIDSLKGTNESLMRQMRELEDRHGCEAARFQDTIARLEAEIANMKDEMARHLREYQDLLNIKMALDVEIATYRKLLEGEESR 414
BLAST of Intermediate filament b vs. Ensembl Medaka
Match: gfap (glial fibrillary acidic protein [Source:NCBI gene;Acc:101173548]) HSP 1 Score: 85.5001 bits (210), Expect = 2.686e-17 Identity = 74/230 (32.17%), Postives = 115/230 (50.00%), Query Frame = 2
Query: 275 REKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEE---LNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRE-----LASLVYKDSTENKDFWRNEMAQALRDIQTEYD 940
R EK E+ LNDRFA+YI+KVR LE +NK L EL L+ GKE +R+ Y +++ +LRR +D KA++E++ + L AD +A L++RL EI++ +E LN +QD+++ +L + +++SL D+I FLKKI E E+RE LA V+ D D + ++ ALRDI+ +Y+
Sbjct: 83 RTNEKMEMMGLNDRFASYIEKVRMLEQQNKVLVAELNQLR---GKEPSRLGDIYQDELRELRRQVDNLTTGKARLEIERDNL------------------AAD-----------------LATLKQRL----------QDEIVQRQEAENNLNAFRQDVDEASLSRVQLERKIESLQDEINFLKKIHEEELRESQEKVLAQQVHVDL----DVSKPDLTAALRDIRLQYE 260
BLAST of Intermediate filament b vs. Planmine SMEST
Match: SMESG000062826.1 (SMESG000062826.1) HSP 1 Score: 1075.46 bits (2780), Expect = 0.000e+0 Identity = 591/591 (100.00%), Postives = 591/591 (100.00%), Query Frame = 2
Query: 83 PPIQPISGYRNVVITRTGPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHTQRTVYQL 1855
PPIQPISGYRNVVITRTGPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMRNRLPELEARNNELERLLELLRREIEEKNREFDLEKNNLRKELLNRKAELEGILIELQILLDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHTQRTVYQL
Sbjct: 20 PPIQPISGYRNVVITRTGPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMRNRLPELEARNNELERLLELLRREIEEKNREFDLEKNNLRKELLNRKAELEGILIELQILLDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHTQRTVYQL 610
BLAST of Intermediate filament b vs. Planmine SMEST
Match: SMESG000046289.1 (SMESG000046289.1) HSP 1 Score: 447.588 bits (1150), Expect = 1.499e-150 Identity = 260/578 (44.98%), Postives = 392/578 (67.82%), Query Frame = 2
Query: 119 VITRTGPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDST-ENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHTQRTVY 1849
+ +RT + + ++ EM +SY S P S +H+ V++ + GRE+EK E+QDLN+R ANYI+KVR LE +NKRL++EL L+++WGKE RI+ Y+ +M QL++ LD+AE A++++ KIN LE+ + E +++A H D+E I+K+ LS+ E EI LR+R+ LEEE+ R K I RL++E+ + DL++ET+ HI + +E+QS D+I+F+K ++E++ELA+L Y+DST EN+DFWR+EM +LR++Q EYDRKL+ + D+E + +K+QE+R + +E VE++ L+EEN RLK+QL+ +R++ PE+EA+N +LER LE LRR+++ + +F+ E++ LR +L + EL+ I+ E Q ++D KLSLELEI AYRK+LEGEE R + + M+ + +KT V++++K E +AK + QRTAKGNV I E S DGKFIILENTG ++EDISG+ + RN DN R +I++ IP+ TIL+P G+ ++ KIW++GNRP GS D ECS +NWG G I T L N EE+ATHTQ+T +
Sbjct: 1 MASRTSARSTVTINKSSPAVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGEIGLLRRRIAALEEERGRSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQLERFLEELRRDLDRQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLR------------NMMEQTIFKTSGGIEGNIISKTAVSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKIIRNIDNDRSIIRYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTTF 566
BLAST of Intermediate filament b vs. Planmine SMEST
Match: SMESG000046938.1 (SMESG000046938.1) HSP 1 Score: 341.658 bits (875), Expect = 7.058e-109 Identity = 229/592 (38.68%), Postives = 374/592 (63.18%), Query Frame = 2
Query: 89 IQPISGYRNVVITRTGPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDST-ENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXXAXXXXXXXXXXXXXDAKLSLELEIIAYRKMLEGEEYRVNRKS-----NQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHTQRTV 1846
+ PIS R ++I RT V + + I+ S +Y P ++ + V N REK+K+++++LN++ A YI++VR LE +NK+ S EL +LKD+WGK+T +K Y+ +M L++ L +AE + + E + LE + +A+ ELN + + + I+ LS+ E I+ L+KRLG LEE K +D EI++L++E+ L++DL +T++++ ELQ +D++EFLK+I ++++ EL++L Y+D+T +NKDFW+ E++ A++DIQ++YD ++ L +E+QY +++Q+ +T ++ +E +++EN R+K++ R+R+P+LE + LER L LR E EE R++++E ++ KEL + + I+L+ LLD KLSL+LEI AYRK+LEGEE R KS ++N T ++ V + +I Q+ T T T GE+SAK++F RT KGNV+I EC+ DG+ IILEN G +E+IS ++ R+ D+GR ++K VIP KT ++ N+ KIWA+G +P G+ D E E+NWG G+ I T+L N+ GEE+AT+TQ+TV
Sbjct: 39 VSPISSQRTIIINRTNNQVPS---------QIIQRSFNYETRVIPSKSA--AYGDVGNYKKEREKDKSDMRNLNEKLAGYIEQVRFLEAQNKKQSGELSNLKDKWGKDTEEVKIRYNIEMQNLKKLLTEAEKNRGKTEFDLINLEHELQKAKDELNLSRDMENELLKKIEICEEKLSEEEALISMLKKRLGKLEEHKAKDKMEILKLRDEIQNLQRDLNNQTIKYLNVECELQGKLDEMEFLKQIHQTQLNELSALAYRDTTKDNKDFWKAEISLAMQDIQSDYDDRIQMLRSSIESQYGVRMQDTKTENAKLLMELNSIKDENKRIKNEWGSTRSRIPDLENKIISLERALVDLRHESEENKRDYEIELSSKTKELTEADSIIHETEIQLKTLLDDKLSLQLEIAAYRKLLEGEETRWTDKSSTVVVHENGTLTSNLKTFVNQVKQETIVQKK-VQETNTSAT----GEISAKSTFNRTTKGNVSILECTTDGRCIILENIGKNKEEISDMLINRDIDHGRQLLKFVIPKKTFMDG---NKTIKIWAKGFKPVGTNDLEIPETNWGMGSDIHTILYNAVGEERATYTQKTV 611
BLAST of Intermediate filament b vs. Planmine SMEST
Match: SMESG000030598.1 (SMESG000030598.1) HSP 1 Score: 213.772 bits (543), Expect = 3.575e-60 Identity = 123/310 (39.68%), Postives = 201/310 (64.84%), Query Frame = 2
Query: 161 QGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDST-ENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEM 1087
QG SNI I S + +GV ++ GR +EK +LQDLN+RFA+YI+K R LE +NK+L++E+ LK ++ ++IK Y+ ++ QLR ++++E +KA +E ++++LE I + + L ++ K TIDK +S +E E+ LR+ G + ++ +E+ L+++L L+QD EKE L H+T +ELQSL + +EF K+I ++EV+ELA++ Y+D T EN +W++EM +ALRDIQTEY+ KL + ++EA Y L++QEIRT+++++NVET +EEN+R+K Q+ M
Sbjct: 121 QGSSNIPLIR------------GDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYEKEALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSM 418 HSP 2 Score: 83.5741 bits (205), Expect = 1.735e-16 Identity = 65/198 (32.83%), Postives = 87/198 (43.94%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEM---------SAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHTQ 1837
DAKL LELEI AY K+LE EE RVN ++ N + T S S M S + F+RT KGN++I E G IILEN G++ E + G ++R D I I K L K + A+G + E +++WG G +VT L +S+G EKA H Q
Sbjct: 480 DAKLGLELEIAAYAKLLEFEESRVNFSADGNATLSQFMSFTSSSGAGGGGGGSSGFGSGSRIGGSSGFSGMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEK---ISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQ 674
BLAST of Intermediate filament b vs. Planmine SMEST
Match: SMESG000030598.1 (SMESG000030598.1) HSP 1 Score: 213.386 bits (542), Expect = 4.491e-60 Identity = 123/310 (39.68%), Postives = 201/310 (64.84%), Query Frame = 2
Query: 161 QGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDST-ENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEM 1087
QG SNI I S + +GV ++ GR +EK +LQDLN+RFA+YI+K R LE +NK+L++E+ LK ++ ++IK Y+ ++ QLR ++++E +KA +E ++++LE I + + L ++ K TIDK +S +E E+ LR+ G + ++ +E+ L+++L L+QD EKE L H+T +ELQSL + +EF K+I ++EV+ELA++ Y+D T EN +W++EM +ALRDIQTEY+ KL + ++EA Y L++QEIRT+++++NVET +EEN+R+K Q+ M
Sbjct: 126 QGSSNIPLIR------------GDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYEKEALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSM 423 HSP 2 Score: 83.1889 bits (204), Expect = 2.301e-16 Identity = 65/196 (33.16%), Postives = 93/196 (47.45%), Query Frame = 2
Query: 1271 DAKLSLELEIIAYRKMLEGEEYRVNRKSNQN------LNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAK-TSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHTQ 1837
DAKL LELEI AY K+LE EE RVN ++ N ++ T S + + S + +T + +K F+RT KGN++I E G IILEN G++ E + G ++R D I I K L K + A+G + E +++WG G +VT L +S+G EKA H Q
Sbjct: 485 DAKLGLELEIAAYAKLLEFEESRVNFSADGNATLSQFMSFTSSSGAGGAGGSGFGSGSRIGGSSGFSGMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEK---ISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQ 677 The following BLAST results are available for this feature:
BLAST of Intermediate filament b vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Intermediate filament b vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Intermediate filament b vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of Intermediate filament b vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Intermediate filament b vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Intermediate filament b vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Intermediate filament b vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Intermediate filament b vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Intermediate filament b vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Intermediate filament b vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of Intermediate filament b vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Intermediate filament b vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 2
BLAST of Intermediate filament b vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Intermediate filament b vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30033119 ID=SMED30033119|Name=Intermediate filament b|organism=Schmidtea mediterranea sexual|type=transcript|length=1930bpback to top protein sequence of SMED30033119-orf-1 >SMED30033119-orf-1 ID=SMED30033119-orf-1|Name=SMED30033119-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=611bp MLTSKTTTSKTNYKSTTNSPPIQPISGYRNVVITRTGPTVSTVGTQGGSNback to top Aliases
The feature 'Intermediate filament b' has the following synonyms
Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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